BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (282 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA Sbjct: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP Sbjct: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 >gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 300 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/286 (77%), Positives = 251/286 (87%), Gaps = 4/286 (1%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHT 56 M L+ K+ KI S KDSHYAKLRRN+RD KK+Q NQK ++H +Q NLFLYG+HT Sbjct: 15 MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL Sbjct: 75 VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S PLE+EIK+DKIALILGAE Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300 >gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] Length = 295 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 14/283 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKM-------QSFNQKSRHTSQ-------PENLFLYGVHTVSA 59 S +D+HYA LRR RD K+ Q +++R P+ + LYG+HTV A Sbjct: 10 STRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHLYGLHTVRA 69 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+HQG+ LET Sbjct: 70 ALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIHQGVMLETR 129 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ES VLAKS Sbjct: 130 PLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPTESGVLAKS 189 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL+LGAEGKG Sbjct: 190 ASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIALVLGAEGKG 249 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 250 LRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] Length = 295 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 14/283 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKM-------QSFNQKSRHTSQ-------PENLFLYGVHTVSA 59 S +D+HYA LRR RD K+ Q +++R P+ + LYG+HTV A Sbjct: 10 STRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHLYGLHTVRA 69 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+HQG+ LET Sbjct: 70 ALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIHQGVMLETR 129 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ES VLAKS Sbjct: 130 PLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPTESGVLAKS 189 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL+LGAEGKG Sbjct: 190 ASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIALVLGAEGKG 249 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 250 LRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] Length = 293 Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 150/282 (53%), Positives = 197/282 (69%), Gaps = 13/282 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S +DSHYA LRR RD K+ + QK R ++ P+ +FLYG+HTV AA Sbjct: 10 SDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLYGLHTVRAA 69 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LNNP RK +L T+NAL RL+ PFPV+ V PQ +DK +G EA+HQG+ LET P Sbjct: 70 LNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQGVMLETRP 129 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A++ S LL+VLD V DPHN+GAI+R+AVAF +ITT R+SP+ES VLAKSA Sbjct: 130 LPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTESGVLAKSA 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL +AL ++H GF +IGL S+ +PLE+ DK+AL+LG+EGKGL Sbjct: 190 SGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALVLGSEGKGL 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 R KT++T ++A L MPG IK+LNVSNAAA+ALY ++ + Sbjct: 250 RQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLR 291 >gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae WSM419] Length = 291 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 148/280 (52%), Positives = 197/280 (70%), Gaps = 13/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60 S +D+HYA LRR HRD ++ + R + P+ + LYG+HTV AA Sbjct: 10 SARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLYGLHTVRAA 69 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP R+I +L T+NA ARLD + PFPV+TV PQ +D+I+G +A+HQG+ LET P Sbjct: 70 LDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQGVMLETRP 129 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKSA Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+ISNL D + ++H+ GF TIGL S+ +PLE DKIAL+LG+EGKGL Sbjct: 190 SGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 R KT++T ++A L MPG IK+LNVSNAAA+A+Y ++H Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289 >gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 296 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 149/268 (55%), Positives = 191/268 (71%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ D L PF + V P IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLFTTQNALARLEIDVETLGIPFEI--VSPHEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET T++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi ATCC 49188] Length = 286 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 141/274 (51%), Positives = 189/274 (68%), Gaps = 10/274 (3%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD K + + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRDQKAV-TEGKSPRKPQRPSISAGAVTEGTVRLYGLHTVRAAVENPER 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRARKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 130 SELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEM 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I +I + NL +A++++HS GFQTIGL S+ + +E + +IAL+LGAEGKGLR KT+E Sbjct: 190 ISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALVLGAEGKGLRQKTRE 249 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 250 TVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] Length = 296 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] Length = 303 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENPER 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 +I ++LAT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 RILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQGVMIEAEPLRARKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 147 SELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++HS GFQTIGL DS+ PLE E + +IAL+LGAEGKGLR KT Sbjct: 207 ISHIEVRNLAEAIEELHSLGFQTIGL--DSEGPLEMEATLSGGRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13] gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13] gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13] gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] Length = 286 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRARKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6 str. 870] gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2 str. 86/8/59] gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4 str. 292] gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9 str. C68] gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1 str. 9-941] gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] Length = 286 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 KILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC 25840] Length = 303 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E+ ++IAL+LGAEGKGLR KT Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEVTLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] Length = 282 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/272 (55%), Positives = 187/272 (68%), Gaps = 6/272 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP-EN-----LFLYGVHTVSAALN 62 S K + KD+HYAKLRR RD K + K R P EN + LYG+HTV AAL+ Sbjct: 2 SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP R+I ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 LDA+ +++L++VLD V DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL DAL ++H GFQTIGL SD LE D++AL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KT+ET T++A L MPG I++LNVSNAAAV+LY Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLY 273 >gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] Length = 291 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/280 (52%), Positives = 195/280 (69%), Gaps = 13/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60 S +D+HYA LRR HRD ++ + R + P+ + LYG+HTV AA Sbjct: 10 SARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLYGLHTVRAA 69 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQG+ LET P Sbjct: 70 LDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQP 129 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKSA Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+LG+EGKGL Sbjct: 190 SGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 R KT++T ++A L MPG IK+LNVSNAAA+A+Y ++H Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289 >gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] Length = 291 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/280 (52%), Positives = 195/280 (69%), Gaps = 13/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60 S +D+HYA LRR HRD ++ + R + P+ + LYG+HTV AA Sbjct: 10 SARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLYGLHTVRAA 69 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQG+ LET P Sbjct: 70 LDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQP 129 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKSA Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+LG+EGKGL Sbjct: 190 SGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 R KT++T ++A L MPG IK+LNVSNAAA+A+Y ++H Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289 >gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28] gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis M5-90] Length = 303 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] Length = 303 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] Length = 286 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPTIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330] gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3 str. Tulya] gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5 str. 513] gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3 str. 686] gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M163/99/10] gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis B2/94] gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M644/93/1] gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M13/05/1] gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M292/94/1] gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae 5K33] gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis bv. 3 str. Ether] gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M490/95/1] gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94] gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99] gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99] gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330] gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC 23365] gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis ATCC 23457] gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99] gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] Length = 286 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CNPAF512] Length = 296 Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 148/268 (55%), Positives = 191/268 (71%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ D L PF + V P IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDVEALDIPFEI--VAPHEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET T++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 282 Score = 284 bits (727), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 146/275 (53%), Positives = 193/275 (70%), Gaps = 6/275 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP-EN-----LFLYGVHTVSAALN 62 S+K + KD+HYAKLRR +RD K + + R P EN + LYG+HTV AAL+ Sbjct: 2 SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP RKI ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL +AL ++H GF+T+GL SD+ LE+ +KIAL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KT+ET T++A L MPG I +LNVSNAAA++LY+ + Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276 >gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT 894] Length = 296 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/268 (55%), Positives = 189/268 (70%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ DA L PF + V PQ IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLFVTQNALARLEIDAETLGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET ++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 303 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 28 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 87 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E+ VLAK+ASGALE Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGALEL 206 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 286 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E+ VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC 23445] Length = 286 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66 KDSHYA+LRR H D +K + + R +P + LYG+HTV AA+ NP R Sbjct: 11 KDSHYARLRRQHHD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + L Sbjct: 70 KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGALE Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 I +I + NL +A++++H+ GFQTIGL DS+ PLE E + ++IAL+LGAEGKGLR KT Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] Length = 296 Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 146/268 (54%), Positives = 188/268 (70%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + + P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ D L PF + V PQ IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVEALGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET ++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVNALARLDMPGSIKSLNVSN 281 >gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 310 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 8/265 (3%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 +D+HYA LRR HRD K+ N PE L LYG+HTV+AAL NP R +LL T+ Sbjct: 50 RDTHYANLRRAHRDRKRELKPNA-------PEPLLLYGLHTVAAALQNPDRIRHRLLITR 102 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 NA ARL+ D + P++ V P+ +D+++G EAVHQG LET PL LDA+ ++ LL Sbjct: 103 NARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDATLL 161 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+ I + NL Sbjct: 162 LVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVRNL 221 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + L+++ GF+TIGL S+ + EQ I+ +KIA++LGAEGKGLR KT+ T +A L Sbjct: 222 AETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLARLE 281 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 MPG I +LNVSNAAAVALY + Sbjct: 282 MPGAIHSLNVSNAAAVALYAIRRRL 306 >gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/268 (54%), Positives = 189/268 (70%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R ++ P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ D L PF + V PQ IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVETLGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+++NL DAL ++H GF TIGL S+ LE +K+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET ++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/268 (54%), Positives = 187/268 (69%), Gaps = 16/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF------NQKSRHTSQ-------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + +++ R P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK L T+NALARL+ D L PF + V PQ IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKITLFVTQNALARLEVDVEALGMPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKS Sbjct: 134 PLPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKG Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET ++A L MPG IK+LNVSN Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] Length = 300 Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/281 (48%), Positives = 190/281 (67%), Gaps = 16/281 (5%) Query: 16 KDSHYAKLRRNHRDYKK-------MQSFNQKS---------RHTSQPENLFLYGVHTVSA 59 +D+HYAKLRR+HRD K+ +Q ++ E+++LYG+HTV A Sbjct: 14 RDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTVRA 73 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP+R+I L AT+NAL RL+ + PFPV+ V PQ ID+++G +AVHQG+ LE Sbjct: 74 ALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLEAR 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL + L + ++ L+++LD V DPHN+GAI+RSAVAF ++TT+R+SP ES VLAK+ Sbjct: 134 PLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLAKA 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE I +I + NL A++ + + GF T+GL S+ P+E +K +IA++LGAEGKG Sbjct: 194 ASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEGKG 253 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LR KT+ET + L MPG IK+LNVSNA A+ALY Q + Sbjct: 254 LRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYL 294 >gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] Length = 284 Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 141/275 (51%), Positives = 184/275 (66%), Gaps = 10/275 (3%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKS---RHTSQPEN------LFLYGVHTVSAALNNPSR 66 KD+HYA LRR HRD K+ + + QP + LYG+HTV+AALNNP R Sbjct: 11 KDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGRPAPAGRVRLYGIHTVAAALNNPHR 70 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 K+ LL T+NALARL+ + PV+ V P+ +D +G EAVHQG+ LET PL + L Sbjct: 71 KLHSLLVTRNALARLEIAEDAIR-CPVEMVEPKRLDAELGGEAVHQGVMLETEPLPAIRL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++L++VLD V DPHN+GAILRSA AF D ++TT R+SP ES VLAK+ASGALEH Sbjct: 130 SDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEH 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + I + NL DAL + GF+TIGL SD + E + ++IA++LGAEGKGLR KTQ Sbjct: 190 VTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQKTQA 249 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T ++A L MPG I++LNVSNAAA+ALY T+ H Sbjct: 250 TVDALARLEMPGAIRSLNVSNAAAIALYATRRHLG 284 >gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] Length = 291 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 147/290 (50%), Positives = 197/290 (67%), Gaps = 14/290 (4%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLF 50 +SK KS S +DSHYA LRR HRD ++ + R + P+ +F Sbjct: 1 MSKDKSGD-KSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVF 59 Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 LYG+HTV AAL+NP R I +L T+NA ARL+ FPV+ V PQ +D+ +G +A+ Sbjct: 60 LYGLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAI 119 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ LET PL L+A+ + L+++LD V DPHN+GAI+RSAVAF +ITT R+SP Sbjct: 120 HQGVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSP 179 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 +ES VLAKSASGALE IPYI+I+NL D ++++H GFQTIGL S+ +PLE K+A Sbjct: 180 TESGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVA 239 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+LG+EGKGLR KT++T T++A L MPG IK+LNVSNAAA+A+Y + H Sbjct: 240 LVLGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSNAAAIAMYAARQHL 289 >gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 302 Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 142/268 (52%), Positives = 183/268 (68%), Gaps = 14/268 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVSA 59 S KD+HYA LRR HRD K+ + QK + P+ ++LYG+HTV A Sbjct: 20 SAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVRA 79 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL NP RK +L T+NAL RL+ P + V PQ IDK++G EA+HQG+ LET Sbjct: 80 ALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLETR 139 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF +ITT+R+SP+ES VLAKS Sbjct: 140 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAKS 199 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL DAL ++H GF +IGL S+ PLE +K+AL+LG+EGKG Sbjct: 200 ASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 259 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT+ET ++A L MPG IK+LNVSN Sbjct: 260 LRQKTRETVNALARLDMPGAIKSLNVSN 287 >gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 276 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/274 (50%), Positives = 192/274 (70%), Gaps = 5/274 (1%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKI 68 +K + KDSHYA+LRR HR+ + N+++ PE + LYG+HTV AA++NP+R I Sbjct: 5 KKTGTPKDSHYARLRRAHRERT---APNERA-GADLPEGIVRLYGLHTVRAAIDNPARSI 60 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 Q+L T+NA RL PFPV+ V P+ ID +VG +AVHQG+ +E Sbjct: 61 RQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPFSG 120 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ L++VLD V DPHN+GAI+RSAVAF D ++TT R+SP+ES VLAK+ASGALEHI Sbjct: 121 LEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEHID 180 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +I + NL +A++++H+ GF T+GL S+ + LE+ ++ KIAL+LG+EGKGLR KT+ET Sbjct: 181 HIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRETV 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++A L MPG I +LNVSNAAAVALYI + A+ Sbjct: 241 RALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274 >gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C] Length = 272 Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 143/273 (52%), Positives = 185/273 (67%), Gaps = 11/273 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKI 68 LKDSHYA+LRR +R+ K SF Q + + QP E ++LYG+H V AAL NP R + Sbjct: 2 LKDSHYARLRRRYRNTKG--SFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVL 59 Query: 69 FQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 L AT NAL RL ++N+ PV + P+ ++ VG+EAVHQG+ LET PL S L Sbjct: 60 RHLYATPNALKRLGINESNIA--CPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLS 117 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + N+ L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I Sbjct: 118 ELTNTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELI 177 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 YI + NL LQ++H F + GL S+ K PLE +K KI+LILGAEGKGLR KT+E Sbjct: 178 EYITVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTREN 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A S+A L +PG IK+LNVSNAAA+ALY + Sbjct: 238 AYSLARLDLPGDIKSLNVSNAAAIALYAVHKYL 270 >gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 272 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/272 (51%), Positives = 183/272 (67%), Gaps = 11/272 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69 KDSHYA+LRR +RD K SF Q + + QP E ++LYG+H V AAL NP R + Sbjct: 3 KDSHYARLRRRYRDTKG--SFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILR 60 Query: 70 QLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L T NAL RLD ++N+ P+ P+ ++ VG+EAVHQG+ LET PL S +L Sbjct: 61 HLYTTPNALKRLDINESNIA--CPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSE 118 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + N+ L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I Sbjct: 119 LTNTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIE 178 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 YI + NL ALQ++H F + GL S+ K PLE + KI+LILGAEGKGLR KT+E Sbjct: 179 YITVRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENV 238 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S+A L +PG IK+LNVSNAAA+ALY + Sbjct: 239 YSLARLDLPGDIKSLNVSNAAAIALYAVHKYL 270 >gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYK---KMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQL 71 ++SHYA+LRR +RD K S N K + S + + LYG+H+V AAL NP R L Sbjct: 7 QNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKRIFKCL 66 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 T+NAL RL+ + +P PV P+ +D +VG EAVHQG+ LET+PL L + N Sbjct: 67 YVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKLSELTN 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE I YI Sbjct: 126 TDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEMIHYIT 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL + LQ++H GF + GL S+ +PLE + KIAL+LGAEGKGLR KT+ET ++ Sbjct: 186 VRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRETVCAL 245 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L MPG IK+LNVSNAA +ALY+ + Sbjct: 246 ARLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] Length = 235 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 164/224 (73%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 LYG+HTV AAL+NP RKI ++L T+NA RL+ + F + V P+ IDKI G +AV Sbjct: 3 LYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSDAV 62 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ +E PL LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+SP Sbjct: 63 HQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSP 122 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ES VLAKSASGALEHI I + NL DAL ++H GFQTIGL SD LE D+IA Sbjct: 123 QESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRIA 182 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY Sbjct: 183 LVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLY 226 >gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 276 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYKKM--QSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 ++SHYA+LRR +RD K +SF +K + Q + LYG+H+V AAL NP R + L Sbjct: 7 QNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKRILKCL 66 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 T+NAL RL+ + +P V P+ +D +VG EAVHQG+ LET PL L + N Sbjct: 67 YVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKLSELTN 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V+D + DPHN+GAI+RSAVA +ITT R+SP ES VLAK+ASGALE I YI Sbjct: 126 TDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEMIHYIT 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL +ALQ++H GF + GL S+ KPLE + +KIAL+LGAEGKGLR KT+ET ++ Sbjct: 186 VRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRETVCAL 245 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L MPG IK+LNVSNAA +ALY+ + Sbjct: 246 TRLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771] Length = 254 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 166/223 (74%), Gaps = 3/223 (1%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKI 104 P+ YG+HTV AAL+NP RK +L T+NALARL+ D L F + V P IDK+ Sbjct: 19 PDQGLSYGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKV 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +G EA+HQG+ LET PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +IT Sbjct: 77 LGPEAIHQGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVIT 136 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 T+R+SP+ES VLAKSASGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE Sbjct: 137 TQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTF 196 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 DK+AL+LG+EGKGLR KT+ET T++A L MPG IK+LNVSN Sbjct: 197 SGDKVALVLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239 >gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] Length = 271 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 135/260 (51%), Positives = 176/260 (67%), Gaps = 4/260 (1%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 KDSHYA+LRR +RD K Q S H Q E ++LYG+H V AAL NP R + L AT Sbjct: 7 KDSHYARLRRQYRDTKGF--LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRHLYAT 64 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 NAL RL+ + + P+ P+ ++ VG EAVHQGL LET L S +L + N+ L Sbjct: 65 PNALKRLNINES-SLSCPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELTNTDL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI + N Sbjct: 124 IIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVQN 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L+ AL++++ F + GL S+ + PLE + +KI+L+LGAE KGLR KT+ET +A L Sbjct: 184 LSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYKLARL 243 Query: 255 HMPGIIKALNVSNAAAVALY 274 MPG IK+LNVSNAA +ALY Sbjct: 244 DMPGDIKSLNVSNAATIALY 263 >gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 276 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/269 (49%), Positives = 184/269 (68%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYKK-MQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQL 71 ++S++A LRR +RD K + S + + ++ P E + LYG+H V+AAL NP+R + L Sbjct: 7 RNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVLECL 66 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 AT NAL RL+ + P P ++ P+ +D ++G +AVHQG+ LET PL S L + + Sbjct: 67 YATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSELTH 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE I YI Sbjct: 126 TDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMIDYIT 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL +AL+++H F + GL S+ KPLE + KIALILGAEGKGLR KT+ET ++ Sbjct: 186 VRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETVCAL 245 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L MPG IK+LNVSNAA +ALY T + Sbjct: 246 ARLDMPGNIKSLNVSNAATIALYATHKYL 274 >gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3] Length = 252 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 166/238 (69%), Gaps = 14/238 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGK Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252 >gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 130/259 (50%), Positives = 173/259 (66%), Gaps = 11/259 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69 +DS YA+LRR +RD K SF Q S + QP ++LYG+H V AAL NP R + Sbjct: 7 QDSRYARLRRQYRDIKG--SFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILR 64 Query: 70 QLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT NAL RL+ ++N+P + + P+ ++ VG EAVHQG+ LET PL S +L Sbjct: 65 HLYATPNALKRLNINESNIP--CSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSE 122 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I Sbjct: 123 LTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIE 182 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 YI + NL+ AL+++ F + GL S+ PLE + +KI+LILGAEGKGLR KT+E Sbjct: 183 YITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENV 242 Query: 249 TSMAHLHMPGIIKALNVSN 267 S+ L +PG IK+LNVSN Sbjct: 243 YSLVRLDLPGDIKSLNVSN 261 >gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 274 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 130/274 (47%), Positives = 173/274 (63%), Gaps = 17/274 (6%) Query: 16 KDSHYAKLRRNHRDYK------KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 K HY +L+R D K +M+ + RH + ++LYG+H+V AAL NP R Sbjct: 7 KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRHGT----IYLYGLHSVHAALKNPKRVFE 62 Query: 70 QLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L T NAL RL N+P P P+ P+ +D VG +AVHQG+ LET PL L Sbjct: 63 HLYITPNALKRL----NIPESDLPCPITLCLPKQLDSFVGNDAVHQGIVLETEPLKPCQL 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVAF + +ITT R+SP ES VLAK+ASGALE Sbjct: 119 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAASGALEM 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL + LQ++H GF + GL S+ PLE + +KIAL+LGAEGKGLR KT+E Sbjct: 179 IHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLRKKTRE 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ L MPG IK+LNVSNAA +ALY + Sbjct: 239 NVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272 >gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1] Length = 276 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 136/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQP---ENLFLYGVHTVSAALNNPSRKIFQL 71 K+S++ RR +RD K + +H S P ++LYG+H+V AL NP R L Sbjct: 7 KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNPKRVFNHL 66 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 AT NAL RL+ + P P+K PP+ +D +VGK+AVHQG+ LET L L + N Sbjct: 67 YATPNALKRLNITES-DVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPRHLSELTN 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 126 TNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGALELIDYIT 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL +AL+++H GF ++GL S+ + PLE + KIALILGAEGKGLR KT+ET S+ Sbjct: 186 VRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKTRETVHSL 245 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L++PG IK+LNVSNAAA+ALY N+ Sbjct: 246 ARLNIPGDIKSLNVSNAAAIALYAAHNYL 274 >gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 272 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/273 (47%), Positives = 169/273 (61%), Gaps = 13/273 (4%) Query: 16 KDSHYAKLRRNHRD-----YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ HYA L+ RD ++ QK+ Q + LYG HTV+AAL NP R Sbjct: 3 KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQ-GTIRLYGFHTVNAALKNPKRVFGH 61 Query: 71 LLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 L T NAL RL N+P P V P+ +D +VG +AVHQG+ LET L L Sbjct: 62 LYITLNALKRL----NIPKSDLPCSVTLYSPKQLDSLVGSDAVHQGIILETESLKPCQLS 117 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + N+ L++V+D + DPHN+GAI+RSA+AF +ITT R+SP ES VLAK+ASGALE I Sbjct: 118 ELTNTDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEII 177 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 YI + NL + LQ++H GF + GL S+ LE + KIAL+LGAEGKGLR KT+ET Sbjct: 178 NYITVRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRET 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ L MPG IK+LNVSNAA +ALY+ + Sbjct: 238 VCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 270 >gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 119/254 (46%), Positives = 165/254 (64%), Gaps = 1/254 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R+++ + +K+R TS LYG HTV+AAL NP R+I +LL T+NA RL + N+ Sbjct: 28 RNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPRRRIRKLLVTENAARRLTHE-NI 86 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + V P ID+ +G +AVHQGL E PL SP ++ + +++VLD + DPHN+ Sbjct: 87 DTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIETLTQEGIVLVLDQITDPHNV 146 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA AFS I+TT R+SP + VLAKSASGALE +P + + NL AL ++ GF Sbjct: 147 GAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALEIVPLVLVQNLARALAGLNDRGF 206 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+GL S + L + +AL+LGAEGKGLR T++T +++A L MPG IK+LNVSN Sbjct: 207 MTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTRDTCSAVARLDMPGHIKSLNVSN 266 Query: 268 AAAVALYITQNHFA 281 AA +ALYI + Sbjct: 267 AAVLALYIGASRLG 280 >gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] Length = 275 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 1/269 (0%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 F K K ++ R+ K+ + R + LYG HTV AAL NP R I +LL Sbjct: 4 FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 ++NA RL D N+ P + V P ID+ +G +AVHQGL E PL P LD + Sbjct: 64 LSENAARRL-ADENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL ++ GFQT+GL S+ L + +AL+LGAEGKGLR T++T +++A Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 L MPG IK+LNVSNAAA+ALYI + Sbjct: 243 RLDMPGEIKSLNVSNAAALALYIGASRLG 271 >gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] Length = 289 Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 115/276 (41%), Positives = 177/276 (64%), Gaps = 13/276 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ--------SFNQ----KSRHTSQPENLFLYGVHTVSAAL 61 S S ++ + N R YKK + SF++ + + ++ ++YG+HT+ AA Sbjct: 9 STGGSRWSPTQGNDRPYKKKRPDGKSSGGSFSKGKPWQKKSAAEDGPFYIYGLHTIEAAF 68 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NP RK +L+ T+NAL RL+ + NL PV+ P+ IDK+VGK+AVHQG AL L Sbjct: 69 KNPERKRHKLVVTQNALRRLE-ERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDAL 127 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E VLAK+AS Sbjct: 128 PEYGPEELKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTAS 187 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GAL+ I ++RI N++ +++M G+Q I L S+ + +E DK L+LG+EGKG+R Sbjct: 188 GALDMIKHVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVR 247 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++ ++A L MPG IK+LNVSNAA ++LY+ + Sbjct: 248 EGVRKSCDTLARLDMPGEIKSLNVSNAAILSLYVAR 283 >gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 259 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 114/251 (45%), Positives = 158/251 (62%), Gaps = 2/251 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R RD + ++++ + + LYG H V+ AL NP R + +LLAT+NALARL Sbjct: 5 RTAPRDRRHRSGADRRAAPAGD-DRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P + V P I +VG +AVHQGL LE PL +P D + +L+ LD + D Sbjct: 64 ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A AF+ I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL + Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF IGL S++ PL+Q + ++LGAEGKGLR +T+E MA L PG IK+L Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242 Query: 264 NVSNAAAVALY 274 NVSNAAA+ LY Sbjct: 243 NVSNAAAITLY 253 >gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 159/254 (62%), Gaps = 3/254 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R +++ Q + + + + P + LYG HTV+ AL NP R+I +L T+NA RL D + Sbjct: 26 RKFERPQPWRDREQGSDGP--VILYGWHTVTLALGNPKRRIRKLYLTENAARRL-ADERI 82 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P ID+ +G +AVHQGL E PL SP +D + +++VLD + DPHN+ Sbjct: 83 ETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLPSPDIDTLAAEGMILVLDQITDPHNV 142 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILRSA AF I+TT R+SP + VLAKSASGALE +P I + NL AL ++ GF Sbjct: 143 GAILRSAAAFDVKAIVTTARHSPEATGVLAKSASGALELVPIITVQNLARALTRLDERGF 202 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 QT+GL S + + +AL+LGAEGKGLR T+ET + +A L MPG IK+LNVSN Sbjct: 203 QTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSN 262 Query: 268 AAAVALYITQNHFA 281 AA +ALYI + Sbjct: 263 AAVLALYIGASRLG 276 >gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] Length = 283 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/265 (45%), Positives = 162/265 (61%), Gaps = 3/265 (1%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DSH K R + + N + P LYG HTV+AAL NP R+I +LL T+N Sbjct: 19 DSHARKAGDRKRPPGRGSARNGRETGADGPA--ILYGWHTVTAALANPRRRIRKLLLTEN 76 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL + N+ + V P ID+ +G +AVHQGL E PL SP +D + +++ Sbjct: 77 AARRL-ANENIETRLTPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIDTLAQEGIVL 135 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAI+RSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL Sbjct: 136 VLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 195 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S + L +AL+LGAEGKGLR T+ET ++A L M Sbjct: 196 RALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGLRQLTRETCNAVARLDM 255 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 PG IK+LNVSNAA +ALYI + Sbjct: 256 PGDIKSLNVSNAAVLALYIGASRLG 280 >gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 268 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 150/228 (65%), Gaps = 1/228 (0%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + LYG H V+ AL NP R++ +LLAT+N LARL + P +TV P I +VG Sbjct: 36 DTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELRIAP-ETVRPGEISALVG 94 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AVHQGL LE PL P ++ + +L+ LD + DPHN+GAI+R+A AF+ I+TT Sbjct: 95 PDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTTA 154 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R+SP+ + VLAKSASG LEH+P+I + NL +AL + GF IGL S++ PL + Sbjct: 155 RHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTPT 214 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++LGAEGKGLR +T+E MA L PG IK+LNVSNAAA+ LY Sbjct: 215 RPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLY 262 >gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 111/243 (45%), Positives = 160/243 (65%), Gaps = 1/243 (0%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + R ++ + LYG H+V+ AL NP+R+I +L T+NA RL + N+ + V P Sbjct: 63 RDRDSASDGPVILYGWHSVTMALQNPARRIRKLTLTENAARRLA-EENIETRVTPEIVRP 121 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 Q ID+++ +AVHQGL E PL SP ++ + +++VLD + DPHN+GAILRSA AF+ Sbjct: 122 QEIDRLLSPDAVHQGLLAEADPLPSPDIETLTPEGMVLVLDQITDPHNVGAILRSAAAFA 181 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I+TT R+SP + VLAK+ASGALE +P + + NL AL ++ GFQT+GL S+ + Sbjct: 182 VKAIVTTARHSPEATGVLAKAASGALELVPVVTVQNLARALTALNERGFQTVGLDSEGSE 241 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +AL+LGAEGKGLR T+ET + +A L MPG IK+LNVSNAAA++LY+ + Sbjct: 242 DLSNVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLYVGAS 301 Query: 279 HFA 281 Sbjct: 302 RLG 304 >gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 281 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTVS AL NP+R+ ++LAT+NA RL + P P + V P IDK++G +A Sbjct: 48 LLYGWHTVSEALANPARRFRKILATENAANRLQ-EEGFPLPVAPEIVRPSEIDKLLGSDA 106 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E L SP L V S L++VLD + DPHN+GAI+RSA AF+ I+TT R+S Sbjct: 107 VHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAIVRSAAAFAVGAIVTTARHS 166 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASG LEH+P+ ++NL AL+++ + G +GL S+ LE + Sbjct: 167 PVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVVGLDSEGPADLEDTAMRPPM 226 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA++L I + + Sbjct: 227 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGIARRALKR 279 >gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris BisA53] Length = 276 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 45 QPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +PE LYG HTV AAL NP R+I L T+NA RL D N+P + V P ID+ Sbjct: 35 RPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRPSAIDQ 93 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +G +AVHQGL E PL SP +D++ +++VLD + DPHN+GAILRSA AF+ I+ Sbjct: 94 RLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFAVKAIV 153 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T R+SP + VLAKSASGALE +P + + NL AL +++ GF TIGL S+ L Sbjct: 154 ITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDDDLASI 213 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LGAEGKGLR T++T ++A L +PG IK+LNVSNAAA+ALYI + Sbjct: 214 ELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALYIGASRLG 271 >gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] Length = 275 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/265 (44%), Positives = 165/265 (62%), Gaps = 1/265 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +S +++ R + F + +R + LYG HTV+AAL NP RK +L T+N Sbjct: 7 NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A AR D N+ + V P ID+ +G +AVHQG+ E L +P +D + +++ Sbjct: 67 A-ARKLADENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL+ Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S+ + L +AL+LGAEGKGLR T++T T++A L M Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 PG IK+LNVSNAAA+ALYI + Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270 >gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] Length = 297 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 151/233 (64%), Gaps = 1/233 (0%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG HTVS AL NP R+I +L T+NA RL D ++ + V P ID+ +G + Sbjct: 62 VILYGWHTVSLALANPKRRIRKLYLTENAARRL-ADEHIETRVTPEIVRPSQIDQRLGPD 120 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 AVHQGL E PL SP +D + +++VLD + DPHN+GAILRSA AF I+TT R+ Sbjct: 121 AVHQGLLAEADPLPSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARH 180 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 SP + VLAKSASGALE +P I + NL AL +++ GFQT+GL S + Sbjct: 181 SPEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAVTLRQP 240 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LGAEGKGLR T+ET +++A L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 LALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALYVGASRLG 293 >gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] Length = 287 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/245 (48%), Positives = 163/245 (66%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIV 105 EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A HP ++ +D++V Sbjct: 44 ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103 Query: 106 GKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++VHQGL L+ PLL L + Q+++VLD V DPHN+GAILRSAVA + Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE- 221 + T R+ SE+ VLAKSASGA++ + + I NL+ +L ++ F IGL DS+ PLE Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGL--DSEGPLEV 221 Query: 222 QEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 QE +D K+AL+LGAEGKGLR +T+E T++A L MPG IK+LNVSNAAA++LY+ + Sbjct: 222 QETLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVR 281 Query: 278 NHFAK 282 K Sbjct: 282 AAIKK 286 >gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] Length = 273 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 154/232 (66%), Gaps = 1/232 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+AAL NP R+I +L T+NA AR D N+ + V P ID+ +G +A Sbjct: 40 ILYGWHTVTAALANPERRIRKLWLTENA-ARKLADENIDTKVTPEIVRPGEIDQRLGPDA 98 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQG+ E PL SP +D + +++VLD + DPHN+GAILRSA AF+ I+TT R+S Sbjct: 99 VHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 158 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASGALE +P + + NL+ AL +++ GF T+GL S+ L ++ + Sbjct: 159 PEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSADLAAVELHEPL 218 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALYI + Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASRLG 270 >gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] Length = 273 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 114/232 (49%), Positives = 152/232 (65%), Gaps = 1/232 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+AAL NP+R+I +LL T+NA AR D N+ V P ID+ +G +A Sbjct: 40 ILYGWHTVTAALANPARRIRKLLLTENA-ARKLADENINTRITPDIVRPGEIDQRLGPDA 98 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQG+ E PL SP +D + +++VLD + DPHN+GAI+RSA AF+ I+TT R+S Sbjct: 99 VHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTARHS 158 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASGALE +P + ++NL AL ++ G+ T+GL S+ L + Sbjct: 159 PEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSADLAAVELRQPL 218 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALYI + Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASRLG 270 >gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris CGA009] gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009] gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] Length = 275 Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 156/254 (61%), Gaps = 1/254 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R + F + R + LYG HTV+AAL NP RK +L T+NA RL + N+ Sbjct: 18 RGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTENAARRL-AEENI 76 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P ID+ +G +AVHQG+ E PL P +D + +++VLD + DPHN+ Sbjct: 77 DTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVLVLDQITDPHNV 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL AL +++ GF Sbjct: 137 GAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLARALTELNDRGF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+GL S+ L +AL+LGAEGKGLR T++T ++A L MPG IK+LNVSN Sbjct: 197 LTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDMPGEIKSLNVSN 256 Query: 268 AAAVALYITQNHFA 281 AAA+ALYI + Sbjct: 257 AAALALYIGASRLG 270 >gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] Length = 271 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 160/251 (63%), Gaps = 2/251 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 R KK R PE + LYG+HTV AA N RK +L AT NAL RL+ + Sbjct: 17 RGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLFATDNALRRLE-ERG 75 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + PV+++ P+ +D++V K+AVHQG+ LE PL + + ++ ++L++ LD V DPHN Sbjct: 76 VKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKGARLVLALDQVTDPHN 135 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAILRSAVA D ++TT+R++P E +VLAKSASGAL+ I ++R+ N+ + +M G Sbjct: 136 VGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVRVKNMARFIAEMKDEG 195 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F I L SD LE+ +DK L+LG+EGKG+R +E A L MPG I++LNVS Sbjct: 196 FSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLTARLDMPGEIRSLNVS 255 Query: 267 NAAAVALYITQ 277 NAA ++LY+ + Sbjct: 256 NAAVLSLYVAR 266 >gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] Length = 234 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 1/232 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+AAL NP R I +LL T+NA RL + N+ + V P TID+ +G +A Sbjct: 1 MLYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDA 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E PL SP + + +++VLD + DPHN+GAI+RSA AFS I+TT R+S Sbjct: 60 VHQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHS 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASGALE +P +++ NL AL ++ G+ T+GL S + L + Sbjct: 120 PEATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPL 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL+LGAEGKGLR T++T + +A L MPG IK+LNVSNAA +ALYI + Sbjct: 180 ALVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALYIGASRLG 231 >gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] Length = 277 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 163/261 (62%), Gaps = 5/261 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ---PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R RD K+ + +K PE + LYG+HTV AA N RK +L AT+NA R Sbjct: 17 RPSRDNKRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFANTERKRMKLYATENAQRR 76 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + ++ P++T+ P+ +DK+V ++AVHQG+ LE PL + + ++ ++L++ LD Sbjct: 77 L-AERDVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPAYGPEHLKGARLVLALDQ 135 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAILRSAVA D ++TT+R++P E VLAKSASGAL+ I ++R+ N+ + Sbjct: 136 VTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKNMARFVS 195 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 +M F + L SD LE+ K L+LG+EGKG+R +E +++A L MPG I Sbjct: 196 EMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQGVREACSTLARLDMPGEI 255 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LNVSNAA +ALY+ + Sbjct: 256 RSLNVSNAAVLALYVARQKMG 276 >gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter autotrophicus Py2] Length = 288 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 108/228 (47%), Positives = 150/228 (65%), Gaps = 1/228 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+ A+ NP R+ +L AT+NA+ RL + P P + V P IDK++G +A Sbjct: 56 LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEEGLTP-PIAPEIVRPGDIDKLLGADA 114 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E L SP L + + L++VLD + DPHN+GAI+RSA AF+ I+TT R+S Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P+ + VLAKSASG LEH+P+ ++NL AL ++ G +GL S+ LE + Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA++L + + Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMAR 282 >gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] Length = 275 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 1/233 (0%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG+HTV AA N RK +L AT+NA RL + + PV+ P+ +D++V K+ Sbjct: 43 VLLYGLHTVEAAFANKDRKRLKLYATENAKNRL-QERGVVIDVPVEDKRPKELDRMVTKD 101 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 AVHQG+ LE PL + + ++ ++L++ LD V DPHN+GAILRSAVA D ++TT+R+ Sbjct: 102 AVHQGMILEADPLPAYGAEHLKGARLILALDQVTDPHNVGAILRSAVALDADAVVTTERH 161 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +P E VLAKSASGAL+ I ++R+ N+ + +M GF I L SD LE DK Sbjct: 162 APEEGPVLAKSASGALDMIKHVRVKNMARFITEMKEQGFGCIALDSDGHASLEDTDFTDK 221 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L+LG+EGKG+R +E +A L MPG I++LNVSNAA ++LY+ + Sbjct: 222 TVLVLGSEGKGVRQGVREACGLLARLDMPGEIRSLNVSNAAVLSLYVARQKMG 274 >gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] Length = 274 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/269 (46%), Positives = 161/269 (59%), Gaps = 21/269 (7%) Query: 31 KKMQSFNQKSRHTSQPEN----------------LFLYGVHTVSAALNNPSRKIFQLLAT 74 ++ SF KS H P + LYG HTV+AAL NP RKI +L AT Sbjct: 4 REYSSFKGKSSHRKPPHGRGGRPAWRDRDDHNAPVILYGWHTVTAALLNPKRKIRKLFAT 63 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133 +NAL RL + P P + V P ID+ +G +AVHQGL E PL P LD + Q Sbjct: 64 ENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPL--PALDIAKLPQD 120 Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++VLD + DPHN+GAILRSA AF+ ++TT R+SP + VLAKSASGALE +P + + Sbjct: 121 GIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTV 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL +M GF T+GL S+ L + +AL+LGAEGKGLR T+ET ++A Sbjct: 181 QNLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVA 240 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 L MPG IK+LNVSNA A+ALYI Sbjct: 241 RLDMPGEIKSLNVSNATALALYIGATRLG 269 >gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum SL003B-26A1] gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum SL003B-26A1] Length = 265 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 46 PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 PE + LYG+HTV AA NP R+ +L AT+NAL RL+ P PV+ + P+ +D++ Sbjct: 29 PEGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIRPD-VPVEILAPRALDRM 87 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 V ++AVHQG+ LE L + +D ++ ++L++ LD V DPHN+GAILRSAVA + D ++T Sbjct: 88 VTRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNVGAILRSAVALAADAVVT 147 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 T+R++P E VLAK+ASGAL+ I ++R+ N+ L +M GF + L SD + LEQ Sbjct: 148 TERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGFFRVALDSDGEASLEQTP 207 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 DK L+LG+EGKG+R + +A L MPG I++LNVSNAA +ALY+ + + Sbjct: 208 FGDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSNAAVLALYVARQRMS 264 >gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1 BAC clone 67] Length = 319 Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 110/258 (42%), Positives = 155/258 (60%), Gaps = 12/258 (4%) Query: 35 SFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +F KSR +P + LYG+H+V A NP R+ +++AT+NA+ RL D Sbjct: 30 AFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVKEAFANPRRRFRRIVATENAVQRLTEDG 89 Query: 86 -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 NLP + V P+ I +++ +AVHQGL +E L L + ++++ LD V DP Sbjct: 90 VNLP--LAPELVKPEAIGRLLTPDAVHQGLYVEAERLPLLPLGKLPRDRIILALDQVTDP 147 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILRSA AF G+I T R+SP + VLAK+ASGALEH+P + NL AL + Sbjct: 148 HNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAKAASGALEHVPMAGVQNLARALTTLKD 207 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF IGL S++ + + I L+LGAEG+GLRP T+E + +A L +PG IK+LN Sbjct: 208 EGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGRGLRPSTRELCSHLARLELPGAIKSLN 267 Query: 265 VSNAAAVALYITQNHFAK 282 VSNAAA++LY Q + Sbjct: 268 VSNAAAISLYAVQQAITR 285 >gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] Length = 272 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 151/233 (64%), Gaps = 2/233 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKE 108 LYG HTV+ AL NP RKI +L T+NAL RL D + +L P + V P ID+ +G + Sbjct: 38 ILYGWHTVTLALANPKRKIRKLFVTENALRRLQDENIDLKKLTP-EVVRPSVIDQRLGPD 96 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 AVHQGL E PL + + + +++VLD + DPHN+GAILRSA AF+ ++TT R+ Sbjct: 97 AVHQGLLAEADPLPALDISELPQDGIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARH 156 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 SP + VLAKSASGALE +P + + NL AL +M GF T+GL S+ L + Sbjct: 157 SPEATGVLAKSASGALELVPVVIVQNLARALTEMKEHGFLTVGLDSEGSTNLAETELRAP 216 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LGAEGKGLR T+ET ++A L MPG IK+LNVSNA A+ALYI + Sbjct: 217 LALVLGAEGKGLRQLTRETCGTVARLDMPGEIKSLNVSNATALALYIGASRLG 269 >gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] Length = 270 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 8/250 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 RR R Y Q + R +P + LYG H+V+ AL NP RKI +LLAT+NA Sbjct: 6 RRPARPYHASQR-QPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATENA 64 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 RL+ + ++P + V P ID+++ +AVHQGL E PL + +L S LL+V Sbjct: 65 AKRLE-EESIPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLLV 123 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DPHN+GAI+RSA A I+TT R+SP+ + VLAKSASG LEH+P+ + NL Sbjct: 124 LDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLAR 183 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+++ G Q +GL S+ L +AL+LGAEGKGLR T++T ++A + +P Sbjct: 184 TLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDLP 243 Query: 258 GIIKALNVSN 267 G I +LNVSN Sbjct: 244 GAIVSLNVSN 253 >gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] Length = 269 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 1/228 (0%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P IDK++G Sbjct: 33 DHVVLYGWHPVSQALANAGRHFHRLLATENALARLK-EAGIELPIEPELVRPSAIDKLLG 91 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+R+A AF I+TT Sbjct: 92 PDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA 151 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 152 RHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDAVGPR 211 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 212 RPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLY 259 >gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium extorquens PA1] Length = 268 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/256 (44%), Positives = 156/256 (60%), Gaps = 11/256 (4%) Query: 28 RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 RD + + + + R +QP +++ LYG H VS AL N R +LLAT+NAL Sbjct: 5 RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 ARL +A + P + V P ID+++G +AVHQGL E PL +P DA+ + LL+ L Sbjct: 64 ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLAL 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GAI+R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +A Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF IGL SD+ L+ L+LGAEGKGLR +T E + + G Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242 Query: 259 IIKALNVSNAAAVALY 274 I++LNVSNAAA+ LY Sbjct: 243 AIRSLNVSNAAAITLY 258 >gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] Length = 268 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 11/256 (4%) Query: 28 RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 RD + + + + R +QP +++ LYG H VS AL N R +LLAT+NAL Sbjct: 5 RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 ARL +A + P + V P ID+++G +AVHQGL E PL +P LDA+ + LL+ L Sbjct: 64 ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLAL 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GAI+R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +A Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF IGL SD+ L+ L+LGAEGKGLR +T E + + G Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242 Query: 259 IIKALNVSNAAAVALY 274 I++LNVSNAAA+ LY Sbjct: 243 AIRSLNVSNAAAITLY 258 >gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4] gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4] Length = 268 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 11/256 (4%) Query: 28 RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 RD + + + + R +QP +++ LYG H VS AL N R +LLAT+NAL Sbjct: 5 RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 ARL +A + P + V P ID+++G +AVHQGL E PL +P LDA+ + LL+ L Sbjct: 64 ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLAL 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GAI+R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +A Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF IGL SD+ L+ L+LGAEGKGLR +T E + + G Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242 Query: 259 IIKALNVSNAAAVALY 274 I++LNVSNAAA+ LY Sbjct: 243 AIRSLNVSNAAAITLY 258 >gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 267 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 107/233 (45%), Positives = 153/233 (65%), Gaps = 13/233 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGK 107 ++LYG+H VSAAL NP R+I +L+AT A +LP PV+T+ ID+++ Sbjct: 35 IWLYGIHAVSAALANPERRIRRLVATTEAAK------SLPATKIPVETMERAEIDRLLAP 88 Query: 108 EAVHQGLALETAPLLSPTL-DAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +VHQG+AL PL + T+ D +R +S L++VLD V DPHN+GAILRSA AF Sbjct: 89 GSVHQGIALLVEPLPAITMEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGALA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R++P E+ LAKSASGALE +P +R++N+ AL+ M GF T GL++D+ K L Sbjct: 149 VVAPDRHAPDETGTLAKSASGALERMPLVRVTNVVRALEDMKKGGFWTAGLAADAPKTLA 208 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K+ L+LGAEG+G+R T+E + L M G +++LNVSNAAAVALY Sbjct: 209 EAELSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALY 261 >gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 276 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 109/258 (42%), Positives = 161/258 (62%), Gaps = 7/258 (2%) Query: 22 KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 KL R +++ Q + R S L+LYG+H+V AAL NP+R++ +L+ T+ A Sbjct: 17 KLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARRLRRLVVTEEGEAA 76 Query: 81 LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMV 137 L LPHP+P++ + +D+++G+ VHQG+AL+ PL+ P+L DA++ ++V Sbjct: 77 LA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPSLNDALKRPGPVLV 134 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAILRSA AF +I +R +P E LAK+ASGALE IP +R N+ Sbjct: 135 LDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGALERIPLLRTVNIAR 194 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL + + G +GL + L ++ I N + AL+LGAEG+GLR T+ET + L M Sbjct: 195 ALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRLTRETCDELVSLPM 254 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNVS AAAVALY Sbjct: 255 PGGMESLNVSAAAAVALY 272 >gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5] gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum JF-5] Length = 276 Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 109/258 (42%), Positives = 161/258 (62%), Gaps = 7/258 (2%) Query: 22 KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 KL R +++ Q + R S L+LYG+H+V AAL NP+R++ +L+ T+ A Sbjct: 17 KLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARRLRRLVVTEEGEAA 76 Query: 81 LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMV 137 L LPHP+P++ + +D+++G+ VHQG+AL+ PL+ P+L DA++ ++V Sbjct: 77 LA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPSLNDALKRPGPVLV 134 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAILRSA AF +I +R +P E LAK+ASGALE IP +R N+ Sbjct: 135 LDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGALERIPLLRTVNIAR 194 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL + + G +GL + L ++ I N + AL+LGAEG+GLR T+ET + L M Sbjct: 195 ALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRLTRETCDELVSLPM 254 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNVS AAAVALY Sbjct: 255 PGGMESLNVSAAAAVALY 272 >gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56] Length = 209 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 104/195 (53%), Positives = 135/195 (69%), Gaps = 15/195 (7%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ-------PENLFLYGVHTVSAAL 61 S KD+HYA LRR HRD K+ + QK + P+ ++LYG+HTV AAL Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75 Query: 62 NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +NP RK +L T+NALARL+ D L F + V P IDK++G EA+HQG+ LET P Sbjct: 76 DNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKVLGPEAIHQGVMLETRP 133 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 134 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 193 Query: 181 SGALEHIPYIRISNL 195 SGALE IPYI+I+NL Sbjct: 194 SGALELIPYIQITNL 208 >gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] Length = 270 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 106/226 (46%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG H V AL RK+ L AT+ A R+ A P + V P+ + +G E Sbjct: 34 VVLYGAHAVREALRARRRKLLTLYATEGAAERIAPLAAEAGLTP-QIVDPRALTSRLGDE 92 Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +VHQGL LE PL + + D S +++VLD V DPHN+GAILR+A AF+ D ++ T R Sbjct: 93 SVHQGLLLEARPLPAAEIADIETKSGVVLVLDQVTDPHNVGAILRTAAAFAVDALVMTDR 152 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 SP + VLAK+ASGALEH+ + + NL ALQ++ G +GL S++ PLE+ + Sbjct: 153 NSPELTGVLAKAASGALEHVLIVSVVNLARALQELSQSGRLVVGLDSEAPAPLEETRLQN 212 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 IAL+LGAEGKGLR T+E +A L MPG IK+LNVSNA AVAL Sbjct: 213 PIALVLGAEGKGLRRLTRERCDVLARLDMPGPIKSLNVSNACAVAL 258 >gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/225 (45%), Positives = 144/225 (64%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG H V AL N R + +LLAT+NA ARL+ + + V P I +++G +A Sbjct: 50 VLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRPSDIGRLLGPDA 109 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL LE PL +P LD + LL+ LD + DPHN+GAI+R+A AF GI+TT R++ Sbjct: 110 VHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFGVAGIVTTARHA 169 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASG LEH+P++ + NL +AL ++ GF +GL SD+ + L+ + Sbjct: 170 PGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPESLDALTVARPL 229 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++LGAEGKGLR +T+ +A + G I++LNVSNAAA+ LY Sbjct: 230 VIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLY 274 >gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 267 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 11/232 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++LYG+H V AAL NP R+ +L+AT A L PV+T+ ID+++ Sbjct: 35 IWLYGIHAVCAALANPDRRARRLVATVEAAKSLPATK-----VPVETMERSEIDRLLAPG 89 Query: 109 AVHQGLALETAPLLSPTL-DAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +VHQG+AL PL + T+ D +R S L++VLD V DPHN+GAILRSA AF + Sbjct: 90 SVHQGVALLVEPLPATTIEDVIRMADGAPSALVLVLDQVTDPHNVGAILRSAAAFGALAV 149 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + R++P E+ LAKSASGALE +P +R++N+ L+ + GF T GL++D+ K L + Sbjct: 150 VAPDRHTPDETGTLAKSASGALERMPLVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAE 209 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ L+LGAEG+G+R T+E + L M G +++LNVSNAAAVALY Sbjct: 210 ANLSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALY 261 >gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] Length = 278 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 8/238 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDK 103 PE + +YG H V AL RK+ L AT+ AL R+ A+L V + V + + + Sbjct: 38 PEVVTIYGAHAVREALKARRRKLLALYATETALPRI---ADLARGAGVEPRLVDGRDLSR 94 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +G EAVHQGL LE PL + + S +++ LD + DPHN+GAILR+A AF D + Sbjct: 95 HLGDEAVHQGLLLEARPLPEAGVGDIEPKSGIVLALDQITDPHNVGAILRTACAFGVDAL 154 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I T+R+SP + VLAK+ASGALEH+ + + NL AL ++ G+ +GL S+ +PLE Sbjct: 155 IITERHSPEFTGVLAKAASGALEHVTIVSVVNLARALDELRGAGYGVVGLDSEGAEPLET 214 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LGAEGKGLR T+E ++A L +PG IK+LNVSNA A AL + HF Sbjct: 215 IALPKPLALVLGAEGKGLRRLTRERCDAIARLDLPGPIKSLNVSNACAAALSVA--HF 270 >gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] Length = 257 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 105/246 (42%), Positives = 149/246 (60%), Gaps = 7/246 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + T E ++L+G+H V AL N +R+ QL+ T NA A+L DA + V Sbjct: 11 EQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGIAPEVVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154 P+ + + +VHQG ALE PL +L D S+ +M+LD V DPHN+GAILRSA Sbjct: 70 PRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVGAILRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +I T+ +S E+ LAKSASGALE PY+R+ NL D ++ + G+ +GL Sbjct: 130 EVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYIVLGLDG 189 Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +++ LEQ I+ + IAL+LGAEG GLR KT+ET S+ + G +LNVSNAAA+ Sbjct: 190 EARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAI 249 Query: 272 ALYITQ 277 ALY T+ Sbjct: 250 ALYATR 255 >gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 110/273 (40%), Positives = 160/273 (58%), Gaps = 27/273 (9%) Query: 29 DYKKMQSFNQK-SRHTSQPE----------------NLFLYGVHTVSAALNNPSRKIFQL 71 D + + N + SRH S P L+LYG H V AAL N +RKI ++ Sbjct: 27 DCSEGDTMNHRESRHKSAPRRDPAKGGERPAKLPSNQLWLYGAHAVLAALANKARKIRRI 86 Query: 72 LATKNAL---ARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + T AL A A P P +T Q +D+++ AVHQG+A+ L SP ++ Sbjct: 87 VLTVEALRSHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLESPGIE 146 Query: 128 AV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + R+ ++MVLD V DPHN+GAILRSA AF ++ T R+SP E+ LAKSAS Sbjct: 147 DIGRLAQNRDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTLAKSAS 206 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GALE +P +R++N+ AL+++ GF T GL+ ++ + L Q + KIAL++GAEG+GLR Sbjct: 207 GALEVMPLVRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAEGEGLR 266 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+E + L M ++++LNVSNAAA++LY Sbjct: 267 RLTREHCDHLVKLPMSDLVESLNVSNAAAISLY 299 >gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter denitrificans OCh 114] Length = 257 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 147/246 (59%), Gaps = 7/246 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + E ++L+G+H V AL NP+R+ QL+ T NA A+L P + V Sbjct: 11 EQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAGAIEAAGITP-EVVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + +VHQG ALE PL +L+ V +++LD V DPHN+GAILRSA Sbjct: 70 PRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVGAILRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +I T+ +S E+ LAKSASGALE PY+R+ NL+D ++ + G+ +GL Sbjct: 130 EVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYIVLGLDG 189 Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ LEQ I+ + +AL+LGAEG GLR KT+ET S+ + G +LNVSNAAA+ Sbjct: 190 EASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAI 249 Query: 272 ALYITQ 277 ALY TQ Sbjct: 250 ALYATQ 255 >gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] Length = 285 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 143/222 (64%), Gaps = 4/222 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L L+G+H V AAL NP R++ +L+ T+NA RL +A P + V P+ +D+++G + Sbjct: 50 LVLFGLHAVEAALKNPKRRVHRLMLTENAERRL-IEAVGPITAKIDRVTPRDLDRLLGPD 108 Query: 109 AVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 VHQG+ALET PL P D + + + L+VLD V DPHN+GAILRS+ F G++ T Sbjct: 109 TVHQGVALETEPLPEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMT 168 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R+SP + VLAKSASGALE IP ++NL A++++ GF +GL +++ +E Sbjct: 169 HRHSPPLNGVLAKSASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDW 228 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + AL++G+EGKGLR T++T ++A + G + +LNVSN Sbjct: 229 SRPTALVMGSEGKGLRELTRKTCDTLARISTDGPVASLNVSN 270 >gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 108/233 (46%), Positives = 144/233 (61%), Gaps = 12/233 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVK--TVPPQTIDKI 104 +LYG H V AAL NP+R +L+ T+NA LAR A LP PV+ + + I + Sbjct: 53 YLYGFHAVLAALANPARLAERLVLTRNAETELAR--QGARLPADLPVRLEIMENEDIAAL 110 Query: 105 VGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + AVHQG+AL +PL P LD A + ++VLD V DPHN GAILRSA F Sbjct: 111 LPAGAVHQGIALRASPL--PDLDVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGA 168 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT+R SPS VLAK+ASGALE + RI+NL A++++ GF+ +GL + + L Sbjct: 169 LITTERNSPSLGGVLAKAASGALELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLP 228 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++AL+LGAEG GLR T+E +A L G +K+LNVSNAAAVALY Sbjct: 229 DLKLSPRVALVLGAEGAGLRRLTREHCDLLARLPAAGGMKSLNVSNAAAVALY 281 >gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] Length = 263 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 154/255 (60%), Gaps = 19/255 (7%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPF 91 ++++ + E ++L+G+H V AL NP+R+ + + TKNA RL ++ P P Sbjct: 11 ERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP- 69 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPH 145 + P+ + ++VHQG ALE PL + D V N +++LD V DPH Sbjct: 70 --EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGV-NPPRVVLLDKVTDPH 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILRSA F +I R++ E+ LAK+ASGA+E PY+R+ NL DA+ ++ + Sbjct: 127 NVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAM 186 Query: 206 GFQTIGLSSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ +GL ++++ +EQ E K D+ IAL+LGAEG GLR KT+ET ++ + G + Sbjct: 187 GYLVLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGS 246 Query: 263 LNVSNAAAVALYITQ 277 LNVSNAAAVALY+++ Sbjct: 247 LNVSNAAAVALYVSR 261 >gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 160 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PFPV+ V P+ IDK G EAVHQG+ +E PL + L +R S LL+VLD V DPHN+GA Sbjct: 3 PFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGA 62 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSAVAF +ITT R+SP E+ VLAK+ASGALE I +I + NL +A++++H+ GFQT Sbjct: 63 IMRSAVAFGAGALITTSRHSPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQT 122 Query: 210 IGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243 IGL DS+ PLE E + ++IAL+LGAEG GLR K Sbjct: 123 IGL--DSQGPLEMEATLSGNRIALVLGAEGXGLRQK 156 >gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] Length = 291 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 21/281 (7%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 D + RD KK K R+ + E ++L+G+H V AL NP R+ + + Sbjct: 14 FGDGRHEGANAKDRDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFV 73 Query: 73 ATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 TKNA RL ++ P P + P+ + ++VHQG ALE PL + Sbjct: 74 VTKNAFDRLGDAVSIGLKDGGPEP---EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKI 130 Query: 127 ------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D V N +++LD V DPHN+GAILRSA F +I R++ E+ LAK+A Sbjct: 131 EDRCMGDGV-NPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTA 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDK-IALILGAEG 237 SGA+E PY+R+ NL DA+ ++ G+ +GL ++++ +EQ + K D+ IAL+LGAEG Sbjct: 190 SGAMERQPYLRVRNLADAIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEG 249 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GLR KT+ET ++ + G +LNVSNAAAVALY T++ Sbjct: 250 PGLRDKTKETCDALVKIDFAGEFGSLNVSNAAAVALYATRS 290 >gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] Length = 251 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 142/237 (59%), Gaps = 13/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTIDK 103 +YG+H V+AA NP R+ L T++ALA LD + L P P + + +DK Sbjct: 10 LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDP-TFLEKEELDK 68 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ AVHQG+AL+TAPL ++ V L++VLD V DPHN+GAI+RSA AF Sbjct: 69 LLPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAF 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I R++P + VLAK+ASGA++ +P +R++NL AL + GF T+GL Sbjct: 129 GARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGA 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + + AL+LG+EG+GLR T E +A L G + +LNVSNAAAVALY Sbjct: 189 RPLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALY 245 >gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 142/234 (60%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA N+ PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL LS LD + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] Length = 290 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 7/243 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 44 EQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVID 102 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSA 154 P+ + + K++VHQG ALE PL LD +++ +++LD V DPHN+GAILRSA Sbjct: 103 PRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRSA 162 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 163 EVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLDG 222 Query: 215 DSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA+ Sbjct: 223 EAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAI 282 Query: 272 ALY 274 ALY Sbjct: 283 ALY 285 >gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] Length = 290 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 7/245 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 44 EQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVID 102 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSA 154 P+ + + K++VHQG ALE PL LD +++ +++LD V DPHN+GAILRSA Sbjct: 103 PRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRSA 162 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 163 EVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLDG 222 Query: 215 DSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA+ Sbjct: 223 EAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAI 282 Query: 272 ALYIT 276 ALY + Sbjct: 283 ALYAS 287 >gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 263 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 5/220 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L+G H V AAL NP R+ +L AT+ +A LD LP FPV+ Q + ++V K+A Sbjct: 33 LWGRHAVEAALKNPDRQHRKLWATREGVASLD--GELPPDFPVEYADVQDLARLVAKDAP 90 Query: 111 HQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQGL LE A L LD V + ++ ++VLD V DPHN+GAI+RSAVAF+ ++T R Sbjct: 91 HQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAVAFNAAALVTQDR 150 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 ++P E V+ KSASGALE +P+IR+ NL A+++M G+ IGL+ + + + Sbjct: 151 HAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGHTDTTFAEALPAG 210 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +A++LGAEG+G+R + ++A L + I++LNVSN Sbjct: 211 PVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250 >gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 249 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA N+ PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL L+ LD + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA N+ PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL L+ LD + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] Length = 262 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 147/247 (59%), Gaps = 11/247 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +++R S E ++L+G+H V AL NP R +L+ T+NA +L DA V+ Sbjct: 11 EQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAASGMEVELSD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAI 150 P+ + E+VHQG ALE PL +L V N Q L++LD V DPHN+GAI Sbjct: 70 PRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRVTDPHNVGAI 129 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRS+ F ++ +R+S E+ LAK+ASGALE PYIR+ NL DA+ ++ + G+ + Sbjct: 130 LRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDELRAMGYLLL 189 Query: 211 GLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL + ++ +EQ I+ + +A+++GAEG GLR KT+E + + G +LNVSN Sbjct: 190 GLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVSN 249 Query: 268 AAAVALY 274 AAAVALY Sbjct: 250 AAAVALY 256 >gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 265 Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 136/220 (61%), Gaps = 5/220 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L+G H V AAL NP+R+ +L AT+ + LD LP F V+ + ++V K+A Sbjct: 33 LWGRHPVEAALKNPARQHRKLWATREGIDSLD--GELPPDFAVEYAEVTDLARLVAKDAP 90 Query: 111 HQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQGL LE PL LD V N ++ ++VLD V DPHN+GAILRSA AF I+T R Sbjct: 91 HQGLVLECEPLEDVFLDDVANGDPARPVVVLDQVTDPHNVGAILRSAAAFGAACIVTQDR 150 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 ++P E VLAKSASGALE +P++R+ NL AL ++ G+ IGL+ +++ L + Sbjct: 151 HAPPEGGVLAKSASGALETVPWVRVVNLARALDELADLGYWRIGLAGEAEATLSGSLTTG 210 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +AL+LGAEG+G+R + ++A L + I++LNVSN Sbjct: 211 ALALVLGAEGEGMRHNIAQHCDTLAKLPITSAIESLNVSN 250 >gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] Length = 284 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 100/266 (37%), Positives = 152/266 (57%), Gaps = 10/266 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 AK+ + K + + Q R +Q E ++L+G+H V AL NP+R+ +L+ T+NAL R Sbjct: 21 AKVGTQMKKPKWVIAKEQAKRQAAQ-ETVWLFGLHAVRDALENPARQKLRLVVTRNALER 79 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LL 135 L DA + P+ + ++VHQG ALE PL +L+ V + Sbjct: 80 LG-DAVAQSGMEPEISDPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRI 138 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DPHN+GAILRSA F ++ +R+S E+ LAK+ASGALE PY+R+ NL Sbjct: 139 VLLDRVTDPHNVGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNL 198 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMA 252 DA++ + G+ +GL ++ +E ++ + +AL++GAEG GLR KT+ET + Sbjct: 199 ADAMEALKGMGYLVLGLDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELV 258 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + +LNVSNAAAVALY + Sbjct: 259 KIDAAAGFGSLNVSNAAAVALYAVKG 284 >gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 9/249 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +++R + E ++L+G+H V AL NP R+ +L+ T+NA +L DA + V Sbjct: 11 EQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAASGIEPELVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + +VHQG+ALE PL L+ N ++L+ LD V DPHN+GAILRS Sbjct: 70 ARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLL-LDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +GL Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188 Query: 214 SDSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + +E + K D+ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 189 GEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY +Q H Sbjct: 249 IALYASQPH 257 >gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] Length = 258 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + ++L+G+H V AL NP+R+ QL+ T NA A+L+ DA + V Sbjct: 11 EQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKLE-DAIAEAGIAPEVVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + +VHQG LE PL L+ V + L++LD V DPHN+GAILRSA Sbjct: 70 PRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVGAILRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I TK +S E+ LAK+ASGALE PY+R+ NL DA++ + G+ +GL Sbjct: 130 EVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYLVLGLDG 189 Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + +E ++ + +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA+ Sbjct: 190 EATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNVSNAAAI 249 Query: 272 ALYITQ 277 ALY ++ Sbjct: 250 ALYASR 255 >gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] Length = 259 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 9/250 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ S E ++L+G+H V AL NP+R +L+ TKNA +L DA + Sbjct: 11 EQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKLQ-DAIDAAGITPEMAD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL +L+ V + L++LD V DPHN+GAILR Sbjct: 70 PRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAILR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I + S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +GL Sbjct: 130 SAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLGL 189 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + +++ ++ + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAA Sbjct: 190 AGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNAA 249 Query: 270 AVALYITQNH 279 AV+LY ++ Sbjct: 250 AVSLYASRER 259 >gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] Length = 258 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 7/243 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA +L DA + + Sbjct: 12 EQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVID 70 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + + ++VHQG ALE PL L R + +++LD V DPHN+GAILRSA Sbjct: 71 PRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRSA 130 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + GF +GL Sbjct: 131 EVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLDG 190 Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++++ +E ++ + +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA+ Sbjct: 191 EAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAAI 250 Query: 272 ALY 274 ALY Sbjct: 251 ALY 253 >gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] Length = 271 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVG 106 + L+G H V AAL NP+R +L T+ A+ + D DA LP PV+ + ++V Sbjct: 34 IRLWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVA 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 K+A HQGL L+ APL LD V + ++VLD V DPHN+GAILRS AF ++ Sbjct: 94 KDAPHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALV 153 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T R++P ES LAKSASGALE +P++R+ NL+ AL++M G+ IGL D K Sbjct: 154 TQDRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAA 213 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 214 LPSGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257 >gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 139/239 (58%), Gaps = 2/239 (0%) Query: 38 QKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ R P +LYG H V AAL+NP R + QLL T A A L+ P + V Sbjct: 61 ERGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQRV 120 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ID I G++AVHQG+AL L +P L D V +++LD V DP NIGAILRSA Sbjct: 121 DRARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSAA 180 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF +I R +P E+ LAK+ASGALE +P +R+ NL+ + + S G T+GL + Sbjct: 181 AFGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDAG 240 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++AL+LGAEG GLR T+E +A L M G +++LNVSNAAAVALY Sbjct: 241 GGILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALY 299 >gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 147/247 (59%), Gaps = 19/247 (7%) Query: 37 NQK-SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 NQ+ SR + ++L+G H V AAL NP+RK LLAT+NA +L P Sbjct: 23 NQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENAAQKL----------PAGV 72 Query: 96 VPPQ-----TIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 + PQ ID + AVHQG+AL PL L+ V + + VLD V+DPHN+G Sbjct: 73 ISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRIAVLDQVSDPHNLG 132 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA AF +G++ R +P + ++AKSA+GA+E + IR N+ AL+++ F Sbjct: 133 AIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNIARALEQLAEADFH 192 Query: 209 TIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+GL+ +S + L++ +K K+A++LGAEG GLRP + + +A + + +++LNVSN Sbjct: 193 TVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARIPIAAQMESLNVSN 252 Query: 268 AAAVALY 274 AAA+A Y Sbjct: 253 AAAIAFY 259 >gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] Length = 294 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 144/244 (59%), Gaps = 9/244 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ + E ++L+G+H V AL NP+R+ +L+ T NA +L DA + + Sbjct: 48 EQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVID 106 Query: 98 PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG LE PL L+ ++L+ LD V DPHN+GAILRS Sbjct: 107 PRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLL-LDRVTDPHNVGAILRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285 Query: 271 VALY 274 +ALY Sbjct: 286 IALY 289 >gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510] Length = 311 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 21/288 (7%) Query: 5 SKKKSEKIFSL---KDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 S++++E+ + + H A R++ D + + K + LYG+H V+AA Sbjct: 20 SERQAERTGAKPQHQPQHGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAA 79 Query: 61 LNNPSRKIFQLLATKNALARLD--------WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 NP R+I +LL T + A L+ P P V +D+++ AVHQ Sbjct: 80 WTNPERRIHRLLVTDSGRAALEPVIAEARARGLQRPEASPADRV---ELDRMLPPGAVHQ 136 Query: 113 GLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 G+ ++ +PL ++ + N S +++ LD V DPHN+GAILRSA AF ++ T+ Sbjct: 137 GIVIDASPLPELGIEDLCNELASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTE 196 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P + VLAKSASGALE +P +R++NL AL + GF ++GL+ L + Sbjct: 197 RHAPETTGVLAKSASGALEAVPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLT 256 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L++GAEG GLR T E ++A L G + +LNVSNAAAVALY Sbjct: 257 GKTVLVMGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALY 304 >gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2083] gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 143/245 (58%), Gaps = 9/245 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + E ++L+G+H V AL NP R +L+ T+NA+ +L P + Sbjct: 11 EQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSELEP-EMCE 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-----LDHVNDPHNIGAILR 152 P+ + + ++VHQG ALE PL L+ V V LD V DPHN+GAILR Sbjct: 70 PRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHNVGAILR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I T R S E+ LAK+ASGALE PY+RI NL ++++ + G+ IGL Sbjct: 130 SAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMGYLVIGL 189 Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++++ ++ E K D+ IAL++GAEG GLR KT++T ++ + G +LNVSNAA Sbjct: 190 DGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSLNVSNAA 249 Query: 270 AVALY 274 AVALY Sbjct: 250 AVALY 254 >gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] Length = 257 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 7/248 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +++R + E ++L+G+H V AL NP R+ +L+ T+NA +L P + Sbjct: 11 EQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFAGITP-EIAD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + +VHQG ALE PL L R +++LD V DPHN+GAILRSA Sbjct: 70 PRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVGAILRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +GL Sbjct: 130 EVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLDG 189 Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ +E + D+ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA+ Sbjct: 190 EADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAI 249 Query: 272 ALYITQNH 279 ALY ++ Sbjct: 250 ALYASKTR 257 >gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 249 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L+G H V AAL NP RK +L AT+ + LD LP FPV+ +D++V ++A Sbjct: 17 LWGRHAVEAALLNPERKHRKLWATREGIESLD--GELPPDFPVEYADTPDLDRLVARDAP 74 Query: 111 HQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQGL LE APL L+ + + + +++LD V DPHN+GAILRSA AF I+T Sbjct: 75 HQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSAAAFDAAAIVTQD 134 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES V+AKSASGALE +P++R+ NL AL + GF IGL+ +++ L + I Sbjct: 135 RHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAGEAEMTLAEAIPT 194 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +AL+LGAEG GLR ++A L + I++LNVSN Sbjct: 195 GPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235 >gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] Length = 318 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 153/269 (56%), Gaps = 13/269 (4%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQ 70 +F + H RR ++ S + S P +L+G H V+AALNNP R + Sbjct: 37 VFMRQPRHGRSARR-----PRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYER 91 Query: 71 LLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-L 126 LL T+ AL P + V Q +D ++G +AVHQG+AL A +L P L Sbjct: 92 LLVTEENHPALEEATRSGRNVRVTP-ELVQRQRLDDLLGPDAVHQGVAL-LARILPPMPL 149 Query: 127 D-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D A+ ++VLD V DP NIGAILRSA AF ++ R +P E+AVLAK+ASGALE Sbjct: 150 DEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALE 209 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P +R NL+ A++++ G T+GL + ++AL+LGAEGKGLR T+ Sbjct: 210 TVPMVREVNLSRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTR 269 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ +A L+MPG +++LNVS AAAV LY Sbjct: 270 ESCDEIAGLYMPGEMESLNVSVAAAVGLY 298 >gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] Length = 310 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKE 108 LYG+H+V AAL NP R+I T+NA ARL DA P +D + G Sbjct: 72 LYGLHSVEAALANPKRRIRHAWLTENAAARLAPLLDA---RKIAATLALPADLDALTGPG 128 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 AVHQG L+ PL P LD ++ +++LD V DPHN+GA+LRSA AF +I Sbjct: 129 AVHQGAVLQVEPLAQPGLDDFLDALGDAPATVVILDQVTDPHNVGAVLRSAAAFGIGALI 188 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R+SP +A LAKSASG LEH+P I + NL L+K+ F IG S+ + + Sbjct: 189 VQDRHSPPLTAALAKSASGGLEHVPVIEVVNLARVLEKLKERDFLCIGFDSEGAQRFDAA 248 Query: 224 IKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++A + GAE KGLR +E ++A L PG IK+LN+SNAAA+ + Sbjct: 249 LAGGRRVAFVFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVFH 300 >gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 280 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 147/249 (59%), Gaps = 8/249 (3%) Query: 32 KMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANL 87 ++ S + S P +L+G H V+AALNNP R +LL T+ AL Sbjct: 14 RVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENHPALEEATRSGRG 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LD-AVRNSQLLMVLDHVNDPH 145 P + V Q +D ++G +AVHQG+AL A +L P LD A+ ++VLD V DP Sbjct: 74 VRVAP-ELVQRQRLDDLLGPDAVHQGVAL-LARVLPPMPLDEALERPGPVLVLDQVTDPR 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGAILRSA AF ++ R +P E+AVLAK+ASGALE +P +R NL+ A++++ Sbjct: 132 NIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNLSRAIEQLQKS 191 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G T+GL + ++AL+LGAEGKGLR T+E+ +A L+MPG +++LNV Sbjct: 192 GCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNV 251 Query: 266 SNAAAVALY 274 S AAAV LY Sbjct: 252 SVAAAVGLY 260 >gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] Length = 258 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 7/239 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++L+G+H V AL NP+R+ +L+ T NA +L+ +A + V P+ + Sbjct: 20 QTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIAKAGIEPEVVDPRKFRPPLD 78 Query: 107 KEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +VHQG LE PL TL V + +++LD V DPHN+GAILRSA ++ Sbjct: 79 PGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVV 138 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ +GL ++ +E Sbjct: 139 GMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLDGEADMTVESA 198 Query: 223 -EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E K D+ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA+ALY +++H Sbjct: 199 LEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDH 257 >gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] Length = 282 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 6/226 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V AAL NP R I LAT+ A A + + P + V + +D++ ++A Sbjct: 56 WIYGHHAVQAALANPERVIHDFLATREAAASFENASRKP-----QIVDRERLDRLCERDA 110 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VHQG+ L PL + + D V ++VLD V DP NIGAILRSA AF ++ R Sbjct: 111 VHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQDRN 170 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +P ES +AK+ASGAL+ +P +R NL+ ALQ + + F +GL + + + + Sbjct: 171 APQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAGRR 230 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEG GLR T+ET +A ++MPG +++LNVSNAAAVALY Sbjct: 231 VALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALY 276 >gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] Length = 266 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 142/248 (57%), Gaps = 13/248 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + ++L+G+H V AL NP R++ +L+ TKNA RL DA + Sbjct: 13 ERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQSGITPEICE 71 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 P+ + +VHQG ALE PL S +DA + +LL LD V DPHN+GAILR Sbjct: 72 PRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLF-LDRVTDPHNVGAILR 130 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA +I TKR + E+ LAK+ASGALE PY+RI NL D +++M + G+ +GL Sbjct: 131 SAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKALGYILLGL 190 Query: 213 SSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +++ +E I + IAL+LGAEG GLR KT+ T ++ + G +LNVS Sbjct: 191 DGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAGAFGSLNVS 250 Query: 267 NAAAVALY 274 NAAAV+LY Sbjct: 251 NAAAVSLY 258 >gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 247 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 21/249 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 RR HR Q+ + + R +G H V+AAL NP+R + ++ T+ ALA LD Sbjct: 3 RRGHR---PSQASSNRPR---------FWGRHAVTAALANPNRTVRKIWGTREALAALD- 49 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVL 138 LP P+ + ++V +A HQGL E PL L L ++ Q L+VL Sbjct: 50 ---LPPVVPITYADAADLGRLVPADAPHQGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVL 106 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN+GAILRSA AF GI+T R++P ES +A+SASGALE +P+IR+ NL A Sbjct: 107 DQVTDPHNVGAILRSAAAFDALGIVTQDRHAPPESGTVARSASGALETVPWIRVVNLARA 166 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+++ GF IGL+ + + L Q + +I ++LGAEG+G+R T+ +A L + Sbjct: 167 LEEIAEAGFWRIGLTGHANQTLAQAMGTQRICIVLGAEGEGMRQNTEAHCDELAKLPISP 226 Query: 259 IIKALNVSN 267 +++LNVSN Sbjct: 227 KVESLNVSN 235 >gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] Length = 275 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 144/240 (60%), Gaps = 10/240 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++L+G+H V AL NP+R +L+ T+NA RL +A + P+ + Sbjct: 37 TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLG-EAIAVGGLEPEIADPRRFTAPLDP 95 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++VHQG ALE PL L+ V S +++LD V+DPHN+GAILRSA F Sbjct: 96 QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R+S E+ LAK+ASGALE PY+R++NL A++ + G+ +GL+ ++++ +E Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215 Query: 222 QEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY ++ Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275 >gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] Length = 265 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNAL +L+ DA + V Sbjct: 15 ERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKLE-DAVAACGMAPEVVE 73 Query: 98 PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 P+ D + + +VHQG AL+ PL L+ + + L+++LD V DPHN+GA+LRS Sbjct: 74 PRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLRS 133 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I R+S E+ LAK+ASGALE PY+R+ NL DA+Q++ + G+ +GL Sbjct: 134 AEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGLD 193 Query: 214 SDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ L Q E I L+LGAEG GLR +T+ET + + G +LNVSN Sbjct: 194 GEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250 >gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1] gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii RW1] Length = 247 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 141/237 (59%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 +K SQP +G H V AAL NP R + +L T+ A++ L+ LP PV Sbjct: 2 RKGHRPSQPAQGRPRFWGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150 + ++V +A HQGL +E PL L L+A + + L+VLD V DPHN+GA+ Sbjct: 58 ADAADLGRLVPHDAPHQGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAV 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF GI+T R++P ES LA+SASGALE +P++R+ NL AL ++ GF I Sbjct: 118 LRSAAAFDAVGIVTQDRHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GLS ++ L Q + + +IA++LGAEG+G+R T+ +A L + +++LN+SN Sbjct: 178 GLSGHARGTLAQVMGDSRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234 >gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] Length = 304 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 5/222 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108 L+G H V AAL NP+R +L T+ A+ + D +A LP PV+ + ++V ++ Sbjct: 49 LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108 Query: 109 AVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQGL L+ +PL LD V + + L++LD V DPHN+GAILR+ AF +IT Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R++P ES LAK+ASGALE +P++R+ NL+ AL+ + G+ I L + K + Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270 >gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] Length = 260 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 9/249 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++S+ + E ++L+G+H V AL NP R +L+ TKNA +L D P + Sbjct: 11 ERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIGASGMEP-EMSD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE L L+ V + +++LD V DPHN+GA+LR Sbjct: 70 PRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVLR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F ++ R++ E+ LAK+ASGALE PY+R+ NL DA++ + G+ +GL Sbjct: 130 SAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLGL 189 Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +++ + E K D+ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAA Sbjct: 190 DGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNAA 249 Query: 270 AVALYITQN 278 AVALY ++ Sbjct: 250 AVALYASRE 258 >gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 262 Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 143/237 (60%), Gaps = 5/237 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 +MQ R T P ++ L+G H V AAL NP+R +L AT+ +A LD LP F Sbjct: 16 RMQGGRGSGRAT--PGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLD--GELPPDF 71 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++V ++A HQGL LE L +D V + +++LD V DPHN+GAI Sbjct: 72 PVEYADVTDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES V+AKSASGALE +P++R+ NL AL + G+ I Sbjct: 132 LRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRI 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL+ +++ L + + +AL+LGAEG+G+R + ++A L + I++LNVSN Sbjct: 192 GLTGNTEATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248 >gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] Length = 262 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 146/237 (61%), Gaps = 7/237 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +N++L+G+H V AL NP+R+ +L+ T NA +L+ DA + V P+ + + Sbjct: 24 DNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKLE-DAIAAAGITPEVVDPRRFNAPLD 82 Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +VHQG ALE PL +L + +++ +++LD V DPHN+GAILRSA +I Sbjct: 83 PNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 142 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + GF +GL +++ +E Sbjct: 143 GTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFVVLGLDGEAEDTIESC 202 Query: 224 IKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ K +AL+LGAEG GLR KT+ET + + G +LNVSNAAA+ALY ++ Sbjct: 203 LQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASGGFGSLNVSNAAAIALYASK 259 >gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] Length = 258 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 147/248 (59%), Gaps = 7/248 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ +A + V Sbjct: 11 EQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIARAGIEPEVVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + +VHQG LE PL L V + +++LD V DPHN+GAILRSA Sbjct: 70 PRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVGAILRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 ++ + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ +GL Sbjct: 130 EVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLDG 189 Query: 215 DSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ +E + K D+ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA+ Sbjct: 190 EADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAI 249 Query: 272 ALYITQNH 279 ALY +++H Sbjct: 250 ALYASRDH 257 >gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi DSS-3] Length = 257 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 145/254 (57%), Gaps = 19/254 (7%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ S E ++L+G+H V AL NP R+ +L+ T NA +L + Sbjct: 11 EQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKL------AEAIDAAGIE 64 Query: 98 PQTIDKI-----VGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P+ D + +VHQG ALE PL L+ N ++++ LD V DPHN+G Sbjct: 65 PELADARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVIL-LDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ G+ Sbjct: 124 AILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYL 183 Query: 209 TIGLSSDSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ + +E + + D+ +AL+LGAEG GLR KT+ET + + G +LNV Sbjct: 184 VLGLDGEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNV 243 Query: 266 SNAAAVALYITQNH 279 SNAAA+ALY ++ H Sbjct: 244 SNAAAIALYASKAH 257 >gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 261 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL DA + V Sbjct: 14 ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIVD 72 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L+ + S LL++LD V DPHN+GA+LRS Sbjct: 73 PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + ++ +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 193 GEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249 >gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] Length = 263 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 145/244 (59%), Gaps = 9/244 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ E ++L+G+H V AL NP R+ +L+ T NA +L+ +A + V Sbjct: 16 EQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKLE-EAIAASGVEPELVE 74 Query: 98 PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL LS ++++ LD V DPHN+GAILRS Sbjct: 75 PRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVIL-LDRVTDPHNVGAILRS 133 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + G+ +GL Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E ++ + +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253 Query: 271 VALY 274 +ALY Sbjct: 254 IALY 257 >gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] Length = 259 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 143/239 (59%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L+L+G+H V AL NP R +L+ TKNAL RL DA + P+ + Sbjct: 21 TLWLFGLHAVRDALENPRRDKRRLVVTKNALDRLG-DAVGQAGLEPEISDPRKFAAPLDP 79 Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +VHQG ALE PL +L V S L +++LD V+DPHN+GAILRSA F + Sbjct: 80 GSVHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAV 139 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KP 219 I +R+S E+ LAK+ASGALE PY+R++NL A++++ G+ GL+ +++ +P Sbjct: 140 IGVQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRP 199 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY +++ Sbjct: 200 ALDGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASRS 258 >gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica subsp. indica ATCC 9039] Length = 293 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 137/243 (56%), Gaps = 2/243 (0%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 Q N S P+ + L+G H V AL + R L AT+ A +L D+ P Sbjct: 48 QEKNPSPFRQSSPDVILLHGFHAVREALRSDQRTCLALYATEAAAEKLAPDSKAAGLAP- 106 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILR 152 V + + + +G + VHQG+ LE PL + + S +++VLD + DPHN+GAI+R Sbjct: 107 HIVTAEDLSRRLGSQTVHQGVLLEARPLEPLDITEIPTRSGVVLVLDQITDPHNVGAIVR 166 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A AF D I+TT+R++P+ VLAK+ASG LEH+ + + NL AL+ + + +GL Sbjct: 167 TAAAFDVDAIVTTERHAPALGGVLAKAASGGLEHVQIVPVVNLARALETLGRLNYLRVGL 226 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S ++ Q IAL+LG EG GLR T+E +A L MPG IK+LNVSNA AV Sbjct: 227 DSAAEADFTQLPLQRPIALVLGGEGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVV 286 Query: 273 LYI 275 L + Sbjct: 287 LTL 289 >gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] Length = 264 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/261 (38%), Positives = 150/261 (57%), Gaps = 13/261 (4%) Query: 28 RDYKKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 R KK +K R S + ++L+G+H V AL NP R+ +L+ TKNA +L + Sbjct: 4 RSKKKPLWIVEKERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLS-SS 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLD 139 + + + P+ + + ++VHQG ALE PL +S T+ A RN + L++LD Sbjct: 63 IITSGIDAEIIDPRKFNPPIDPQSVHQGAALEVMPLDWGNMS-TVCAPRNDKKARLVILD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DPHN+GAILRSA F +I T R S E+ LAK+ASGALE PY+R+ NL ++ Sbjct: 122 RVTDPHNVGAILRSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSI 181 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ--EI-KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + G+ +GL +K ++ E+ +N +A++LGAEG GLR T++T + + Sbjct: 182 KSLQEMGYYVVGLDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDY 241 Query: 257 PGIIKALNVSNAAAVALYITQ 277 +LNVSNA AVALY T+ Sbjct: 242 AATFGSLNVSNATAVALYATK 262 >gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] Length = 274 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 8/247 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ S E ++L+G H V AL NP R +L+ T NA +L DA + Sbjct: 28 EQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLG-DAVAEAGMEPEISD 86 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRS 153 P+ + ++VHQG ALE PL L+ V + L++LD V DPHN+GAILRS Sbjct: 87 PRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILRS 146 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I T+ ++ E+ LAK+ASGALE PY+R NL D + + G+ +GL Sbjct: 147 AEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGLD 206 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +++ +E ++ + IAL+LGAEG GLRPKT+ET ++ + +LNVSNAAA Sbjct: 207 GEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAAA 266 Query: 271 VALYITQ 277 VALY + Sbjct: 267 VALYAVR 273 >gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654] Length = 267 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 141/254 (55%), Gaps = 27/254 (10%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---------DWDANLP 88 +KS+ + E ++L+G+H V AL NP R +L+ TKNA +L + + P Sbjct: 12 EKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLADAIATGGIEPEVADP 71 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVND 143 FPV P +VHQG ALE PL L+ V ++++LD V D Sbjct: 72 RKFPVPLDP----------GSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAILRSA F +I TK +S E+ LAK+ASGALE PY+R++NL DA+ + Sbjct: 122 PHNVGAILRSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLK 181 Query: 204 SWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G+ +GL+ ++ + + +AL++GAEG GLR KT+ET ++ + Sbjct: 182 DMGYTVLGLAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEF 241 Query: 261 KALNVSNAAAVALY 274 +LNVSNAAAV+LY Sbjct: 242 GSLNVSNAAAVSLY 255 >gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] Length = 264 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 147/248 (59%), Gaps = 7/248 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ P + V Sbjct: 17 EQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQAGITP-EVVD 75 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 P+ + + +VHQG LE PL +L V + +++LD V DPHN+GAILRSA Sbjct: 76 PRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVGAILRSA 135 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I + ++ E+ LAKSASGALE PY+R+ NL D+++++ + G+ +GL Sbjct: 136 EVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYLVLGLDG 195 Query: 215 DSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +++ +E E K D+ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA+ Sbjct: 196 EAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAAI 255 Query: 272 ALYITQNH 279 ALY ++ H Sbjct: 256 ALYASRPH 263 >gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 14 ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L+ + S LL++LD V DPHN+GA+LRS Sbjct: 73 PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + ++ +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 193 GEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] Length = 261 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 14 ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L+ + S LL++LD V DPHN+GA+LRS Sbjct: 73 PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + ++ +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 193 GEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1] gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1] Length = 260 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 9/245 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + + E ++L+G+H V AL NP R++ +L+ + NA +L DA + Sbjct: 12 ERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIAD 70 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILR 152 P+ + +VHQG A+E PL A+ ++++LD V+DPHN+GAILR Sbjct: 71 PRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAILR 130 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE +PY RI NL DA++ + + GF +GL Sbjct: 131 SAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVGL 190 Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + P++ + IAL+LGAEG GLR +T+ +A + +LNVSNAA Sbjct: 191 AEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNAA 250 Query: 270 AVALY 274 AVALY Sbjct: 251 AVALY 255 >gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 14 ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L+ + S LL++LD V DPHN+GA+LRS Sbjct: 73 PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + ++ +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 193 GEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] Length = 293 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 2/219 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG H V AL RK+F + AT+ A +L + + V + + + +G A Sbjct: 61 VLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPEIAAAG-LTARLVAAEDLSRRLGPAA 119 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VHQG+ LE P + + D S +++VLD + DPHN+GAI R+A AF D ++ T+R+ Sbjct: 120 VHQGVMLEARPFEALDISDIAPESGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTERH 179 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +P + VLAK+ASG LEH+P I + NL AL+ + G+ +GL S+ + L + Sbjct: 180 APELTGVLAKAASGGLEHVPIIHVVNLARALRALKDQGYLRVGLDSEGESTLTDAPLSRP 239 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +ALILG EGKGLR T+E +A L MPG IK+LNVSN Sbjct: 240 LALILGGEGKGLRRLTRENCDLVARLDMPGPIKSLNVSN 278 >gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503] gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503] Length = 243 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 132/231 (57%), Gaps = 6/231 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E L+LYG HTV AAL NP R +LLAT+NAL W + V P+ IDK + Sbjct: 10 EPLWLYGRHTVEAALGNPQRHQVKLLATRNALG---WLKERGRTITIDPVTPKDIDKALP 66 Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 AVHQGLA+ PL SP+L + + N + L+VLD + DP NIGA+ R A AFS +I Sbjct: 67 PGAVHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFSAKAVI 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R +P LAK+A+GA+E +P+I + N++ AL+ + GL+ + L Sbjct: 127 AQDRRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGEGALSLRDT 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LGAEGKGLRP + + + + I++LNV+ AAA++LY Sbjct: 187 APTRTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLY 237 >gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 263 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 135/235 (57%), Gaps = 5/235 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ--TIDKIV 105 +LYG H V AAL NP+RK+ QLL T A L + L FP++ V + +D + Sbjct: 30 TCWLYGQHAVQAALENPARKLRQLLVTAEAQETLA--SRLEGGFPIQPVRTERAALDTLC 87 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G +AVHQG+AL L P LD V ++VLD V DP NIGAILRSA AF ++ Sbjct: 88 GPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVVM 147 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R +P E+ LA++ASGALE +P IR+ NL+ L + S G +GL + Sbjct: 148 QDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDALKSRGLWVVGLDAGGGVLDGAAF 207 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL+LGAEG GLR T+E +A L M +++LNVSNAAAVALY H Sbjct: 208 HQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYEMFRH 262 >gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 246 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ T + + F YG H V AAL NP R + ++ T+ AL LD LP P+ Sbjct: 2 KRGNRTGKAKGTFPRFYGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150 + ++V +A HQG+ E PL L L+A ++ + ++VLD V DPHN+GAI Sbjct: 58 ADGADLGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ I Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++++ L + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] Length = 265 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 11/239 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ R + E ++L+G+H V AL NP+R+ +L+ TKNA +L DA + Sbjct: 13 ERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAAGGIEPEMAD 71 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL ++ D VR ++++ LD V DPHN+GAIL Sbjct: 72 PRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVRPPRVVL-LDRVTDPHNVGAIL 130 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + ++ E+ LAK+ASGALE PY+R+ NL D + ++ S G+ +G Sbjct: 131 RSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQSMGYLVLG 190 Query: 212 LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L ++ LE + +++ +AL+LGAEG GLRPKT++T + + G +LNVSN Sbjct: 191 LDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVSN 249 >gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] Length = 258 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 143/238 (60%), Gaps = 9/238 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ + E ++L+G+H V AL NP+R+ +L+ T+NAL RL DA + Sbjct: 11 EQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEISD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL---LMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL +L A+R + +++LD V DPHN+GAILR Sbjct: 70 PRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAILR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F ++ +R++ E+ LAK+ASGALE PY+R+ NL D++ ++ G+ +GL Sbjct: 130 SAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLGL 189 Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ +E+ E K D+ +AL++GAEG GLR KT+ET + + +LNVSN Sbjct: 190 DGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247 >gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 249 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 +K+ +++P+ F YG H V+AAL NP+R + ++ T+ AL LD LP P+ Sbjct: 2 KKTHRSAKPKGAFPRFYGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLPIVY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150 + ++V +A HQG+ E PL L V + + ++VLD V DPHN+GAI Sbjct: 58 SDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNVGAI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES VLA++ASGALE +P++R+ NL AL ++ G+ I Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGYWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++ + + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 178 GLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234 >gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] Length = 246 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ T + + F YG H V AAL NP R + ++ T++AL LD LP P+ Sbjct: 2 KRGNRTGKAKGQFPRFYGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150 + ++V +A HQG+ E PL L L+A ++ + ++VLD V DPHN+GAI Sbjct: 58 SDVADLGRMVPSDAPHQGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ I Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++++ L + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter diazotrophicus PAl 5] Length = 321 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 1/226 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +LYG+H AAL NP R+I Q+LAT++ A L N P P ++ + G++A Sbjct: 88 WLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDA 147 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VHQG+A+ L S + D L++LD V DP N+GAILRSA AF ++ +R Sbjct: 148 VHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERN 207 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +P E+ LAK+ASGALE +P +R+ NL L + S F +GL + + Sbjct: 208 APDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRR 267 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY Sbjct: 268 VALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALY 313 >gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025] gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +++R T+ E ++L+G+H V AL NPSR+ +L+ TKNA RL +A + V Sbjct: 14 ERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLG-EAVAAGGIEPEIVD 72 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L+ + S L+++LD V DPHN+GA+LRS Sbjct: 73 PRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F ++ R+S E+ LAK+ASGALE PY+R+ NL + ++++ + G+ +GL Sbjct: 133 AEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGLD 192 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S++ L + + + L+LGAEG GLR KT++T + + G +LNVSN Sbjct: 193 SEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249 >gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] Length = 272 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 145/252 (57%), Gaps = 19/252 (7%) Query: 30 YKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K + Q SRH + + + +G H V AAL NP R + ++ T+ AL +LD Sbjct: 12 HGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLD- 70 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLL 135 LP P+ + ++V ++A HQGL +E PL L +DA + + L Sbjct: 71 ---LPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDA-ESRRPL 126 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DPHNIGA+LRSA AF I+T R+SP ES V+A+SASGALE +P++R+ NL Sbjct: 127 VILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNL 186 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + AL+++ + IGL D++ L + + K+AL+LG+EG G+R E +A L Sbjct: 187 SRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLP 246 Query: 256 MPGIIKALNVSN 267 + +++LN+SN Sbjct: 247 ISPRMESLNISN 258 >gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 263 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 138/242 (57%), Gaps = 10/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++L+G+H V AL NP+R +L+ T+NA +L P + P+ + Sbjct: 22 QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80 Query: 107 KEAVHQGLALETAPL-LSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCD 160 +VHQG ALE PL P + V L+++LD V DPHN+GAILRSA F Sbjct: 81 PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I+T R + E+ LAK+ASGALE PY+R+ NL + ++++ + GF +GL ++ + Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200 Query: 221 E---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++ + IAL+LGAEG GLR KT+ET + + +LNVSNAAAVALY + Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260 Query: 278 NH 279 Sbjct: 261 GE 262 >gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus denitrificans PD1222] Length = 265 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 133/230 (57%), Gaps = 12/230 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E ++L+G+H V AL NP R+ +L+ T+NAL RL LP + V +T D+ V Sbjct: 27 ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRL---GPLPPDLAHEIVDARTFDRAVP 83 Query: 107 --KEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCD 160 E+VHQG ALE PL +L + S LL+ LD V DPHN+GAILRSA F Sbjct: 84 LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I R+S E+ LAK+ASGALE PY+R++NL D L ++ S G+ +GL + L Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203 Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +++ I L+LGAEG GLR +T+ET + + +LNVSN Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253 >gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] Length = 258 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 141/238 (59%), Gaps = 9/238 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ S E ++L+G+H V AL NPSR+ +L+ TKNA +L+ P + V Sbjct: 11 EQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEAAIAASGITP-EEVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-LSP----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL P L R + +++LD V DPHN+GAILR Sbjct: 70 PRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAILR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +GL Sbjct: 130 SAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLGL 189 Query: 213 SSDSKKPLE--QEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +++ +E E + D+ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 190 AGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040] gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040] Length = 262 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 139/234 (59%), Gaps = 7/234 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E ++L+G+H V AL NP R+ +L+ T NA +L+ DA + V P+ + Sbjct: 25 ETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKLE-DAIATSGITPEVVDPRKFSVPID 83 Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +VHQG ALE PL L D +++ +++LD V DPHN+GAILRSA +I Sbjct: 84 PGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 143 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ Sbjct: 144 GTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEA 203 Query: 224 IKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY Sbjct: 204 VAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257 >gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] Length = 258 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 141/238 (59%), Gaps = 9/238 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNA +L+ P + V Sbjct: 11 EQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEAAIAASGITP-EEVD 69 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL P + R + +++LD V DPHN+GAILR Sbjct: 70 PRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAILR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +GL Sbjct: 130 SAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLGL 189 Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +++ +E E K D+ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 190 AGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] Length = 262 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 7/232 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++L+G+H V AL NP R+ +L+ T NA +L+ DA + V P+ + Sbjct: 27 VWLFGLHAVRDALLNPKREKLRLVVTLNAHNKLE-DAITTSGITPEVVDPRKFSVPIDPG 85 Query: 109 AVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 +VHQG ALE PL LD +++ +++LD V DPHN+GAILRSA +I T Sbjct: 86 SVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIGT 145 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ + Sbjct: 146 RHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAVA 205 Query: 226 N---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY Sbjct: 206 GRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257 >gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] Length = 233 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG+H AAL NP R+I Q+LAT++ A L N P P ++ + G++AV Sbjct: 1 MYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAV 60 Query: 111 HQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+A+ L S + D L++LD V DP N+GAILRSA AF ++ +R + Sbjct: 61 HQGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNA 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P E+ LAK+ASGALE +P + NL L + S F +GL + ++ Sbjct: 121 PDETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRV 180 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY Sbjct: 181 ALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALY 225 >gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] Length = 348 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 131/233 (56%), Gaps = 14/233 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP---QTIDKI 104 L+L+G H V AAL NP RK +LLA A P TV P + I+ + Sbjct: 115 GLWLFGRHAVEAALQNPERKALRLLALAGAAEG--------LPKGGPTVEPADREAIEAV 166 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 V AVHQGLAL+ APL PT++ + ++ +LD V+DPHNIGA+LRSA AF Sbjct: 167 VPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRA 226 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R+SP E+ LAKSASG LE +P +R NL+ AL GF GL + ++ L Sbjct: 227 VVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLA 286 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ ++LG+EG GLR ++ + L M +++LNVSNAAAV Y Sbjct: 287 EAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFY 339 >gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] Length = 304 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 147/228 (64%), Gaps = 4/228 (1%) Query: 50 FLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 FL+G H V AAL NP+RK + +LLAT++ A ++ + + ++ + QT+++++ Sbjct: 71 FLWGRHPVLAALANPARKGMGRLLATEDRAAEIEREGTA-NGHKIEVMDAQTLERMLPAG 129 Query: 109 AVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 AVHQG+A + PL +L+ + + ++++LD + DP N+GAI RSA+AF GI+ Sbjct: 130 AVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLTDPQNVGAIFRSALAFGARGIVVQD 189 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R+SP + LAK+A+GA E +P R++NL+ AL+++ G++ +GL DS++ LE + + Sbjct: 190 RHSPVLAGALAKAAAGATERLPCARVTNLSRALERLADLGWRAVGLDGDSEELLENALDH 249 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G+EG G+R E +A + MPG ++LNVSNAAAVALY Sbjct: 250 RPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAAAVALY 297 >gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 258 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 11/238 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDK 103 +N +LYG HT AL N +R +LL T+N+ + + V+ V + + + Sbjct: 8 KNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILSE 67 Query: 104 IVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ++ K A HQG+AL+ AP+L ++ +S +++LD V D HNIG+ILR++ F+ Sbjct: 68 VLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACFN 127 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ +SPSE+A +AK+ASG L+ +P I ++N+ ++ + G+ G S++K+ Sbjct: 128 VDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAKE 187 Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ EIK+ KI +I G+EGKG+R +E + + M +I +LNVSNAAA+ LY Sbjct: 188 NID-EIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244 >gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] Length = 278 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 9/238 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++S+ E ++L+G+H V AL NP R+ +L+ T NA A+L+ DA + Sbjct: 31 EQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKLE-DAIAAGGIEPEIHD 89 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL L+ V L++LD V DPHN+GAILR Sbjct: 90 PRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAILR 149 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I T+ ++ E+ LAK+ASGALE PY+R NL D ++ + G+ +GL Sbjct: 150 SAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLGL 209 Query: 213 SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ +E + +++ +AL+LGAEG GLR KT+ET + + +LNVSN Sbjct: 210 DGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267 >gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003] gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus SB 1003] Length = 264 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 133/229 (58%), Gaps = 10/229 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105 L+L+G+H V AL NP+R +L+ TKNA +L +A + V P+ D V Sbjct: 21 TLWLFGLHAVRDALMNPARVKLRLVLTKNAADKLA-EAIAAGGLAPEIVDPRKFDAHVPL 79 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G + VHQG ALE PL L V + L+++LD V DPHN+GAILRSA F Sbjct: 80 GPDQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARA 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R+S E+ LAK+ASGALE PY+R++NL++A+ + G+ IGL+ +++ L Sbjct: 140 VVAPARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLA 199 Query: 222 Q---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + E+ +A++LGAEG GLR KT+ T + + G +LNVSN Sbjct: 200 EGLAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248 >gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex] Length = 250 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 138/231 (59%), Gaps = 7/231 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGK 107 +L+G H+V AAL N R+ QLL T++AL ++ + A P P K +P +++++ Sbjct: 18 FWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSP-KILPRDELNRLL-P 75 Query: 108 EAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + VHQG+AL+ +PL L+ L ++ L++LD + DP N+GAILRSA AF DG++ Sbjct: 76 QTVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVL 135 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+R+SP V+ KSASGALE IP + +N+ L+ + + GF GLS + PL Q Sbjct: 136 MTERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQL 195 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEGKGLRP T + + L LNV+ AAAVA Y Sbjct: 196 PCEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLNVAAAAAVAFY 246 >gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] Length = 248 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 141/246 (57%), Gaps = 8/246 (3%) Query: 33 MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 M FN+ +++ + + ++YG H V +A+NNP R+I +L T+ D + L Sbjct: 1 MMVFNKMQNKQLNYQNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTR 57 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIG 148 P + V I K++ K HQG+A + P+ S LD + N Q +++LD + D NIG Sbjct: 58 PYEIVNNYIISKLL-KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIG 116 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + GF Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG++ + + + +DKIAL+ GAE KG+R +ET +A + + +++LNV+NA Sbjct: 177 IIGVTGYANEYFTDKFISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236 Query: 269 AAVALY 274 A++ + Sbjct: 237 ASIIFH 242 >gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 254 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 139/239 (58%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTID 102 EN +LYG HT +AL N +R+ +LL T+N + + AN V+ V + ++ Sbjct: 8 ENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYAN-SKGIKVRLVENKILN 66 Query: 103 KIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR++ F Sbjct: 67 DVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILRTSACF 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ +SPSE+A +AK+ASGAL+ IP I ++N+ +Q + G+ G ++K Sbjct: 127 NVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGFDCNAK 186 Query: 218 KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ EIK+ K +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 187 ENID-EIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 244 >gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] Length = 289 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 140/260 (53%), Gaps = 14/260 (5%) Query: 29 DYKKMQSFNQKSRHT--SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDA 85 D + +SF+ +R T + + +YG H V AAL+N R + + T A A + + Sbjct: 13 DRQTERSFDGSTRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGAGDAMAVFLS 72 Query: 86 NLPHPFPVKTVPPQTIDKI-----VGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134 LP P PQ +D + AVHQGL L+ PL P L + R + Sbjct: 73 ELPEPRRRSLPAPQPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLIVAWEGRTDIV 132 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD V DPHN+GA+LRSA AF ++ R+ P + VLAK ASGAL+ +P +R+ N Sbjct: 133 LVVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVVN 192 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L AL+ + GF GL+ D L + + A++LGAEG GLR T+ET ++A L Sbjct: 193 LARALRDLQENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLTRETCDALARL 252 Query: 255 HMPGIIKALNVSNAAAVALY 274 I +LNVS AAAVALY Sbjct: 253 PTCPPIGSLNVSAAAAVALY 272 >gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] Length = 254 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 139/241 (57%), Gaps = 17/241 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQT 100 EN +LYG HT +AL N +R+ +LLAT+N R D+ V+ V + Sbjct: 8 ENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVESKI 64 Query: 101 IDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR++ Sbjct: 65 LNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSA 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G + Sbjct: 125 CFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCN 184 Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K+ ++ EIK+ K +I G+E KG+R +E + + M I +LNVSNAAA+ L Sbjct: 185 TKENID-EIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGL 243 Query: 274 Y 274 Y Sbjct: 244 Y 244 >gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 254 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 139/239 (58%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTID 102 EN +LYG HT +AL N +R+ +LL T+N + + AN V+ V + ++ Sbjct: 8 ENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYAN-SKGIKVRLVENKILN 66 Query: 103 KIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR++ F Sbjct: 67 DVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILRTSACF 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K Sbjct: 127 NVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNAK 186 Query: 218 KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ EIK+ K +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 187 ENID-EIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 244 >gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 241 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 137/235 (58%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGK 107 ++YG H V +ALNNP R+I +L T ++ +DAN L P K V + K++ Sbjct: 13 YIYGKHPVFSALNNPKRQIEDILCT-----QMIFDANKKLISSKPYKIVNNDVLSKLLEN 67 Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+A + P+ S ++ + +N + + +LD + DP NIGAI+RSA AF+ D II Sbjct: 68 QT-HQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAAAFNIDAIIL 126 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 SP+E+ +AK+A G LE I I+++NL + + GF IGL+ ++ ++ Sbjct: 127 PLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGEANDYFTDKL 186 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +DKIALI G+E KG+R QE +A + + +++LNVSNAA++ + +H Sbjct: 187 ISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHSLWDH 241 >gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Puniceispirillum marinum IMCC1322] Length = 312 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 133/235 (56%), Gaps = 22/235 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WD-------ANLPHPFPVKTVPPQT 100 FL+G H V+AAL NP R+I L T ++ D W A LP P++ + Sbjct: 70 FLWGRHAVAAALVNPDRRIAALYVTDDSRDSFDEMWQTLAMDRQAELPDARPIER---RR 126 Query: 101 IDKIVGKEA---VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D I G ++ VHQG+A PL +P LD A + +++M LD ++DP N+GAIL Sbjct: 127 LDGIGGHDSEKVVHQGMAAAVWPLDAPHLDDFIADIADKPVRIIM-LDQISDPRNVGAIL 185 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF CD IITT+R++P E+ LA++A+GALEHIP IR+ NL A++ + G Sbjct: 186 RSARAFGCDAIITTQRHAPEENGALARTATGALEHIPIIRVVNLARAVESLQDHDITVAG 245 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ D + ++A++LGAEG GLR ++E + + + +LNVS Sbjct: 246 LAGDGTMDVGALADFPRLAIMLGAEGPGLRRLSREHCDHLVRIDIAPDADSLNVS 300 >gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis HTCC2601] gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. HTCC2601] Length = 259 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 135/238 (56%), Gaps = 9/238 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++++ E ++L+G+H V AL NP R+ +L+ T NA A+L DA + Sbjct: 12 EQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLA-DAVAEAGIAPEIHD 70 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL LD V L++LD V+DPHN+GAILR Sbjct: 71 PRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAILR 130 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I + +S E+ LAK+ASGALE PY+R NL D ++ + + G+ +GL Sbjct: 131 SAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLGL 190 Query: 213 SSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ +EQ +++ +AL+LGAEG GLR KT+ T + + G +LNVSN Sbjct: 191 DGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248 >gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E] gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii] Length = 248 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 8/252 (3%) Query: 33 MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 M FN+ +++ + ++YG H V +A+NNP R+I +L TK D + L Sbjct: 1 MTVFNKMQNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTR 57 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 + V + K++ K HQG+A + P+ S LD + + +++LD + D NIG Sbjct: 58 SYEIVNNYILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIG 116 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + GF Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG++ +K+ ++ +DKIAL+ GAE KG+R +ET +A + + +++LNV+NA Sbjct: 177 IIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236 Query: 269 AAVALYITQNHF 280 A++ + +F Sbjct: 237 ASIIFHSLHKYF 248 >gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] Length = 243 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 12/239 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101 Q E + ++G H AA+ NP R I + + A L + LP+ + I Sbjct: 2 QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPN---ISFCENTQI 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157 KI G++A+HQG+A+ T L P L D ++N+ L+M+LD + DP N+G ILRS+ AF Sbjct: 59 AKICGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAF 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ + + Sbjct: 119 GVDAIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGAS 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +K+A +LG+EGKG+ KT+ T ++ ++NVSNAAA+A++ Sbjct: 179 SKLTEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237 >gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 255 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 140/240 (58%), Gaps = 15/240 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--- 103 EN ++YG HT +AL N +R+ +LL T+N +++ + K + P+ ++ Sbjct: 8 ENCWIYGKHTCISALRNKNRRCIELLVTENFYR--EFEKEIKQCADSKGIKPRLVENKMF 65 Query: 104 --IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ K HQG+AL+ AP+ + + +S +++LD + D HNIG+ILR++ Sbjct: 66 NDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILRTSAC 125 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ ++ + G+ G ++ Sbjct: 126 FNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGFDCNA 185 Query: 217 KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K+ ++ EIKN K +I G+E KG+R +E+ + + M +I +LNVSNAAA+ LY Sbjct: 186 KENID-EIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAIGLY 244 >gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5] Length = 179 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 16/166 (9%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + + P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPLPQKRKRGPEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L+NP RK +L T+NALARL+ D L F + V P IDK++G EA+HQG+ LET Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKVLGPEAIHQGVMLETL 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITT 179 >gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22] Length = 242 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 134/234 (57%), Gaps = 7/234 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V +A+NNP R+I +L TK D + L + V + K++ K Sbjct: 13 YMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL-KHQ 68 Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+A + P+ S LD + + +++LD + D NIGAI+RSA AF + II + Sbjct: 69 THQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAIILPQ 128 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 SP+ES +AK+A G LE IP I+++NL + + GF IG++ +K+ ++ + Sbjct: 129 DNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDKLIS 188 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + +F Sbjct: 189 DKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 242 >gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 136/239 (56%), Gaps = 12/239 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101 Q E + ++G H AA+ NP R I + + A L + LP+ + I Sbjct: 2 QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPN---ISFCENTQI 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAF 157 KI G++A+HQG+A+ T L P L V S L+++LD + DP NIG ILRS+ AF Sbjct: 59 AKICGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAF 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ L ++ Sbjct: 119 GVDALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGAR 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +K+A +LG+EGKG+ KT+ T ++ ++NVSNAAA+A++ Sbjct: 179 SKLTEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237 >gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 441 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 144/237 (60%), Gaps = 11/237 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT----IDKI 104 ++L+G+H V AAL NP+R++ +LL T+ A A L LP P+ + V +T +D++ Sbjct: 208 VWLHGLHAVEAALRNPARRLRRLLLTEEAEATLA--ERLPPPWAL--VAERTERAHMDQL 263 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +G E+VHQG+AL L SP L + + ++VLD V+DP N+GAILRSA AF + Sbjct: 264 LGTESVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCV 323 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I R +P ES +AK+ASGAL+ +P +R+ N+ L + + +GL ++ Sbjct: 324 IVQDRNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGP 383 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 + ++AL++GAEG GLR T+E+ + L M +++LNVS A A+ALY I++N Sbjct: 384 ALGKRRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440 >gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 244 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 139/248 (56%), Gaps = 12/248 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + KMQ+ S++ ++YG H V +ALNNP R+I +L T+ L D + L Sbjct: 3 FNKMQNKKLDSKNC-----YYMYGKHPVFSALNNPKRQIENILCTREIL---DTNKKLIG 54 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHN 146 + V + K++G + HQG+ + P+ S L+ ++N + + +LD + D N Sbjct: 55 TRSYEIVNNDILSKLLGNQT-HQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI+RSA AF + II K SP+ES +AK+A G LE I I+++NL + + G Sbjct: 114 IGAIIRSAAAFDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHG 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F IGL+ + ++ +DK+AL+ G+E KG+R +ET +A + + +++LNVS Sbjct: 174 FWIIGLTGSAHDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVS 233 Query: 267 NAAAVALY 274 NAA++ + Sbjct: 234 NAASIIFH 241 >gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 13 YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-ENQ 68 Query: 110 VHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +HQG+A + P+ S L+ ++N + + +LD + D NIGAI+RSA AF + II + Sbjct: 69 IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 128 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + ++ + Sbjct: 129 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 188 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 189 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236 >gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 265 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 144/256 (56%), Gaps = 9/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLD 82 R + R KK + + + P + +++G H V AAL NP R +LLAT +++ Sbjct: 7 RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIE 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVL 138 A ++ I + + + AVHQG+AL APL P D R +L++L Sbjct: 67 --ARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPL--PEADLADFEPRPGAVLLML 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GAILRSA AF G+I R++P + LAK+A+GA+E P + NL+ A Sbjct: 123 DQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRA 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L ++ G++T+GL+ ++ L + + + L+LG+EG+GLR E +A + MPG Sbjct: 183 LDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPG 242 Query: 259 IIKALNVSNAAAVALY 274 ++LNVSNAAA+ALY Sbjct: 243 GFESLNVSNAAAIALY 258 >gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 240 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 13 YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLLENQT 69 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+A + P+ S L+ V +N + + +LD + D NIGAI+RS+ AF D II + Sbjct: 70 -HQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSAAFDIDAIILPQ 128 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + ++ + Sbjct: 129 DNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 188 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 DK+AL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 189 DKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236 >gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis] gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis] Length = 229 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 2 YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-ENQ 57 Query: 110 VHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +HQG+A + P+ S L+ ++N + + +LD + D NIGAI+RSA AF + II + Sbjct: 58 IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 117 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + ++ + Sbjct: 118 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 177 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 178 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225 >gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] Length = 278 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 147/252 (58%), Gaps = 9/252 (3%) Query: 28 RDYK-KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDA 85 RD++ K + N SR ++ +++G H V AAL NP R +LLAT + RL Sbjct: 18 RDFRSKPRKQNDFSRGQGDAKD-WIWGTHAVEAALANPRRPAPKRLLATPDRAKRLA--P 74 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVN 142 +L ++ + Q I K + + AVHQGLAL E PL L L+M LD + Sbjct: 75 HLQKLTCLQVMEGQEIAKQLPQGAVHQGLALKIDEPEPLTIAELGTPAKGFLVM-LDQIT 133 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP NIGAI RSA AF G+I R++P+ S VLAK+A GA++ PY R+ NL+ AL+++ Sbjct: 134 DPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVDKAPYARVVNLSRALEEL 193 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G++ + L+ ++++ L+ + + L+LG+EG+G+R E ++ + MPG ++ Sbjct: 194 ADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVAEHCDALGKIPMPGGFES 253 Query: 263 LNVSNAAAVALY 274 LNVS AAA+ALY Sbjct: 254 LNVSAAAAIALY 265 >gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ] gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma phagocytophilum HZ] Length = 258 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 14/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 L++YG H +AL NP+R +LL T + + D L ++ V ID +VG Sbjct: 10 LWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIAKIDSLVG 69 Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQ-----LLMVLDHVNDPHNIGAILRSA 154 +A+HQG+ L+ PL D V ++ ++VLD V D HN+GA+LR+A Sbjct: 70 SKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNVGAVLRTA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F+ D ++ T+ SPSES +AK++SGA++ +P + I NL L+ + + G + Sbjct: 130 ACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDA 189 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +++ +ILGAEGKG+R T++ + + M +++LNVSNAAA+A+Y Sbjct: 190 SGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMY 249 >gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] Length = 276 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 147/251 (58%), Gaps = 7/251 (2%) Query: 28 RDYK-KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDA 85 RD++ K + N S+ ++ +++G H V AAL+NP R +LLAT + RL Sbjct: 18 RDFRSKPRKPNDFSKGQGDAKD-WIWGTHAVEAALSNPHRPAPKRLLATPDRAKRLA--P 74 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVND 143 L ++ + Q I K + + AVHQGLAL + LS A N L++LD + D Sbjct: 75 ALQKLSCLQVMEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELAASNDGFLVMLDQITD 134 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIGAI RSA AF G+I R++P S VLAK+A GA++ +PY R+ NL+ AL+++ Sbjct: 135 PQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVPYARVVNLSRALEELA 194 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G++ + L+ ++++ L++ + L+LG+EG+G+R E + + MPG ++L Sbjct: 195 DLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHCDVLGKIPMPGGFESL 254 Query: 264 NVSNAAAVALY 274 NVS AAA+ALY Sbjct: 255 NVSAAAAIALY 265 >gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31] gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31] Length = 278 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 145/251 (57%), Gaps = 7/251 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDAN 86 RD++ N K +++G H V AAL+NP+R +LLAT + RL N Sbjct: 18 RDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKRLLATADRAKRLA--PN 75 Query: 87 LPH-PFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQ-LLMVLDHVND 143 L PF + + I + + AVHQG+AL+ P D +Q LL++LD + D Sbjct: 76 LAKAPF-LTIMEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLGTPAQGLLVMLDQITD 134 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIGAI RSA AF G+I R++P+ + VLAK+A GA++ I Y R+ NL+ AL+++ Sbjct: 135 PQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIAYARVVNLSRALEELA 194 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G++ + L+ ++++ L+Q + L+LG+EG+G+R E +M + MPG ++L Sbjct: 195 DLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHCDAMGKIAMPGGFESL 254 Query: 264 NVSNAAAVALY 274 NVS AAAVALY Sbjct: 255 NVSAAAAVALY 265 >gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] Length = 272 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 145/257 (56%), Gaps = 8/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQ-PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 +++ D K NQK Q PE ++++GVH V++AL N SRK + T+N +L Sbjct: 7 KQSFADNTKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFFTRNGAQKL 66 Query: 82 DWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQL-LMVL 138 DA LPH + P+ IDK+V ++VHQG+ L L D + N + +++L Sbjct: 67 GLDAEHLPHY--AQLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLANGEGPIVIL 124 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GA+ RS AF +I R SP+ LAK+A GA++ IP + + N++ A Sbjct: 125 DQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEVAVVNISRA 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMP 257 + + G+ +G+ +++ + Q +A+++GAEG G+RP + + +A + + Sbjct: 185 VTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCSQLAKISIS 244 Query: 258 GIIKALNVSNAAAVALY 274 +++LNVS+AA++ALY Sbjct: 245 PQMESLNVSSAASIALY 261 >gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 257 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 139/244 (56%), Gaps = 20/244 (8%) Query: 47 ENLFLYGV---HTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVP 97 EN +LY HT +AL N +R+ +LLAT+N R D+ V+ V Sbjct: 8 ENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVE 64 Query: 98 PQTIDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ +V K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 65 NKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGSILR 124 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ + ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G Sbjct: 125 TSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 184 Query: 213 SSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++K+ ++ EIK+ K +I G+E KG+R +E + + + +I +LNVSNAAA Sbjct: 185 DCNAKENID-EIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNAAA 243 Query: 271 VALY 274 + LY Sbjct: 244 IGLY 247 >gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 256 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 12/252 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + KMQ+ S+H ++YG H V +ALNNP R+I +L T+ D + L Sbjct: 13 FNKMQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLIG 64 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHN 146 + V + K++ + HQG+A + P+ S L+ + + + +LD + D N Sbjct: 65 TRSYEIVNNDILSKLL-ENHTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + G Sbjct: 124 IGAIIRSAAAFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHG 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVS Sbjct: 184 FWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVS 243 Query: 267 NAAAVALYITQN 278 NAA++ + N Sbjct: 244 NAASIIFHSLHN 255 >gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis excentricus CB 48] gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis excentricus CB 48] Length = 322 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 155/299 (51%), Gaps = 26/299 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFL 51 N K S+ FS + YAK + R+ Y Q+ +++ +Q E+ ++ Sbjct: 17 NGPKKSGSKAAFSGQSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDGWI 76 Query: 52 YGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +G+H V AAL N SR +L T + L+ A V+ + + AV Sbjct: 77 WGLHAVEAALKNQSRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAV 136 Query: 111 HQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+AL PL L+ + L L++LD V DP NIGAILR+ AF G+I Sbjct: 137 HQGVALNGPPLEGDDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIM 196 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R+SP VLAK+A+GA++ +P+ R++NL+ AL+ + GF ++G++ +++ L+ + Sbjct: 197 QDRHSPVMQGVLAKTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVL 256 Query: 225 KNDK---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EG+GLR E + + MPG ++LNVS+A ++ALY Sbjct: 257 EQQGWRQAGSPRALVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALY 315 >gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis str. Arkansas] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 136/239 (56%), Gaps = 17/239 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKN---------ALARLDWDANLPHPFPVKTVPPQ 99 +++YG H +AAL N +RK +LL T+N + RL N+ +K V P Sbjct: 6 IWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNIN----LKQVNPN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + S T++ V N S +++LD V D HN+G+I+RSAV Sbjct: 62 YINSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAV 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ D II SPSE+ ++K++SGA++ IP + + N+ + ++ + G+ G + Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + + K +I G+E KG+R T+E + + + I +LNVSNAAAVALY Sbjct: 182 EGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240 >gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel] gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel] Length = 262 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 13/248 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVP 97 R + E +++ G H +AL NP+R +LL T L + A + ++ V Sbjct: 2 GRTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVA 61 Query: 98 PQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146 + I KI G VHQG+AL L D +R + +++LD V D +N Sbjct: 62 AEEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINN 121 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA F D +I + +SPSE+ ++ + +SGA + +P +R+ NL ++ + G Sbjct: 122 VGAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNG 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G+ D K L + ++ A+ILG+EGKG+R T+E + + M I +LNVS Sbjct: 182 YWCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVS 241 Query: 267 NAAAVALY 274 NAAA+ LY Sbjct: 242 NAAAIVLY 249 >gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] Length = 294 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 140/232 (60%), Gaps = 5/232 (2%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 R S +N FL+G H V AAL NP+R+ + +LLAT A ++ L H ++ V Q Sbjct: 52 RSKSDADN-FLWGRHPVLAALANPARRGMGRLLATAERAAEIE-QGQLAHGHKIEVVEVQ 109 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAF 157 + +++ AVHQGLA + PL +L+ + ++++LD + DP N+GAI RSA+AF Sbjct: 110 ALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNVGAIFRSALAF 169 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GI+ R++P+ + LAK+A GA E +P+ R++NL+ AL+++ G++ +GL + Sbjct: 170 GARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVGLDGTGE 229 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + LE+ + L++G+EG G+R E +A + MPG ++LNVSNAA Sbjct: 230 QTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAA 281 >gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 240 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + HQG+A + P+ S L+ + + + +LD + D NIGA Sbjct: 53 YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + GF Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SIIFH 236 >gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel] gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel] Length = 239 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 13 YMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNNDILSKLLENQT 69 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+A + P+ S L+ + +N + + +LD + D NIGAI+RSA AF + I+ + Sbjct: 70 -HQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAAAFDINAILLPQ 128 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 +P+ES +AK+A G LE IP I+++NL + + GF IGL+ + + Sbjct: 129 DNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTNKFIT 188 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +KIAL+ G+E KG+R ++T +A + + +++LNVSNAA++ ++ Sbjct: 189 NKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFHL 237 >gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 240 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + HQG+A + P+ S L+ + + + +LD + D NIGA Sbjct: 53 YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+ES +AK+A G LE IP I++ NL + + GF Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SIIFH 236 >gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 297 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 147/260 (56%), Gaps = 14/260 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R + K QSF QKS+ ++ +L+GVH V AAL N +R+ L + Sbjct: 35 RQAENAPKPQSF-QKSKVN---DDGWLWGVHAVEAALKNVNRQGPLKLYLSEERTKTIAP 90 Query: 85 ANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHV 141 A L V T+ I +++ + AVHQG+AL L L+++ ++++LD V Sbjct: 91 ALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHGPVLEGVGLESIMEGGDGVILMLDQV 150 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP NIGAI RSA AF G++ R+SP VLAK+A+GA + +P+ R++NL+ +L+ Sbjct: 151 TDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAGAADRVPFARVTNLSRSLEL 210 Query: 202 MHSWGFQTIGLSSDSK----KPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + G+ ++GL+ + + L Q+ I K+ L+LG+EG+GLR E +A + Sbjct: 211 LGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLVLVLGSEGEGLRRLVAEHCDHLARI 270 Query: 255 HMPGIIKALNVSNAAAVALY 274 MPG ++LNVS+AA+++LY Sbjct: 271 PMPGGFESLNVSHAASISLY 290 >gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 240 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 133/245 (54%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + +HQG+A + P+ S L+ + + + +LD + D NIGA Sbjct: 53 YEIVNNDILSKLLENQ-IHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+E+ +AK+A G LE IP I+++NL + + GF Sbjct: 112 IIRSAAAFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SILFH 236 >gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 240 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + HQG+A + P+ S L+ + + + +LD + D NIG Sbjct: 53 YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGT 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + GF Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SIIFH 236 >gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] Length = 264 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 125/250 (50%), Gaps = 12/250 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PF 91 Q + R T P+ FL+G+H V A + ++FQL K A RL L Sbjct: 7 QRSSGSKRGTKSPQ--FLFGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQALATQLGL 64 Query: 92 PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P + V Q +D V A HQG+ L L LD V N L++VLD V DP Sbjct: 65 PTQYVERQQLDDWV-DGARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVLDGVTDP 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA LRSA D +I K S +AV K A GA E P+I+++NL L+ + Sbjct: 124 HNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLARTLKGLAE 183 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +GL+ + L + + +AL++GAEG GLR T+E+ + + M G + +LN Sbjct: 184 RGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGGSVSSLN 243 Query: 265 VSNAAAVALY 274 VS AA V LY Sbjct: 244 VSVAAGVCLY 253 >gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] Length = 240 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + HQG+A + P+ S L+ + + + +LD + D NIGA Sbjct: 53 YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+E+ +AK+A G LE IP I+++NL + + GF Sbjct: 112 IIRSAAAFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SILFH 236 >gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha proteobacterium HOT2C01] Length = 257 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 Q + ++YG H V AL N +R +++ T A +L + L + +K + ID Sbjct: 13 QNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINVISIKKTRDE-ID 71 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ + HQG+ + L +P L D + N ++ +LD ++DP N+GAI RSA+AF Sbjct: 72 LLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQNVGAIFRSALAF 131 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + DGII T S +E++ LAK+AS AL+ +P+I+I N++ ++ + G+ GL ++ Sbjct: 132 NIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDSGYWIYGLDMKAE 191 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + KI ILG+E KG+R T + M +++LNVSN AA+ ++ Sbjct: 192 RSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNVSNTAAIIMFYVS 251 Query: 278 N 278 N Sbjct: 252 N 252 >gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] Length = 236 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 131/229 (57%), Gaps = 17/229 (7%) Query: 59 AALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 +AL N +R+ +LLAT+N R D+ V+ V + ++ ++ K A HQ Sbjct: 2 SALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVESKILNDVLPKGANHQ 58 Query: 113 GLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 G+AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ Sbjct: 59 GIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHN 118 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226 +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ ++ EIK+ Sbjct: 119 HSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENID-EIKSF 177 Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 178 EKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 5/182 (2%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155 P I + AVHQG AL+T+ + +L+AV LL+VLD + DPHN+GAILRS Sbjct: 24 PGQITSRLPDGAVHQGFALKTSAPPAESLNAVLEPTHGLLVVLDQITDPHNVGAILRSCA 83 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF +I R SP L K+A G E IP ++++N+ D L + G IGL+ + Sbjct: 84 AFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQVQVTNIADTLIALQEAGRHVIGLAGE 143 Query: 216 SKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ L EI + L+LGAEG GLRP+ E +S+A + M ++LNVSNAAA+A Sbjct: 144 AEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAEHCSSLARIPMGPKAESLNVSNAAAIA 203 Query: 273 LY 274 LY Sbjct: 204 LY 205 >gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 289 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 15/249 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R+ K ++++S+ ++ +++G H V AA+ N R+I +L T+NA AR +L Sbjct: 25 RNTSKRPDYSRRSKPAGTGDSGWIWGRHAVLAAVANKRREILELKVTRNA-AR-----DL 78 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPH 145 P + V P+ ID + + AVHQG A L S +++ V + L+VLD + DPH Sbjct: 79 PDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESVNGVIDPTHGALLVLDQITDPH 138 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+LRSA AF +I R +P + KSA GA E + ++R++N+ D L + Sbjct: 139 NVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAAERVAHVRVTNIADTLLEFSKA 198 Query: 206 GFQTIGLSSDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 G +GL+ +++ L + + L++G+E KGLR + E + + M Sbjct: 199 GRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSEDKGLRQRVAECCDQLVRIPMTD 258 Query: 259 IIKALNVSN 267 +++LNVSN Sbjct: 259 TVESLNVSN 267 >gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] Length = 252 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 17/239 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA---------LARLDWDANLPHPFPVKTVPPQ 99 +++YG H AAL N +R+ +++L T+N ++ L N+ +KTV Sbjct: 6 IWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNIN----LKTVNLN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + T++ + NS + ++LD + D HN+GAI+RSAV Sbjct: 62 YINSVLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAV 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ D II SPSE+ ++K++SGA++ IP + NL ++ + G+ G + Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + ++K +I G+E KG+R T+E + + I +LNVSNAAAVALY Sbjct: 182 EGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240 >gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] Length = 261 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106 +++ G H AAL NP+R +L T L + A + V K V + I KI+G Sbjct: 11 MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 70 Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+AL L +R + +++LD V D +N+GAI+RSA Sbjct: 71 HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 130 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F D +I + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + Sbjct: 131 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY Sbjct: 191 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 249 >gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Puerto Rico] gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Virginia] Length = 251 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106 +++ G H AAL NP+R +L T L + A + V K V + I KI+G Sbjct: 1 MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 60 Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+AL L +R + +++LD V D +N+GAI+RSA Sbjct: 61 HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F D +I + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + Sbjct: 121 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY Sbjct: 181 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 239 >gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] Length = 236 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 17/229 (7%) Query: 59 AALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 +AL N +R+ +LLA +N R D+ V+ V + ++ ++ K A HQ Sbjct: 2 SALTNQNRRCIELLAPENFYREHKKEIRQCVDS---KGIKVRLVESKILNDVLPKGANHQ 58 Query: 113 GLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 G+AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ Sbjct: 59 GIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHN 118 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226 +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ ++ EIK+ Sbjct: 119 HSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENID-EIKSF 177 Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 178 EKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel] gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 14/244 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102 +++YG H AAL N +RK +LL T+N + ++ + + +P K V TI+ Sbjct: 6 IWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNINTIN 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAF 157 ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSAV F Sbjct: 65 SVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCF 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 125 NVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQG 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--I 275 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 185 EPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIF 244 Query: 276 TQNH 279 QNH Sbjct: 245 IQNH 248 >gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 14/244 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102 +++YG H AAL N +RK +LL T+N + ++ + + +P K V TI+ Sbjct: 6 IWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNLNTIN 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAF 157 ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSAV F Sbjct: 65 SVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCF 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 125 NVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQG 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--I 275 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 185 EPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIF 244 Query: 276 TQNH 279 QNH Sbjct: 245 IQNH 248 >gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 138/243 (56%), Gaps = 12/243 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-----TIDK 103 +++YG H AAL N +RK +LL T+N + + + K + P+ TI+ Sbjct: 6 IWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYPKQVNLNTINS 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFS 158 ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSAV F+ Sbjct: 66 VLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCFN 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + + Sbjct: 126 VHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQGE 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--IT 276 PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 186 PLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIFI 245 Query: 277 QNH 279 QNH Sbjct: 246 QNH 248 >gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] Length = 240 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 12/245 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ+ S+H ++YG H V +ALNNP R+I +L T+ + L Sbjct: 1 MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149 + V + K++ + HQG+A + P+ S L+ + + + +LD + D NIGA Sbjct: 53 YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + F Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + ++ +DK L+ G+E KG+R ET +A + + +++LNVSNAA Sbjct: 172 IGLTGSANDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231 Query: 270 AVALY 274 ++ + Sbjct: 232 SILFH 236 >gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 12/231 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +++G H AALNNP R I + T++ L + L K V + + +++G + Sbjct: 32 YIFGTHASLAALNNPLRVIRYIYCTESCFLSL---SKLIQKHDYKIVTTKFLHQLLGSQI 88 Query: 110 VHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG+A+ T PL T++ +++ L + +LD + D +N+GAI+RSA AF+ II Sbjct: 89 VHQGIAVNTIPL---TINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNISTII 145 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S E+ +AK A GALE I +++ NL + + + +GF IGL ++ L ++ Sbjct: 146 LPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQLTEQ 205 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+A +LG+E KGLR T++ + + M ++LNV+ AA + Y Sbjct: 206 TFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFY 256 >gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 50 FLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105 L G+H V AL NP +I ++A RL +L PV+ P ++D++ Sbjct: 3 LLSGIHPVVEALRAGNPLERI--VIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLA 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G A HQG+ A LD+V S++L+VLD V DPHN+GAI+R+A A +I Sbjct: 61 GSSA-HQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVP 119 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R + + V+AK+A+GALEH+P +R++N+ AL+ + G GL + +Q Sbjct: 120 ERRAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDY 179 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+LG EGKGL + ++ + + M G I +LNVS AA V L+ Sbjct: 180 AKKSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLF 228 >gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] Length = 287 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H V AL P R ++F T A D V+TVP I+ +VG Sbjct: 48 FVFGRHAVVEALQTPDRVNRVFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVGN 107 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQGL A L+ V +++LD V DPHN+G+ILR+A A Sbjct: 108 -AVHQGLVASIAAYEYADLEDVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVH 166 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S S +A +AK+++GA+EH+P +R++NLT ++++ + G G + Sbjct: 167 GIIIPKRRSASLTATVAKASTGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNGTDYR 226 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K +A+++G EGKG+ +E+ M + M G +++LN S A+A+ +Y Sbjct: 227 KWNTKG-PLAIVMGNEGKGVSRIVKESVDEMVTIPMVGHVQSLNASVASALMMY 279 >gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] Length = 247 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G H V AL NP+RK+ ++ T++A + + + N+ V + +DK Sbjct: 6 FFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKELDKYT 65 Query: 106 GKEAV-HQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 KE + H G E L P L + + LD V DP NIG+++RSA +F DG Sbjct: 66 SKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASFKIDG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R+ PS+S ++ KSASG +EH+ ++SN+ L+ + F G + +K Sbjct: 126 LIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGEKNFT 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+ G+EG G++ T + A + + I++LN+SN+AA+ + Sbjct: 186 DVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFH 238 >gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 250 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 134/244 (54%), Gaps = 3/244 (1%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 Q + R + P L+LYG+HTV+AAL NP R++ +LL T A A L P Sbjct: 1 QDAGRAPREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQA 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-LLMVLDHVNDPHNIGAIL 151 + V + ++AVHQG AL PL L DA+ S+ +++LD V DP N+GAIL Sbjct: 61 ERVERARFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF ++ R +P E+ +A++A GAL+ +P +R NL + + G+ +G Sbjct: 121 RSAAAFGAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMG 180 Query: 212 LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L +K L D+ AL+LGAE GLR +ET + L + +++LNVS AAA Sbjct: 181 LDGTAKTELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAA 240 Query: 271 VALY 274 +ALY Sbjct: 241 IALY 244 >gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 428 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 14/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIV 105 +++G H+V AALN R I ++ T + + L ++ VP + ++ Sbjct: 190 WIWGKHSVFAALN-SERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQLT 248 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+AL+ A S +L+ + ++ +++ LD V DPHN GAI+RSA AF Sbjct: 249 SG-AVHQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEAFD 307 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 C GII +R S + +AK A+GALEHIP R+ NL A+ ++ GF IGLS D + Sbjct: 308 CKGIIVPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDGQV 367 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQ 277 P+ + + + +I+GAE KG+ Q+ + + + G +LN S AAA++L Y++ Sbjct: 368 PISEFKEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCYLSN 427 Query: 278 N 278 N Sbjct: 428 N 428 >gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] Length = 249 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106 L G H V+A L + +R I ++ N R D V+ +P + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ AL A L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237 >gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15] Length = 280 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 131/249 (52%), Gaps = 16/249 (6%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPP 98 +H + + +LYG H+V AAL + RK+ L + RL +A P+ Sbjct: 13 KHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGVPIHYEAS 72 Query: 99 QTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + +G E+VHQG+AL+ PL L P N L+ VLD V DPHN+GAI+ Sbjct: 73 RWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPN--LVFVLDGVEDPHNLGAIV 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F + K + + S V AK++ GALE +R++NL L++ G+ +G Sbjct: 130 RTLGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRGYWVVG 189 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAA 269 L S+ PL Q + + ++LGAEG GLRP T+ T + + +PG +++LNVSNAA Sbjct: 190 LDGASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWL--VSIPGTPEVESLNVSNAA 247 Query: 270 AVALYITQN 278 AV Y +N Sbjct: 248 AVTCYHLRN 256 >gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 249 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106 L G H V+A L + ++ I ++ N R D V+ +P + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ AL A L LD + S LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237 >gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] Length = 349 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 7/177 (3%) Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+AL+ A + +LD + N+ + + LD + DPHN+GAI+RSA AF C G Sbjct: 172 AVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKG 231 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEHIP R+ NL A+ ++ GF +GLS D + P+ Sbjct: 232 IIIPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPIS 291 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + I +++GAE KG+ TQ+ + + + G +LN S AAA++L N Sbjct: 292 KFDQKAPIVVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYLSN 348 >gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 112/192 (58%), Gaps = 5/192 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V + DKI + HQG+ LE T+D V+++ L++LD + DPHN+GAI Sbjct: 45 IEISFVDKRFFDKI---DMNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAI 101 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA +F DG+I +R S S ++ + K+++GA+ +I IR++NLT ++ + GF Sbjct: 102 IRSAESFGFDGVIIPERRSASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIY 161 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL+ ++ + + K+ L++G EG+G+ +E + ++ M G + +LN S AA Sbjct: 162 GLAGEADSDISKADLKGKVTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAG 221 Query: 271 VALY--ITQNHF 280 +++Y + QN F Sbjct: 222 ISMYELLRQNGF 233 >gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Mississippi] Length = 244 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 13/229 (5%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAV-HQGLA 115 AAL NP+R +L T L + A + V K V + I KI+G + HQG+A Sbjct: 4 AALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQGIA 63 Query: 116 LETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 L L +R + +++LD V D +N+GAI+RSA F D +I Sbjct: 64 LMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILP 123 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + K L + Sbjct: 124 EHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEISF 183 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY Sbjct: 184 CERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 232 >gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] Length = 247 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 18/241 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH------PFPVKTVPPQT 100 E +++G+H V A L S +I +L + R D N KTVP + Sbjct: 3 EEHWVFGIHAVEALLQGQSNRIEELWLQQ---GRNDKRINELQLHARQVGVKCKTVPREE 59 Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +DK V + HQG+ T P L LD + + LL++LD V DPHN+GA LR+ Sbjct: 60 LDKQV--DGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRT 117 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D +I K S +A + K A GA E +PYI+++NL ++ + G G + Sbjct: 118 ADAAGVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTA 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++++ + Q +AL++GAEGKG+R T+E + +L M G + +LNVS A V L Sbjct: 178 GEAEQSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCL 237 Query: 274 Y 274 + Sbjct: 238 F 238 >gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 110/191 (57%), Gaps = 5/191 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + V + DKI E HQG+ +E L + Q L++LD + DPHN+GAI+R Sbjct: 52 INFVDKRFFDKI---ELNHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIR 108 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA +F DG+I +R S S S ++ K+++GA+ +I I + N A++++ GF GL Sbjct: 109 SAESFGFDGVIIPERRSASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGL 168 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ P++Q K+ LI+G EGKGL +E + ++ M G + +LN S A+A+A Sbjct: 169 AGEASSPIDQVDLKGKVCLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIA 228 Query: 273 LY--ITQNHFA 281 +Y + QN F+ Sbjct: 229 MYEVLRQNGFS 239 >gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 242 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +++G H AALNNP R I + T++ L + L K V + + +++G + Sbjct: 8 YIFGTHASLAALNNPFRVIRYIYCTESCFLSL---SKLIQKHNYKIVTTKFLHQLLGSQI 64 Query: 110 VHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG+A+ T PL T++ ++N L + +LD + D +N+GAI+RSA AF II Sbjct: 65 VHQGIAVNTIPL---TINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDISTII 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S E+ +AK A GALE I +++ NL + + + F IGL + L ++ Sbjct: 122 LPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQLTEQ 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K A +LG+E KGLR T++ + + M ++LNV+ AA + Y Sbjct: 182 TFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFY 232 >gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] Length = 248 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 +LYG+H+VSA L ++ +L + + D H + +P +T+D + Sbjct: 6 WLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMDHQLE 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+A+ P L ++ L+ LD + DPHN+GA LRSA A Sbjct: 66 EGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSADAAGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK 217 +ITT+ S SA + K A GA E +P+I+++NL L+ + G G LS +K Sbjct: 126 HAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALSEGAK 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +++ + I +++GAEG GLR TQ+ + ++ M G +++LNVS A V L+ Sbjct: 186 TIYETDLRGN-IGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLF 241 >gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 35/248 (14%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFP 92 +N +YGVH V+ AL N K++ ++LAT+ ++ + W P Sbjct: 9 QNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVS-ISWT-------P 60 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHN 146 KT+ T AVHQG L + LD++ + L+++LD +NDPHN Sbjct: 61 KKTLSDMT------NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHN 114 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A A + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ G Sbjct: 115 FGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQG 174 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + P + K+ALI+G EGKG+ P ++ M + M G +++LN S Sbjct: 175 FWVFGTDMNG-TPSHKWNTAGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNAS 233 Query: 267 NAAAVALY 274 AAAV +Y Sbjct: 234 VAAAVLMY 241 >gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp] Length = 250 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L H PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLF 238 >gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] Length = 254 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 18/247 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQL---LATKNALARLDWDANLPH-----PFPVK 94 + +P +YG H V A L + + ++ L ++A AR +L H + Sbjct: 2 SEKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARAR-----DLVHQARDSGVKLA 56 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V + ++VGK A HQG+ P+ L L+++ LL++LD V DPHN+GA Sbjct: 57 QVEADRLGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGA 116 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILRSA AF +I K + +A + K ASGA + +PY+ ++NL ++++ Sbjct: 117 ILRSADAFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWV 176 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 I D ++PL +A +LGAEG G+R ++ +A + + G +++LNVS +A Sbjct: 177 IAADMDGEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSA 236 Query: 270 AVALYIT 276 A+ LY T Sbjct: 237 ALCLYET 243 >gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] Length = 250 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 17/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDK 103 F+YGVH VSA L NP R +L +++ R+D D + ++ + Q +++ Sbjct: 5 FVYGVHAVSALLANPHRTTKKLFVSQD---RVDKRLQDLVDKAVQARIGIEKLSTQQMNQ 61 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+ + L L L++ ++ L+++LD + DPHN+GA LR+A A Sbjct: 62 RFA-EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ K S S + V++K A GA E +P +R++NL ++ + G G + ++ Sbjct: 121 TGVDFVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q IAL++GAEG+GLR T+E + L M G + +LNVS A V+LY Sbjct: 181 EHSLYQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLY 238 >gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106 L G H V+A L + +R I ++ N R D V+ +P + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ AL A L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237 >gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106 L G H V+A L + ++ I ++ N R D V+ +P + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ AL A L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237 >gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CMR15] Length = 249 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106 L G H V+A L + +R I ++ N R D V+ +P + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ AL A L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237 >gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] Length = 248 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 14/244 (5%) Query: 41 RHTSQPENL-FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTV 96 R+ EN +YGVH V +L N K++ L KN D A P+ Sbjct: 2 RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAE--KKVPISWT 59 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 P +T+ + K AVHQG L + + + ++ LL++LD +NDPHN G+I Sbjct: 60 PKKTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A + GII TK + + V+AK+++GA+EHIP R++NL AL K+ + GF Sbjct: 119 LRTADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + P Q + K+ALI+G EG+G+ ++ M + M G +++LN S AAA Sbjct: 179 GTDMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAA 237 Query: 271 VALY 274 + +Y Sbjct: 238 ILMY 241 >gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] Length = 218 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 119/217 (54%), Gaps = 18/217 (8%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NN KI +L KN +K V P I+ ++ + HQG+AL+ + + Sbjct: 4 NNEISKILRLCKQKN--------------INLKQVNPNYINSVLPHNSNHQGIALKASVI 49 Query: 122 LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 S T++ V N S +++LD V D HN+G+I+RSAV F+ D II SPSE+ ++ Sbjct: 50 DSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIILPYHNSPSENCGMS 109 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K++SGA++ IP + + N+ + ++ + G+ G + + L + + K +I G+E Sbjct: 110 KTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSED 169 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG+R T+E + + + I +LNVSNAAAVALY Sbjct: 170 KGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 206 >gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] Length = 248 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 14/242 (5%) Query: 44 SQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 S+P+ FL+G+H V AAL P ++ K+A R DA V+ V Q Sbjct: 2 SEPQ--FLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQA 59 Query: 101 IDKIVGKEAVHQGLALE----TAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 ++++ A HQG+ E P ++ P L S LL+VLD V DPHN+GA LR Sbjct: 60 LERLC-PGARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A D +I + + + V K ASGA E +P+++++NL L ++ G IG Sbjct: 119 TADAAGVDAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S D+ + L Q IA+++GAEG+G+R T+E + ++ M G + +LNVS A V Sbjct: 179 SGDAPQTLYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVC 238 Query: 273 LY 274 L+ Sbjct: 239 LF 240 >gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] Length = 251 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ LA + R+ L V + + V E Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A + Sbjct: 66 VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + + Sbjct: 126 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q++ I LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQ 242 >gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12D] Length = 250 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V+A L + ++ I ++ N R D V+ +P D++ G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64 Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 65 GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IA+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237 >gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 258 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105 ++YG+H VSA L NP R I +L ++ R+D H F VK VP I+K+ Sbjct: 14 YVYGLHAVSALLANPHRMIKKLFVNQD---RID---KRLHEFLVKAENAHVP---IEKLS 64 Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + E HQG+ + L L L+ + L+++LD + DPHN+GA L Sbjct: 65 AQKMNQQFSEFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACL 124 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ K S S + V++K A GA E IP +R++NL A+ + G G Sbjct: 125 RSADATGVDFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 184 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++ L + IAL++GAEG GLR T+E + L M G +++LNVS A V Sbjct: 185 AAGEAENLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 244 Query: 272 ALY 274 +LY Sbjct: 245 SLY 247 >gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] Length = 248 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++A+ N + + ++L +A L ++ A + V+ V Q +D Sbjct: 4 QNQWVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQAR-RYGIEVRKVATQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 I G HQG+A A L+ ++A LL+VLD V DPHN+GA LRSA+ Sbjct: 63 GI-GGNVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSAL 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ + S +A + K+++GA + +P ++++NL L+++ G GL+ + Sbjct: 122 AAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L +AL+LG E GLR T+ET + + MPG +++LNVS AA V L+ Sbjct: 182 VDETLYGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLF 240 >gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] Length = 251 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ +PP+ +++ E VHQG+ + P++ LD + + LL+V+DH+ DPHN+GA+ Sbjct: 59 VPVELLPPERFERVARTE-VHQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAV 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF DG++ + S + + K A+G +E + + +S++ AL+++ + G ++ Sbjct: 118 LRSAAAFGADGVVLPRYRSVPLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSV 177 Query: 211 GLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL +D+ + + +++AL++GAEG+GL P + A + + + +LN S AA Sbjct: 178 GLDADAATSVFSLTLATERLALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAA 237 Query: 270 AVAL 273 ++AL Sbjct: 238 SIAL 241 >gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1] gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 244 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQT--IDK 103 E+ +YG H V L +F+L L+ + AR L V+ + + +D Sbjct: 2 ESRLIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDG 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ L+ L+ + + L++VLD V DPHN+GA LR A A Sbjct: 62 MVGTRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ K + +A K ASGA + +PY+ ++NL AL++M G +G + +++K Sbjct: 121 AHAVVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEK 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + L+ Sbjct: 181 SVYEVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLF 236 >gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 248 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 +N ++G H V++ L + + + ++ R D A + Q +DK Sbjct: 2 KNKVIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDK 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ APL L LD++ + LL+VLD + DPHN+GA LR A + Sbjct: 62 MVGTRR-HQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A + K ASGA E +PYI ++NL L+++ +G + DS K Sbjct: 121 AHAVIAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDK 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + A ++G+EG+G+R T+ET + + M G +++LN+S A+ + LY Sbjct: 181 SLYEPDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLY 236 >gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] Length = 254 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 +YG H VSA L + + ++ L+ AR+ + VP + +D +VG Sbjct: 12 LIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPSEHERLDALVG 71 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A L+ LD + + L++VLD V DPHN+GA LR A A Sbjct: 72 TRR-HQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACLRVADAAGAHA 130 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K + +A AK ASGA + +PYI ++NL AL++M G +G + +++K + Sbjct: 131 VVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVGAAGEAEKSVY 190 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + +A +LGAEG GLR T++T +A + M G +++LNVS A+ + L+ Sbjct: 191 QVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGICLF 243 >gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 251 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ LA + R+ L V + + V E Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A + Sbjct: 66 VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + + Sbjct: 126 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSIYD 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q++ I LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLF 237 >gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] Length = 245 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 13/235 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G+H V+ AL +++I ++L K + RL D L ++ V + ++++V Sbjct: 6 LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRL-IDTALDLRIRIEQVSKRELEELV- 63 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K AVHQG+ P+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 64 KGAVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S +A AK A GA E +PY+ ++NL L+ + G T G + ++ Sbjct: 124 QAVVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +ALI+GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 184 IYQANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLF 238 >gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ A + +L+ + RN+ +++ LD + DPHN+GAI+RSA AF C G Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEH+P R+ NL AL+++ GF IGLS D + + Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +I+GAE KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLF 331 >gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxidans DMS010] gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxydans DMS010] Length = 246 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V AAL+ P +I ++ LA R+D A V T+DKI Sbjct: 5 VIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKI-A 63 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG A PL L ++++ LL++LD V DPHN+GA LR+A A Sbjct: 64 PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A K +SGA E +P+ +++NL+ ++++ G +G S DS+ Sbjct: 124 HAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSELS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +A++LGAEGKG+R T++ + ++ M G ++LNVS AA V LY Sbjct: 184 LFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLY 238 >gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 282 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 15/250 (6%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPF 91 + +S Q F+YG H V AL P R L + AL+ + D H Sbjct: 30 YTPESSSNEQESTDFVYGRHAVREALQQPER--VNKLWVQEALSGKEITPIIDLAKEHRI 87 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 ++ VP + +VG E VHQG+ A TL+ V +++LD + DP Sbjct: 88 QIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLEDVFEKAQEKNEDPFILILDGIEDP 146 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 +N+G+ILR+A A GII KR S S ++ +AK+++GA+EH+P +R++NLT ++++ Sbjct: 147 YNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKASTGAIEHVPVVRVTNLTQTIEQLKE 206 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + K IA+++G EGKG+ ++ M + M G +++LN Sbjct: 207 RGVWVFGTDMKGTDYRQWNTKG-PIAIVMGNEGKGVSRIVKDAVDEMITIPMTGHVQSLN 265 Query: 265 VSNAAAVALY 274 S A+A+ +Y Sbjct: 266 ASVASALMMY 275 >gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 248 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L F PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ + LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238 >gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] Length = 279 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ F++G H V+ AL K+F A + RL A PVK VP Q +D + Sbjct: 38 EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ L P TLD + + L ++LD++ DPHN G+I+R+A A D Sbjct: 97 -SDQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217 GII K + + ++ K+++GA+EHIP R++NLT A+Q++ GF G SD + Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + LI+G EG+G+ ++ M + M G +++LN S AA + +Y Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268 >gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 279 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ F++G H V+ AL K+F A + RL A PVK VP Q +D + Sbjct: 38 EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ L P TLD + + L ++LD++ DPHN G+I+R+A A D Sbjct: 97 -SNQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217 GII K + + ++ K+++GA+EHIP R++NLT A+Q++ GF G SD + Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + LI+G EG+G+ ++ M + M G +++LN S AA + +Y Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268 >gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas aeruginosa UCBPP-PA14] Length = 248 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L F PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238 >gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 279 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ F++G H V+ AL K+F A + RL A PVK VP Q +D + Sbjct: 38 EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ L P TLD + + L ++LD++ DPHN G+I+R+A A D Sbjct: 97 -SDQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217 GII K + + ++ K+++GA+EHIP R++NLT A+Q++ GF G SD + Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + LI+G EG+G+ ++ M + M G +++LN S AA + +Y Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268 >gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1] gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 248 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L F PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238 >gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2] gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] Length = 248 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L F PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238 >gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b] Length = 249 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 ++YG+H VSA L NP R I +L ++ + D L H F P++ + Q Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLIKAENAHVPIEKLSAQK 58 Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +++ E HQG+ + L L L+ + L+++LD + DPHN+GA LRS Sbjct: 59 MNQQF-SEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRS 117 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D ++ K S S + V++K A GA E IP +R++NL A+ + G G + Sbjct: 118 ADATGVDFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAA 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ L + IAL++GAEG GLR T+E + L M G +++LNVS A V+L Sbjct: 178 GEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSL 237 Query: 274 Y 274 Y Sbjct: 238 Y 238 >gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 251 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 138/247 (55%), Gaps = 18/247 (7%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF--QLLATKN--ALARLDWDANLPHPFPV 93 K +H + ++ +YGVH V+ +LN N K++ + L KN A+ L + + + Sbjct: 5 KDKHLQETTDM-VYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVS----I 59 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNI 147 P +T+ ++ + AVHQG L + L D ++ ++ L+M+LD + DPHN Sbjct: 60 SWTPKKTLSEMT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNF 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A GII K + + V++K+++GA+EH+P R++NL+ L K+ GF Sbjct: 119 GSILRTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGF 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G D P+++ + K+ALI+G+EGKG+ ++ M + M G +++LN S Sbjct: 179 WIFGTDMDG-TPVQKWNTSGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASV 237 Query: 268 AAAVALY 274 AAAV +Y Sbjct: 238 AAAVLMY 244 >gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] Length = 278 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 11/256 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD 84 N +D +K K + F++G H V AL K+F L + R+D Sbjct: 14 NKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDARGE--RIDEV 71 Query: 85 ANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVL 138 L PVK VP Q +++ ++ VHQG+ L P +LD + ++L Sbjct: 72 KELSKEQSVPVKWVPKQKLEQY-SQQGVHQGMVLAITPYEYLSLDELLAKSPEKPFFIIL 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EH+P R++NL+ A Sbjct: 131 DNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIARVTNLSQA 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +Q + GF T G + + + IALI+G EG+G+ +++ + + M G Sbjct: 191 VQTLKERGFWTFGTAMEGTNYRSWNTQG-AIALIIGNEGRGMSEGLKKSVDELLTIPMVG 249 Query: 259 IIKALNVSNAAAVALY 274 +++LN S AA + +Y Sbjct: 250 HVQSLNASVAAGLLMY 265 >gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1] gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 255 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 8/237 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ LA R+ L + V+ + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 127 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 187 QDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQ 243 >gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] Length = 248 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 14/244 (5%) Query: 41 RHTSQPENL-FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTV 96 R+ EN +YGVH V +L N K++ L KN D A P+ Sbjct: 2 RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAE--KKVPISWT 59 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 P +T+ + K AVHQG L + + + ++ LL++LD +NDPHN G+I Sbjct: 60 PKKTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A + GII K + + V+AK+++GA+EHIP R++NL AL K+ + GF Sbjct: 119 LRTADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + P Q + K+ALI+G EG+G+ ++ M + M G +++LN S AAA Sbjct: 179 GTDMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAA 237 Query: 271 VALY 274 + +Y Sbjct: 238 ILMY 241 >gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325] gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325] Length = 271 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 18/267 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNP---SRKIFQLLAT 74 +++N+ YK+++ N++ + Q P+ + G + + A+ + ++ +FQ Sbjct: 1 MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131 K L + AN + VP + +D + HQG+ AP LD V N Sbjct: 61 KGRLKSIFAIAN-EKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLD 117 Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S L++LDH+ DPHN+GAI+R+A A GII KR + S K+++GA+EH+P Sbjct: 118 INKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247 IR+S+LTDA++K+ GF G + + +I D +A+++G EG+G+ + Sbjct: 178 VIRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264 >gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V+A L + ++ I ++ N R D V+ +P D++ G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64 Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 65 GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237 >gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12J] Length = 250 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V+A L + ++ I ++ N R D V+ +P D++ G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64 Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 65 GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237 >gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] Length = 249 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 ++YG+H VSA L NP R I +L ++ + D L H F P++ + Q Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLIKAENAHVPIEKLSAQK 58 Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +++ E HQG+ + L L L+ + L+++LD + DPHN+GA LRS Sbjct: 59 MNQQF-SEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRS 117 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D ++ K S S + V++K A GA E IP +R++NL A+ + G G + Sbjct: 118 ADATGVDFVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAA 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ L + IAL++GAEG GLR T+E + L M G +++LNVS A V+L Sbjct: 178 GEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSL 237 Query: 274 Y 274 Y Sbjct: 238 Y 238 >gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] Length = 247 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 123/234 (52%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ +L N K++ L KN A A + P +T+ + G Sbjct: 11 IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LS +D V + L+++LD +NDPHN G+ILR+A A Sbjct: 69 G-AVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRTADATQVT 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G D P Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMDG-TPS 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 187 HKWNTAGRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240 >gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] Length = 249 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG H V+A L + + + ++L T+ +D+ A +T + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADETRLWGLAH 65 Query: 108 EAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ +E PL L+ LD ++ LL+VLD V DPHN+GA LR A A I Sbjct: 66 TERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAI 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G IG + D+ L + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + ++ M G +++LNVS A+ V LY Sbjct: 186 TKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLY 237 >gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] Length = 247 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVYDTEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL+LGAEG+G+R T+ET + H+ M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLF 237 >gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 249 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105 ++YG+H VSA L NP R I +L ++ + D L H F VK VP I+K+ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLVKAENAHVP---IEKLS 55 Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + E HQG+ + L L L+ + L+++LD + DPHN+GA L Sbjct: 56 AQKMNQQFSEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACL 115 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ K S + + V++K A GA E IP +R++NL A+ + G G Sbjct: 116 RSADATGVDFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 175 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++ L + IAL++GAEG GLR T+E + L M G +++LNVS A V Sbjct: 176 AAGEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 235 Query: 272 ALY 274 +LY Sbjct: 236 SLY 238 >gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 250 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL LA R+ L + PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + + ++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLF 238 >gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio salmonicida LFI1238] Length = 247 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100 N FL+G+H A L + ++ K R D D LP F ++ +P +T Sbjct: 3 NEFLFGIHATKAVLERDPARFIEIFVLK---GRED-DRLLPIITELGELGFKIQELPRKT 58 Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D K A HQG+ P L +D N L +VLD V DPHN+GA LR+ Sbjct: 59 LDD-KAKGANHQGIIARVTPAKQLNERDLDDIMDKTENP-LFLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I K S S +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 117 ADGAGVAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ K + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L Sbjct: 177 GEATKDVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] Length = 248 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ +L N K++ + L KN D N + P +T+ + Sbjct: 10 NDMVYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARN--KKVSISWAPKKTLSDM 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L+ + + L+++LD + DPHN G+ILR+A A Sbjct: 68 T-EGAVHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATK 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EH+P R++NL+ AL K+ GF G D Sbjct: 127 VSGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDG-T 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+++ + K+ALI+G+EGKG+ ++ M + M G +++LN AAAV +Y Sbjct: 186 PVQKWNTSGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFR 245 Query: 279 H 279 H Sbjct: 246 H 246 >gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 245 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 123/245 (50%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H VSA LNN ++ ++ A K N L RL ++ V Q Sbjct: 5 IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLG--------ITIQFVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 T+DK E VHQG+ P L LD + +Q LL+VLD V DPHN+GA LR+ Sbjct: 57 TLDKKAEGE-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL----QKMHSWGFQT 209 A A +I K S +A+ K A GA E +P IR++NL L QK + W Sbjct: 116 ADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIW---V 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEATNTLYQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] Length = 251 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 46 PENL---FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQ 99 PEN +YG H VSA L + + ++ T K+A R + Sbjct: 5 PENTPTRLIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQSEGD 64 Query: 100 TIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D +VG HQG+ + L+ LD++ + L++VLD V DPHN+GA LR A Sbjct: 65 KLDALVGTRR-HQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACLRVA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A ++ K + +A K ASGA + +PYI ++NL AL++M G +G + Sbjct: 124 DAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVGAAG 183 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++K L + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + L+ Sbjct: 184 EAEKTLYGVDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLF 243 >gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105 ++YG+H VSA L NP R I +L ++ + D L H F VK VP I+K+ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLVKAENAHVP---IEKLS 55 Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + E HQG+ + L L L+ + L+++LD + DPHN+GA L Sbjct: 56 SQKMNQQFSEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACL 115 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ K S + + V++K A GA E IP +R++NL A+ + G G Sbjct: 116 RSADATGVDFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 175 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++ L + IAL++GAEG GLR T+E + L M G +++LNVS A V Sbjct: 176 AAGEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 235 Query: 272 ALY 274 +LY Sbjct: 236 SLY 238 >gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] Length = 276 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ +L N K++ L KN D A + P +T++ + Sbjct: 37 NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAA--EKKVSISWTPKKTLNDM 94 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + LD + + L+++LD +NDPHN G+ILR+A A + Sbjct: 95 TNG-AVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADATN 153 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 154 VTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGTS 213 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ P ++ M + M G +++LN S AAAV +Y Sbjct: 214 SHKWNTSG-KLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 268 >gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] Length = 247 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ +L N K++ L KN A A + P +T+ + G Sbjct: 11 IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LS +D + L+++LD +NDPHN G+ILR+A A Sbjct: 69 G-AVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G D P Sbjct: 128 GIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDG-TPS 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 187 HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240 >gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] Length = 232 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 86/144 (59%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++VLD V DP N GAI+RSA F DGII R S + + KS++GA+EH+ Sbjct: 84 KEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSSTGAIEHVDI 143 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++++N++D + K+ +G+ G +D + QE +K L+LG+EG G+R K +E Sbjct: 144 VKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYPEKACLVLGSEGNGMRKKVKEHCD 203 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + +H+ G I +LNVS A + L Sbjct: 204 KIVKIHLKGEINSLNVSVAGGIIL 227 >gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 247 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G H V AL NP RK+ ++ T K + R + N+ V + +DK Sbjct: 6 FLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKELDKYT 65 Query: 106 GKEAV-HQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ + H G E + P L +N + +D V DP NIG+++RSA +F DG Sbjct: 66 SKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHIDG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R PS+S ++ K+ASG +EHI +SN+ L+ + F G + +K Sbjct: 126 LIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGEKDFT 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K L+ G+EG G+R T + + + +++LN+SN+AA+ + Sbjct: 186 EIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFH 238 >gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] Length = 292 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 19/247 (7%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 T Q ++ +YG H+V AAL + R++ ++ T RL +D + I Sbjct: 37 QTEQSDDDLIYGRHSVLAALES-DRQLNRIWITN----RLHYDPRFHNLIQASKAKGAVI 91 Query: 102 DKI-------VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 D++ + A HQG+A + AP LD + + ++++ D ++DPHN+ Sbjct: 92 DEVSVQRLSQITNGANHQGVAAQVAPYNYHDLDGLIAQAKANSDEPVIVIADSISDPHNL 151 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A A C G+I +R + ++ ++K A+GALE P R+ NL+ AL+ + + GF Sbjct: 152 GAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRALETLKAEGF 211 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G S+ K L+ I L++G+EG GL TQ + + + G +LN S Sbjct: 212 WIYGTVSEGGKRLQDFNFRGAIGLVIGSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASV 271 Query: 268 AAAVALY 274 AAA+ LY Sbjct: 272 AAAINLY 278 >gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 456 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 141/269 (52%), Gaps = 23/269 (8%) Query: 25 RNHRDYKKMQSFNQKSR-----HTSQP-ENLFLYGVHTVSAAL--NNPSRKIFQLLATKN 76 R R + + F +K R H++ P + L+G H AAL P +I+ ++ Sbjct: 129 RQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALEAGRPIHRIWCTSEMRS 188 Query: 77 A--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------- 127 A +L DA V+ V + ++ G AVHQG+AL+TA + TLD Sbjct: 189 APRFMQLLRDAKSSGVL-VEEVTWARLAQMTGG-AVHQGIALQTA--AADTLDLADLIEG 244 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A++ + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A+GALE Sbjct: 245 CAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALE 304 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+P R+ NL +L+ + G++ +GL+ + + LE+ + ++ G+EG+GL T+ Sbjct: 305 HLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQGLSMLTR 364 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G+ +LN S A A+ LY Sbjct: 365 RHCDQLIRIPLRGVTPSLNASVATALCLY 393 >gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] Length = 247 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ +L N K++ L KN A A + P +T+ + G Sbjct: 11 IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LS +D + L+++LD +NDPHN G+ILR+A A Sbjct: 69 G-AVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRTADATQVT 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G D P Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDG-TPS 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 187 HKWNTAGKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240 >gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 249 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L +KN+ LD + N V+ V Q +D Sbjct: 4 KNQWIVGINAVVSSIENDAEHVCEVLVEAGSKNSRL-LDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L K+AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 AETSLYALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240 >gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] Length = 245 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 122/237 (51%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA LN ++ ++ K RL N H V+ V QT+DK Sbjct: 5 IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L LDA+ + S LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S S++ K A GA E IP IR++NL L+ + + W +G + ++ Sbjct: 124 VIVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETLYQAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae BGR1] Length = 250 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 21/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG H V+A L + + + ++L + R D F ++T + I E Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTD------F-LQTAKEAGVRLIAADET 58 Query: 110 VHQGLA-----------LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 GLA +E PL L+ LD ++ LL+VLD V DPHN+GA LR A Sbjct: 59 RLWGLAHTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVAD 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A II + + +A AK ASGA + +PYI ++NL AL+++ G IG + D Sbjct: 119 AAGAHAIIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADD 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + + +AL++GAEG+G+R T++T + +L M G +++LNVS A+ V LY Sbjct: 179 APASLYETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLY 237 >gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 249 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANL--PHPFPVKTVPPQTID 102 N +YGVH V+ +L N K++ L KN +D NL + +P +T++ Sbjct: 10 NDIVYGVHAVTESLTANTGNKLYIQDDLRGKN----VDKIKNLAAEKKVSISWMPKKTLN 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG L + LD + + L+++LD +NDPHN G+ILR+A A Sbjct: 66 DMTNG-AVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 125 TNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 185 -TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 241 >gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 249 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L A+KN+ LD + N V+ V Q +D Sbjct: 4 KNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I +K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240 >gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 242 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + +L + + + K + + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMTE 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 64 G-----AVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMY 235 >gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] Length = 242 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K + + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTE 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 64 G-----AVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 247 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 14/222 (6%) Query: 65 SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +RK+F++ +K++ D L H + VP +DK+V HQG+ ET P Sbjct: 20 NRKVFRIYISKDSNKNFQ-DEMLKLAQQHNINLDKVPLDRLDKMVPTTE-HQGIVAETEP 77 Query: 121 LLSPTLDAV-----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 LD V N+Q L++LDH+ DP N GAI+R+A A DG+I KR S Sbjct: 78 FKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVGVDGVIIPKRRSVDV 137 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + K++SGA EH+P I++SNL + K+ +G D + + +E N +AL+ Sbjct: 138 NPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDRGIFEENYNIPLALV 197 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G E G+ P ++ +A++ M G + +LN S A AV LY Sbjct: 198 VGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLY 239 >gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] Length = 247 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 20/238 (8%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTIDK 103 +YGVH V A L + R++ +L + AL L A + V + +D+ Sbjct: 7 IYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIA----VGQRERRELDE 62 Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E VHQG+ E +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 63 WA--EGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S + +A + K A GA E +P + ++NL L+K+ G T+G + + Sbjct: 121 AGAQAVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEV 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 181 EQELYGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae TIGR4] gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae TIGR4] gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] Length = 242 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K +++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +I + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 60 EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] Length = 248 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 17/243 (6%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102 N +YGVH V+ +LN N K++ + L KN +D NL + P +T+ Sbjct: 10 NDMVYGVHAVTESLNANTGNKLYIQEDLRGKN----VDTIKNLARDKKVSISWAPKKTLS 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + AVHQG L + L+ + + L++VLD + DPHN G+ILR+A A Sbjct: 66 DMT-EGAVHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G++ K + + V+AK+++GA+EH+P R++NL+ L K+ GF G D Sbjct: 125 TKVCGVVIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+++ + K+ LI+G+EGKG+ ++ M + M G +++LN AAAV +Y Sbjct: 185 -TPVQKWNTSGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEV 243 Query: 277 QNH 279 H Sbjct: 244 FRH 246 >gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 242 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K +++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +I + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 60 EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 248 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ +L+ N K++ + L KN + RL + + + P +T+ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVS----ISWTPKKTLS 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A A Sbjct: 66 EMT-EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + Sbjct: 125 TNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 185 -TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241 >gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 242 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K +++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +I + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 60 EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] Length = 247 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT--IDKIVG 106 +YG H V++ + NP + L ++ R+ L V+ +P + +D + G Sbjct: 6 LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A LS L+ + LL+VLD + DPHN+GA LRSA AF Sbjct: 66 G-ARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K A GA E +PYI ++NL L+++ G +G + ++K+ L Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A++LGAEG+GLR T ET + + M G +++LNVS + + L+ Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLF 237 >gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974M2] Length = 251 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] Length = 233 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 86/144 (59%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++VLD V DP N GAI+RSA F DGII R S + + KS++GA+EH+ Sbjct: 84 KEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSSTGAIEHVDI 143 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++++N++D + K+ +G+ G +D + +E +K L+LG+EG G+R K +E Sbjct: 144 VKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYPEKACLVLGSEGNGMRKKVKEHCD 203 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + +H+ G I +LNVS A + L Sbjct: 204 KIVKIHLKGQINSLNVSVAGGIIL 227 >gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] Length = 253 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + L KN L ++ + + +++ +I Sbjct: 15 NDIVYGVHAVTEALRANTGNKLYLQEDLRGKN-LEKVK-ELATEKKVSISWTSKKSLSEI 72 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 73 T-EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATN 131 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 132 VSGVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 190 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 191 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246 >gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] Length = 370 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 139/272 (51%), Gaps = 17/272 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLA 73 +DS + R R + + KS + L+G H AAL P +I+ Sbjct: 40 QDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALEAGRPIHRIWCTSE 99 Query: 74 TKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---- 127 ++A +L DA V+ V + ++ G AVHQG+AL+TA + TLD Sbjct: 100 MRSAPRFMQLLRDAKASGVL-VEEVTWARLAQMTGG-AVHQGIALQTAA--AETLDLSDL 155 Query: 128 -----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 A++ + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A+G Sbjct: 156 IEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAG 215 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEH+P R+ NL +L+ + G++ +GL+ + + LE+ + + ++ G+E +GL Sbjct: 216 ALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVVTGSEDQGLSM 275 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ + + + GI +LN S A A+ LY Sbjct: 276 LTRRHCDHLIRIPLRGITPSLNASVATALCLY 307 >gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] Length = 242 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 262 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ PL L LDA + L++VLD V DPHN+GA LR A ++ Sbjct: 86 HQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDPHNLGACLRVADGAGACAVVAP 145 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K ++ +A +AK ASGA E +PY+ ++NL +L +M + IG S D+ K + Sbjct: 146 KDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKERDIRVIGTSDDATKTIYDVDL 205 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEG G+R T++T + + M G +++LNVS AA + LY Sbjct: 206 RGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLY 254 >gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis MSMB43] Length = 247 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237 >gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] Length = 247 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVYETEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T+ET + ++ M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLF 237 >gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ +L N K++ L KN A A + P +T+ + G Sbjct: 11 IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + S +D + L+++LD +NDPHN G+ILR+A A Sbjct: 69 G-AVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G D P Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDG-TPS 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 187 HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240 >gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANL--PHPFPVKTVPPQTID 102 N +YGVH V+ +L N K++ L KN +D NL + P +T+ Sbjct: 10 NDIVYGVHAVTESLTANTGNKLYIQDDLRGKN----VDKIKNLAAEKKVSISWTPKKTLS 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG L + LD + + L+++LD +NDPHN G+ILR+A A Sbjct: 66 DMTNG-AVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 125 TNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 185 -TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 241 >gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 242 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EHIP R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis Bt4] gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis E264] Length = 247 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD V LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237 >gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974] gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] Length = 242 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] Length = 253 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 67 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 121 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 240 AAAILMY 246 >gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 228 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAP 120 N +R +++ T A +L + L + + T+ + ID ++ + HQG+ + Sbjct: 2 NKNRVKYEVYFTSEAERKLRSEVKL-ESYNIITIRKTREEIDLVLKGISNHQGICIRVEK 60 Query: 121 LLSPTL-DAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + P L + ++N + ++ +LD ++DP N+GAI RSA+AF DGII T S +E++ Sbjct: 61 IQPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSF 120 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 LAK+AS A++ IP+ +I N++ ++ + G+ GL +++ + +KI ILG+ Sbjct: 121 LAKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGS 180 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E KG+R T + M +++LNVSNAAA+ ++ N Sbjct: 181 ESKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223 >gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 234 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 109/192 (56%), Gaps = 5/192 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V + DKI + HQG+ +E LD + + + L++LD + DPHN+GAI Sbjct: 45 IEISFVDKRFFDKI---DINHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAI 101 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA +F DG++ +R S S ++ + K+++GA+ +I R+ NLT +++ + GF Sbjct: 102 IRSAESFGFDGVVIPERRSASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIY 161 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL+ ++ +++ K+ L++G EG G+ ++ + ++ M G + +LN S AA Sbjct: 162 GLAGEADSSIDKADLTGKVGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAG 221 Query: 271 VALY--ITQNHF 280 +++Y + QN F Sbjct: 222 ISMYELLRQNGF 233 >gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Hungary19A-6] gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 242 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 242 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ + GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 242 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + L KN + A + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAE--KKVSISWTSKKSLSEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 242 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae R6] gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family [Streptococcus pneumoniae R6] gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] Length = 253 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 67 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 121 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 240 AAAILMY 246 >gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus thermophilus ND03] Length = 247 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ +L N K++ L KN A A + P +T+ + G Sbjct: 11 IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LS +D + L+++LD +NDPHN G+ILR+A A Sbjct: 69 G-AVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G D Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDGTASH 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 188 KWNTAG-KLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLMY 240 >gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] Length = 260 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 248 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ +L+ N K++ + L KN + RL + + + P +T+ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVS----ISWTPKKTLS 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A A Sbjct: 66 EMT-EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + Sbjct: 125 TNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 185 -TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241 >gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] Length = 253 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 67 KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 121 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGF 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 240 AAAILMY 246 >gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] Length = 252 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 14/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103 E+L++YG+H V +AL+N ++ ++L K +A + D + V D+ Sbjct: 3 ESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFDR 62 Query: 104 IVGKEAV----HQG-LALETA-PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILR 152 + K+ + HQG LAL TA P+L LD + LL+VLD V DPHNIGA LR Sbjct: 63 TLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACLR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + A G+I K S + +A K ASGA + +P+ ++NL L+++ G G Sbjct: 123 TCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + Q IAL++GAEGKGLR T+E + H+ M G + +LNVS AA V Sbjct: 183 AGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGVC 242 Query: 273 LY 274 L+ Sbjct: 243 LF 244 >gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] Length = 242 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 117/213 (54%), Gaps = 5/213 (2%) Query: 64 PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P+ +F + TKN RL N+ P+ V Q +D++ G +HQG+ L+ Sbjct: 73 PAVAMFVAIGTKND-QRLVEAVNIAASRSIPIVEVSKQKLDEMTGN-GLHQGIGLQIPEY 130 Query: 122 LSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L D + + +++ LD++ DP N+GA++RS AF DG++ +R S S +AV +S+ Sbjct: 131 HYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSS 190 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P +++N+T AL++ G+Q IGL + + + + +++G+EGKGL Sbjct: 191 AGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAGGEHTHDSYDGTGPVVIVVGSEGKGL 250 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +ET ++ + M G +++LN S AA V L Sbjct: 251 SRLVKETCDTIVTIPMEGWVESLNASVAAGVVL 283 >gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis TXDOH] Length = 247 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237 >gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] Length = 242 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ L KN + L + + + K + D Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 64 G-----AVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K S + V+AK+A+GA+EH+P R++NL+ L K+ GF G + Sbjct: 119 TNVSGVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + KIALI+G EG+G+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTSGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMY 235 >gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] Length = 247 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 64 AHTERHQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237 >gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +L+G++ V AL RK+ L RL+ A H VK + +DK+VG Sbjct: 4 YLFGLNAVFEALGQ-GRKVVALYVEAQRNPRLEEIVAQATERH-VAVKQCERRQLDKMVG 61 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ A + L + ++ + ++LD + DPHN GA++RSA A C G Sbjct: 62 -DVRHQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + ++ K+A+G L ++ +++NL A++++ G GL+ + + L Sbjct: 121 VIFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLF 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 + + IAL+ G+EG+G+RP ++ + + MPG +++LNVS A +AL+ + +NH Sbjct: 181 EAPLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240 >gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 242 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K + + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMTE 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A Sbjct: 64 G-----AVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 253 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + S I ++L AT+ D+ A + + + G Sbjct: 11 VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L L+ LDA+ LL+VLD V DPHN+GA LR A A Sbjct: 71 THR-HQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHA 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + ++ AK ASGA E +PYI ++NL L+++ G IG + D+++ L Sbjct: 130 VIAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLY 189 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T+ET + H+ M G + +LNVS A+ + L+ Sbjct: 190 DIALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLF 242 >gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23] gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa M23] gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 249 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L A+KN+ LD + N V+ V Q +D Sbjct: 4 KNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240 >gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] Length = 249 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L A+KN+ LD + N V+ V Q +D Sbjct: 4 KNQWIVGINAVVSSIENDAEHVREVLLEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240 >gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] Length = 234 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 2/158 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 LE L L R+ +++VLD + DP N GAI+RSA F DGII R S S + Sbjct: 72 LELNEFLEKVLAKQRS--IVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRNSVSVTET 129 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + KS++GA+EH+ I+++N++D++ K+ +G+ G +D + E +K+ L+LG+ Sbjct: 130 VVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFPEKLCLVLGS 189 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EGKG+R K +E + ++ M G I +LNVS A + L Sbjct: 190 EGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILL 227 >gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii SP-6] Length = 244 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%) Query: 99 QTIDKIVGKEA---VHQGLALET---APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +T DK +G+ A HQG+ AP+ L LDAV L++VLD V DPHN+GA Sbjct: 54 ETDDKRLGQMAGNTRHQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR A +I K ++ +A +AK ASGA E +PY ++NL L ++ + I Sbjct: 114 LRVADGAGAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVI 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G S D+ + + + +A++LGAEG G+R T++T + H+ M G +++LNVS A+A Sbjct: 174 GTSEDATQSIYDIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASA 233 Query: 271 VALY 274 V LY Sbjct: 234 VCLY 237 >gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis EO147] gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis C6786] Length = 247 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLY 237 >gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 246 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105 +LYG+H + + L ++ ++L K RL N F + Q DK+ Sbjct: 6 WLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALDDKVS 65 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 G++ HQG+ P L LD + S+ L++VLD V DPHN+GA LR+A Sbjct: 66 GEQ--HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ K Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETDKT 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 184 LYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLY 238 >gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 252 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ LA + R+ L V + + V E Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A + Sbjct: 66 VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ + + Sbjct: 126 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSIYD 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q++ I LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLF 237 >gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria AMMD] gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MC40-6] Length = 247 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHTAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 64 AHTERHQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237 >gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 249 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT--IDK 103 +N ++G H V++ L + + + +L R D + V+ + +DK Sbjct: 2 KNKVIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDK 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ AP+ L LDA+ + LL+VLD + DPHN+GA LR A + Sbjct: 62 MVGTRR-HQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A + K ASGA E +PYI ++NL L+++ +G + D+++ Sbjct: 121 AHAVIAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEE 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + +A ++G+EG+G+R T+E + + M G +++LN+S A+ + LY Sbjct: 181 SLYEPDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLY 236 >gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 N +YGVH V+ AL N K++ + L KN ALA + P + Sbjct: 4 NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ ++ + AVHQG L A L A+ + LL++LD + DPHN+G+ILR+ Sbjct: 57 TLQEMT-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ + Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234 Query: 274 Y 274 Y Sbjct: 235 Y 235 >gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150] gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150] Length = 250 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 21/240 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-TIDKIVG-- 106 ++YG+H VSA L NP R TK LD + N K + I+K+ Sbjct: 5 YVYGLHAVSALLANPHRM------TKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHK 58 Query: 107 -----KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ + L L L++ ++ L+++LD + DPHN+GA LR+A Sbjct: 59 MNQRFADFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D ++ K S S + V++K A GA E +P +R++NL +++ + G G + Sbjct: 119 DATGVDFVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAG 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q IA++LGAEG+GLR T+E S+ L M G + +LNVS A V+LY Sbjct: 179 EATGTLYQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLY 238 >gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu] Length = 247 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 64 AHTERHQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YDTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas fluorescens Pf-5] Length = 254 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 14/235 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ LA + R+ +L + V + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +Q++ I +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YDQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341] gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341] Length = 271 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 18/267 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALNNP---SRKIFQLLAT 74 +++N++ YK+++ N++ + Q + + G + + A+ + ++ +FQ Sbjct: 1 MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132 K L + AN + VP + +D + HQG+ AP LD V N+ Sbjct: 61 KGRLKSIFAIAN-EKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLE 117 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 IR+SNLTDA++K+ GF G + + +I D +A+++G EG+G+ Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264 >gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] Length = 242 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 13/237 (5%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N +YGVH V+ AL N K++ L KN D A+ + P +T+ + Sbjct: 3 KNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAAD--KKVSISWTPKKTLQE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + AVHQG L + L+ + +++ LL++LD + DPHN+G+ILR+A A Sbjct: 61 MT-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 120 QVAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNG- 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 TPSHKWNTSGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMY 235 >gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424] gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424] Length = 270 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 17/266 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNP---SRKIFQLLATK 75 +++N++ YK+++S N++ ++ E + G + + A+ + ++ +FQ K Sbjct: 1 MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSGREINKILFQEGIEK 60 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---- 131 L + AN + VP + +D + HQG+ AP LD V N Sbjct: 61 GRLKAIFSIAN-EKKIVCQEVPKRKLDNSTTER--HQGVIAFVAPYNYFELDEVLNKIEI 117 Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L++LDH+ DPHN+GAI+RSA A G+I KR + S K+++GA+EH+P Sbjct: 118 NKNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPV 177 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248 IR+S+L DA++K+ GF G + + +I D + +++G EG+G+ Sbjct: 178 IRVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNEC 237 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + HL M G +++LNVS AA + +Y Sbjct: 238 DFLYHLPMLGKVQSLNVSVAAGIVMY 263 >gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 242 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + + KN + A + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAE--KKVSISWTSKKSLSEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] Length = 250 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 FLYG + V AL + K+F + K LA++ AN V VP ++K+ G Sbjct: 8 FLYGRNPVLEALRSGRDMNKVFIMEGQQKGPLAQIIAMAN-EASVQVSFVPKTKLEKMAG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ A T++ + + L ++LD + DPHN+G+ILR+A A Sbjct: 67 SEH-HQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTADAVGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR S + +AK+++GA+EHIP R++NLT L+++ G +G + + Sbjct: 126 HGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDAKESQD 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + N + +++G+EGKG+ +E+ + HL M G + +LN S AAA+ LY Sbjct: 186 YRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLY 240 >gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] Length = 242 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + LD + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + KIALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] Length = 246 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 128/237 (54%), Gaps = 17/237 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG+H V AL R I +LL ++RL + +P V+ P +D++ Sbjct: 1 MIYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAREQRVP----VRVEPRAALDRL 56 Query: 105 VGKEAVHQGL-ALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+ + A + D + ++Q LL++LD V DPHN+GAILR+A A Sbjct: 57 V-PSGHHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEAS 115 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+ +R + ++V+AK+++GA++++P R+ NL+ ++++ G L +++ Sbjct: 116 GVQGVFIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAP 175 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + +AL+ G EG G+RP ++ AH+ M G + +LNVS +AA+ LY Sbjct: 176 KAYTELDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLY 232 >gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 109/189 (57%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 V++ P +D++ G + HQG+ A + L A R S L++VLD V DPH Sbjct: 50 VRSAPRAKLDRLAGTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A G++ K + + +AK+++GA+E P R++N++ L+ + Sbjct: 109 NLGAIIRSAHALGAHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEA 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ L++D PL IAL+LG+EG+GLRP ++T A + M G + +L+V Sbjct: 169 GIWSVALAADGDAPLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSV 228 Query: 266 SNAAAVALY 274 S +AAVALY Sbjct: 229 SASAAVALY 237 >gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 248 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ + + V + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLF 238 >gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710b] gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] Length = 260 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 82 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 141 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 142 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 201 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 202 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 250 >gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] Length = 260 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 82 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 141 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 142 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 201 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 202 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 250 >gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 275 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 15/260 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLD 82 R+N K+ N + T + F++G H V AL K+F +A ++D Sbjct: 11 RQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRGNKLF--MAEDARGEKID 68 Query: 83 W--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLM 136 +A PVK VP Q +D++ + VHQ + L P +LD + + + Sbjct: 69 GLKEAARAQSVPVKWVPKQKLDQM-SNQGVHQSVILAITPYEYLSLDELLAQTKEQSFYL 127 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EHIP R++NL+ Sbjct: 128 ILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPIARVTNLS 187 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETATSMAHL 254 A+Q++ GF G K + + N + A LI+G EG+G+ ++ M + Sbjct: 188 QAIQQLKQAGFWIFGTDM---KGTDYRLWNAQGAAGLIIGNEGRGMSEGLKKDVDEMLTI 244 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN S AA + +Y Sbjct: 245 PMTGHVQSLNASVAAGLLMY 264 >gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus Ueda107] Length = 249 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG+H V A L + +++ ++ + L ++ A L + V +D +V Sbjct: 5 LVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAEL-NQIHCNLVSRNKLDDMV 63 Query: 106 GKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +E HQG+ P L L+ + L+VLD V DPHN+GA +RSA A Sbjct: 64 SEEN-HQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + V K A GA E +P+I ++NL L+K+ G G + ++ + Sbjct: 123 VHAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IA+++GAEG GLR TQET + H+ M G + +LNVS A V L+ Sbjct: 183 SLYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLF 238 >gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383] gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383] Length = 247 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHTAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 64 AHTERHQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri A1501] gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H V A L + +++ Q+ LA R+ L V + + E Sbjct: 7 IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 127 IVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSLYA 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++GAEG+G+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans ATCC 17616] gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 64 AHTERHQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18] Length = 249 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 +YG++ AL SRKIF+L +A +A RL+ L PV+ ++++ G Sbjct: 6 IIYGLNPAMEALRG-SRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLNRLCG 64 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E HQG+AL+ P LD V + L++VLD V DPHN+GA++RSA + Sbjct: 65 TEH-HQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAACAGAN 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K + +AV+ K+++GA E + +++N++ AL+ + GF G +K L Sbjct: 124 AVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSAKHTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ +AL++G EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 184 YQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLF 237 >gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] Length = 231 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 53 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 112 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 113 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 172 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 173 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 221 >gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei DM98] gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 14] gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 91] gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 9] gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei B7210] gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 7894] gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei NCTC 13177] gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 112] gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei BCC215] gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 23344] gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei SAVP1] gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10229] gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 668] gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106a] gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10247] gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237 >gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL L+ LD + LL+VLD V DPHN+GA LR A A II Sbjct: 69 HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLY 237 >gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 255 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 8/187 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ---LLMVLDHVNDPHNI 147 V+ VP +D++ + HQG+ + AP LD V R++ L++VLD + DPHN Sbjct: 65 VQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHNF 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G+ Sbjct: 122 GAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAGY 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 182 WIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNASV 241 Query: 268 AAAVALY 274 AA V LY Sbjct: 242 AAGVLLY 248 >gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU 1054] gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia HI2424] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD + LL+VLD V DPHN+GA LR A + Sbjct: 64 AHTERHQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] Length = 335 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 143/276 (51%), Gaps = 19/276 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL------FLYGVHTVSAALNNPSRKIF 69 KDS ++ L+R +K + K+ +Q N +++G H+V AL++ R I Sbjct: 57 KDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEALSSE-RAIN 115 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPT 125 ++ T + D L K V + + + A HQG+AL+ A + + Sbjct: 116 RIWCTSEIFSS-DKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASHQGIALQLACSRTIS 174 Query: 126 LDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+ + + + +++ LD + DPHN+GAI+RSA AF C GII +R S + +AK Sbjct: 175 LEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAK 234 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GALEH+ R+ NL AL+++ GF +GLS D + + ++ + +I+G+E K Sbjct: 235 VAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEK 294 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ TQ+ + + + G +LN S AAA++L+ Sbjct: 295 GISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLF 330 >gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] Length = 232 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 92/147 (62%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + +++ +++LD + DP N GAI+RS F GII R + + + KS++GA+EH Sbjct: 81 ELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNVKVTETVVKSSTGAIEH 140 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + ++++N+ D+++K+ +G+ G ++ +K +E K AL+LG+EGKG+R + +E Sbjct: 141 VDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPKKKALVLGSEGKGMRKRVRE 200 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 + S+ +H+ G I +LNVS AA + L Sbjct: 201 SCDSILKIHLKGEINSLNVSVAAGILL 227 >gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] Length = 242 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ AL N K++ + LAT+ ++ + W + Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVS-ISWTSK------- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 K++ T + AVHQG L + L+ + + LL++LD + DPHN+ Sbjct: 56 KSLSEMT------EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNL 109 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGF 169 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T G + P + + K+ALI+G EGKG+ ++ M + M G +++LN S Sbjct: 170 WTFGTDMNG-TPCHKWNTSGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 229 AAAILMY 235 >gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] Length = 289 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76 + ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 18 FEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 77 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129 + PVK VP Q ++ + VHQG+ L P +LD + Sbjct: 78 EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 136 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+EH+P Sbjct: 137 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 196 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL A+Q++ GF G + K IAL++G EGKG+ P ++ Sbjct: 197 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 255 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN S AA + +Y Sbjct: 256 ELLTIPMTGHVQSLNASVAAGLLMY 280 >gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] Length = 242 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 N +YGVH V+ AL N K++ + L KN ALA + P + Sbjct: 4 NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ ++ + AVHQG L A L A+ + LL++LD + DPHN+G+I+R+ Sbjct: 57 TLQEMT-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ + Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234 Query: 274 Y 274 Y Sbjct: 235 Y 235 >gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] Length = 286 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80 ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 19 KQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 + PVK VP Q ++ + VHQG+ L P +LD + + Sbjct: 79 ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDL 137 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+EH+P R++ Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARVT 197 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A+Q++ GF G + K IAL++G EGKG+ P ++ + Sbjct: 198 NLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN S AA + +Y Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277 >gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] Length = 247 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ L L+ LD + S LL+VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G S ++ K L + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLYETEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237 >gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1] Length = 248 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ L+ + RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238 >gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] Length = 292 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 19/244 (7%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q E+ +YG H+V AAL + R++ ++ T RL +D + ID++ Sbjct: 41 QSEDDLIYGRHSVLAALES-DRQLNRIWITN----RLHYDPRFHNLIQASKAKGAVIDEV 95 Query: 105 -------VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAI 150 + A HQG+A + AP LD A + ++++ D + DPHN+GAI Sbjct: 96 SLQRLSQITNGANHQGVAAQVAPYTYHELDELITQAKANSDEPVIVIADGIADPHNLGAI 155 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A C G+I +R + ++ ++K ++GALE P R+ NL+ AL+ + + GF Sbjct: 156 IRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFPVARVVNLSRALETLKAEGFWIY 215 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G ++ K L+ I L++G+EG GL TQ + + + G +LN S AAA Sbjct: 216 GTVAEGGKRLQDFDFRGAIGLVIGSEGSGLSLLTQRCCDELISIPLEGKTPSLNASVAAA 275 Query: 271 VALY 274 + LY Sbjct: 276 INLY 279 >gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO] gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] Length = 286 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76 + ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 15 FEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 74 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129 + PVK VP Q ++ + VHQG+ L P +LD + Sbjct: 75 EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+EH+P Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL A+Q++ GF G + K IAL++G EGKG+ P ++ Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN S AA + +Y Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277 >gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 257 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 71 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGF 184 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 244 AAAILMY 250 >gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16] gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16] Length = 247 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKT--VPPQTIDK 103 +N L G H V+A L ++ + + + + R+ L V+ V + + Sbjct: 3 KNKLLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRG 62 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + G + HQG+ + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 63 MAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K Sbjct: 122 AHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 182 SLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLY 237 >gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 248 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 62 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGF 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 235 AAAILMY 241 >gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida KT2440] Length = 248 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ L+ + RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238 >gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] Length = 256 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145 V+ P +D++ G + HQG+ A L D + +Q LL+VLD V DPH Sbjct: 50 VRGAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A G++ + + + +AK+++GA+E P R++N+ L+++ Sbjct: 109 NLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ L++D ++PL + AL+LG+EG+G+RP + T A + M G + +L+V Sbjct: 169 GIWSVALAADGERPLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSV 228 Query: 266 SNAAAVALY 274 S +AAVALY Sbjct: 229 SASAAVALY 237 >gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] Length = 271 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 18/267 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQ-PE----NLFLYGVHTVSAALNNP---SRKIFQLLAT 74 +++N++ YK+++ N++ + Q PE + G + + A+ + ++ +FQ Sbjct: 1 MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132 K L + AN + VP + +D + HQG+ AP LD V N+ Sbjct: 61 KGRLKSIFAIAN-EKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLE 117 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247 IR+SNLTDA++K+ GF G + + +I D +A+++G EG+G+ Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264 >gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] Length = 247 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96 N +++G+H A L +P+R ++F +LL N L +L F ++ + Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLG--------FKIQEL 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAI 150 P +T+D K A HQG+ P L LD + ++ LL+VLD V DPHN+GA Sbjct: 55 PRKTLDD-KAKGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ Sbjct: 174 GTAGEATHDVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2] Length = 245 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 121/236 (51%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105 +LYG+H + + L ++ +++ K RL N F + Q DK+ Sbjct: 6 WLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALDDKVN 65 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 G++ HQG+ P + LD + + + LL+VLD + DPHN+GA LR+A Sbjct: 66 GEQ--HQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADGAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S S + + K A GA E IP I+++NL L+ + G +G + ++ K Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGETDKT 183 Query: 220 LEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +IK D AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 184 L-YDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLY 238 >gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] Length = 286 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76 + ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 15 FEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGRGNKLFLQEDSRG 74 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129 + PVK VP Q ++ + VHQG+ L P +LD + Sbjct: 75 EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+EH+P Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL A+Q++ GF G + K IAL++G EGKG+ P ++ Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN S AA + +Y Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277 >gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida GB-1] Length = 248 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ L+ + RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238 >gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia cenocepacia MC0-3] Length = 247 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 LYG H V+A L + + + ++L + R D H V D+ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E PL LS LD + LL+VLD V DPHN+GA LR A + Sbjct: 64 AHTERHQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured Desulfobacterium sp.] Length = 270 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 15/256 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWD 84 R++K ++ KSR + LYG+H V A+ RK++++ K + L R Sbjct: 3 RNFKSLE----KSRLEMDKSEI-LYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISK 57 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA--PLLS--PTLDAV--RNSQLLMVL 138 P P+ +V P + KI G + Q +A + + PL++ L+++ +N L++L Sbjct: 58 LAEPAKIPLISVKPDHLTKITGSD-FQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLL 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GA+ R+A+ GI+ TK S S + ++K+++GALEHI +++N+ + Sbjct: 117 DTVVDPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++M G +G+ + + P+ IAL++G+EGKG+R + + + G Sbjct: 177 IKEMKDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKG 236 Query: 259 IIKALNVSNAAAVALY 274 + +LN S A AVA+Y Sbjct: 237 EVSSLNASAAGAVAMY 252 >gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae] Length = 313 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 135/266 (50%), Gaps = 15/266 (5%) Query: 21 AKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKN 76 A+ R H YKK ++ RH + + + G + V L+ P+ ++ + TKN Sbjct: 40 AEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTKN 99 Query: 77 ALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LD 127 RL + H P+ VP +D + G +HQG+ L+ P T ++ Sbjct: 100 D-NRLSEAVQIAHSRGIPMIEVPRHEMDLMTGN-GMHQGIGLQIPPYKYTTVFDLIGRIN 157 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G + Sbjct: 158 STGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARL 217 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +N+T A+Q+ G+Q +GL + L+ + + +++G+EGKG+ ++ Sbjct: 218 PVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDN 277 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 S+ + M G +++LN S AA V L Sbjct: 278 CDSLMSIPMAGWVESLNASVAAGVVL 303 >gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 242 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 23/241 (9%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 N +YGVH V+ AL N K++ + L KN ALA + P + Sbjct: 4 NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ ++ + AVHQG L A L + + LL++LD + DPHN+G+ILR+ Sbjct: 57 TLQEMT-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ + Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234 Query: 274 Y 274 Y Sbjct: 235 Y 235 >gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 253 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL AL+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] Length = 286 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76 + ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 15 FEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 74 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129 + PVK VP Q ++ + VHQG+ L P +LD + Sbjct: 75 EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+EH+P Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL A+Q++ GF G + K IAL++G EGKG+ P ++ Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN S AA + +Y Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277 >gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 16/201 (7%) Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 K ALARL +PH V + + EA + + +ETAP++ Sbjct: 53 KEALARLA--EGVPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMV------------ 98 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRIS 193 ++LD V DPHN+GA +R+A A C +I K ++ S V+AK+A GAL +P +R+ Sbjct: 99 -LLLDQVTDPHNLGACVRTAEAAGCAAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVI 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++++ GF T+GL+ +++ + + A+++G+E KG+R +ET + H Sbjct: 158 NMKRCIEQLQQQGFWTVGLAGEAELSIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIH 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG++++LNVS A VAL+ Sbjct: 218 IPMPGVVESLNVSVATGVALF 238 >gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVG 106 ++G H V+A L + + + ++ + T R+ V+ + Q + +VG Sbjct: 1 MIFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVG 60 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 61 TRR-HQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A AK ASGA E +PYI ++NL L+ + G IG + D+++ L Sbjct: 120 VIAPKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLY 179 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ALI+G+EG+G+R T ET + H+ M G +++LNVS A+ V L+ Sbjct: 180 QGDFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLF 232 >gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus sanguinis SK408] Length = 242 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK49] Length = 242 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 TGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 247 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL LS LD + LL+VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLHDTRL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] Length = 256 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145 V+ P +D++ G + HQG+ A L D + +Q LL+VLD V DPH Sbjct: 50 VRAAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A G++ + + + +AK+++GA+E P R++N+ L+++ Sbjct: 109 NLGAIIRSAHALGSHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ L++D ++PL + AL+LG+EG+G+RP + T A + M G + +L+V Sbjct: 169 GIWSVALAADGERPLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSV 228 Query: 266 SNAAAVALY 274 S +AAVALY Sbjct: 229 SASAAVALY 237 >gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 259 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++L K N L RL V+ V Q Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 68 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+ Sbjct: 69 TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 127 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 128 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 184 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + Q IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 185 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 244 Query: 270 AVALY 274 V L+ Sbjct: 245 GVCLF 249 >gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] Length = 243 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 13/237 (5%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N +YGVH V+ AL N K++ L KN D A + P +T+ + Sbjct: 3 KNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAA--AKKVSISWSPKKTLQE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L + L D ++ ++ LL++LD + DPHN+G+ILR+A A Sbjct: 61 MT-DGAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 120 NVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG- 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 TPVHKWNTAGKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMY 235 >gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 259 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++L K N L RL V+ V Q Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 68 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+ Sbjct: 69 TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 127 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 128 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 184 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + Q IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 185 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 244 Query: 270 AVALY 274 V L+ Sbjct: 245 GVCLF 249 >gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] Length = 253 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ L KN + A + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAA--EKKVSISWTSKKSLSEM 72 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L+ + + LL++LD + DPHN+G+ILR+A A + Sbjct: 73 T-EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 131 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 132 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 190 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 191 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246 >gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas putida BIRD-1] Length = 248 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ L+ + RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++ + + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238 >gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580] gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580] Length = 249 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + R++++L +N + A+ D + + VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-GRELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLDQMVS 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + RN Q ++VLD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + ++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMY 238 >gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] Length = 247 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + L+ LD + S LL+VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++KK L + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLYETEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T +T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLF 237 >gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 247 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVG 106 +LYG+H ++A L ++I +L +A RL NL ++ + +D Sbjct: 7 WLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLDDKSK 66 Query: 107 KEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160 E+ HQG+ P L LD + + L+VLD V DPHN+GA+LRSA A D Sbjct: 67 GES-HQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAAGVD 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S S +A + K A GA + IP I+++NL L ++ +G + ++++ + Sbjct: 126 AVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEARQSV 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 186 FDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLY 239 >gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] Length = 247 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V+A L ++ + + N R D L V T+ P +++ G Sbjct: 6 LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGV-TLHPVDAERLRGMA 64 Query: 109 AV--HQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + A L LD + + LL++LD V DPHN+GA LR A Sbjct: 65 GTDRHQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLY 237 >gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] Length = 247 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL LS LD + LL+VLD V DPHN+GA LR A + +I Sbjct: 69 HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLYETKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237 >gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] Length = 244 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 LE L ++ ++++LD + DP N GAI+RSA F DGI+ R + + Sbjct: 84 LELTEFFEKVL--AKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRNNVKVTET 141 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + KS++GA+EH+ I+++N++D + K +G++ G +D + +E K+ L+LG+ Sbjct: 142 VVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYYEESYPKKVCLVLGS 201 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG G+R K +E +H+ G +LNVS A + L Sbjct: 202 EGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIIL 239 >gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] Length = 247 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNAQALDG-V 64 Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A L + A LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240 >gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 247 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++L K N L RL V+ V Q Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+ Sbjct: 57 TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + Q IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 257 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 71 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 184 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 244 AAAILMY 250 >gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 230 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 5/172 (2%) Query: 109 AVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 AVH G+ + L LD R + LM LD V DPHN+GAILRS A + DG+I Sbjct: 59 AVHNGVVADVKDYQYLELDVVLDKTRRQRFLM-LDEVQDPHNLGAILRSVEATNYDGVII 117 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +K++ + V+AK++SGA+EH+ I +SNL + K+ F +G + ++ ++ Sbjct: 118 SKKHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIP 177 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 KN + +I+G EG GLRP ++ + + M G + +LNVS A A+ LY T Sbjct: 178 KNQNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYET 229 >gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis G4] Length = 247 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +E PL LS LD ++ LL+VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G IG + ++ L Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLYDTKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237 >gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae] Length = 255 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H V A L + +++ Q+ LA R+ L + + + V E Sbjct: 7 IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMDVWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L+ LD + L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 127 IVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQELYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] Length = 245 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLECEPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ P L LD + S LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A +I K S + +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L Sbjct: 177 GEATQDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 247 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNSQALDG-V 64 Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A L + A LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240 >gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2] gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2] Length = 249 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + R++++L +N + A+ D + VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-GRELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLDQMVS 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + RN Q ++VLD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + ++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMY 238 >gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103 E+ ++G H V+A + + + ++ K+ AR + + V + +D Sbjct: 3 ESRIIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLDG 62 Query: 104 IVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + G + HQG+ A + L LD + LL+VLD V DPHN+GA LRSA AF Sbjct: 63 MAGN-SRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A + K A GA + +PYI ++NL L+++ IG+ +++ Sbjct: 122 VHAVIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAET 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +A +LGAEG+GLR T+ET + + M G +++LNVS + V LY Sbjct: 182 NLYDVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLY 237 >gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus pyogenes MGAS315] gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 248 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 62 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF Sbjct: 116 GSILRTADATNVCGVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 235 AAAILMY 241 >gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 62 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 235 AAAILMY 241 >gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 62 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 235 AAAILMY 241 >gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 19/239 (7%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPF-PVKTVPPQTI 101 N +YGVH V+ +L+ N K++ + L KN + RL + + + P KT+ T Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A Sbjct: 69 -----EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTAD 123 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A + G+I K + + V++K+++GA+EH+ R++NL+ L K+ + GF T G + Sbjct: 124 ATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMN 183 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 184 G-TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241 >gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 251 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99 T++ + F+ G H AAL + K+F K +A+A+L A H + VP Sbjct: 3 TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152 +D++ + HQG+AL A T+D A ++ + ++LD + DPHN+G+ILR Sbjct: 62 KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209 +A A GII KR S ++V+AK+++GA+EH+P R++NL LQK W F T Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFGT 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +D ++ + K +AL++G EGKG+ P ++T M + M G +++LN S AA Sbjct: 181 DMQGTDCRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236 Query: 270 AVALY 274 ++ +Y Sbjct: 237 SLLIY 241 >gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 246 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N F+YG+H V A L P R I F L ++ R + ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDD- 61 Query: 105 VGKEAVHQGLALETAP--LLSP-TLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P LL+ LD A + LL+VLD V DPHN+GA LR+A A Sbjct: 62 KAKGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P IR++NL ++ + G +G + ++ + Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLF 237 >gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 257 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93 N +YGVH V+ +L N K++ + LAT+ +A + W P Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147 KT+ T AVHQG L + +D + + L+++LD + DPHN+ Sbjct: 71 KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A + G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGF 184 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + P + N K+AL++G EGKG+ ++ M + M G +++LN S Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243 Query: 268 AAAVALY 274 AAA+ +Y Sbjct: 244 AAAILMY 250 >gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91] Length = 260 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 5/171 (2%) Query: 111 HQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A L+ L LD + L+VLD V DPHN+GA LR A AF +I Sbjct: 69 HQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAVIVP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 129 KDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLDSITL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 IA +LGAEG+G+R T+ET + + M G I++LNVS +A + L+ T Sbjct: 189 TRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFET 239 >gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330] Length = 242 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + +++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] Length = 242 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ L KN D A + +T+ ++ Sbjct: 4 NDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAA--EKKVSISWTSKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + +A+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-DGAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ AL K+ GF G + Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas entomophila L48] Length = 247 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ L+ + R+ L V+ + + E Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S S +AV+ K A GA E IP + ++NL+ L+K+ G +G + ++++ + Q Sbjct: 127 VIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEIYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238 >gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 243 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 249 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPH 145 ++ VP Q IDK+V E HQG+A + + LD + RN Q ++LD + DPH Sbjct: 52 IQFVPKQKIDKVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPH 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A A GII R S + +AK+++GA+EHIP +R++NL D L+ Sbjct: 110 NLGSIMRTADAVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDR 169 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ + +++G+EG G+ +E + HL M G + + Sbjct: 170 GLWIFGTDAKGSSDYRTMDVDM---PLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTS 226 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 227 LNASVAASILLY 238 >gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] Length = 237 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 9/199 (4%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D N+P F K KI G HQG+ +E LD +++ + LM+LD + D Sbjct: 45 DKNVPIFFEDK----DYFSKISGN---HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIED 97 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+RSA AF DGI+ ++R S ++ + K+++GA+ +I + N+ A++++ Sbjct: 98 PHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIK 157 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F GL+ ++ + Q KIAL++G EGKGL +E + + M G I +L Sbjct: 158 EENFWVYGLAGEADGDITQTDLTGKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSL 217 Query: 264 NVSNAAAVALY--ITQNHF 280 N S A+A+A+Y + QN F Sbjct: 218 NASVASAIAIYESLRQNGF 236 >gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 242 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E VHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 DGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D N+P + K KI G HQG+ +E LD +++ + LM+LD + D Sbjct: 45 DENVPIFYEDK----DYFSKISGN---HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIED 97 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+RSA AF DGII ++R S ++ + K+++GA+ +I + N+ A++++ Sbjct: 98 PHNLGAIIRSAEAFGFDGIIISERRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIK 157 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F GL+ +++ + Q KIAL++G EGKGL +E + + M G I +L Sbjct: 158 KENFWVYGLAGEAEGDITQTDLTGKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSL 217 Query: 264 NVSNAAAVALY--ITQNHF 280 N S A+A+A+Y + QN F Sbjct: 218 NASVASAIAIYESLRQNGF 236 >gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405] Length = 242 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 THKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] Length = 252 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 16/237 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V +AL + + +++ K + L+ A ++ P +D++V Sbjct: 5 IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLAR-NQGVTIERRPRTELDRLV- 62 Query: 107 KEAVHQGLALETAPLL-SPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ E P LD A ++ LL+VLD V DPHN+GA LRSA A Sbjct: 63 -DGRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S + + K A GA E +P++R++NL L + + G +G + D++ Sbjct: 122 GVTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + IAL++GAEG+G+R TQE + +L M G + +LNVS A V L+ Sbjct: 182 QSLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLF 238 >gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] Length = 270 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H VSA L+ ++I +L +N RL VK + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LLS L LL++LD V DPHN+GA LRSA AF Sbjct: 87 KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ ++ Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263 >gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1001] Length = 247 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLYETEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237 >gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] Length = 270 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H VSA L+ ++I +L +N RL VK + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LLS L LL++LD V DPHN+GA LRSA AF Sbjct: 87 KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ ++ Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 206 EIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263 >gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK115] Length = 242 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 TGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 251 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 249 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLDQMV- 64 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + A LD + RN Q ++LD + DPHN+G+I+R+A A Sbjct: 65 -EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + +A +AK+++GA+EHIP ++++NL L +M G +G + +++ Sbjct: 124 HGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] Length = 251 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99 T++ + F+ G H AAL + K+F K +A+A+L A H + VP Sbjct: 3 TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152 +D++ + HQG+AL A T+D A ++ + ++LD + DPHN+G+ILR Sbjct: 62 KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209 +A A GII KR S ++V+AK+++GA+EH+P R++NL LQK W F T Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFGT 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +D ++ + K +AL++G EGKG+ P ++T M + M G +++LN S AA Sbjct: 181 DMQGTDYRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236 Query: 270 AVALY 274 ++ +Y Sbjct: 237 SLLIY 241 >gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens DSM 3043] gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 18/256 (7%) Query: 33 MQSFNQKSRHTSQPENL-FLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH 89 M+ + ++R + PE L +YGVH V A P R+++ + A ARL+ L Sbjct: 1 MKGKSSRTR-VATPEGLDAVYGVHAVRALFERGQPPRELW--IQEGRAEARLEALVALAR 57 Query: 90 PFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------RNSQLLMVL 138 VK V +T+D V + AVHQG+ PL + + +A+ + LL++L Sbjct: 58 QAGVKCAGVARETLDG-VARGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLIL 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN GA LRSA A G+I K + +A + K A GA + P +++NL A Sbjct: 117 DGVTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARA 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + ++ + G +G + +S + L +A+++GAEGKG+R T++ +A L M G Sbjct: 177 MGRLKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAG 236 Query: 259 IIKALNVSNAAAVALY 274 + +LNVS A V L+ Sbjct: 237 SVSSLNVSVATGVCLF 252 >gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] Length = 247 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237 >gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus DSM 2379] Length = 251 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTID--KIVG 106 ++GV+ V AL R+IF L A RLD L V+ + + D ++ G Sbjct: 5 LVFGVNPVREALRG-KREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTRMCG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+AL+ AP LD + + L+VLD + DPHN+GA++R+A Sbjct: 64 SSH-HQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAACAGA 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ + + + + K+++GA+E I +++N+ +L+K+ G+ GLS ++ Sbjct: 123 SGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEADAS 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + KIAL++G EG+G+RP ++ ++ + + G + +LN S A +ALY Sbjct: 183 LYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALY 237 >gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK678] Length = 242 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 AG-AVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + RN Q ++LD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + +++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] Length = 253 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 15/245 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQT 100 +QPE F++G HT++A L + +KI L ++ R+ NL H P+ T+ Sbjct: 3 NQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKVQ 62 Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++I AVHQG+ + L L N L+VLD V DPHN+GA Sbjct: 63 CNEI-APNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLGA 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 LRSA A D +I + + +++ ++ K+A+GA E ++NL L+++ G Sbjct: 122 CLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIWC 181 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL + + +AL+LGAEGKGLR T+ + + M G + +LNVS AA Sbjct: 182 YGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVAA 241 Query: 270 AVALY 274 V L+ Sbjct: 242 GVGLF 246 >gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 247 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNSQALDG-V 64 Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A L + A LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240 >gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 246 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP----FPVKTVPPQTIDK 103 +LYG+H + A + ++ +L K R D N + H V+ +T+D Sbjct: 6 WLYGIHALEAVIEREPERLIELFVLK---GRDDKPINTIINHARKFGIAVQFCQRKTLDD 62 Query: 104 IVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + P LD + + L+VLD V DPHN+GA LR+A A Sbjct: 63 KVNGEQ-HQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q IAL++GAEGKG+R T+E + L M G + +LNVS A V LY Sbjct: 182 QSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLY 238 >gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 253 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400] gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans LB400] Length = 247 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237 >gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 245 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ P L LD + S LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A +I K S + +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L Sbjct: 177 GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] Length = 247 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + L+ LD + S L++VLD V DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237 >gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 253 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 251 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99 T++ + F+ G H AAL + K+F K +A+A+L A H + VP Sbjct: 3 TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152 +D++ + HQG+AL A T+D A ++ + ++LD + DPHN+G+ILR Sbjct: 62 KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209 +A A GII KR S ++V+AK+++GA+EH+P R++NL LQK W F T Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLFGT 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +D ++ + K +AL++G EGKG+ P ++T M + M G +++LN S AA Sbjct: 181 DMQGTDYRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236 Query: 270 AVALY 274 ++ +Y Sbjct: 237 SLLIY 241 >gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] Length = 291 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 129/261 (49%), Gaps = 22/261 (8%) Query: 31 KKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + S +S +++P+ +YG H+V AAL R++ ++ T RL +D Sbjct: 23 KPIISSRSQSNTSAEPQETDDDLIYGRHSVLAALEG-DRQLNRIWITN----RLHYDPRF 77 Query: 88 PHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPLLSPTLD-------AVRNSQ 133 + ID++ + A HQG+A + AP LD A ++ Sbjct: 78 HNLIQGSKAKGAVIDEVSLQRLSQITNGANHQGVAAQVAPYTYHELDELITQAKANSDAP 137 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++ D + DPHN+GAI+R+A A C G+I +R + ++ ++K A+GALE P R+ Sbjct: 138 VIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVV 197 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ AL+ + GF G ++ K L I L++G+EG GL TQ + Sbjct: 198 NLSRALETLKKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVS 257 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G +LN S AAA+ LY Sbjct: 258 IPLEGKTPSLNASVAAAINLY 278 >gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 249 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L N K+F + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1] gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 242 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK150] Length = 242 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251 2'-o-methyltransferase) [Cupriavidus taiwanensis LMG 19424] gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V+A L + + + + + R+ L V+ + P +++ G Sbjct: 6 LLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVR-LHPVDAERLRGMA 64 Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 65 GTDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 185 DIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLY 237 >gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] Length = 286 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80 ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 19 KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 + PVK VP Q ++ + VHQG+ L P +LD + + Sbjct: 79 ELKEIAREQAVPVKWVPKQKLETL-SNHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+E++P R++ Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A+Q++ GF G + K IAL++G EGKG+ P ++ + Sbjct: 198 NLVQAVQQLKEIGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN S AA + +Y Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277 >gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii str. Challis substr. CH1] Length = 243 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 SGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ LI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTGGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 242 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103 +N +YGVH V+ AL N K++ + ++D NL + P +T+ + Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLY--IQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A Sbjct: 61 MT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 120 NVAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG- 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] Length = 286 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80 ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 19 KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 + PVK VP Q ++ + VHQG+ L P +LD + + Sbjct: 79 ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+E++P R++ Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A+Q++ GF G + K IAL++G EGKG+ P ++ + Sbjct: 198 NLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN S AA + +Y Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277 >gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] Length = 248 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 +YG++ V AL SR+I +L +A +A RL+ L PV+ ++++ G Sbjct: 6 IIYGLNPVMEALRG-SREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLNRLCG 64 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 E HQG+AL+ P L L+ ++ ++ L++VLD V DPHN+GA++RSA + Sbjct: 65 TEH-HQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAACAGAN 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K + +AV KS++GA E I +++N++ AL+ + GF G ++ L Sbjct: 124 AVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSARHTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 184 YQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLF 237 >gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 246 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105 +LYG+H + + L ++ ++ K RL N F + Q DK+ Sbjct: 6 WLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALDDKVS 65 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 G++ HQG+ P L LD + S+ L++VLD V DPHN+GA LR+A Sbjct: 66 GEQ--HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ K Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETDKT 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277 L AL++GAEGKG+R T+ET + L M G + +L VS A V LY + Q Sbjct: 184 LYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIVRQ 243 Query: 278 NHF 280 F Sbjct: 244 RGF 246 >gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] Length = 256 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTIDKIVG 106 L G H V+A L ++ + + + R D L V+ V + + + G Sbjct: 16 LLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDAERLRGMAG 75 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 76 TDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHA 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G +G + + K L Sbjct: 135 VIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTADGTDKTLY 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 195 DVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLY 247 >gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 8/234 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +I+GAEGKG+R T+E + L M G + +LNVS A V L ++ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLCVS 240 >gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK36] gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative [Streptococcus sanguinis SK36] gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 242 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIF---QLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +N +YGVH V+ AL N K++ L K + D + P +T+ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIK---DLAAEKKVSISWTPKKTLQ 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A Sbjct: 60 EMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 119 TNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] Length = 251 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H L N S K+F + A + V+ VP +DK+V Sbjct: 8 FVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67 Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A HQGL L + LD A + + L++LD + DPHN+G+ILRSA A Sbjct: 68 -PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + + Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K K L++G EGKG+ P + + M G +++LN S A V LY N+ Sbjct: 187 RYWDTKG-KCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNN 245 >gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 252 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA AR+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L + Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q++ I I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTI--IMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 237 >gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri] Length = 244 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID-KIV 105 E +++YG++ V +L NP+ KI +L D+ L +K V ++ + Sbjct: 3 EYIYIYGINPVVESLLNPAVKINKLYLLPQGKNN-DYYLKLAKSRQLKVVFCSAVEMTTL 61 Query: 106 GKEAVHQGLALETA-----PLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + + HQ L LE L S T A++N L+VLD ++DPHN GAILR+ F+ Sbjct: 62 VQTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I + +A +AK+++GA ++P R++NLT+A++ + GF S ++K Sbjct: 122 DGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKAQ 181 Query: 220 LEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+K D I LI+G EG G+ K + A ++ G + +LNVS A+A+ +Y Sbjct: 182 NVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIY 237 >gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 247 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQT--IDKIVG 106 ++G H V+A L + + + ++ + R+ V+ +P + IVG Sbjct: 5 MIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVG 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 65 TRR-HQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K L Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + AL++G+EG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 184 EADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLY 236 >gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 255 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L K+F + AR + ++ VP Sbjct: 8 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 68 KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRS 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N KI L++G EGKG+ P + + M G +++LN S A V L Sbjct: 187 MEGDD-YRKWNANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245 Query: 274 Y 274 Y Sbjct: 246 Y 246 >gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] Length = 326 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ A + +L+ + + + +++ LD + DPHN+GAI+RSA AF C G Sbjct: 149 ASHQGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKG 208 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L Sbjct: 209 IIIPQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLS 268 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+G+E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 269 NFSEKVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLF 321 >gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] Length = 233 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 13/235 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---- 104 +F+YG +T+ A+ RKI+QL N D + + P Q +DK Sbjct: 1 MFIYGKNTIKEAIK-AKRKIYQLYLDANF-----KDNSFISFLKLSNQPYQLVDKKKLFD 54 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + K+ HQG+ + LD+ Q ++LD ++DPHN+GAILR+ A DG Sbjct: 55 LVKQKNHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDG 114 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +K++ +A ++K A GALE++ +SNL + K+ IG S++ + L Sbjct: 115 VIMSKKHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLT 174 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + N +A+I+G EG G+R ++ + + M G I +LNVS A+A+ +Y T Sbjct: 175 KIPCNQSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYAT 229 >gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK353] Length = 242 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103 +N +YGVH V+ AL N K++ + ++D NL + P +T+ + Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLY--IQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A Sbjct: 61 MT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 120 NVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG- 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp. subtilis str. 168] gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp. subtilis str. SMY] gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis] gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + +N Q ++LD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + +++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 FRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 286 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80 ++N KK NQ ++ E+ F++G H AL K+F ++ Sbjct: 19 KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 + PVK VP Q ++ + VHQG+ L P +LD + + Sbjct: 79 ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN G+ILR+A A DG+I K + + ++ K+++GA+E++P R++ Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A+Q++ GF G + K IAL++G EGKG+ P ++ + Sbjct: 198 NLIQAVQQLKEIGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN S AA + +Y Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277 >gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493] gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493] Length = 270 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H VS L+ ++I +L +N RL VK + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86 Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LLS L LL++LD V DPHN+GA LRSA AF Sbjct: 87 KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ ++ Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263 >gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 242 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 17/238 (7%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDAN--LPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ L KN D A + + K + + D Sbjct: 4 NDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEMTD 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + +A+ ++ LL++LD + DPHN+G+ILR+A A Sbjct: 64 G-----AVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 119 TNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 179 -TPSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235 >gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase Length = 250 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H VS L+ ++I +L +N RL VK + + Sbjct: 7 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66 Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LLS L LL++LD V DPHN+GA LRSA AF Sbjct: 67 KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ ++ Sbjct: 126 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 186 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 243 >gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL B-30929] gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri NRRL B-30929] Length = 266 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 19/258 (7%) Query: 33 MQSFNQKSRHTS-----QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDA 85 M++ N+ H S QPE F+ G H V AAL NP K+F K+ + Sbjct: 1 MKNDNRSQDHRSDDSQDQPEE-FVIGRHPVVAALKSENPVNKLFIQSGIKDDDNIISEIM 59 Query: 86 NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLM 136 L H + VP Q +DK+ + HQG+ L A T+D + + + Sbjct: 60 KLAHKKRLVISKVPKQKLDKLSNNQN-HQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFV 118 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD++ DPHN+G+I+R+A A GII K + +A ++K+++GA+E +P R++NL+ Sbjct: 119 ILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLS 178 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ++++ G G + K IA+I+G EGKG+ P ++ M + M Sbjct: 179 ATIKELKQRGMWVFGTDVSGTDYRRWDAKG-SIAVIIGNEGKGISPLLKKQVDEMLTIPM 237 Query: 257 PGIIKALNVSNAAAVALY 274 G I++LN S AA++ +Y Sbjct: 238 VGDIQSLNASVAASILIY 255 >gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] Length = 548 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+AL+TA P L A+ LL+ LD + DPHN+GAI+RSA A G Sbjct: 292 AVHQGIALQTASADTLDLPTLVEGCAALGEPPLLLALDGLTDPHNLGAIVRSAEALGAHG 351 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ +GL+ + L Sbjct: 352 VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAGEGDVTLA 411 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A++ G+EG+GL T+ + + + G+ +LN S A A+ LY Sbjct: 412 EADLEGPLAIVTGSEGQGLSLLTRRHCDQLIRIPLRGVTPSLNASVATAMCLY 464 >gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus capsulatus str. Bath] Length = 250 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 51 LYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGK 107 ++G+H AAL+ +P + + L RL A V+ V + +D++ Sbjct: 7 VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66 Query: 108 EAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ LE A LL TLDA L +VLDHV DPHN+GA LR+ A Sbjct: 67 RK-HQGILLELDLPGEQGEAELLD-TLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGV 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ TK S + +AK ASGA E +P R++NL L + G+ +G + ++++ Sbjct: 125 KGLVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERT 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + +++GAEG GLR T+E + + M G +++LN+S A + LY Sbjct: 185 LYELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLY 239 >gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 2/172 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGI+ ++R S Sbjct: 65 HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSA 124 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ++ + K+++GA+ +I + N+ A++++ F GL+ ++ + Q KIA Sbjct: 125 KVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLTGKIA 184 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 L++G EGKGL +E + + M G I +LN S A+A+A+Y + QN F Sbjct: 185 LVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQNGF 236 >gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] Length = 286 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 10/236 (4%) Query: 47 ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 E+ F++G H AL K+F ++ + PVK VP Q ++ + Sbjct: 44 EDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL- 102 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+ L P +LD + + + ++LD + DPHN G+ILR+A A Sbjct: 103 SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASG 162 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I K + + ++ K+++GA+E++P R++NL A+Q++ GF G Sbjct: 163 VDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIGTN 222 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K IAL++G EGKG+ P ++ + + M G +++LN S AA + +Y Sbjct: 223 FQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMY 277 >gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 331] Length = 270 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H VS L+ ++I +L +N RL VK + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LLS L LL++LD V DPHN+GA LRSA AF Sbjct: 87 KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ ++ Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263 >gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] Length = 245 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ P L LD + + LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A +I K S + +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] Length = 244 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V + L+ ++ ++ K N L RL V+ V Q Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLG--------IRVQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 +D V E VHQG+ + P L LD + + + L++LD V DPHN+GA LR+ Sbjct: 57 ALDNKVQGE-VHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D +I K S ++ K A GA E +P IR++NL ++++ +G + Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTA 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + L Q IAL++GAEG G+R T+E + + M G + +LNVS A V L Sbjct: 176 GEATESLYQVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCL 235 Query: 274 Y 274 + Sbjct: 236 F 236 >gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] Length = 250 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102 LYG+++ AL R+ F+L +++A L +L + +P V+ + I Sbjct: 5 ILYGINSAMEALRG-KRRAFELFVSRDASDRRMEKLLKLATEKGVP----VRNRDKRDIS 59 Query: 103 KIVGKEAVHQGLAL--ETAPL--LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAV 155 ++ G + HQG+AL E P LS +DA R S L++ LD V DPHN+GA++RSA Sbjct: 60 RLCGTDH-HQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAA 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I K + +A + KSA+GA E IP +++NL AL ++ GF G + Sbjct: 119 CAGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADS 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + + + +++G+EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 179 AASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILF 237 >gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] Length = 245 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105 +YG+H V A L N ++I ++ K R + H + + Q ++ Sbjct: 4 IIYGIHAVKALLENSPQRIKEVYILKGREDRRLMP--IVHEIEAQGIVVQVANRQWMDAQ 61 Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+ P P L S L+VLD V DPHN+GA LRSA A Sbjct: 62 TEGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A + K A GA E+IP IR++NL L+ + + +G + ++ Sbjct: 122 HAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q + IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC 7002] Length = 388 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+A++TAP L A S ++++ D + DPHN+GAI+R+A A G Sbjct: 197 GVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQG 256 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R + ++ + K A+GALEH P R+ NL+ A++++ GF G ++ + K L Sbjct: 257 MIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKALH 316 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 I L++G+EG+GL TQ+ + + M G +LN S AAA+ALY Sbjct: 317 NIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALY 369 >gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter aphrophilus NJ8700] Length = 245 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A + + ++ ++LA K N + RL V+ + Q Sbjct: 5 IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLG--------ISVQFLNRQ 56 Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 T+DK E VHQG+ + + P L+ LD + Q LL+VLD V DPHN+GA LR+ Sbjct: 57 TLDKKAEGE-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A + +I TK S ++ K A GA E++P IR++NL LQK H+ W Sbjct: 116 ADAAGVNAVIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72] Length = 242 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++N++ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 242 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] Length = 249 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 11/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ +I L ++ R + L V + +D +V Sbjct: 7 YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLV-PG 65 Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ T L LD ++ LL++LD V DPHN+GA LR+A A G Sbjct: 66 VRHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K ASGA E +P++R++NL ++K+ G +G L Sbjct: 126 VIAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LGAE +GLR T E + + M G + +LNVS AA V L+ Q Sbjct: 186 NTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQ 243 >gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 245 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 16/239 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV 105 N ++YG+H V A L+ + + K R D D LP + V V Q + + Sbjct: 3 NEYIYGIHAVKAVLSREPERFIEAFVLK---GRQD-DRLLPILNELNVCGVSIQQMTRKT 58 Query: 106 GKE----AVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 E A HQG+ P L LD A S LL+VLD V DPHN+GA LR+A Sbjct: 59 LDEKASGANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNAD 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S + +A ++K A GA E +P +R++NL ++ + G +G + + Sbjct: 119 AAGVAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGE 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 179 ATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLF 237 >gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 255 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L K+F + AR + ++ VP Sbjct: 8 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + LL++LD++ DPHN+G+ILRS Sbjct: 68 KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 187 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245 Query: 274 Y 274 Y Sbjct: 246 Y 246 >gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis JLW8] Length = 250 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 10/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L S + ++L ++ + AR+ N+ V+T V +D + G Sbjct: 6 ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P+ + + S L ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G +G + DS Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L N IAL+LGAEG G+R T ET ++ + M G +++LNVS A+ + LY Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLY 240 >gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto BEST195] Length = 249 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + +N Q ++LD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + +++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 249 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L K+F + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + LL++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] Length = 281 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 31/279 (11%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ----------PENLFLYGVHTVSAAL--NNPSRKIF--Q 70 R+ + K Q+ +K T+ P+ ++G H V L N K+F + Sbjct: 7 RSRKSTSKRQTHKKKYDETTDKKIENIPDASPQEEIIFGKHAVMETLKKNKGINKLFYQK 66 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 LA + ++ N H + VP +D++ + A HQGL L P T++ Sbjct: 67 GLADSKISSIIELVKN--HGGIFQEVPKSKLDELT-QGANHQGLVLTVPPFDYQTIEGCL 123 Query: 128 AVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 A+ S+ L++LD + DPHN+G+ILR+A AF GII KR + + ++AK+++GA Sbjct: 124 ALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTGIVAKTSTGA 183 Query: 184 LEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +EH+P +R++N+ + LQ W F T D ++ Q +A+++G EG+G+ Sbjct: 184 IEHVPVVRVANIAQTIELLQNQGIWVFATDMAGEDVRQWNSQ----GPLAIVIGNEGQGV 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 P ++ A + + M G +++LN S AA V +Y H Sbjct: 240 SPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARH 278 >gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 245 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+H V A + ++ +L K RL A L F V+ P K++ + Sbjct: 5 MVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVR--PQLAARKVLDDK 62 Query: 109 AV---HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P L LD V ++ L+VLD V DPHN+GA LRSA A Sbjct: 63 AESTQHQGVVARCKPEPVKGEHELDQLLDGV-DTPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K S S ++ K A GA E IP +++NL L+ + G +G + ++ Sbjct: 122 VHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +A+ +GAEGKGLR T+E + + M G + +LNVS A + L+ Sbjct: 182 TVYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLF 237 >gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 238 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 90/146 (61%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R+ +L++LD + DP N GA++RSA F DGI+ +R S + + K+++GA+E++ Sbjct: 83 AGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P I+++NL++A++K+ + G + +++ ++E K+ LILG EG GLR K +E Sbjct: 143 PIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSCQEEQYPKKVVLILGNEGTGLRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A + L Sbjct: 203 CDKLIKIQMRGKINSLNVSVAGGILL 228 >gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] Length = 249 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + +N Q ++LD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + +++ Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%) Query: 51 LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 +YGVH V A L N+P + LA++N + + Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +D V E VHQG+ + +P +L LD LL+VLD V DPHN+ Sbjct: 54 QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNL 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I K S + + + K A GA E IP + ++NL L+K+ G Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +++ L Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231 Query: 268 AAAVALY 274 A V L+ Sbjct: 232 ATGVCLF 238 >gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42] gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLDQMV- 64 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + A LD + RN Q ++LD + DPHN+G+I+R+A A Sbjct: 65 -EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ KR + ++ +AK+++GA+EHIP ++++NL L +M G +G + +++ Sbjct: 124 HGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDASARED 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 184 YRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238 >gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617] Length = 245 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L+ +P R ++F L ++ + A ++ Q +D Sbjct: 4 IVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ P P L A ++ L++LD V DPHN+GA +RSA A Sbjct: 63 EGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II K S + +A K ASGA EHIP +R++NL ++ + +G + ++ L Sbjct: 123 AIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 YQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato str. DC3000] gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%) Query: 51 LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 +YGVH V A L N+P + LA++N + + Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +D V E VHQG+ + +P +L LD LL+VLD V DPHN+ Sbjct: 54 QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I K S + + + K A GA E IP + ++NL L+K+ G Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +++ L Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231 Query: 268 AAAVALY 274 A V L+ Sbjct: 232 ATGVCLF 238 >gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] Length = 253 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%) Query: 51 LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 +YGVH V A L N+P + LA++N + + Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +D V E VHQG+ + +P +L LD LL+VLD V DPHN+ Sbjct: 54 QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I K S + + + K A GA E IP + ++NL L+K+ G Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +++ L Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231 Query: 268 AAAVALY 274 A V L+ Sbjct: 232 ATGVCLF 238 >gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] Length = 245 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 37/247 (14%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A ++N ++ ++LA K N + RL V+ + Q Sbjct: 5 IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAIL 151 T+DK E VHQG+ L P L+ RN LL+VLD V DPHN+GA L Sbjct: 57 TLDKKAEGE-VHQGIIARVHSL--PELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACL 113 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGF 207 R+A A +I K S ++ K A GA E++P IR++NL L+ + W Sbjct: 114 RTADAAGVSAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVW-- 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + ++ + L Q +AL++GAEG+G+R T+E + + M G + +LNVS Sbjct: 172 -VVGTAGEATETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSV 230 Query: 268 AAAVALY 274 A V L+ Sbjct: 231 ATGVCLF 237 >gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145 V+ P +D++ G + HQG+ A L D + +Q LL+VLD V DPH Sbjct: 50 VRAAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A G++ + + + +AK+++GA+E P R++N+ L+++ Sbjct: 109 NLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ ++D ++ L + AL+LG+EG+GLRP + T A + M G + +L+V Sbjct: 169 GIWSVAFAADGERALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSV 228 Query: 266 SNAAAVALY 274 S +AAVALY Sbjct: 229 SASAAVALY 237 >gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 253 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%) Query: 51 LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 +YGVH V A L N+P + LA++N + + Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +D V E VHQG+ + +P +L LD LL+VLD V DPHN+ Sbjct: 54 QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I K S + + + K A GA E IP + ++NL L+K+ G Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +++ L Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231 Query: 268 AAAVALY 274 A V L+ Sbjct: 232 ATGVCLF 238 >gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708] Length = 323 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 31/299 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENL 49 +N+ + K + +K H+ + +SF+ K R + Q E+ Sbjct: 8 INITGETKRVQPIKIKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESD 67 Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101 +YG H V +AL N R + +L T ARL +D H + V P+ + Sbjct: 68 LIYGRHPVLSALEN-QRGLNRLWIT----ARLRYDPRFHHLILQAKDNGTVIDEVEPKRL 122 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAV 155 D+I A HQG+A + AP L D + ++ +++V D + DPHN+GAI+R+A Sbjct: 123 DQIT-DGANHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAE 181 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ +R + ++ + K A+GALE+ P R+ NL+ AL+++ G+ G ++ Sbjct: 182 AIGSQGLVIPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAA 241 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +P+ + L++G+EG GL TQ + + + + G +LN S AA +ALY Sbjct: 242 GSEPIHTVKFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALY 300 >gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. CC9311] Length = 589 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ L+TA + L+ A+ + LL+ LD + DPHN+GAI+RSA A G Sbjct: 313 AVHQGIVLQTAAAETFDLEDLVKGCSALDEAPLLLALDGLTDPHNLGAIVRSAEALGAHG 372 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL +L+ + S G++ IGL+ + LE Sbjct: 373 VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKSSGYRVIGLAEEGDLTLE 432 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + ++ G+EG+GL T+ + + + G+ +LN S A A+ LY Sbjct: 433 EVDLDGPLVIVTGSEGQGLSMLTRRHCDQLIRIPLRGVTPSLNASVATALCLY 485 >gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 251 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H L N S K+F + A + V+ VP +DK+V Sbjct: 8 FVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67 Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A HQGL L + LD A + + L++LD + DPHN+G+ILRSA A Sbjct: 68 -PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + + Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 187 RYWDAKG-KCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 240 >gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] Length = 249 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 +YG++ V AL SR+I +L +A ++ RL+ L PV+ ++++ G Sbjct: 6 IIYGLNPVMEALRG-SREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLNRLCG 64 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E HQG+AL+ P LD V L++VLD V DPHN+GA++RSA Sbjct: 65 TEH-HQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAACAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K + +AV KS++GA E I +++N++ AL+ + GF G ++ L Sbjct: 124 AVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSARSTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 184 YQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLF 237 >gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] Length = 249 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 107/189 (56%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 ++ VP + +D++V + HQG+ + A LD + RN Q ++LD + DPH Sbjct: 52 IQYVPRKKLDQMVTGQ--HQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPH 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GI+ KR + + +AK+++GA+EHIP +++NL+ AL +M Sbjct: 110 NLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKER 169 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + +K+ Q +AL++G+EGKG+ +E + L M G + +LN Sbjct: 170 GIWVAGTDASAKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNA 229 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 230 SVAASLLMY 238 >gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR] gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 248 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 11/238 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTIDK 103 + + ++G+H V A L N ++ +L +K D N H V+ VP Q ++K Sbjct: 3 QKVTVFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALEK 62 Query: 104 IVGKEAVHQGLA--LETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ +++ P L+ L+ + + L ++LD V DPHN+GA LR+A A Sbjct: 63 -RAEGGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K S + + K ASGA E++P + ++NL AL+ + G G + ++ Sbjct: 122 AGVTGVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++GAEGKG+R T+ET + + + G + +LNVS A+ V L+ Sbjct: 182 TQSVYDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLF 239 >gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] Length = 245 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+++V AL R +A+ ++ RL+ +L PV+ + I ++ G Sbjct: 5 IIYGLNSVMEALRGKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISRLCGT 64 Query: 108 EAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+AL T L + R++ LL+VLD V DPHN+GA++RSA G Sbjct: 65 DH-HQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACAGAQG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K+++GA+E I ++N+ L ++ + GF G +S + Sbjct: 124 VIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESPISIF 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +AL++G+EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 184 EQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLF 236 >gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] Length = 326 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ A + +L+ + + + +++ LD + DPHN+GAI+RSA AF C G Sbjct: 149 ASHQGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKG 208 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L Sbjct: 209 IIIPQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLS 268 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+G+E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 269 NFSEIVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLF 321 >gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100 N F+YG+H V A L + + K R D D +P ++ + +T Sbjct: 3 NEFIYGIHAVKAVLAKEPERFVEAFVLKG---RQD-DRLMPILNELQMCGVSIQQMTRKT 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D + A HQG+ + P L LD A ++ LL+VLD V DPHN+GA LR+A Sbjct: 59 LDD-KARGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S + +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 118 DAAGVAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLF 237 >gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 249 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 21/242 (8%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQT 100 E+ + G H V A+ +P KI ++ + + + L H V+TVP Sbjct: 4 EDSVIVGRHAVKEAITTGHPINKIL----IQDGVKKQQLEEILKHAKNQKIVVQTVPKSK 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152 +D + EA HQG+A AP LD + +QL L++LD + DPHN+G+ILR Sbjct: 60 LDHLA--EAPHQGVAALVAPYEYADLDKLL-AQLKDKDGLPTLVILDGLEDPHNLGSILR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A DG+I KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G Sbjct: 117 TADAAGVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGT 176 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++D+ Q + +A+++G EG G+ +E + M G I +LN S AA++ Sbjct: 177 AADNATDYRQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLM 236 Query: 273 LY 274 +Y Sbjct: 237 MY 238 >gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] Length = 332 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA HIP R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHIPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ M G+ T+GL K + E + D + ++LG+EGKGL +E+ ++A Sbjct: 236 NLTKAIESMRERGYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKGLSRLVRESCDAIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + ++++LN S AA ++LY Sbjct: 296 GIPITSMVESLNASVAAGISLY 317 >gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] Length = 413 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+AL+TA S TLD + S +L+ LD + DPHN+GAI+RSA A Sbjct: 209 GVHQGIALQTAA--SKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGA 266 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S + +AK A+GALEH P R+ NL +L ++ G+ IGL+ D Sbjct: 267 HGLVLPQRRSAGLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFV 326 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + L++G+E KGL T+ + + + G+ +LN S AA+++LY Sbjct: 327 LNEVDLLGPLVLVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLY 381 >gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 42 HTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 + S +N +YGVH V+ AL N K++ + D + P +T Sbjct: 3 YYSYGKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKT 62 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154 + ++ AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A Sbjct: 63 LQEMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ F G Sbjct: 122 DATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 182 QG-TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 240 >gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 253 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH + A L ++P R LA R+ +L V + + E Sbjct: 7 IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238 >gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] Length = 247 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++L K N L RL ++ V Q Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLG--------ISIQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LD + + + L++LD V DPHN+GA LR+ Sbjct: 57 TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADVAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + Q IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus denitrificans BC] gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans BC] Length = 248 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V N LL+VLD V DPHN+GA LR A +I K ++ SA +AK ASGA E Sbjct: 95 DGVANP-LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAET 153 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +PY ++NL L ++ IG S D+ K L Q +AL+LGAEG G+R T++ Sbjct: 154 VPYFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLGAEGPGMRQLTRK 213 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + M G +++LNVS A+AV LY Sbjct: 214 TCDELVSIPMKGAVESLNVSVASAVCLY 241 >gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 246 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N F+YG+H V+A L +P+R + +LL N LARL H + Sbjct: 3 NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARLGISIQEMHRKALD-- 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 DK G A HQG+ + P L LD + LL+VLD V DPHN+GA Sbjct: 61 -----DKAQG--ANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 313 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 24/268 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 +H KL + RD + RH + + G + V L++ P+ ++ TK Sbjct: 48 AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHSKVPATSLYIAEGTK 98 Query: 76 NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125 N ARL + H P+ V +D++ G +HQG+ L+ P L++ Sbjct: 99 ND-ARLSEAVQMAHRRGIPLIEVARHELDRMTGN-GMHQGIGLQIPPYKYVEVYDLITQA 156 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D+ +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 157 KDS-GEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAA 215 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P + +N+T AL++ G+Q +GL + L+ + +++G+EGKG+ + Sbjct: 216 RLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGISRLVR 275 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 ET S+ + M +++LN S AA V L Sbjct: 276 ETCDSIMSIPMARWVESLNASVAAGVVL 303 >gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] Length = 313 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 24/268 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 +H KL + RD + RH + + G + V L++ P+ ++ TK Sbjct: 48 AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHSKVPATSLYIAEGTK 98 Query: 76 NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125 N ARL + H P+ V +D++ G +HQG+ L+ P L++ Sbjct: 99 ND-ARLSEAVQMAHRRGIPLIEVARHELDRMTGN-GMHQGIGLQIPPYKYVEVYDLITQA 156 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D+ +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 157 KDS-GEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAA 215 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P + +N+T AL++ G+Q +GL + L+ + +++G+EGKG+ + Sbjct: 216 RLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGISRLVR 275 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 ET S+ + M +++LN S AA V L Sbjct: 276 ETCDSIMSIPMARWVESLNASVAAGVVL 303 >gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 249 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L K+F + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] Length = 248 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQT--IDKIV 105 L+G H V L + I ++ AT+ AR+ + + + + I K+ Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEATRRD-ARMRQFLDRAREAGARLIEADSVRIAKLA 64 Query: 106 GKEAVHQGLALETAPLLSPT--------LDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 G HQG+A P+ T L+A Q LL+VLD V DPHN+GA LR A Sbjct: 65 GSHG-HQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADG 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 124 AGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDA 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + Q +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 184 PKTIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLY 241 >gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum STM815] Length = 247 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 111 HQGLALETA--PL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ PL L+ LD ++ LL+VLD + DPHN+GA LR A A +I Sbjct: 69 HQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ L + Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLYETKL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLF 237 >gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD + DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRSASVNAAAWKVSAGAAAHMPIARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +IGL K + E + D + ++LG+EGKGL T+E ++A Sbjct: 236 NLTKAIEALKERGYYSIGLDGGGSKLVGETGFETDPLVVVLGSEGKGLSRLTREACDAIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA +ALY T N Sbjct: 296 SIPITSAVESLNASVAAGIALYATVN 321 >gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii C-113] Length = 284 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 124/244 (50%), Gaps = 22/244 (9%) Query: 52 YGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKI 104 YG+H V AAL P+ ++ L + LA+L +D L PVK + +D++ Sbjct: 31 YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGL-KAQPVKR---EELDEL 86 Query: 105 VGKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 V A HQG+ AL LL+ LD + LL++LD V DPHN+GA LR+A A Sbjct: 87 V-PGARHQGVVARCSVQSALTEEGLLA-FLDQLGTPPLLLLLDGVQDPHNLGACLRTAEA 144 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSD 215 G++ K + +AV K ASGA E +P +R++NL ++ + G +G + Sbjct: 145 AGVHGVVVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGG 204 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Sbjct: 205 THATLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFE 264 Query: 276 TQNH 279 Q Sbjct: 265 AQRQ 268 >gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] Length = 246 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 LYG++ V AL +RK F+L T +A+L A V+ ++++ Sbjct: 5 ILYGINPVREALRG-NRKAFELFVQTGGTDQRIAKLATLAE-EKGIAVRRRERADLERLA 62 Query: 106 GKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+ L+ AP + L D + N Q L+VLD + DP N+GA++RSA Sbjct: 63 GNPH-HQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAACAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+ K+++GA+E IP I+++NL L+++ G GL+ ++ K Sbjct: 122 VQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEANK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +AL++G+EG+G+RP ++ + + G I +LN S A + L+ Sbjct: 182 DIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLF 237 >gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L++ P R ++F L + + A ++ Q +D Sbjct: 4 IVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ P P L A + L++LD V DPHN+GA +RSA A Sbjct: 63 EGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A K ASGA EHIP IR++NL ++ + +G + ++ L Sbjct: 123 AVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 HQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 247 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + AP L LD V LL+VLD V DPHN+GA LR A +I Sbjct: 70 HQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAP 129 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K ++ +A +AK ASGA E +PY ++NL L ++ IG + D+ + L Sbjct: 130 KDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLYAADL 189 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEG+G+R T++T + L M G +++LNVS A+ + LY Sbjct: 190 RQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLY 238 >gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44] gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44] Length = 256 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 160 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L+++ G IG S D+ K L Q AL+LGAEG G+R T++T ++ Sbjct: 161 NLARTLKELKERGIWIIGTSGDADKHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVS 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 221 IPMQGAVESLNVSVASGVCLY 241 >gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas arsenicoxydans] gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Herminiimonas arsenicoxydans] Length = 247 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 6/176 (3%) Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 IVG HQG+ + L L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 62 IVGTRR-HQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEK 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + ALI+G+EG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 181 GLYEADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLY 236 >gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG AL + LD + ++ LL++LD + DPHN G+ILR+A A G+ Sbjct: 71 AVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G + + P + Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241 >gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 246 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP----FPVKTVPPQTIDK 103 +LYG+H + A + ++ +L K R D N + H V+ +T+D Sbjct: 6 WLYGIHALEAVIEREPERLIELFVLK---GRDDKPINSIINHARKFGIAVQFCQRKTLDD 62 Query: 104 IVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + P LD + + L++LD V DPHN+GA LR+A A Sbjct: 63 KVNGEQ-HQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + IAL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 182 QSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLY 238 >gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] Length = 234 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 110/192 (57%), Gaps = 5/192 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V + DKI + HQG+ LE +L+ + +S L++LD + DPHN+GAI Sbjct: 45 IEISFVDKRFFDKI---DMNHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAI 101 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA +F D +I +R S S ++ + K+++GA+ +I +R++NLT ++ + GF Sbjct: 102 IRSAESFGFDAVIIPERRSASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIY 161 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL+ ++ + K+ L++G EG+G+ +E + ++ M G + +LN S AAA Sbjct: 162 GLAGEAHSDISHADLRGKVGLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAA 221 Query: 271 VALY--ITQNHF 280 +++Y + QN F Sbjct: 222 ISMYELLRQNGF 233 >gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] Length = 249 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 35/256 (13%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84 K + N +YGVH V +L N K++ + LAT+ ++ + W Sbjct: 2 KDNQLIEENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVS-ISW- 59 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL 138 P K++ T AVHQG L A LD + ++ L+++L Sbjct: 60 ------TPKKSLSEMT------DGAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILIL 107 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN G+ILR+A A G+I K + + V+AK+++GA++H+P R++NL+ Sbjct: 108 DGITDPHNFGSILRTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQT 167 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L K+ G+ G D P + + K+ALI+G+EGKG+ ++ M + M G Sbjct: 168 LDKLKEKGYWIFGTDMDG-TPSPKWNTSGKLALIIGSEGKGVSHNIKKQVDEMITIPMDG 226 Query: 259 IIKALNVSNAAAVALY 274 +++LN AAAV +Y Sbjct: 227 HVQSLNAGVAAAVLMY 242 >gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] Length = 338 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 20/242 (8%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQT 100 E LYG +V AAL N SR + ++ T+ R D DA + V P+ Sbjct: 89 EAELLYGKQSVLAALQN-SRPLNRVWLTEKL--RYDPRFLRLLDAAKAGGAVIDIVEPRR 145 Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ HQG+A + A L++ ++ R +L+ D + DPHN+GA++R Sbjct: 146 LDQLTAG-GNHQGVAAQAAAHPYVEFEELIASLVE--RPDPVLLAADGIEDPHNLGALIR 202 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF GII +R + +A +AK A+GA+EH+P R++NL A++++ G+Q +G Sbjct: 203 SAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVTNLNQAIERLKEAGYQVVGT 262 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + L + + + +++G+EGKG+ TQ M + + G +LN S A + Sbjct: 263 QEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMVSIPLAGKTTSLNASVAGGIM 322 Query: 273 LY 274 LY Sbjct: 323 LY 324 >gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160] Length = 242 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 3 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 63 -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G P Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G E KG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTAGKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235 >gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 245 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +++G H V A L P R +++ ++ + DA P K V + +D+ V Sbjct: 5 YVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDERV- 63 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ A T D A L+VLD V DPHN+GA +R+A A Sbjct: 64 -SGVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S S + V K A GA E +P++R++NL L+++ G IG + ++ Sbjct: 123 QAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEADAT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 183 LYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLY 237 >gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 271 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 26/266 (9%) Query: 28 RDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAAL--NNPSRKIF--QLLATKNAL 78 RD ++ Q+ +++ R T+ E L F+YG H L ++ K+F L KNA Sbjct: 3 RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RN 131 A L A V VP + +D + HQG+ + A L+ + Sbjct: 63 AILK--AANKRNILVSNVPKEKLDTL-SDGGNHQGVVMAIAAYKYAELEDIFKKAEEANE 119 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++MVLD + DPHN+G+ILR+A A G+I R + + V+AK+++GA+EH+P +R Sbjct: 120 DPIIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVR 179 Query: 192 ISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++N++ D L++ W F T + S ++ + IA+++G EGKG+ P ++ Sbjct: 180 VTNISKTIDLLKERGVWVFGT-DMKGQSMWQMDAAL---PIAVVIGNEGKGVSPGVKKHL 235 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 M + M G +++LN S AA + +Y Sbjct: 236 DGMITIPMRGHVQSLNASVAAGLLMY 261 >gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans K601] Length = 248 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V N LL+VLD V DPHN+GA LR A +I K ++ SA +AK ASGA E Sbjct: 95 DGVANP-LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAET 153 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +PY ++NL L ++ IG S D+ K L Q +AL+LGAEG G+R T++ Sbjct: 154 MPYFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLGAEGPGMRQLTRK 213 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + M G +++LNVS A+AV LY Sbjct: 214 TCDELVSIPMKGAVESLNVSVASAVCLY 241 >gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida W619] Length = 248 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ L+ + R+ L V+ + + E Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Q Sbjct: 127 VVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLF 238 >gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ AL A L LDAV LL++LD + DPHN+GA LR A +I Sbjct: 68 HQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAVIAP 127 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + +A K +SGA + +PYI ++NL ++ + G IG S D++K L + Sbjct: 128 KDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLYEGDF 187 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G+EG+G+R T+ET + ++ M G +++LNVS A+ V LY Sbjct: 188 TGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLY 236 >gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] Length = 246 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++ K N L RL ++ V Q Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLG--------IAIQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LD + S+ LL++LD V DPHN+GA LR+ Sbjct: 57 TLDNKSQGE-VHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADATGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + + IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEATSSIYEAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 + L+ Sbjct: 233 GICLF 237 >gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] Length = 334 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 7/173 (4%) Query: 109 AVHQGLALE-----TAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ T PL + N + +++ D + DPHN+GAI+RSA AF C G Sbjct: 157 ASHQGVALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKG 216 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S + +AK A+GALEH+ R+ NL AL+++ GF +GLS D + + Sbjct: 217 VIIPQRRSAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISIS 276 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+E KG+ TQ+ + + + G +LN S AAA++LY Sbjct: 277 NFQEKAPLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLY 329 >gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 16/246 (6%) Query: 41 RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96 +H + E F+ G H V AAL ++P K+F K + L + V Sbjct: 2 KHDQENEE-FVMGRHPVVAALKSDSPINKLFIQTGIKKDENIISEILKLARKKRLVISEV 60 Query: 97 PPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 P Q +D++ VG+ HQG+ L A T+D + ++LD++ DPHN+G Sbjct: 61 PKQKLDRLSVGQN--HQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I+R+A A GII K + +AV+AK+++GA+E +P R++NL ++++ S G Sbjct: 119 SIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMW 178 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + K +A+I+G EGKG+ P ++ M + M G I++LN S A Sbjct: 179 VFGTDIEGTDYRRWDAKG-SVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVA 237 Query: 269 AAVALY 274 A+V +Y Sbjct: 238 ASVLIY 243 >gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 245 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L+ +P R ++F L ++ + A ++ Q +D Sbjct: 4 IVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ P P L ++ L++LD V DPHN+GA +RSA A Sbjct: 63 EGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II K S + +A K ASGA EHIP IR++NL ++ + +G + ++ L Sbjct: 123 AIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 YQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus succinogenes 130Z] Length = 245 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L + ++ A K RL N H V+ + QT+D Sbjct: 5 IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKAHG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L LD + N + LL+VLD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL L+ + S +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] Length = 246 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 23/249 (9%) Query: 45 QPENLFLYGVH-TVSAALNNPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTV 96 Q + +YG+H TV A N K++ L KN ALA + + Sbjct: 5 QEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAA-------QKKVAISWI 57 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 P +++ ++ + AVHQG L + L A+ ++ L+++LD + DPHN+G+I Sbjct: 58 PKKSLSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSI 116 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A GII K + + V+AK+++GA+EH+P R++NL+ L K+ G+ Sbjct: 117 LRTADATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIF 176 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G D P + K+ALI+G EG+G+ ++ M + M G +++LN S AAA Sbjct: 177 GTDMDG-TPSHKWNTAGKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAA 235 Query: 271 VALYITQNH 279 V +Y H Sbjct: 236 VLMYEVFRH 244 >gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. MP688] Length = 249 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKIVG 106 L+G H V + L + ++L K+ + AR+ NL V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P+ + + S L +VLD V DPHN+GA LR A A Sbjct: 66 ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY Sbjct: 186 LFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLY 240 >gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 247 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 29/249 (11%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVPPQT 100 ++LF+YG H + A L+ + I ++ N R D N H V+ Q Sbjct: 3 KSLFIYGFHGIQAQLDTNPQNILKVSTLDN---RQDKRLNTLIQQLDQHGIRVEKTSKQK 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL---DAVRNS-------QLLMVLDHVNDPHNIGAI 150 ++K+ G HQG+ A +L PTL D + N L+++LD + DP N+GA Sbjct: 60 LEKLSGSRT-HQGVV---AEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGAC 115 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGF 207 LRSA A D ++ K S +A++ K+++GAL + ++NL+ ALQK W Sbjct: 116 LRSANAAGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIW-- 173 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IGL + + Q + IA+++G EG GLR T+++ +A + M G +++LNVS Sbjct: 174 -IIGLDGSTDQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSV 232 Query: 268 AAAVALYIT 276 A +AL+ T Sbjct: 233 ATGIALFET 241 >gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 254 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 15/235 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGVH L N ++ I +L +K N + A + V+ V Q +D++ Sbjct: 14 IVYGVHASMETLEN-NQTINKLYLSKSLAKNRAQQFRQTAE-QNKIVVQEVDNQRLDELT 71 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+AL A LD + N L++LD + DPHN+G+ILR+A A D Sbjct: 72 -NHGNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVD 130 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + + V+AK+++GA+EH+P R+ N+ + + K+ F G +D K Sbjct: 131 GIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWIFG--TDMKGAD 188 Query: 221 EQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D +A+++G EGKG+ +T++ M + M G +++LN S AAA+ +Y Sbjct: 189 YTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIY 243 >gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 249 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 26/244 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H VSA L + ++ A K LA LD V++V +T+ Sbjct: 5 LIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELD-----ALGLKVQSVNRKTL 59 Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-----TLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 D K G HQG+ ++ AP L+ LD + Q L+VLD V DPHN+GA Sbjct: 60 DDKAEGNN--HQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGAC 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA A +I + + + ++ K A GA E +P I+++NL +L+++ G + Sbjct: 118 LRSADAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIV 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A Sbjct: 178 GTAGEADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATG 237 Query: 271 VALY 274 V L+ Sbjct: 238 VCLF 241 >gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 322 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148 VP +D++ +HQG+AL+ P L A R+ Q LL+ LD++ DP N+G Sbjct: 130 VPRTDLDRM-SANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDPRNLG 188 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ S G Q Sbjct: 189 AVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQSKGVQ 248 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L+ + +++G+EGKGL +ET S+ + M G +++LN S A Sbjct: 249 VVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVA 308 Query: 269 AAVAL 273 A V L Sbjct: 309 AGVVL 313 >gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 247 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L +P R +F + ++ V+ Q +D+ V Sbjct: 4 IIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEKV- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+ P L L + + L++LD V DPHN+GA LRSA A Sbjct: 63 EGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 123 DAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEADHS 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 LYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237 >gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 321 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148 VP +D++ +HQG+AL+ P L A R+ Q LL+ LD++ DP N+G Sbjct: 129 VPRTDLDRM-SANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDPRNLG 187 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ S G Q Sbjct: 188 AVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQSKGVQ 247 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L+ + +++G+EGKGL +ET S+ + M G +++LN S A Sbjct: 248 VVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVA 307 Query: 269 AAVAL 273 A V L Sbjct: 308 AGVVL 312 >gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus TPSY] Length = 248 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 11/174 (6%) Query: 111 HQGLALETAPL-----LSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+A + L LD V+N LL+VLD V DPHN+GA LR A Sbjct: 69 HQGVAARVEAVAQVRTLDELLDELEARGVKNP-LLLVLDGVTDPHNLGACLRVADGAGAH 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K L Sbjct: 128 AVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADKTL 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 188 YQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLY 241 >gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] Length = 244 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 26/241 (10%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V + L+ ++ ++ K N L RL V+ V Q Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLG--------IRVQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLA---LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 +D E VHQG+ ++ L LD + + + L++LD V DPHN+GA LR+ Sbjct: 57 ALDNKAQGE-VHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D +I K S ++ K A GA E +P IR++NL ++++ +G + Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTA 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + L Q IAL++GAEG G+R T+E + + M G + +LNVS A V L Sbjct: 176 GEATESLYQVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCL 235 Query: 274 Y 274 + Sbjct: 236 F 236 >gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 28/250 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102 ++YG H V A L R I L N L +L D + V+ V +D Sbjct: 4 WVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVA----VERVSGAALD 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAIL 151 ++ HQG+A++ T +A+ ++S LL++LD V DPHN+GA L Sbjct: 60 EVAAGR--HQGIAVQVKS--GATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACL 115 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A ++ + + S V K A GA + +P++R++NL L ++ + G IG Sbjct: 116 RTADAAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIG 175 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + + L ++ + +A+++GAEG G+R T+E + L M G + +LNVS A + Sbjct: 176 TSDKASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGI 235 Query: 272 ALY--ITQNH 279 L+ + Q H Sbjct: 236 CLFEAVRQRH 245 >gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] Length = 256 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 160 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L+++ G IG S D+ + L Q AL+LGAEG G+R T++T ++ Sbjct: 161 NLARTLKELKERGIWIIGTSGDADRHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVS 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 221 IPMQGAVESLNVSVASGVCLY 241 >gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2] gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter eiseniae EF01-2] Length = 248 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 101 IDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 I K+ G HQG+A P LL A LL+VLD V DPHN+GA L Sbjct: 60 IAKLAGSHG-HQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACL 118 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A +I K ++ +A +AK ASGA E +PY ++NL L ++ IG Sbjct: 119 RVADGAGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIG 178 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D+ L Q +AL+LGAEG G+R +T++T +A + M G +++LNVS A+ + Sbjct: 179 TCDDAPGTLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGI 238 Query: 272 ALY 274 LY Sbjct: 239 CLY 241 >gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42] Length = 248 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 11/174 (6%) Query: 111 HQGLALETAPL-----LSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+A + L LD V+N LL+VLD V DPHN+GA LR A Sbjct: 69 HQGVAARVEAVAQVRTLDELLDELEARGVKNP-LLLVLDGVTDPHNLGACLRVADGAGAH 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K L Sbjct: 128 AVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADKTL 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 188 YQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLY 241 >gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] Length = 249 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 ++ VP + +D++V + HQG+ + A LD + +N Q +VLD + DPH Sbjct: 52 IQYVPRKKLDQMVSGQ--HQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPH 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GI+ KR + + +AK+++GA+EHIP ++++NL L++M Sbjct: 110 NLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKER 169 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + +++ +AL++G+EGKG+ +E + L M G + +LN Sbjct: 170 GIWVVGTDASAREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNA 229 Query: 266 SNAAAVALY 274 S AA + +Y Sbjct: 230 SVAAGLLMY 238 >gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547] gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM 20547] Length = 323 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 7/180 (3%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAV 155 +D++ E VHQGL L+ P LD + ++ L + LD + DP N+GAI+RSA Sbjct: 134 LDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADVTPLFVALDGITDPRNLGAIIRSAA 192 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF GII T+R S +A ++++GA +P R++NL ALQ++ S G IGL +D Sbjct: 193 AFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARVTNLNRALQELRSQGIFVIGLDAD 252 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + D + +++G+EGKG+ T+E + + M ++LN AAAV LY Sbjct: 253 GDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQIVSIPMTAGNESLNAGTAAAVTLY 312 >gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 250 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145 V+TVP +D++V + HQGL L + LD + + L++LD + DPH Sbjct: 54 VQTVPKNKLDRLV-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL T L+K Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T D + + N K L++G EGKG+ P ++ L M G +++ Sbjct: 173 GYWIFGTDMAGVDYR----EWNANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQS 228 Query: 263 LNVSNAAAVALY 274 LN S A V LY Sbjct: 229 LNASVATGVLLY 240 >gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 328 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104 LYG H V AAL N R++ ++ L +L +D ID++ Sbjct: 70 LLYGRHPVLAALEN-QRQLNRVWI----LPQLRYDHRFHSLLLQAKANGTVIDEVDSRRL 124 Query: 105 --VGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAV 155 V + A HQG+A + AP L + A +++ +++V D + DPHN+GAI+R+A Sbjct: 125 SQVTQGANHQGVAAQVAPYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAE 184 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ +R + ++ + K A+GALE +P R+ NL+ AL+++ + GF G +D Sbjct: 185 ALGAQGLVIPQRRAVGVTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCAD 244 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + K L N I L++G+EG GL TQ + + + G +LN S AAA+ LY Sbjct: 245 AGKLLHTVDLNGSIVLVIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYE 304 Query: 276 T 276 T Sbjct: 305 T 305 >gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] Length = 320 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 29/270 (10%) Query: 28 RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 R +KK + K R QP +N +YG H V +AL + R + +L T Sbjct: 33 RTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHPVLSALES-HRNLNRLWIT---- 87 Query: 79 ARLDWDANLPHPF--------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAV 129 +RL +D H + V P+ +D+I HQG+A + AP L D + Sbjct: 88 SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQITNG-GNHQGVAAQIAPYTYTELEDLI 146 Query: 130 RNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +Q +++V D + DPHN+GAI+R+A A G++ +R + ++ + K A+GAL Sbjct: 147 SQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGAL 206 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E+ R+ NL+ AL+++ GF G ++ +PL L++G+EG+GL T Sbjct: 207 ENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLT 266 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q++ + + + G +LN S A +ALY Sbjct: 267 QKSCDVLVSIPLQGKTPSLNASVATGMALY 296 >gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella tarda FL6-60] Length = 247 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L +P R +F + ++ V+ Q +D+ V Sbjct: 4 IIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEKV- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+ P L L + + L++LD V DPHN+GA LRSA A Sbjct: 63 EGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 123 DAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEADHS 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 LYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237 >gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 251 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 8/172 (4%) Query: 111 HQGLA-----LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + A ++ ++ ++Q L +VLD V DPHN GA LR A D + Sbjct: 68 HQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAGVDAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S S +A ++K +SGA E IP I ++NL ++++M G +G +++K + Sbjct: 128 VIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAEKSIYD 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 IA+++GAEG+G+R T+ET + + M G++++LNVS A+ V LY Sbjct: 188 LDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLY 239 >gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++ K N L RL ++ V Q Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLG--------IAIQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ + P L LD + S+ LL++LD V DPHN+GA LR+ Sbjct: 57 TLDNKSQGE-VHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S ++ K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEATSSIYDAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 442 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 100/173 (57%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ L+TA + L+ + +S LLM +D + DPHN+GAI+RSA A G Sbjct: 213 AVHQGIVLQTAAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHG 272 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL +L+++ G++ +GL+ + L Sbjct: 273 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVGLAEEGSATLA 332 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + ++ G+EG+GL T+ + + + G+ +LN S A A+ LY Sbjct: 333 EADLDGPLVVVTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATALLLY 385 >gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 7/172 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG L + LD + ++ LL++LD + DPHN G+ILR+A A G+ Sbjct: 71 AVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G + + P + Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241 >gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 318 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 14/200 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 PV V +D++ G +HQG+ L+ P L+ D+ R L++VLD++ Sbjct: 118 IPVLEVARDEMDRMTGN-GMHQGIGLQVPPYKYAADDDLIERAKDSGRPG-LIVVLDNIT 175 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA++RS AF G++ +R S S +AV ++++G +P R +NL +L+K Sbjct: 176 DPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLKKF 235 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+Q +GL + L+ D + +++G+EGKGL ET + + M +++ Sbjct: 236 QQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTVES 295 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN S AA V L + FA+ Sbjct: 296 LNASVAAGVVL----SEFAR 311 >gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 288 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 8/181 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 +D+I K A HQG+A + +P L+ ++ + ++++ + + DPHN+GAI+R+ Sbjct: 97 LDQITSK-ANHQGIAAQMSPYEYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRT 155 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A C G++ +R + ++ + K A+GALE++P R+ NL AL+++ + GF G + Sbjct: 156 AEAMGCQGVVIPQRRAAGVTSTVMKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGAA 215 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + S K L I L+LG+EG+GL TQ++ + + + G +LN S AAA+AL Sbjct: 216 AKSGKSLHTINLTGAIGLVLGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMAL 275 Query: 274 Y 274 Y Sbjct: 276 Y 276 >gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 247 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 122/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A L+N ++ ++L K N L RL ++ V Q Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLG--------VAIQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ P L L+A+ + + LL++LD V DPHN+GA LR+ Sbjct: 57 TLDNKSQGE-VHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S + K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + +++ + + IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus YJ016] gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio vulnificus CMCP6] gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016] gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] Length = 247 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L+ + + K R D D +P + + V Q + Sbjct: 3 NEFIYGIHAVRAVLDKEPERFIEAYVLKG---RQD-DRLMPILNELQMVGVSLQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ P L LD + S LL++LD V DPHN+GA LR+ Sbjct: 59 LDDKAHG--ANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A +I K S +A ++K A GA E +P +R++NL ++ + G +G + Sbjct: 117 ADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1] gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1] Length = 233 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 9/188 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNI 147 V+ V Q +D++ HQG+AL A LD + N L++LD + DPHN+ Sbjct: 38 VQEVDNQRLDELT-NHGNHQGIALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNL 96 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A DGII KR + + V+AK+++GA+EH+P R+ N+ + + K+ F Sbjct: 97 GSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANF 156 Query: 208 QTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G +D K + D +A+++G EGKG+ +T++ M + M G +++LN S Sbjct: 157 WIFG--TDMKGTDYTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNAS 214 Query: 267 NAAAVALY 274 AAA+ +Y Sbjct: 215 VAAALLIY 222 >gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] Length = 244 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H VSA + + ++L K+ + D V ++K G Sbjct: 3 ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L L +D + LL+VLD V DPHN+GA LRSA A Sbjct: 63 HKQ-HQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S + V++K A GA E IP I ++NL L+++ G IG + ++ L Sbjct: 122 VVLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 N IA +LGAEG G+R T+E + + M G +++LNVS A++V L+ T Q Sbjct: 182 DADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQ 241 Query: 280 FAK 282 F+K Sbjct: 242 FSK 244 >gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 28/245 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 +YG+H VSA L + ++ A K D + HP V++V +T Sbjct: 5 LIYGIHAVSALLERTPERFIEVWALKGR------DDDRLHPLLAEMESLGLKVQSVNRKT 58 Query: 101 ID-KIVGKEAVHQGL---ALETAPL----LSPTLD--AVRNSQ-LLMVLDHVNDPHNIGA 149 +D K G HQG+ +E L L+ LD A + +Q L+VLD V DPHN+GA Sbjct: 59 LDDKAEGNN--HQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGA 116 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 LRSA A +I + + ++V+ K A GA E +P I+++NL +L+++ G Sbjct: 117 CLRSADAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWI 176 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A Sbjct: 177 VGTAGEADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVAT 236 Query: 270 AVALY 274 V L+ Sbjct: 237 GVCLF 241 >gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7] Length = 234 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 38/243 (15%) Query: 51 LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 +YGVH V A L N+P + LA +N + + Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVT-------------IG 53 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +D V E VHQG+ + +P +L LD S LL+VLD V DPHN+ Sbjct: 54 QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNL 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I K S + + + K A GA E IP + ++NL L+K+ G Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +++ L Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVSG 231 Query: 268 AAA 270 A Sbjct: 232 GAC 234 >gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] Length = 250 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 V+ VP + +D++ A HQG+ A L A N Q ++LD + DPH Sbjct: 53 VQFVPKKKVDQL--SSANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKER 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + +A+I+G+EGKG+ +E + HL M G + +LN Sbjct: 171 GIWIAGTDAKGSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNA 230 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 231 SVAAALLMY 239 >gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] Length = 266 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106 F++G H V A L ++ Q+ + T R+ L V + V + +D V Sbjct: 24 FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLDSRVA 83 Query: 107 KEAVHQGLALETAPLLSPTLD----AVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ + + D + NS+ L++LD V DPHN+GA +R+A A Sbjct: 84 --GVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + + V K A GA E +P++R++NL L+ + G +G + ++ Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEGKG+R T+E + ++ M G +++LNVS A+ V LY Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLY 256 >gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 247 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 119/241 (49%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ P L +D A + LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKAHG--ANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] Length = 504 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 8/181 (4%) Query: 101 IDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + +I G AVHQG+AL+TA P L ++ LL+ LD + DPHN+GAI+RS Sbjct: 236 LGQITGG-AVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNLGAIVRS 294 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ +GL+ Sbjct: 295 AEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGYRVVGLA 354 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L + + ++ G+EG GL T+ + + + GI +LN S A A+ L Sbjct: 355 EEGDLTLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASVATALCL 414 Query: 274 Y 274 Y Sbjct: 415 Y 415 >gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324 Length = 309 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 11/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP +D+I +HQG+AL+ P LL+ D+ LL+ LD+++DP N+ Sbjct: 118 VPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDS--PPALLVALDNISDPRNL 174 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RS AFS GI+ +R S S +AV ++++GA IP R +NLT AL+ G Sbjct: 175 GAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGL 234 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + IGL D L+ D +A+++G+EGKGL + + + + M G +++LN S Sbjct: 235 RVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASV 294 Query: 268 AAAVAL 273 A V L Sbjct: 295 AVGVVL 300 >gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC 29413] Length = 327 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 22/243 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPP 98 E+ +YG H V +AL N R + ++ T RL +D + + V P Sbjct: 72 ESDIIYGRHPVLSALEN-QRGLNRIWVTP----RLRYDPRFHNLILQAKENGAVIDEVEP 126 Query: 99 QTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + +D+I +A HQG+A + AP L +V + +++V D + DPHN+GAI+ Sbjct: 127 KRLDQIT-DQANHQGIAAQIAPYSYIEFYELIAQAKSVTDP-VIIVADGITDPHNLGAII 184 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G++ +R + ++ + K A+GALE+ P R+ NL+ AL+ + GF G Sbjct: 185 RTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEAGFWIYG 244 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ +PL I L++G+EG+GL TQ + + + + G +LN S AA + Sbjct: 245 TAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGM 304 Query: 272 ALY 274 ALY Sbjct: 305 ALY 307 >gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae MJ-1236] gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] Length = 247 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 V L+ Sbjct: 234 VCLF 237 >gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 249 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A + L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG EG GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLF 240 >gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 316 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 13/193 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 P+ P +D+I AVHQGLAL+ P L+ P L + L++ LD + Sbjct: 119 LPILETPRGELDRIT-DGAVHQGLALQVPPYEYAHPNDLIDPELPGI---PLIVALDGIT 174 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RS AF G++ R S +A K+++GA IP + +NLT L+ Sbjct: 175 DPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAAARIPVAQCTNLTRTLEDY 234 Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF IGL + L + E+ N+ I +++G+EGKGL +ET + + M ++ Sbjct: 235 RKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRLVRETCDQIVSVPMSSAVE 294 Query: 262 ALNVSNAAAVALY 274 +LN A V LY Sbjct: 295 SLNAGIATGVTLY 307 >gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 252 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145 ++TVP +D++V + HQGL L E A L L D L++LD + DPH Sbjct: 54 IQTVPKNKLDRLV-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K L++G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWVFGTDMAGVDYREWNAKG-KAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 248 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ +A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENAR-RKGIEVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A L + A + LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGSVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S +A + K+++GA + +P + ++NL L+++ G GL+ + Sbjct: 122 AAGVTAVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + +AL+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 182 AETSLYAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLF 240 >gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 418 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 59/296 (19%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY---------GVHTVSAALNN-- 63 ++ + RN+++ F+Q ++ +P+ F++ G H+ A L + Sbjct: 113 VQSRRFTSFSRNNQN-----DFSQSTQEIEKPKQNFVFESESNDIFWGRHSTQAILESGR 167 Query: 64 ------------PSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVGK 107 S + FQLL AL L W A L H V Sbjct: 168 AIHRIWCTSEIRSSPRFFQLLKDAKALGVLVEEVSW-ARLGH---------------VTT 211 Query: 108 EAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+AL+TA S T D ++ S +L+ LD + DP N+GAI+RSA A Sbjct: 212 GGVHQGIALQTAA--SETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALG 269 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I +R S + +AK A+GALEH+P R+ NL +L+++ G+ IGL+ + K Sbjct: 270 AHGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDK 329 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + L +G+E KGL T+ + + + G+ +LN S A +V LY Sbjct: 330 TINEITFDGPLVLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLY 385 >gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas ingrahamii 37] gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas ingrahamii 37] Length = 246 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 25/242 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK--------NALARL-DWDANLPHPFPVKTVPPQT 100 LYG+H+V A L + ++ A K N +A+L +W V+ + + Sbjct: 6 LLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWG------ISVQLMNRKA 59 Query: 101 ID-KIVGKEAVHQGLA--LETAPLLSPT-LDAVRNSQ----LLMVLDHVNDPHNIGAILR 152 +D K G++ HQG+ ++TA +L+ LD++ S L++LD V DPHN+GA LR Sbjct: 60 MDDKSEGEQ--HQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLR 117 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A +I K S S + V+ K A GA E +P I ++NL A++ + G G Sbjct: 118 SADAAGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGT 177 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + L +AL +GAEGKGLR T+E + L M G + +LNVS A V Sbjct: 178 AGEATQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVC 237 Query: 273 LY 274 L+ Sbjct: 238 LF 239 >gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] Length = 378 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ L+TA P L + LLM LD + DPHN+GAI RSA A G Sbjct: 36 AVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMALDGITDPHNLGAIARSAEALGAHG 95 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL AL + G++ IGL+S+ LE Sbjct: 96 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKQEGYRVIGLASEGSVSLE 155 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + ++ G+E GL T++ + + + G +LN S A A+ LY Sbjct: 156 QADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRGATPSLNASVATALLLY 208 >gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN] gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923] gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae] gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923] Length = 278 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 11/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP +D+I +HQG+AL+ P LL+ D+ LL+ LD+++DP N+ Sbjct: 87 VPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDS--PPALLVALDNISDPRNL 143 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RS AFS GI+ +R S S +AV ++++GA IP R +NLT AL+ G Sbjct: 144 GAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGL 203 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + IGL D L+ D +A+++G+EGKGL + + + + M G +++LN S Sbjct: 204 RVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASV 263 Query: 268 AAAVAL 273 A V L Sbjct: 264 AVGVVL 269 >gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 248 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 127/246 (51%), Gaps = 15/246 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTID 102 + + ++G+H V + L ++ +L ++ ++A + A P + +P Q +D Sbjct: 3 QKVTVFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRP-QWIPRQALD 61 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K + HQG+ L S ++ + + L +VLD+V DPHN+GA +R+A Sbjct: 62 K-RAEFGNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + + K A GA+++IP + ++NL AL+ + +G + + Sbjct: 121 AAGATAVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGE 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274 + K L Q +AL++GAEGKG+R T+ET +A + + G + +LNVS A+ V L+ Sbjct: 181 ADKSLYQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFE 240 Query: 275 -ITQNH 279 + Q H Sbjct: 241 AVRQRH 246 >gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 256 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 17/249 (6%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF--PVKT 95 K+ P + +YG+H V++ L N+P R I + RL N + V+ Sbjct: 3 KNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQF 62 Query: 96 VPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGA 149 V QT+DK E VHQG+ E L LD + + + LL+VLD V DPHN+GA Sbjct: 63 VNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGA 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----W 205 LR+A A +I K S +++ K A GA E +P IR++NL L+ + W Sbjct: 122 CLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +G + ++ + + Q +AL++GAEG+G+R T+E + + M G + +LNV Sbjct: 182 ---VVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNV 238 Query: 266 SNAAAVALY 274 S A V L+ Sbjct: 239 SVATGVCLF 247 >gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. SIP3-4] Length = 249 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKIVG 106 L+G H V + L + + ++L K+ + AR+ NL V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P+ + + S L +VLD V DPHN+GA LR A A Sbjct: 66 ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY Sbjct: 186 LFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLY 240 >gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A] gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL2A] Length = 416 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG+ L+ A S TLD A +S LL+ LD + DP N+GAI+RSA A Sbjct: 213 AVHQGIVLQIAA--SKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGA 270 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I +R S + +AK A+GALEH+P R+ NL +L+K+ G+ +GL+ + Sbjct: 271 QGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSST 330 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + +++G+E KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 331 LSEIKFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLY 385 >gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 253 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 83/141 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 102 LLLVLDGVTDPHNLGACLRVADGAGAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L ++ IG S D++K + +ALILGAEG+G+R T++T + Sbjct: 162 NLARTLNELKERNIWCIGTSDDAEKTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVS 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 222 IPMQGAVESLNVSVASGVCLY 242 >gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] Length = 348 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 189 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPIARVV 248 Query: 194 NLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +GL S SK+ + + D + ++LG+EGKGL T+E +A Sbjct: 249 NLTKAIEGLKERGYYAVGLDGSGSKEVGQTGFETDPLIVVLGSEGKGLSRLTREACDCIA 308 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 309 GIPMTSMVESLNASVAAGITLY 330 >gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179] gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179] Length = 245 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 11/234 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YG+H VSA L+ + ++ K RL N H V+ + Q +DK Sbjct: 5 IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + P T + + + LL+VLD V DPHN+GA LR+A A D Sbjct: 65 ET-HQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220 +I + S ++V K A GA E +P IR++NL L+ + + +G + ++ + Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLF 237 >gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQ-----------LLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H+V+A + +I + LL N L RL ++ + Sbjct: 3 NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLG--------LSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 + +D + A HQGL + P L LDA+ + LL+VLD V DPHN+GA Sbjct: 55 GRKALDD-KAQGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ L +A+++GAEG G+R T++T + + M G + +LNVS A Sbjct: 174 GTAGEATHDLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK355] Length = 233 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 8/184 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 P +T+ ++ AVHQG L A + + ++ LL++LD + DPHN+G+I Sbjct: 45 PKKTLQEMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSI 103 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A + G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF Sbjct: 104 LRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIF 163 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA Sbjct: 164 GTDMQG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAA 222 Query: 271 VALY 274 + +Y Sbjct: 223 ILMY 226 >gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] Length = 251 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145 V+ VP +D++V HQGL L E A L L DA L++LD + DPH Sbjct: 54 VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL T L+K Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T +D ++ Q K L++G EGKG+ P ++ L M G +++ Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228 Query: 263 LNVSNAAAVALYITQN 278 LN S A V LY N Sbjct: 229 LNASVATGVLLYQAYN 244 >gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] Length = 442 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 23/217 (10%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 K FQLL + A L V+ V + ++ AVHQG+ L+ A S TL Sbjct: 209 KFFQLLKDQKASGVL-----------VEEVSWSRLGQLTNG-AVHQGIVLQIAA--SKTL 254 Query: 127 D---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D A +S LL+ LD + DP N+GAI+RSA A G+I +R S + +A Sbjct: 255 DLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVA 314 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K A+GALEH+P R+ NL +L+K+ G+ +GL+ + L + + +++G+E Sbjct: 315 KVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVVVVGSED 374 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 375 KGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLY 411 >gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 249 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L +DA + L++VLD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLF 240 >gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] Length = 251 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145 V+ VP +D++V HQGL L E A L L DA L++LD + DPH Sbjct: 54 VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL T L+K Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T +D ++ Q K L++G EGKG+ P ++ L M G +++ Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228 Query: 263 LNVSNAAAVALYITQN 278 LN S A V LY N Sbjct: 229 LNASVATGVLLYQAYN 244 >gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 245 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A + + ++ ++ A K N + RL V+ + Q Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56 Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+DK E VHQG+ + + P L+ LD + +N+ LL+VLD V DPHN+GA LR+ Sbjct: 57 TLDKKAEGE-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A + +I K S ++ K A GA E++P IR++NL LQK H+ W Sbjct: 116 ADAAGVNAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 310 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 11/191 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 P+ VP +D++ +HQG+AL+ P LL+ LD LL+ LD+++ Sbjct: 114 IPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT--PPALLVALDNIS 170 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RS AF G++ +R S S +AV ++++GA +P R +NLT AL+ Sbjct: 171 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDW 230 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + +GL + ++ +D I +++G+EGKGL ++T + + M G ++ Sbjct: 231 ADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTES 290 Query: 263 LNVSNAAAVAL 273 LN S AA V L Sbjct: 291 LNASVAAGVVL 301 >gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] Length = 310 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 11/191 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 P+ VP +D++ +HQG+AL+ P LL+ LD LL+ LD+++ Sbjct: 114 IPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT--PPALLVALDNIS 170 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RS AF G++ +R S S +AV ++++GA +P R +NLT AL+ Sbjct: 171 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDW 230 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + +GL + ++ +D I +++G+EGKGL ++T + + M G ++ Sbjct: 231 ADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTES 290 Query: 263 LNVSNAAAVAL 273 LN S AA V L Sbjct: 291 LNASVAAGVVL 301 >gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573] gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603] gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603] gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573] gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] Length = 246 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii Ech703] gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech703] Length = 244 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP-FPVKTVPPQTIDKIVG 106 +YG+H V A L ++ ++ K R L A L VK Q +D+ Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDE-KA 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ P L R++ L+VLD V DPHN+GA LRSA A Sbjct: 63 EGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + S +A K A GA E +P IR++NL L+ + +G + ++ L Sbjct: 123 AVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] Length = 245 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N F+YG+H V A L +P R I +L+ N L ++ ++ + Sbjct: 3 NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIG--------VSIQQM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 +T+D + A HQG+ + P L LD++ + LL++LD V DPHN+GA Sbjct: 55 NRKTLDD-KARGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G Sbjct: 114 LRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIA 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q + +A+++GAEG G+R T+ET + + M G + +LNVS A+ Sbjct: 174 GTAGEATHDIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus] Length = 249 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + + G H V A+ + ++ + Q K + + AN V++VP ID Sbjct: 2 EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKKAN-SRKIIVQSVPKSKIDG 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + ++ HQG+A AP DA Q +++LD + DPHN+G+ILR+A A Sbjct: 61 L--SDSPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S + + +AK+++GA+EHIP +R++NL + ++ + G+ +G +++ Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEANN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++G+EG+G+ ++ ++ M G + +LN S AA++ +Y Sbjct: 179 STDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMY 236 >gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus KT] gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus flagellatus KT] Length = 251 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + + ++L ++ + AR+ + V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ P D ++ +VLD V DPHN+GA LR A A Sbjct: 66 GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL L+++ G +G ++++ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +AL+LGAEG GLR TQET S+ + M G +++LNVS A+ + LY Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLY 240 >gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] Length = 246 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YG+H V++ L N+P R I + RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64 Query: 108 EAVHQGL---ALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ E L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395] gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae LMA3894-4] Length = 247 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 V L+ Sbjct: 234 VCLF 237 >gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] Length = 310 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 19/239 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104 +YG H V AAL R+I ++ + +L +D+ ID++ Sbjct: 51 LIYGRHPVIAALEG-DRQINKIWV----MPKLRYDSRFHSLLTQAKANGTVIDEVDPHRL 105 Query: 105 --VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K A HQG+ + +P L+ A ++ ++++ D + DPHN+GA++R+ Sbjct: 106 SQITKGANHQGIVAQISPYAYVELEELIEQAKARSSAPVILIADGITDPHNLGAMIRTTE 165 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ +R + ++ + K A+GALEH+P R+ NL+ AL+++ GF G +D Sbjct: 166 AMGAQGLVIPQRRAAGITSTVMKVAAGALEHLPVARVVNLSRALEQLKEAGFWLYGTMAD 225 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S K L + L++G+EG+GL TQ++ ++ + + G +LN S A A+ALY Sbjct: 226 SGKLLHTIDFKGAVGLVVGSEGEGLSLLTQKSCDALVSIPLAGKTPSLNASVATAIALY 284 >gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] Length = 542 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 30/289 (10%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------------FLYGVHT 56 F ++ Y RR+ D ++ S +SR ++P+ ++G H Sbjct: 169 FRDRNDRYGDRRRSG-DERRQPSQRSRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHA 227 Query: 57 VSAAL--NNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 AAL P +I+ ++A +L DA V+ V + +I G +VHQ Sbjct: 228 TQAALEAGRPIHRIWCTAEMRSASKFLQLLRDAKASGVL-VEEVTWARLGQITGG-SVHQ 285 Query: 113 GLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G+AL+TA + LD++ LL+ LD V DPHN+GA++RSA A G++ Sbjct: 286 GIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIP 345 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R S + AK A+GALEH+P R+ NL +L+K+ G++ +GL+++ L Sbjct: 346 QRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDL 405 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 406 SGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVY 454 >gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC 19707] gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 274 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 22/244 (9%) Query: 52 YGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKI 104 YG+H V AAL P+ ++ L + LA+L + L + V + +D + Sbjct: 31 YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLK----AQLVKREELDDL 86 Query: 105 VGKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 V A HQG+ AL LL+ L+ + LL++LD V DPHN+GA LR+A A Sbjct: 87 V-PGARHQGVVARCSVQPALTEEGLLT-FLENLEAPPLLLLLDGVQDPHNLGACLRTAEA 144 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSD 215 G++T K + +AV K ASGA E IP +R++NL ++ + G +G + Sbjct: 145 AGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGG 204 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S L + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Sbjct: 205 SHNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFE 264 Query: 276 TQNH 279 Q Sbjct: 265 AQRQ 268 >gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] Length = 246 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H+V A L+N ++ ++ K +A L+ V+ Q + Sbjct: 4 IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVVQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L A + L+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 244 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 23/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFP-----VKTVPPQTID 102 +YG+H V A L ++ Q+ K R D LP H ++ Q +D Sbjct: 4 IIYGIHAVRALLERDPLRLKQVYILKG---RED-KRLLPIIHQLEKLGIIIQLANRQWMD 59 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVA 156 + + AVHQG+ E P LD + + S L++LD + DPHN+GA LRSA A Sbjct: 60 RQT-ENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGFQTIGLSS 214 D +I K S +A K A GA E +P IR++NL L+++ H W +G + Sbjct: 119 AGIDAVIVPKDKSAQLNATAKKVACGAAESVPLIRVTNLARTLRQLQQHIW---IVGTAG 175 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + IAL++GAEG+G+R T+E + + M G++ +LNVS A V L+ Sbjct: 176 EANHTLYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLF 235 >gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3] gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3] Length = 247 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ ++ A L+ +D + S LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKAHG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + VP Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVPVQVANRQWL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 59 DEKADGAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] Length = 248 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 113/239 (47%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ V+ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATG-----LVVQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L A S L+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P IR++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236 >gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 19/272 (6%) Query: 18 SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 +H K++R R+ ++ + KS +P + + G + V+ A P ++F L Sbjct: 49 AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108 Query: 74 TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123 K+ R++ L PV V + +D + AVHQG+A+E + L++ Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +L + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + K ++GA Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242 +P R++NL AL++ G+ +GL PL + + + ++ GAEG GL Sbjct: 225 AARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +ET + + + +++LN + A +ALY Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALY 316 >gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. CB0205] Length = 406 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ ++ A L +D R+ LLM LD + DPHN+GAI+RSA A G Sbjct: 134 AVHQGIVMQAAAADTLDLGTLIDGCRDLGEPPLLMALDGITDPHNLGAIVRSAEALGAHG 193 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL AL + + G++ IGL+ + L Sbjct: 194 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKNEGYRVIGLAGEGSVALS 253 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + ++ G+EG GL T++ + + + G +LN S A A+ LY Sbjct: 254 EADLDGPLVVVTGSEGDGLSMLTRKHCDQLVRIPIRGATPSLNASVATAMVLY 306 >gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B] gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus cellulolyticus 11B] Length = 250 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 11/198 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHN 146 ++ V + +D++ G HQG+ + P + R LL+ +D V DP N Sbjct: 54 IRVVARRELDRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRN 111 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA AF G++ KR + + + K+++GAL +P R++N+ L + Sbjct: 112 LGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERN 171 Query: 207 FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +GLS+D ++Q + +AL++GAEG+GL +E T +A + M G +++L Sbjct: 172 VTVVGLSADGDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESL 231 Query: 264 NVSNAAAVALYITQNHFA 281 NVS A +AL++ + Sbjct: 232 NVSVATGIALFVLSQRLS 249 >gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] Length = 256 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTID 102 +N ++G+H+V AA+ + ++ + A + W A PV V + +D Sbjct: 3 QNRIIHGLHSVRAAVRYDPTHVVEVWLDRQARSG-RWQALRRQLEALACPVHLVDRRQLD 61 Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAV 155 ++ + VHQG+A+ A P L+A+ + LL+VLD V DPHN+GA LR+A Sbjct: 62 RLTSGQ-VHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 +IT + + + + K+A+GA++HIP +++NL L+K+ G IG + Sbjct: 121 GAGVQAVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQ 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + + + L++GAE GLR T+ + + M G I +LNVS A V LY Sbjct: 181 ADVTLYEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLY 239 >gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 316 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 140/279 (50%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++++ K H AKL R R+ RH + + + G + V L+ P Sbjct: 40 KAEDRVYHAK--HKAKLERERRN---------SGRHDKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121 + ++ + T+N ARL + + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATSLYIVQGTRND-ARLSEAVAMCNTRNIPILEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 122 ---LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + +D R++Q + ++LD++ DP N+GA++RS AF G+I +R S S +AV Sbjct: 146 YADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R++N+T +Q G+Q +GL + + L+ D + +++G Sbjct: 206 AWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ +E ++ + M +++LN S AA L Sbjct: 266 SEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVL 304 >gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] Length = 259 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 120/243 (49%), Gaps = 20/243 (8%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN------LPHPFPVKTVPPQTIDKIV 105 YG+H V AAL P+ ++ L + AR+D + V + +D +V Sbjct: 16 YGLHAVRAALEQPALQVMALWLDQ---ARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV 72 Query: 106 GKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+ AL LL+ L+ + LL++LD V DPHN+GA LR+A A Sbjct: 73 -PGARHQGVVARCSVQPALTEEGLLT-FLENLEAPPLLLLLDGVQDPHNLGACLRTAEAA 130 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDS 216 G++T K + +AV K ASGA E IP +R++NL ++ + G +G + S Sbjct: 131 GVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGS 190 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Sbjct: 191 HNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEA 250 Query: 277 QNH 279 Q Sbjct: 251 QRQ 253 >gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 7/172 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG L + LD + + LL++LD + DPHN G+ILR+A A G+ Sbjct: 71 AVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVCGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G + + P + Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241 >gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 247 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V + L+N S +I + +K+ +L D ++ + +D I Sbjct: 4 LVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLD-IQT 62 Query: 107 KEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + A+HQG+ ++ P L L + + LL++LD V DPHN+GA LRSA A Sbjct: 63 QGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAAGA 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S + + K ASG++++IP+++++NL LQ + + IG S++ Sbjct: 123 HIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQRL 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A ++G+EG G+R TQ+ + + M G+ +LNVS A + L+ Sbjct: 183 IFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLF 237 >gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1] gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14] Length = 242 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 23/242 (9%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPP 98 +N +YGVH V +L N K++ L KN ALA + P Sbjct: 3 QNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA-------EKKVSISWTPK 55 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152 +T+ + + AVHQG L + L + ++ L+++LD + DPHN G+ILR Sbjct: 56 KTLSDMT-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILR 114 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G Sbjct: 115 TADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGT 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV Sbjct: 175 DMNG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVL 233 Query: 273 LY 274 +Y Sbjct: 234 MY 235 >gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 287 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 10/189 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q +DK+ HQG+ A LD A ++LD + DPH Sbjct: 91 VQFVPKQKVDKLAEN---HQGIVASVAAYDYAELDDLFAAAKAKSEDPFFLILDELEDPH 147 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + +AV+AK+++GA+EH+P +R++NL + ++ Sbjct: 148 NLGSIMRTADAIGAHGIIIPKRRAVGLTAVVAKASTGAIEHVPVVRVTNLAQTVDELKDR 207 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + +ALI+G+EGKG+ ++ + HL M G + +LN Sbjct: 208 GVWIAGTDAKGSADYRKMDATLPLALIIGSEGKGMSRLLKDKCDFLYHLPMVGHVTSLNA 267 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 268 SVAAALLMY 276 >gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 247 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 V L+ Sbjct: 234 VCLF 237 >gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus crispatus ST1] gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus ST1] Length = 251 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145 V+ VP +D++V HQGL L E A L L DA L++LD + DPH Sbjct: 54 VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILRSA A DGI+ KR++ ++V+AK+++GA++++P R++NL T L+K Sbjct: 113 NLGSILRSADATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T +D ++ Q K L++G EGKG+ P ++ L M G +++ Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228 Query: 263 LNVSNAAAVALYITQN 278 LN S A V LY N Sbjct: 229 LNASVATGVLLYQAYN 244 >gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M] gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M] Length = 1056 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 5/235 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q N+ +YG + + A+ RKI+QL + L H + V + + + Sbjct: 818 QIINMIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDL 876 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ HQG+A LD +S Q ++LD +NDPHN+GAILR+ A + DG Sbjct: 877 T-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACALDG 935 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +K++ ++ +AK + GALE+ ++NL + K+ +G S+S + Sbjct: 936 VIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFH 995 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q KN +A+I+G EG G+R ++ + + M G I +LNVS AAA+ +Y T Sbjct: 996 QIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIYST 1050 >gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] Length = 255 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K + L+ V+ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTG-----LAVQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D+ V + AVHQG+ P L++V ++ L+VLD V DPHN+GA LRSA Sbjct: 59 DEKV-EGAVHQGIIARVREGRKPQENDLPALLESV-DTPFLLVLDGVTDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + S +A K A GA E++P IR++NL L+ + +G S Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEGKG+R T+E + + M G++ +LNVS A + L+ Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLF 236 >gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] Length = 169 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD + DPHN+G+ILR+A A + G+I K + + V+AK+A+GA+EH+P R++ Sbjct: 23 LLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVT 82 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ L K+ GF T G + P + KIALI+G EGKG+ ++ M Sbjct: 83 NLSQTLDKLKDEGFWTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMIT 141 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN S AAA+ +Y Sbjct: 142 IPMNGHVQSLNASVAAAILMY 162 >gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter turicensis z3032] gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter turicensis z3032] Length = 243 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L + P R ++F L ++ RL L H + VP Q ++ Sbjct: 4 MIYGIHAVQALLESAPERFQEVFILKGREDK--RL---LPLIHALEAQGVPVQVANRQWL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 59 DEKADGAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 246 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N F+YG+H V A L +P+R I + L ++ + ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDE- 61 Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P L LD A LL+VLD V DPHN+GA LR+A A Sbjct: 62 KAQGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLF 237 >gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus LGP32] gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio splendidus LGP32] Length = 246 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N F+YG+H V A L +P+R I + L ++ + ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDE- 61 Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P L LD A LL+VLD V DPHN+GA LR+A A Sbjct: 62 KAQGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237 >gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] Length = 237 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL-ATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGV V L + R + ++L +T N + RL DA + V+ VP + ++ G Sbjct: 4 VVYGVRPVIEVLRSRRRAVHEVLDSTGNREVERLAADAGVG----VRRVPRGRVARLAGG 59 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQG+A P L+ V + L+ VLD V DP N+GA+LR+A + G++ Sbjct: 60 GA-HQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVP 118 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + + K+++GA EH+ R++NL A+ +M G + E ++ Sbjct: 119 KDRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLWVYAAEPGGENYAEADLS 178 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LG+EG+G+R +E + + M G + +LNVS AAA+ LY Sbjct: 179 G-PVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLY 226 >gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC 5463] Length = 250 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 ++ VP +D++V HQGL L + LS LD + L++LD + DPH Sbjct: 54 IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K L++G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145 V+T P +D++V HQGL L E A L L D V L++LD + DPH Sbjct: 55 VQTAPKNKLDRLVAG-GNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPH 113 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILRSA A D II KR++ ++V+AK+++GA++++P R++NL T L+K Sbjct: 114 NLGSILRSADATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKR 173 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T +D + Q N K L++G EGKG+ P ++ L M G +++ Sbjct: 174 GYWIFGTDMKGTDYR----QWNANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQS 229 Query: 263 LNVSNAAAVALY 274 LN S A + LY Sbjct: 230 LNASVATGILLY 241 >gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SE11] gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 243 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ L A ++ Q +D+ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDE-KS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 63 DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 123 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus pseudintermedius ED99] Length = 249 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 106/189 (56%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D++ A HQG+A AP L+ Q +++LD + DPH Sbjct: 50 VQTVPKSKLDQLA--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DGII KR S S + +AK+++GA++H+P IR++NL+ + + Sbjct: 108 NLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDK 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G + + Q + +A+++G+EG+G+ + +E + M G + +LN Sbjct: 168 GYWIAGAEASNATDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 246 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD--WDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V+A L N ++ ++ K RL+ D V+ V QT+D Sbjct: 5 IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRLSISVQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L L+ + +++ LL++LD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S + +A+ K A GA E +P IR++NL ++++ W +G + ++ Sbjct: 124 VIVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIW---IVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TDIYTSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLF 237 >gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803] gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803] Length = 384 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 19/239 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104 LYG H V AAL+ R++ ++ T + + + + TV +D++ Sbjct: 125 LLYGHHAVLAALDG-DRQLNRIWITSHLRHDIRYRTKIQTAKANGTV----VDEVDNFRL 179 Query: 105 --VGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAV 155 + A HQG+A + AP L +D ++ + +L+++D + DPHN+GAI+R+A Sbjct: 180 NQITHNANHQGIAAQVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAE 239 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF G++ +R ++ + K A+GALEH P R+ NL+ AL+ + GF G + Sbjct: 240 AFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIYGTVAG 299 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q + + L++G+EG+GL TQ+ + + + G +LN S AAA++LY Sbjct: 300 KQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLY 358 >gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] Length = 243 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 99/169 (58%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPLLSPTLDAV----RNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + LD + RNS QL+++LD + DPHN+GAI+R+A A + D +I Sbjct: 67 HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDAVIIP 126 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +A +AK+++GAL HI ++ NL+ ++++ GF GL D +K + Sbjct: 127 HDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYYEIDF 186 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ND A+++G+EGKG+R ++ ++ L + G +++LN S +AA+ LY Sbjct: 187 NDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLY 235 >gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] Length = 324 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 9/175 (5%) Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +A HQGL L+ P T D + + L++ LD V DPHN+GAI RSA AF Sbjct: 141 KAAHQGLILQVEPYEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAH 200 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R + + K+++G L IP ++ NLT L++ GF GL +D PL Sbjct: 201 GLLVPERRAAGVTTAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPL 260 Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +Q E+ + +++G+EGKGL +ET + + + G +++LN S AA VALY Sbjct: 261 DQWELATEPSVVVVGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALY 314 >gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] Length = 250 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 109/192 (56%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ A HQG+ A L+ + + ++LD + DPH Sbjct: 53 VQFVPKKKVDQL--SSANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S S +AV+AKS++GA+EH+P +R++NL + ++ Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKER 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G +D+K ++ K D +A+I+G+EGKG+ +E + HL M G + + Sbjct: 171 GIWIAG--TDAKGSVDYR-KMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTS 227 Query: 263 LNVSNAAAVALY 274 LN S AAA+ +Y Sbjct: 228 LNASVAAALLMY 239 >gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 244 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---MPLIHALEAQGVVIQLANRQFL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] Length = 515 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAAL--NNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++G H AAL P +I+ ++A +L DA V+ V + +I Sbjct: 188 LIWGRHATQAALEAGRPIHRIWCTAEMRSASKFLQLLRDAKASGVL-VEEVTWARLGQIT 246 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G +VHQG+AL+TA + LD++ LL+ LD V DPHN+GA++RSA A Sbjct: 247 GG-SVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMG 305 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S + AK A+GALEH+P R+ NL +L+K+ G++ +GL+++ Sbjct: 306 AHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDV 365 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 366 TLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVY 421 >gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] Length = 309 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 15/264 (5%) Query: 21 AKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77 A LR NH K+ QS ++ ++ T + E + G + V L P+ ++ L T+ A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97 Query: 78 LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRN 131 RL + + VP +D++ G +HQG+AL+ P + L+A Sbjct: 98 DERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAG 156 Query: 132 S--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 S LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 157 SPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ Sbjct: 217 ARATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCD 276 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN S AA V L Sbjct: 277 EVVSIPMAGSAESLNASVAAGVVL 300 >gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] Length = 333 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 180 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVCRVV 239 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + + G+ +GL K + E + D + ++LG+EGKGL +E ++A Sbjct: 240 NLTKAIEALKARGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGKGLSRLVREACDAIA 299 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +++LN S AA ++LY N K Sbjct: 300 GIPISSQVESLNASVAAGISLYAVANERRK 329 >gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3] gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis ST3] Length = 242 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 23/241 (9%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 N +YGVH V +L N K++ L KN ALA + P + Sbjct: 4 NDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA-------EKKVSISWTPKK 56 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + + AVHQG L + L + ++ L+++LD + DPHN G+ILR+ Sbjct: 57 TLSDMT-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G Sbjct: 116 ADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTD 175 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 176 MNG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLM 234 Query: 274 Y 274 Y Sbjct: 235 Y 235 >gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 247 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A +N ++ ++L K N L RL ++ V Q Sbjct: 5 IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLG--------VAIQQVNRQ 56 Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 T+D E VHQG+ P L L+A+ + + LL++LD V DPHN+GA LR+ Sbjct: 57 TLDNKSQGE-VHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A D +I K S + K A GA E +P IR++NL LQ+ H+ W Sbjct: 116 ADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVW---I 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + +++ + + IAL++GAEG G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101] Length = 556 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ L+ A L +D R+ LLM LD + DPHN+GAI+RSA A G Sbjct: 276 AVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPHNLGAIVRSAEALGAHG 335 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ ++ L Sbjct: 336 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEEGYRVIGLAGEAGVALS 395 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + ++ G+EG GL T++ + + + G +LN S A A+ LY Sbjct: 396 EADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNASVATAMVLY 448 >gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%) Query: 41 RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96 +H + E F+ G H V AAL ++P K+F K + L + V Sbjct: 2 KHDQENEE-FVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEV 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149 P Q +D++ + HQG+ L A T+D + N++ ++LD++ DPHN+G+ Sbjct: 61 PKQKLDRLSASQN-HQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII K + +AV+AK+++GA+E +P R++NL ++++ G Sbjct: 120 IIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWV 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + +A+I+G EGKG+ P ++ M + M G I++LN S AA Sbjct: 180 FGTDIEGTDYRRWDARG-SVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAA 238 Query: 270 AVALY 274 +V +Y Sbjct: 239 SVLIY 243 >gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 261 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 12/249 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91 + N K + ++ E++ + G + V AL +R I +LL + AL R +D Sbjct: 5 NLNLKKKGRNRLEDI-IAGRNPVREALR-ANRPINKLLIAEGALTGSLREIYDLARERKI 62 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145 PV+ V Q + K+V EA HQG+ A +D + L++LD V+DPH Sbjct: 63 PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+A A GII +R S S +A+S++GA+E++P R++N+ ++ + Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G D ++ + +AL++G EGKGL +E + L M G + +LN Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241 Query: 266 SNAAAVALY 274 S AAA+ Y Sbjct: 242 SVAAALLSY 250 >gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] Length = 270 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKE 108 +YGVH V A + + +A RL L K V P T+D++ + Sbjct: 19 VYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGNAKVVNQPRDTLDRLA-QG 77 Query: 109 AVHQG-------LALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG LA E L L V + LL+VLD + D HN GA LRSA A Sbjct: 78 AVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGITDVHNFGACLRSADAAGA 137 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ K + +A + K A GA E +P R++NL +L +M G G + +++ Sbjct: 138 HGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLARMKELGVWVTGTAGEAEAS 197 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++GAEGKG+R T+E + L M G + +LNVS A + L+ Sbjct: 198 VYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVASLNVSVATGICLF 252 >gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis ATCC 14018] Length = 331 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+Q + G+ IGL K + E + D + ++LG+EGKG+ T+E ++A Sbjct: 236 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321 >gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 247 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD + LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 248 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + +A HQG+A AP + Q +++LD + DPH Sbjct: 50 VQTVPKSKLDHM--SDAPHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DGII KR S + + ++AK+++GA++HIP +R++NL+ + + + Sbjct: 108 NLGSILRTADATGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAH 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF +G +D+ + +A+++G+EG+G+ ++ + M G + +LN Sbjct: 168 GFWIVGTEADNATDYRDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA + +Y Sbjct: 228 SVAAGLMMY 236 >gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 313 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 158 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 217 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+Q + G+ IGL K + E + D + ++LG+EGKG+ T+E ++A Sbjct: 218 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 277 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 278 GIPISSAVESLNASVAAGISLYAVAN 303 >gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica W22703] Length = 246 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H+V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L + LL+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP +D++ +HQGLAL+ P L+ + LL+ LD+++DP N+G Sbjct: 132 VPRTDLDRMS-SNGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLG 190 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ + G Q Sbjct: 191 AVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQ 250 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L++ D +++G+EGKGL +ET S+ + M G +++LN S A Sbjct: 251 IVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVESLNASVA 310 Query: 269 AAVAL 273 A V L Sbjct: 311 AGVVL 315 >gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii Sb227] gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 243 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 332 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+Q + G+ IGL K + E + D + ++LG+EGKG+ T+E ++A Sbjct: 236 NLNKAIQSLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321 >gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] Length = 233 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 106/188 (56%), Gaps = 9/188 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNI 147 V+ V Q +D++ HQG+A+ A LD + N L++LD + DPHN+ Sbjct: 38 VQEVDNQRLDELT-NHGNHQGIAISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNL 96 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A DGII KR + + V+AK+++GA+E++P R+ N+ + + K+ F Sbjct: 97 GSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANF 156 Query: 208 QTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G +D K + D +A+++G EGKG+ +T++ M + M G +++LN S Sbjct: 157 WIFG--TDMKGADYNDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNAS 214 Query: 267 NAAAVALY 274 AAA+ +Y Sbjct: 215 VAAALLIY 222 >gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B] gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B] Length = 247 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100 N F+YG+H V A L + + K R D D +P ++ + +T Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D + A HQG+ P L +D A S LL+VLD V DPHN+GA LR+A Sbjct: 59 LDD-KARGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 118 DAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237 >gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] Length = 331 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+Q + G+ IGL K + E + D + ++LG+EGKG+ T+E ++A Sbjct: 236 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321 >gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%) Query: 41 RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96 +H + E F+ G H V AAL ++P K+F K + L + V Sbjct: 2 KHDQENEE-FVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEV 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149 P Q +D++ + HQG+ L A T+D + N++ ++LD++ DPHN+G+ Sbjct: 61 PKQKLDRLSAGQN-HQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII K + +AV+AK+++GA+E +P R++NL ++++ G Sbjct: 120 IIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWV 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + +A+I+G EGKG+ P ++ M + M G I++LN S AA Sbjct: 180 FGTDIEGTDYRRWDARG-SVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAA 238 Query: 270 AVALY 274 +V +Y Sbjct: 239 SVLIY 243 >gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 288 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 106/181 (58%), Gaps = 8/181 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 +D+I K A HQG+A + +P L+ ++ + ++++ + + DPHN+GAI+R+ Sbjct: 97 LDQITNK-ANHQGIAAQMSPYDYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRT 155 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A C G++ +R + ++ + K A+GALE++P R+ NL AL+++ + GF G + Sbjct: 156 AEAMGCQGVVIPQRRAAGVTSTVMKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTA 215 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + K L I L++G+EG+GL TQ++ + + + G +LN S AAA+AL Sbjct: 216 AKTGKSLHTINLTGAIGLVVGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMAL 275 Query: 274 Y 274 Y Sbjct: 276 Y 276 >gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix DSM 17093] Length = 241 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 12/191 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQ--LLMVLDHVNDP 144 ++ VP +D+ + K HQG+ E P LS P A R + LL++LD + DP Sbjct: 46 LERVPRTQLDQAL-KTTRHQGVVAEL-PELSYADPEAPFTRAARRGEKPLLVLLDGITDP 103 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN GAI+RSA G++T +R S SAV+AK ++GA H+P +++ NL ++ + + Sbjct: 104 HNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKA 163 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G G S D+ L Q++ D+ AL++GAEG G+R +ET + + M G + +L Sbjct: 164 RGVWLYGASGDAAA-LPQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASL 222 Query: 264 NVSNAAAVALY 274 N S AA + LY Sbjct: 223 NASVAAGILLY 233 >gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 309 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 15/264 (5%) Query: 21 AKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77 A LR NH K+ QS ++ ++ T + E + G + V L P+ ++ L T+ A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97 Query: 78 LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRN 131 RL + + VP +D++ G +HQG+AL+ P + L+A Sbjct: 98 DERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAG 156 Query: 132 S--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 S LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 157 SLPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ Sbjct: 217 ARATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCD 276 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN S AA V L Sbjct: 277 EVVSIPMAGSAESLNASVAAGVVL 300 >gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] Length = 251 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 18/240 (7%) Query: 50 FLYGVHTVSAALNNPSRKI--FQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIV 105 +YG+H V A ++ ++I LL +N RL ++ V+TV + +D +V Sbjct: 7 IVYGLHAVQALVDGSPQRIQTLWLLKGRND-QRLQSIRSVAEKSRITVRTVAREKLDGMV 65 Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLL---MVLDHVNDPHNIGAILRSA 154 E HQG+ + L L ++ S ++ +VLD V DPHN+GA LRSA Sbjct: 66 --EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGACLRSA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S S + + K A GA E +P +R++NL+ L+ + S G +G + Sbjct: 124 EAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGAAG 183 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++ Q +A+++GAEGKGLR T+E S+ + M G + +LNVS A+ + L+ Sbjct: 184 EAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGICLF 243 >gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] Length = 247 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQG+ P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 V L+ Sbjct: 234 VCLF 237 >gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii B565] Length = 249 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 28/245 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 +YG+H V+A L + ++ A K D + P V++V +T Sbjct: 5 LIYGIHAVTALLERTPERFIEVWALKGR------DDDRLQPLLTELESLGLKVQSVNRKT 58 Query: 101 ID-KIVGKEAVHQGLA--LETAPLLSP-----TLD--AVRNSQ-LLMVLDHVNDPHNIGA 149 +D K G HQG+ ++ AP L+ LD A + SQ L+VLD V DPHN+GA Sbjct: 59 LDDKAEGNN--HQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGA 116 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 LRSA A +I + + + ++ K A GA E +P I+++NL L+++ G Sbjct: 117 CLRSADAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWI 176 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ L Q +AL++GAEGKG+R T+E + + M G + +LNVS A Sbjct: 177 VGTAGEADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVAT 236 Query: 270 AVALY 274 V L+ Sbjct: 237 GVCLF 241 >gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] Length = 268 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + AP LD R L ++LD + DPHN+G+ILR+A A + DG++ Sbjct: 89 HQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLGSILRTAEACAVDGVV 148 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + + K+++GA E +P IR+ NL + + G++ +G ++ + Sbjct: 149 VPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYRVVGADTEGECDYTDV 208 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G EGKGL +E + H+ M G + +LN AA V LY Sbjct: 209 DYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVAAGVLLY 259 >gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1] Length = 234 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQGL LE + L P+L V+ L++LD + D NIGAI+RSA A D +I T Sbjct: 66 HQGLLLEISELEQPSLSDVKREDFLVILDGLTDVGNIGAIVRSAYALGADAVIATGVKQL 125 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK 228 + A+ A+++SGAL +P++ I N+ D ++H GF+ G + D+ + +E E K Sbjct: 126 NFEAI-ARTSSGALLDMPFLLIPNILDVCNELHQVGFKLYGAAMEGDAVQLMEFERKR-- 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG+EGKGL K Q + + M +LNVS AAA+ ++ Sbjct: 183 -ALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAILIH 227 >gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC 796-83] gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 240 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 55 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 56 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 175 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 176 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233 >gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 255 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D SQ +M+LD + DPH Sbjct: 56 VQTVPKSKLDFL--SNAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPH 113 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 114 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G ++++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 174 GFWVAGTAANNATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 233 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 234 SVAASLMMY 242 >gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 360 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 205 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 264 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+Q + G+ IGL K + E + D + ++LG+EGKG+ T+E ++A Sbjct: 265 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 324 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 325 GIPISSAVESLNASVAAGISLYAVAN 350 >gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittGG] gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG] Length = 246 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + L++VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S ++++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia proteamaculans 568] gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia proteamaculans 568] Length = 243 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 28/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 D+ V + AVHQG+ P L ++D + L+VLD V DPHN+GA L Sbjct: 59 DEKV-EGAVHQGIIARVREGRQYQENDLPALLESVD----TPFLLVLDGVTDPHNLGACL 113 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A +I + S +A K A GA E++P IR++NL L+ + +G Sbjct: 114 RSADAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVG 173 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + Sbjct: 174 TAGEADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGI 233 Query: 272 ALY 274 L+ Sbjct: 234 CLF 236 >gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] Length = 248 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100 N F+YG+H V A L + + K R D D +P ++ + +T Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D + A HQG+ P L +D A S LL+VLD V DPHN+GA LR+A Sbjct: 59 LDD-KARGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 118 DAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237 >gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1] gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1] Length = 246 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 11/195 (5%) Query: 91 FPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPT----LDAVRNSQ--LLMVLDH 140 F + VP Q ++ + HQG+ AP + + LD V ++ LL++LD Sbjct: 44 FRARGVPIQFCERTAMDRMADGGAHQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDG 103 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAI+RSA AF +I K + +A K+++GA E + IR++NL A++ Sbjct: 104 VEDPHNLGAIMRSAEAFGALAVILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIE 163 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ IGL+ ++ PL + +AL++G EG GLR T+E +A + M G Sbjct: 164 QLQQRNVWVIGLAGEAGAPLIGTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGG 223 Query: 260 IKALNVSNAAAVALY 274 + +LNVS A VALY Sbjct: 224 VGSLNVSVATGVALY 238 >gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus helveticus H10] Length = 250 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 ++ VP +D++V HQGL L + LS LD + L++LD + DPH Sbjct: 54 IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K L++G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] Length = 250 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 ++ VP +D++V HQGL L + LS LD + L++LD + DPH Sbjct: 54 IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILRSA A DGII KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K L++G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 316 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++++ K H AKL R R+ RH + + + G + V L+ P Sbjct: 40 KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121 + ++ T+N RL ++ + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATTLYIAAGTRND-KRLSEAVSMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 122 LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + D + N+ + ++LD++ DP N+GA++RS AF DG+I +R S S +AV Sbjct: 146 YAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R +N+T +++ G+Q +GL + L+ E D + +++G Sbjct: 206 AWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ ET + + M G +++LN S AA L Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVL 304 >gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1] gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169] gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1] gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1] gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1] gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8] gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7] gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72] gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1] gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E] Length = 290 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 37/290 (12%) Query: 6 KKKSEKI--FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 KK+S+K S K S KL + H K ++P+N + YG+H VS + Sbjct: 2 KKRSQKTDNQSFKSSSKEKLNKPHHQAKP-----------AKPKNPYFYGIHAVSMLIKR 50 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVP----------PQTIDKIVGKEAVHQG 113 ++ L R D + H V++ + + ++ G + HQG Sbjct: 51 RPEEVLGLFIQ----LRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQ-HQG 105 Query: 114 LAL--ETAPLLSPT-LD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + TAP+ T LD +++ L +VLD + D HN+GA LR+A A D +I + Sbjct: 106 VVALARTAPMADETILDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQ 165 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKND 227 S + +AK + GA E IP I ++NL L+KM G G + D S KP + Sbjct: 166 SAPITPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGG 225 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNVSNAAAVALY 274 K+A+I+G+EG G+R TQ ++ ++ M ++ ++LNVS A + LY Sbjct: 226 KVAIIMGSEGDGMRRLTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLY 275 >gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] Length = 324 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 20/248 (8%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------P 92 +++ + +N +YG + V +AL + R + +L T +RL +D H Sbjct: 59 KNSEEQDNDLIYGRYPVLSALES-HRNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTV 113 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHN 146 + V P+ +D+I A HQG+A + AP L D + +Q +++V D + DPHN Sbjct: 114 IDEVDPKRLDQITNG-ANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHN 172 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A A G++ +R + ++ + K A+GALE+ R+ NL+ AL+++ G Sbjct: 173 LGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESG 232 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G ++ +PL L++G+EG+GL TQ++ + + + G +LN S Sbjct: 233 FWIYGTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNAS 292 Query: 267 NAAAVALY 274 A +ALY Sbjct: 293 VATGMALY 300 >gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] Length = 244 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103 +YG+H V A L ++ ++ K R + +AN V+ Q +D Sbjct: 4 IIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEAN---GIAVQVANRQWLDD 60 Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + AVHQG+ P L A ++ L+VLD V DPHN+GA LRSA A Sbjct: 61 KV-EGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 120 GVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] Length = 320 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 22/267 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 +H KL R RD + RH + G + V L+ P+ ++ T+ Sbjct: 48 AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHARVPATALYIAQGTR 98 Query: 76 NALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTL 126 N RL L H P+ VP +D + G +HQG+ L+ P L T+ Sbjct: 99 ND-DRLTEAVQLAHSRSIPLIEVPRIELDSMTGN-GLHQGVGLQIPPFEYADVFDLIGTV 156 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 157 ADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAAR 216 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P + +N+T L++ G+Q +GL + + + +++G+EGKGL +E Sbjct: 217 LPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVVGSEGKGLSRLVRE 276 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 T + + +++LN S AA V L Sbjct: 277 TCDVLVSVPTTSWVESLNASVAAGVVL 303 >gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13] Length = 249 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 V+ VP + ID++V E HQG+ A LD + RN ++LD + DPH Sbjct: 52 VQFVPRKKIDQMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPH 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + +A +AKS++GA+EHIP +R++NL + ++ Sbjct: 110 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKER 169 Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G +D+K ++ K D + LI+G+EGKG+ +E + L M G + + Sbjct: 170 GLWIFG--TDAKGTVDY-TKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTS 226 Query: 263 LNVSNAAAVALY 274 LN S AA++ +Y Sbjct: 227 LNASVAASLLMY 238 >gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] Length = 245 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 28/245 (11%) Query: 48 NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V A L+ +PSR ++F ++L N L+RL ++ + Sbjct: 3 NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLG--------VTLQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + +D K A HQGL P L LD N LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAKGASHQGLIARVKPGRQYNENDLDAILDGKENP-LLLVLDGVTDPHNLGA 112 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 LR+A A +I K S +A K A GA E +P +R++NL ++ + G Sbjct: 113 CLRNADAAGVCAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWF 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 173 VGTAGEATHDVYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVAT 232 Query: 270 AVALY 274 + L+ Sbjct: 233 GICLF 237 >gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 333 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ ++GL + E + D + ++LG+EG GL +ET S+A Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRETCDSIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317 >gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] Length = 333 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ ++GL + E + D + ++LG+EG GL +ET S+A Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRETCDSIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317 >gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 12/239 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTID 102 + EN+ +YG + V A+N R+I ++ +KNA + A V T T+D Sbjct: 3 ENENI-IYGRNPVLEAIN-SGREIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60 Query: 103 KIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155 K+ HQG+A L + D + ++ +++LD + D HN+GAI+R+A Sbjct: 61 KL-SNYGNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS GII KR S ++ + K+++GA E+I +++SN+ +A+ + G +G S D Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +A+++G+EGKG+ TQ+ +A + M G I +LN S AA++ +Y Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMY 238 >gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15] Length = 245 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106 F++G H V A L + Q+ + T R+ + VK V + +D+ V Sbjct: 5 FVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDERV- 63 Query: 107 KEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ T L L A L+VLD V DPHN+GA +R+A A Sbjct: 64 -SGVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S S + V K A GA E +P++R++NL L+ + G IG + ++ Sbjct: 123 QAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEADAT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 183 LYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLY 237 >gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68] gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp. longum F8] gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. longum JDM301] gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68] gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT AL+ + G+ +GL K + E ++D + ++LG+EG GL +ET ++A Sbjct: 237 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 296 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 297 GIPISSSVESLNASVAAGISLYAVSN 322 >gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] Length = 249 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105 +YG+H V A L ++I ++ K R L H V Q ++ Sbjct: 4 MIYGIHAVKALLERSPQRIKEVYILKGREDRRLMP--LVHEIEALGVVVQVANRQWMDSQ 61 Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+ + P P L +S L+VLD V DPHN+GA LRSA A Sbjct: 62 TEGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADHN 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium vanbaalenii PYR-1] Length = 314 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 12/187 (6%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHN 146 VP +D+I +HQG+AL+ P L DA+ LL+ LD+++DP N Sbjct: 121 VPRHDLDRIA-ANGMHQGIALQVPPYNYAHPDDLLAEAKSDAM--PALLVALDNISDPRN 177 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RS AF G++ +R S S +AV ++++GA P R +NLT AL++ G Sbjct: 178 LGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAG 237 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q +GL +D ++Q I +++G+EGKGL +E ++ + M G ++LN S Sbjct: 238 LQVVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNAS 297 Query: 267 NAAAVAL 273 AA V L Sbjct: 298 VAAGVVL 304 >gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] Length = 315 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 139/279 (49%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++I+ K H AKL R+ R+ RH + + + G + V L+ P Sbjct: 40 KAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + ++ + T+N RL + + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATTLYIVAGTRND-KRLSEAVAMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 123 SPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 +D A N++ + ++LD++ DP N+GA++RS AF DG+I +R S S +AV Sbjct: 146 YADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R +N+T +Q+ G+Q IGL + + L+ D + +++G Sbjct: 206 AWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ +E + + M +++LN S AA L Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVL 304 >gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 333 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 180 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 239 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT AL+ + G+ +GL K + E ++D + ++LG+EG GL +ET ++A Sbjct: 240 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 299 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 300 GIPISSSVESLNASVAAGISLYAVSN 325 >gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter uraniireducens Rf4] Length = 242 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+++V AL R +A + RL+ L PV+ + I ++ G Sbjct: 5 IIYGLNSVMEALRGKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIARLCGT 64 Query: 108 EAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 E HQG+AL P L + LL+VLD V DPHN+GA++RSA G+I Sbjct: 65 EH-HQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQGVII 123 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + +A + K+++GA+E IP ++N+ L+++ + GF G +S + + Sbjct: 124 PRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSIFDQK 183 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G+EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 184 LTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLF 233 >gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT AL+ + G+ +GL K + E ++D + ++LG+EG GL +ET ++A Sbjct: 237 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 296 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 297 GIPISSSVESLNASVAAGISLYAVSN 322 >gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 255 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 13/246 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATK-NALARLDWDANLPHPFPVKT 95 K ++ N F+ G H AAL + K+F K AL + A H + Sbjct: 2 KPVENNEENNDFVIGRHPAVAALRSQQTINKVFLQSGLKAEALDEIRQLAKKRH-LVISE 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148 VP Q +D + + HQG+AL + T+D A + +VLD V DPHN+G Sbjct: 61 VPKQKLDLLTDHQN-HQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + ++V+AK+++GA+E +P R++NL + ++++ G Sbjct: 120 SILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGVW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + K ALI+G EGKG+ +ET M + M G +++LN S A Sbjct: 180 VFGTDMAGTDYRDWDAKGAS-ALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASVA 238 Query: 269 AAVALY 274 A + +Y Sbjct: 239 AGLLMY 244 >gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 316 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++++ K H AKL R R+ RH + + + G + V L+ P Sbjct: 40 KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121 + ++ T+N RL ++ + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATTLYIAAGTRND-KRLSEAVSMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 122 LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + D + N+ + ++LD++ DP N+GA++RS AF DG+I +R S S +AV Sbjct: 146 YAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R +N+T +++ G+Q +GL + L+ E D + +++G Sbjct: 206 AWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ ET + + M G +++LN S AA L Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVL 304 >gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 102/185 (55%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ A RN + ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR S +A +AK+++GA+E+IP +R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ + + HL M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 249 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] Length = 243 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ A H ++ Q +D+ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDE-KS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 63 DGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 123 AVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 243 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 246 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N F+YG+H V A L +P+R I + L ++ + ++ + + +D Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDD- 61 Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P L LD A LL+VLD V DPHN+GA LR+A A Sbjct: 62 KAQGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237 >gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] Length = 246 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 +YG+H V A L+N ++ ++ K D P ++ Q Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGR------DDRRLQPLISELEAAGLVIQVASRQW 57 Query: 101 IDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D V + VHQG+ P L A + L+VLD V DPHN+GA LRSA Sbjct: 58 LDSQV-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + Sbjct: 117 DAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia coli AA86] gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] Length = 243 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERTPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185] gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185] Length = 243 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] Length = 248 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 100 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 159 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L ++ +G S D+ L Q +AL+LGAEG+G+R T++T + Sbjct: 160 NLARTLNELKERSIWCVGTSDDAPGTLYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVS 219 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 220 IPMAGAVESLNVSVASGVCLY 240 >gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] Length = 169 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 16 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 75 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT AL+ + G+ +GL K + E ++D + ++LG+EG GL +ET ++A Sbjct: 76 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 135 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LN S AA ++LY N Sbjct: 136 GIPISSSVESLNASVAAGISLYAVSN 161 >gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC 73102] Length = 363 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 24/261 (9%) Query: 31 KKMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++ +F+Q S ++QP +N +YG H V +AL R + ++ T RL +D + Sbjct: 87 QRNSNFSQ-SPVSTQPIEEDNDIIYGRHPVLSALQK-QRNLNRIWIT----TRLRYDPSF 140 Query: 88 PHPF--------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ----- 133 H + V P+ +D + A HQG+A +TAP L D + S+ Sbjct: 141 HHFLLQAKENGTVIDEVEPKRLDYLTNG-ANHQGVAAQTAPYGYIELADLIEQSKSVTDP 199 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++V D + DPHN+GAI+R+A A G++ +R + ++ + K A+GALE+ R+ Sbjct: 200 VIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFTVSRVV 259 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ AL+++ GF G ++ +P+ I L++G+EG+GL TQ + + Sbjct: 260 NLSRALEELKEAGFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGMLTQRSCDFLVS 319 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G +LN S AA +ALY Sbjct: 320 IPLQGKTPSLNASVAAGMALY 340 >gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 251 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+ VP Q I+K+V VHQG+A + A LD + N+ ++LD + DPH Sbjct: 54 VQFVPKQKIEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] Length = 247 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ ++ A L+ + A + LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKAHG--ANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 301] gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei Ss046] gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli E24377A] gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS] gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SMS-3-5] gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9] gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354] gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088] gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli H736] gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli CFT073] gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655] gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T] gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli UTI89] gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli 536] gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS] gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E24377A] gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC 8739] gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli SMS-3-5] gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli] gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989] gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1] gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88] gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39] gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a] gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026] gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82] gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of 23S rRNA 2'-O-ribose G2251 methyltransferase [Escherichia coli BL21(DE3)] gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str. REL606] gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1] gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15] gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella flexneri 2002017] gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042] gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088] gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354] gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli IHE3034] gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972] gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UM146] gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W] gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli DH1] gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 85-1] gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 110-3] gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 153-1] gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 16-3] gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC 9905] gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli WV_060327] gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli EC4100B] gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11] gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520] gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482] gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120] gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252] gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263] gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489] gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863] gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007] gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 57-2] gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 60-1] gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 117-3] gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167] gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. 1044] gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71] gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] Length = 243 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] Length = 262 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 24/241 (9%) Query: 50 FLYGVH-------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 F++G H T A+L N KIF + ++A + V++VP +D Sbjct: 14 FVFGRHAGLDFLRTQDASLIN---KIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLD 70 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVA 156 K+V ++ HQGL L P L+ + S L++LD + DPHN+G+ILR+A A Sbjct: 71 KLVDQQN-HQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADA 129 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLS 213 DGII +R + ++V+AK+++GA++++P +R++NL D L+ W F T +S Sbjct: 130 TGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGT-AMS 188 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + K L++G EGKG+ P + + M G +++LN A + L Sbjct: 189 GDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 245 Query: 274 Y 274 Y Sbjct: 246 Y 246 >gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 298 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 27/274 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIF--QLL 72 D + R R ++M+ + T+Q E F++G H AL + K++ L Sbjct: 27 DRRFNDRDRQPRQKREMRVEAEAVDDTAQTE--FVFGHHASVEALKGETEINKVWLQSGL 84 Query: 73 ATK-----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 A K ALA+ ++ P +D++ + HQG+ L A T+D Sbjct: 85 ADKIRNEVMALAK-------KRGLIIQDAPKAKLDELTNGQN-HQGVVLSIAAYAYATID 136 Query: 128 -----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A S+ +VLD + DPHN+G+ILR+A A GII KR + ++V+AK++ Sbjct: 137 DLFAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTS 196 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GA+EH+P R++NL ++++ G G D K + ALI+G EGKG+ Sbjct: 197 TGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGKDYRRWDAAG-PTALIIGNEGKGI 255 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P ++T + M G +++LN S AA++ +Y Sbjct: 256 SPLLKKTVDETLTIPMVGHVQSLNASVAASLLIY 289 >gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1] gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] Length = 258 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 24/241 (9%) Query: 50 FLYGVH-------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 F++G H T A+L N KIF + ++A + V++VP +D Sbjct: 10 FVFGRHAGLDFLRTQDASLIN---KIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLD 66 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVA 156 K+V ++ HQGL L P L+ + S L++LD + DPHN+G+ILR+A A Sbjct: 67 KLVDQQN-HQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADA 125 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLS 213 DGII +R + ++V+AK+++GA++++P +R++NL D L+ W F T +S Sbjct: 126 TGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGT-AMS 184 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + K L++G EGKG+ P + + M G +++LN A + L Sbjct: 185 GDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 241 Query: 274 Y 274 Y Sbjct: 242 Y 242 >gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] Length = 252 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 105/188 (55%), Gaps = 7/188 (3%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHN 146 + VP + +D++V K+ HQG+ + A +D + +N Q ++LD + DPHN Sbjct: 53 QIVPKKKLDQMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHN 112 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+ILR+A A GII KR S + +AK+++GA+EH+P R++NL + ++ G Sbjct: 113 LGSILRTADAVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEG 172 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +G + ++ + + + L++G+EG+G+ +E + + + G + +LN S Sbjct: 173 LWFVGTDAKGEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNAS 232 Query: 267 NAAAVALY 274 AA++ +Y Sbjct: 233 VAASLLMY 240 >gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905] gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905] Length = 250 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ A HQG+ A L+ + + ++LD + DPH Sbjct: 53 VQFVPKKKVDQL--SSANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKER 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G +D+K ++ K D +A+I+G+EGKG+ +E + HL M G + + Sbjct: 171 GVWIAG--TDAKGSVDYR-KMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTS 227 Query: 263 LNVSNAAAVALY 274 LN S AAA+ +Y Sbjct: 228 LNASVAAALLMY 239 >gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLF 236 >gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23 rrna gm2251 2'-o-methyltransferase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus asymbiotica] Length = 245 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFP-----VKTVPPQTIDK 103 +YG+H V A L+ ++ ++ K R D N L H V+ Q +D Sbjct: 4 IIYGIHAVKALLDRDPQRFMEVYVLK---GREDRRLNPLIHELENIGVTVQLANRQWLDN 60 Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 61 QT-EGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A K A GA E +P +R++NL L+ + +G + ++ Sbjct: 120 GVHVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLF 236 >gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 249 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V++VP ID + ++ HQG+A AP DA Q +++LD + DPH Sbjct: 50 VQSVPKSKIDGL--SDSPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA++HIP +R++NL + ++ + Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ +G +++ + + +++G+EG+G+ +E ++ M G + +LN Sbjct: 168 GYWIVGTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC H10407] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 IIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 315 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++I+ K H AKL R+ R+ RH + + + G + V L+ P Sbjct: 40 KAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + ++ + T+N RL + + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATTLYIVAGTRND-KRLSEAVAMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 123 SPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 +D A N++ + ++LD++ DP N+GA++RS AF DG+I +R S S +AV Sbjct: 146 YADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R +N+T +Q+ G+Q +GL + + L+ D + +++G Sbjct: 206 AWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ +E + + M +++LN S AA L Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVL 304 >gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 245 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 12/192 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPH 145 P+K V + +D+I E HQG+A T P +++ + S +++LD + DPH Sbjct: 48 IPIKNVDKKKLDEISEGEN-HQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPH 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N GAI+R+A F DGII KR S + ++ KS+ GA+EH+ +++N+ D L++ Sbjct: 107 NFGAIIRTAEVFGVDGIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKEN 166 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + W + G + + + E IAL++G+EGKG+ T+E + + M G I + Sbjct: 167 NIWIY---GADMATDRYIYSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINS 223 Query: 263 LNVSNAAAVALY 274 LN S A + +Y Sbjct: 224 LNASVAGGIVMY 235 >gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 255 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. 1125] gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] Length = 240 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 55 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 56 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 175 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 176 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233 >gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 312 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPHPFPVKT 95 S T PE +YG HTV AAL N + L + L +A V Sbjct: 46 SAETEPPEEDLIYGRHTVLAALENGRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VDG 104 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNIG 148 Q +D+I + A HQG+ + P L+ + + NSQ +L+ +D + DPHN+G Sbjct: 105 ASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLG 163 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A A G+I +R + +A + K A+GALE P R+ NL ++ S GF Sbjct: 164 AIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFTELKSAGFW 223 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + +PL + + I L++G+EG+GL E + + + G+ +LNVS A Sbjct: 224 IYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVA 283 Query: 269 AAVALY 274 +ALY Sbjct: 284 TGMALY 289 >gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae Sd197] gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q + Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQVASRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 248 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 11/198 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVND 143 PV+TV + +DK+ K HQG+A AP+ TLD V +N + +++LD + D Sbjct: 51 VPVETVKAEKLDKLA-KGLRHQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQD 109 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RSA A G++ +R S +AV+AK ++GA+E++P ++I N+ ++++ Sbjct: 110 PQNVGALIRSADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEELK 169 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +G D + I L++GAEG+GL ++ + + M G + +L Sbjct: 170 QRGCWVVGADMDGVDFYAANMSG-PIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSL 228 Query: 264 NVSNAAAVALY--ITQNH 279 N S A AV +Y + Q H Sbjct: 229 NASAAGAVLMYEVVRQRH 246 >gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402] gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 263 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 106/188 (56%), Gaps = 8/188 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHN 146 V+TVP +D + + HQG+ +P L+ +++ +M+LD + DPHN Sbjct: 68 VQTVPKSKLDHL--SDVPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHN 125 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+I+R+A A DGI+ KR S S + + K+++GA+EH+P +R++N+ A+ K+ G Sbjct: 126 LGSIIRTADAIGIDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAG 185 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G + + + +A+++G+EG+G+ +E + HL M G + +LN S Sbjct: 186 YWVAGTDAKQSVDYRKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNAS 245 Query: 267 NAAAVALY 274 AA++ +Y Sbjct: 246 VAASLLMY 253 >gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ECD227] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] Length = 247 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV-----RNSQ-LLMVLDHVNDPH 145 V+ VP + ID++ + HQG LAL A + T D RN +++LD + DPH Sbjct: 50 VQFVPKKKIDQVA--DGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A G+I KR S + +A +AK+++GA+EHIP R++NL+ + + Sbjct: 108 NLGSILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQ 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + Q + + L++G+EGKG+ +E + L M G + +LN Sbjct: 168 GLWIAGTDASGTTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNA 227 Query: 266 SNAAAVALY 274 S AA + +Y Sbjct: 228 SVAAGLLMY 236 >gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 243 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R +F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 330 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 16/238 (6%) Query: 50 FLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G ++V AL P+ ++ Q L T + + R + A P+ P +D++ Sbjct: 87 LVVGRNSVVEALQGGVPATALYVQQFLDTDDRV-RDAFQAANERGVPLMEAPRAQLDQMT 145 Query: 106 GKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G HQGL L+ P LL DA +++ L++ LD V D N+GA++RSA AF Sbjct: 146 GG-LNHQGLVLQVPPYEYAHPDDLLEGAADAGQDA-LIVALDGVTDSRNLGAVVRSAAAF 203 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ +R + +A K++SGA +P R +NLT AL+ G +GL++D + Sbjct: 204 GAHGVVIPERRAAGMTAGAWKTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGE 263 Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + N + ++ G+EGKGL ET + + MPG ++LN AA + LY Sbjct: 264 AEIGDLDALNGPVVIVAGSEGKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLY 321 >gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca] Length = 307 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPHPFPVKT 95 S T PE +YG HTV AAL N + L + L +A V Sbjct: 46 SAETEPPEEDLIYGRHTVLAALENGRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VDG 104 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNIG 148 Q +D+I + A HQG+ + P L+ + + NSQ +L+ +D + DPHN+G Sbjct: 105 ASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLG 163 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A A G+I +R + +A + K A+GALE P R+ NL ++ S GF Sbjct: 164 AIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFTELKSAGFW 223 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + +PL + + I L++G+EG+GL E + + + G+ +LNVS A Sbjct: 224 IYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVA 283 Query: 269 AAVALY 274 +ALY Sbjct: 284 TGMALY 289 >gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] Length = 246 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H+V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L + L+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4] gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter arcticus 273-4] Length = 256 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 14/176 (7%) Query: 111 HQGLALETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ L PL L TL A R LL+VLD + D HN GA LR+AVA D +I Sbjct: 70 HQGVVLNARPLGFADEGLLDTL-AGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAVIC 128 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQ 222 K ++ S + +AK + GA E +P + ++NL L K+ + G G L++D+ KPL Sbjct: 129 PKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADA-KPLHT 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 KIA+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 188 ADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALY 243 >gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 243 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 246 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H+V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L + L+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] Length = 240 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 55 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 56 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 175 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 176 DHTLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233 >gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] Length = 245 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP + +D++V E HQG+ + A +D + R S+ ++LD + DPH Sbjct: 48 VQYVPKKKLDQMV--EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPH 105 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S +A +AK+++GA+E++P R++NL + ++ Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKER 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + +K +AL++G+EGKG+ E + HL M G + +LN Sbjct: 166 GVWIVGTDAKAKDDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNA 225 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 226 SVAASLLMY 234 >gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 268 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 21/258 (8%) Query: 32 KMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDW 83 K Q+ ++ +H Q EN F+YG H AL + L T +N LA L Sbjct: 7 KKQAGGKRQQHEPQGENQAEFVYGHHAAVEALKGQTEINKVWLQTGLADKARNELASLAK 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLM 136 L ++ P +D++ E HQG+ L A T+D + + + Sbjct: 67 KRGLV----MQDAPKAKLDELTNGEN-HQGVVLSIAAYAYVTIDDLFAKAAEKDEAPFFL 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+G+I+R+A A GII KR + ++V+AK+++GA+EH+P R++NL Sbjct: 122 VLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLV 181 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ++++ G G + + ALI+G EGKG+ P +++ + M Sbjct: 182 QTVEQLKERGVWVFGTDMNGNDYRRWD-ATGATALIIGNEGKGISPLLKKSVDETLTIPM 240 Query: 257 PGIIKALNVSNAAAVALY 274 G +++LN S AA++ +Y Sbjct: 241 IGHVQSLNASVAASLLIY 258 >gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] Length = 248 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 15/238 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105 +YG+H+V +AL+ +KI + + ++ RL L + P+ +D+ Sbjct: 6 IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRL---TQLIDDLLDLGIEPEKVDRKKLDRF 62 Query: 106 GKEAVHQGLALET---APLLSPTL-DAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ +E L L DAV + L +VLD+V DPHN GA LR+A A Sbjct: 63 AEGNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I TK + + + K ASGA E +P +++NL+ L+ + G +G + ++ + Sbjct: 123 VHGVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q +AL++GAEGKGLR T+E + L M G +++LN+S A V LY T Sbjct: 183 TAYQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYET 240 >gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R +F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 248 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 14/242 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP-TLDAV--RNSQ-LLMVLDHVNDPHNIGAILRSA 154 ++K+ G HQG+ A+ P+L+ LD + N Q LL+ LD V DPHN+GA +R+A Sbjct: 60 LEKLAGL-PFHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLS 213 A +I + S S + K A+G E + +I+++NL L + + F + +G Sbjct: 119 AAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTM 178 Query: 214 SDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D K P+++ + +A+++GAE GLRP TQ ++ M G +++LNVS AA +A Sbjct: 179 LDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMA 238 Query: 273 LY 274 LY Sbjct: 239 LY 240 >gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ A H ++ Q +D+ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDE-KS 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 63 DGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 123 AVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 249 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 133/242 (54%), Gaps = 21/242 (8%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 PE F+ G H AAL + K+F Q +A+A++ A H + VP +D Sbjct: 6 PE--FVIGRHPAVAALKSDQEINKVFIQKGLRTDAIAQIIKLAKERH-LVISNVPKTKLD 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAILRSAV 155 ++V + HQG+AL A T+D + N+Q L++LD + DPHN+G+I+R+A Sbjct: 63 QMVDHQN-HQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGL 212 A GII KR + ++V+AK+++GA+E +P R++NL +++ + W F T Sbjct: 122 AAGVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLVQTAKELKARGVWLFGTDMQ 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D ++ Q +A+++G EGKG+ P ++T M + M G +++LN S AA++ Sbjct: 182 GTDYRRWDAQ----GAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLL 237 Query: 273 LY 274 +Y Sbjct: 238 IY 239 >gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R +F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 246 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L +P R I + + RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 295 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 ++ VP +D + ++ HQG+ L AP ++D A +++LD++ DPH Sbjct: 99 IQNVPKNKLDLLSDRQN-HQGIILAIAPFEYASVDDIFAKAKAQEEEPFILILDNLEDPH 157 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII K + ++ +AK+++GA+EHIP R++NLT ++K+ Sbjct: 158 NLGSIMRTADAVGVHGIIIPKHRAVGLTSTVAKTSTGAIEHIPVARVTNLTQEIKKLKDR 217 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + K I LI+G EGKGL P ++ + M G +++LN Sbjct: 218 GLWIFGTDMAGTDYRKWDAKG-PIGLIIGNEGKGLSPIVKKEVDQTLTIPMVGHVQSLNA 276 Query: 266 SNAAAVALYITQN 278 S AA V +Y N Sbjct: 277 SVAAGVLMYQAYN 289 >gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D+ V + AVHQG+ L L+ + ++ L+VLD V DPHN+GA LRSA Sbjct: 59 DEKV-EGAVHQGIIARVREGRQYQENDLPGLLEGI-DTPFLLVLDGVTDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + S +A K A GA E++P IR++NL L+ + +G + Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 177 EADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLF 236 >gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] Length = 289 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP+ L+ A + L++LD + DPHN+GA+LR+A A GI+ Sbjct: 108 HQGVLAYVAPVPYAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGIL 167 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S S +A +AK+++GA+E++P RI N+ L+K+ GF G D +K + Sbjct: 168 IPKRRSVSLNATVAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEA 227 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G+EGKG+ T+E + + M G I +LN S A ++ +Y Sbjct: 228 DLTGPLVLVVGSEGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMY 278 >gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] Length = 261 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 7/190 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL--LMVLDHVNDP 144 P + V + +DK + HQG+AL + L+ + + +L +++LD + DP Sbjct: 63 IPTQRVSRKELDKCC-MDTHHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA+LR+ A DG+I K S S ++ +AK ++GA+E +P ++NLT L+++ Sbjct: 122 HNLGAVLRTCDAVGADGVILRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKE 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ G + + Q + +AL++G+EGKG+ +E M L M G I +LN Sbjct: 182 KGYWVYGTDMRNAQDYRQPAFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLN 241 Query: 265 VSNAAAVALY 274 S A AV LY Sbjct: 242 ASVACAVLLY 251 >gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL N1-067] Length = 251 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 109/192 (56%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+ VP Q I+K+V VHQG+A + A LD + N+ ++LD + DPH Sbjct: 54 VQFVPKQKIEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR + + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866] Length = 246 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A + LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + H+ +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 255 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + G + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 GVAG-QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 249 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-3-3Ab] Length = 354 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 25/248 (10%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQT 100 ++PE +YG TV AAL + AT N L RL + Sbjct: 90 AEPEQEIIYGRQTVLAALRS--------QATLNRVWVLPRLRYSPQFWSLLEEAKARGTV 141 Query: 101 IDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRNS---QLLMVLDHVNDPHN 146 ID++ + A HQG+A + P L ++ R S +L+VLD + DPHN Sbjct: 142 IDEVSLQRLNLLTAGANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHN 201 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RS AF G++ +R + +A + K A+GAL +P R+ NL AL+ + G Sbjct: 202 LGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQG 261 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G +S P+ IAL++G+EG+G+ TQ + + + G ++LN S Sbjct: 262 FWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNAS 321 Query: 267 NAAAVALY 274 AA +ALY Sbjct: 322 VAAGIALY 329 >gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] Length = 313 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 20/266 (7%) Query: 24 RRNHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 RRN + + ++ SQ E +YG H V AL +R+I ++ +++L Sbjct: 27 RRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALEG-TRQINRIWV----ISKLR 81 Query: 83 WDANLPHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRN 131 +D+ ID++ + A HQG+ + +P L ++ R Sbjct: 82 YDSRFHSLLTQAKANGTVIDEVSPHRLTQLTDGANHQGIVAQVSPYTYVELGDLIEQARA 141 Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S ++++ D + DPHN+GAI+R+ A G++ +R + ++ + K A+GALEH+P Sbjct: 142 STPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLP 201 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ NL+ AL+++ GF G S K L + + L++G+EG+GL TQ Sbjct: 202 VARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRCC 261 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + G +LN S AAA+ALY Sbjct: 262 DALISIPLAGKTPSLNASVAAAIALY 287 >gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] Length = 526 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 37/255 (14%) Query: 43 TSQPENLFLYGVHTVSAALNN--------------PSRKIFQLLATKNALARLDWDANLP 88 +S+ E ++G H+ AAL + S K QLL A + L Sbjct: 185 SSETEKDLIWGRHSTQAALESGRPIHRIWCTSEVKSSSKFLQLLKKVKASSVL------- 237 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLD 139 V+ V + +++G HQG+AL+ A + TLD + + LLM ++ Sbjct: 238 ----VEEVSWARLGQLIGGSG-HQGIALQMAAV--ETLDLTKLIEDCCHLGENPLLMAVE 290 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAI+RSA A G+I +R + + +AK A+GALEH+P R+ NL +L Sbjct: 291 GLTDPHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSL 350 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G++ +GL+++ L + N + ++ G+EG GL T+ + + + G Sbjct: 351 DILKDKGYRIVGLATEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGA 410 Query: 260 IKALNVSNAAAVALY 274 +LN S A+A+ LY Sbjct: 411 TPSLNASVASALMLY 425 >gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 7/171 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG L + LD + ++ LL++LD + DPHN G+ILR+A A G+ Sbjct: 71 AVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G + + P + Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ + Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILM 240 >gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] Length = 243 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R +F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLF 236 >gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] Length = 246 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 28/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELE-----AAGLVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 D V + VHQG+ P L ++D L+VLD V DPHN+GA L Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVDM----PFLLVLDGVTDPHNLGACL 113 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A +I + S +A+ K ASGA E++P I+++NL L+ + +G Sbjct: 114 RSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVG 173 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V Sbjct: 174 TAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGV 233 Query: 272 ALY 274 L+ Sbjct: 234 CLF 236 >gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 247 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + N + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 249 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 247 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 26/242 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102 +YG H++ A L + + ++ +N +L + A L F + Q +D Sbjct: 4 IIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSAGLSILFTSR----QYLD 59 Query: 103 KIVGKEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 G VHQG+ + P L +LD + ++VLD + DPHN+GA LR Sbjct: 60 AQTGG-GVHQGIMAKVCSAHQYQENELPALLNSLD----TPFVLVLDGITDPHNLGACLR 114 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A +I + S +A + K+ASGA E+IP IR++NL L+ + + IG Sbjct: 115 SAEASGVQIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGT 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++KK + + +AL++G+E KGLR T+E + + M G + +LNVS A V Sbjct: 175 AGEAKKTVYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVC 234 Query: 273 LY 274 L+ Sbjct: 235 LF 236 >gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102 +YG+H V A L+ ++ ++ K L R D + V+ Q +D Sbjct: 4 IIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDIGIT----VQLANRQWLD 59 Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ + P P + + L+VLD V DPHN+GA LR+A A Sbjct: 60 TQT-ESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 119 AGVDAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 179 THSLYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] Length = 236 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 83/140 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD V DP N GAI+RSA F GII +R S + + K+++GA+EH+ I+++ Sbjct: 89 IVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPERNSVKINETVVKTSTGAIEHVDIIKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+++A+QK+ + G KK E ++ AL++G EG G+R K +E + + Sbjct: 149 NISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYPNRTALVMGGEGSGIRKKVKENCDILVN 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A + L Sbjct: 209 IPMYGKINSLNVSVAGGILL 228 >gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A L L L+ + LL+VLD V DPHN+GA LR A AF ++ Sbjct: 69 HQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 129 KDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLDSVTL 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A +LGAE G+R T+E + + M G I++LNVS +A + L+ T Sbjct: 189 TRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFET 239 >gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] Length = 253 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%) Query: 50 FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++YG+H V AL ++ FQ RL + + VP + +D++ Sbjct: 6 WVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRL-MQLCKKNGVRFQVVPRKVLDQLF 64 Query: 106 GK---EAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K VHQG+ + L ++A+ + L+++LD + DPHN+GA LRSA Sbjct: 65 AKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLRSAD 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S +A ++K A GA E +P ++NL ++K+ G G + + Sbjct: 125 AAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGTAGE 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L A+++GAEG G+R T+E + L M G++ +LNVS A V LY Sbjct: 185 ATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLY 243 >gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] Length = 251 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+VG HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] Length = 252 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 7 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 65 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 66 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 125 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 185 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 243 >gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sulfurreducens PCA] gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter sulfurreducens KN400] Length = 245 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKI 104 LYG+++V AL SR+ F+L ++ R L + A PV+T + + ++ Sbjct: 5 ILYGINSVMEALRG-SRRAFELFVSRETHDRRTEKLLAFAAE--RGVPVRTRDKRDLARL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+AL L+ + S L++VLD + DPHN+GA++RSA Sbjct: 62 CGTDH-HQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAACA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I + + +A + K ++GA E IP +++N+ AL+ + GF G + + Sbjct: 121 GAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSAA 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +++G EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 181 SSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLF 237 >gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] Length = 246 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 6/189 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV+ V ++KI EAVHQG+A E L A +++LD + DPH Sbjct: 50 IPVQEVDRTALEKI-SAEAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G++ T+R S + V+AKS++GA+E++P R++NL +++ + Sbjct: 109 NLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQEN 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + K + + IA+++G EGKGL +E + L M G I +LN Sbjct: 169 GIWVAGADMEGDKVYWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNA 228 Query: 266 SNAAAVALY 274 S A A+ Y Sbjct: 229 SVATALLAY 237 >gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] Length = 247 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ ++ A L+ +D + S LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKANG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 261 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q +D++ A HQG+A+ A T+D A + ++LD++ DPH Sbjct: 64 VQYVPKQKLDRLT-DNANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPH 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ Sbjct: 123 NLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEA 182 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + Q + + LI+G EGKG+ P +++ M + M G +++LN Sbjct: 183 GLWIFGTDMNGTD-YRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNA 241 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 242 SVAASLLIY 250 >gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] Length = 304 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-----LATKNALARLDWDANLPHPFPVK 94 S T PE +YG HTV AAL N R + ++ L + L +A V Sbjct: 46 SAETEPPEEDLIYGRHTVLAALEN-GRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VD 103 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNI 147 Q +D+I + A HQG+ + P L+ + + NSQ +L+ +D + DPHN+ Sbjct: 104 GASYQRLDQIT-RGANHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNL 162 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A A G+I +R + +A + K A+GALE P R+ NL +L ++ S GF Sbjct: 163 GAIVRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRSLTELKSAGF 222 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + +PL I L++G+EG+GL E + + + G I +LNVS Sbjct: 223 WIYGTVAGEFQPLYNANLTGAIVLVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSV 282 Query: 268 AAAVALY 274 A +ALY Sbjct: 283 ATGMALY 289 >gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKE 108 +YG+H V A L + + K R D L H + V Q ++ E Sbjct: 4 MIYGIHAVQALLERAPERFQEAFILKG---REDKRLLPLIHALESQGVVIQLANRQYLDE 60 Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 61 KSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 235 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + + A+ RKI+QL + L H + V + + + K+ Sbjct: 1 MIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQ 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A LD +S Q ++LD +NDPHN+GAILR+ A + DG+I + Sbjct: 59 KTHQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMS 118 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K+ ++ +AK + GALE+ ++NL + K+ +G S+S + Q K Sbjct: 119 KKNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPK 178 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N + +I+G EG G+R ++ + + M G I +LNVS AAA+ +Y T Sbjct: 179 NSSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIYST 229 >gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] Length = 324 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 44/285 (15%) Query: 21 AKLRRNHRDYKKMQ--------------SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 A+ R NH+ YK Q S ++ R +S+ + G ++V AL Sbjct: 41 AEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSE----IIAGRNSVLEAL----- 91 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVK--------TVPPQTIDKIVGKEAVHQGLALET 118 ++ AT +R+D D + + P +D++ AVHQGLAL+ Sbjct: 92 RVGVPAATLYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLT-DGAVHQGLALQV 150 Query: 119 AP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P L+ P L + L++ LD + DP N+GAI+RS AF G++ +R S Sbjct: 151 PPYEYAHPSDLIDPELP---GTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSA 207 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKI 229 +A K+++GA IP + SNLT AL++ GF IGL D L E+ + + Sbjct: 208 GMTASAWKTSAGAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPL 267 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++G+EGKGL ET + + M +++LN A +V LY Sbjct: 268 VVVVGSEGKGLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLY 312 >gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] Length = 245 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP + +D++V E HQG+ + A +D + R S+ ++LD + DPH Sbjct: 48 VQYVPKKKLDQMV--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPH 105 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S +A +AK+++GA+E+IP R++NL + ++ Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKER 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + +K+ +AL++G+EGKG+ E + L M G + +LN Sbjct: 166 GVWIVGTDAKAKEDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNA 225 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 226 SVAASLLMY 234 >gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 243 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKE 108 +YG+H V A L + ++ K R D L H + V Q ++ E Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILK---GREDKRLMPLIHALEAQGVVIQLANRQYLDE 60 Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 61 KSEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP + +D++V E HQG+ + A +D + R S+ ++LD + DPH Sbjct: 48 VQYVPKKKLDQMV--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPH 105 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S +A +AK+++GA+E+IP R++NL + ++ Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKER 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + +K+ +AL++G+EGKG+ E + L M G + +LN Sbjct: 166 GVWIVGTDAKAKEDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNA 225 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 226 SVAASLLMY 234 >gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 246 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+ A Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] Length = 249 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP + +D+++G E HQG+ A +D + R ++ +VLD V DPH Sbjct: 50 VQHVPKRKLDQLIGHEN-HQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A G+I KR + + +AK+++GA+E++P +R++NL ++ + Sbjct: 109 NLGSILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKR 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G IG + + + IAL++G+EGKGL +E + + M G + +LN Sbjct: 169 GLWFIGTDAKGSEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNA 228 Query: 266 SNAAAVALY 274 S A ++ +Y Sbjct: 229 SVATSLLMY 237 >gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R +F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] Length = 340 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +VHQG+AL+TA + L+A+ + LL+ LD + DPHN+GA++RSA A G Sbjct: 36 SVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGAHG 95 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S + AK A+GA+EH+P R+ NL +L+K+ G++ IGL+++ L Sbjct: 96 LVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVTLM 155 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 156 DVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATAMCVY 208 >gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q +D++ A HQG+A+ A T+D A + ++LD++ DPH Sbjct: 58 VQYVPKQKLDRLT-DNANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPH 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ Sbjct: 117 NLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEA 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + Q + + LI+G EGKG+ P +++ M + M G +++LN Sbjct: 177 GLWIFGTDMNGTD-YRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNA 235 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 236 SVAASLLIY 244 >gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---MPLIHALEAQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA A Sbjct: 59 DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 249 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 10/190 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPH 145 V+ V Q +D+I A HQG+ + A ++ + N+Q +++LD + DPH Sbjct: 50 VQYVERQKLDQISESHA-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A DGII KR + +AV+AK+++GA+E++P ++SN++ + K+ Sbjct: 109 NLGSIIRTADAVGVDGIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEK 168 Query: 206 GFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G K+ E + K +AL++G EG G+ +E + L M G + +LN Sbjct: 169 GVWVAGADMKGKQLHFEADFKG-ALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLN 227 Query: 265 VSNAAAVALY 274 S AAAV +Y Sbjct: 228 ASVAAAVLMY 237 >gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 248 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + N + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sibiricum 255-15] Length = 254 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 32/245 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQL----------LATKNALARLDWDANLPHPFPVKTVPPQ 99 FLYG + V AL + R++ +L LA +A+A+ +A + + VP Sbjct: 11 FLYGRNPVLEALRS-GREMNKLFIQEGQQKGPLAVIHAMAK---EAGVQ----TQIVPRS 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 + + G + HQG+ A LD + + L+++LD + DPHN+G+ILR Sbjct: 63 KLHGLTGSDN-HQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII KR S + V+AK+++GA+EHIP +R++NLT ++ + G +G Sbjct: 122 TADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGT 181 Query: 213 ---SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 SD + L+ + + +++G+EGKG+ +E + HL M G + +LN S AA Sbjct: 182 DARESDDYRTLDGTM---PLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAA 238 Query: 270 AVALY 274 ++ LY Sbjct: 239 SLLLY 243 >gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] Length = 249 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D SQ +++LD + DPH Sbjct: 50 VQTVPKSKLDFL--SNAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKEN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G + + + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEASNATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] Length = 335 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 20/242 (8%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPP 98 +N +YG H V +AL N R + ++ T RL +D + + V Sbjct: 80 DNDIIYGRHPVLSALQN-QRGLNRIWVTP----RLRYDPRFHNLILQAKDNGAVIDEVDT 134 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152 + +D+I +A HQG+A + AP L + +++V D + DPHN+GAI+R Sbjct: 135 KRLDQIT-DQANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVADSITDPHNLGAIIR 193 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A G++ +R + ++ + K A+GALE+ P R+ NL AL+ + GF G Sbjct: 194 TAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRALEDLKEAGFWIYGT 253 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ +PL I L++G+EG+GL TQ + + + + G +LN S AA +A Sbjct: 254 AAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMA 313 Query: 273 LY 274 LY Sbjct: 314 LY 315 >gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida Fx1] Length = 248 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K T ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] Length = 254 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 7/230 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVG 106 +YG H V AL R ++++L + + PV+ VP + +D++ Sbjct: 10 LVYGRHAVKEALL-AGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPAEALDRLTA 68 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + VHQG +P +LD + + L+VL ++ DP N+GAILR+A A +G+I Sbjct: 69 R-GVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAAVGVEGVII 127 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R + +A K+++G EH+ R++NL L+ + GF +G +D+K L + Sbjct: 128 PSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADAKVSLWEAE 187 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N+ + +++G E GL + + + + LN S AAAV LY Sbjct: 188 WNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILY 237 >gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. G5101] Length = 243 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESLGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 251 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 14/238 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L ++ ++ K+ R A V+ Q +D V Sbjct: 4 MIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQVN 63 Query: 107 KEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E VHQG+ + L L A + LL++LD V DPHN+GA LRSA A Sbjct: 64 HE-VHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSADA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K +S +A + K ASGA E +P I ++NL L+ + +G + D+ Sbjct: 123 AGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAGDA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++G+EG+G+R T+E + + + G + +LNVS A V L+ Sbjct: 183 EQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLF 240 >gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] Length = 247 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L +P+R +++ L ++ A V+ Q +D Sbjct: 5 IIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQT- 63 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 64 EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL L+ + +G + ++ L Sbjct: 124 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 237 >gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] Length = 250 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 V++VP +D++V HQGL L + L LD L++LD + DPH Sbjct: 54 VQSVPKNKLDRLV-DGGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K LI+G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWFFGTDMAGVDYREWNAKG-KTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFP-----VKTVPPQTIDK 103 +YG+H V A L ++ ++ K R D L H ++ Q +D Sbjct: 4 IIYGIHAVKALLERDPQRFIEVYVLK---GREDRRLTPLIHALESIGMTIQLANRQWLDN 60 Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 61 QT-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A K A GA E +P IR++NL L+ + + +G + ++ Sbjct: 120 GVHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLF 236 >gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1] Length = 246 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 13/236 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG + V AL P+ ++ +++ ++A AR D V+ +P +D++V Sbjct: 1 MLLYGRNPVLEAL--PAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLV 58 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPHNIGAILRSAVAFS 158 G HQG+ E L T+D + + LLMVL D V DP N GAI+RSA Sbjct: 59 GTTQ-HQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLG 117 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + Sbjct: 118 AHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQ 177 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + K AL++GAEG+G+R +E + + + G +++LN S AA + LY Sbjct: 178 DVTRTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLY 233 >gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] Length = 248 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFL--STAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S S + +AK+++GA++H+P IR++NL + ++ S Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1] Length = 255 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 19/241 (7%) Query: 50 FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDK 103 ++YG+H V ALN +I FQ RL L V+ V + +D+ Sbjct: 6 WIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRL---MQLCKANKVRHSVVARRDLDQ 62 Query: 104 IVG---KEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + VHQG+ TA L + + + L+++LD V DPHN+GA LRS Sbjct: 63 LFTANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLRS 122 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A ++ K S +A ++K A GA E IP ++NL ++K+ G G + Sbjct: 123 ADAAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGTA 182 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + ++ A+++GAEG G+R T+E + L M G++ +LNVS A V L Sbjct: 183 GEATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCL 242 Query: 274 Y 274 Y Sbjct: 243 Y 243 >gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 174 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 233 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ ++GL + E + D + ++LG+EG GL +E S+A Sbjct: 234 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIA 293 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 294 GIPMSNMVESLNASVAAGITLY 315 >gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC 3083-94] gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC 3083-94] Length = 243 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALQERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] Length = 243 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K R D LP H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQVANRQFLD 59 Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 EKSEGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435] gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 249 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D SQ +++LD + DPH Sbjct: 50 VQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA++H+P +R++NL + ++ Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEH 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G +D+ + +A+++G+EG+G+ ++ + M G + +LN Sbjct: 168 GYWVAGAEADNATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] Length = 322 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 9/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143 P+ V +D++ G AVHQG+ LE P D + + L++ LD V D Sbjct: 120 IPMVEVSRDRLDQLTGG-AVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTD 178 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAI RSA AF GI+ R S ++ K+++G L +P R SNLT L+ Sbjct: 179 PRNLGAIARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYR 238 Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +GL D+K+ + + + + + L++G+EGKGL +ET +A + M +++ Sbjct: 239 KEGLFVVGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVES 298 Query: 263 LNVSNAAAVALY 274 LN AA +ALY Sbjct: 299 LNAGVAAGIALY 310 >gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] Length = 330 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ ++GL + E + D + ++LG+EG GL +E S+A Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317 >gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 239 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 11/233 (4%) Query: 49 LFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YGV+ V+ AL P KIF K+ L+ A VKT + + + Sbjct: 1 MVIYGVNPVAEALRAGYPIMKIFVEKNFKDREKVLE-TARQAGIKVVKTTKQKLTE--LA 57 Query: 107 KEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K HQG+ +E P AV + L+ LD + DPHN+GAI RSA AF G Sbjct: 58 KTTKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTG 117 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ + S + + +AK+++GAL ++P+ +++ AL++ G +GL + KPL Sbjct: 118 IVIPRDRSVTVTETVAKTSTGALFYVPFAVVNSFVTALREFKEMGGWLVGLEAGG-KPLS 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+ G+EG+GL T + + + M G + +LNVSNA A+ LY Sbjct: 177 KFEFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLY 229 >gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] Length = 275 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 19/239 (7%) Query: 50 FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+YG H L N K+F + A + V+ P +D++V Sbjct: 8 FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 68 NHEN-HQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATG 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSD 215 D +I KR + ++V+AK+++GA++++P R++NL T L+K W F T D Sbjct: 127 VDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEGED 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 187 YRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] Length = 245 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105 +YG+H V A L ++I ++ K R + H + Q ++ Sbjct: 4 IIYGIHAVKALLERSPQRIKEVYILKGREDRRLMP--IVHEIEALGIVVQVANRQWMDAQ 61 Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + AVHQG+ P P L S L++LD V DPHN+GA LRSA A Sbjct: 62 TEGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADHN 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666] Length = 264 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 117 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVT 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L ++ IG S D+ K + +AL+LGAEG+G+R T++T + Sbjct: 177 NLARTLGELKERNIWCIGTSDDAPKTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVS 236 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 237 IPMRGAVESLNVSVASGVCLY 257 >gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittEE] gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE] gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301] Length = 251 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + ++L ++ + AR+ + V+T V +D + G Sbjct: 6 ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65 Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P+ + + S L ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G IG + D+ Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + IA++LGAEG G+R T ET ++ + M G +++LNVS A+ + LY Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLY 240 >gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] Length = 250 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +N A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLNTI-A 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G D + L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A ++G EG G+R T+E ++ + M G ++++N+S +A + + T+ Sbjct: 185 HYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETR 240 >gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum DSM 180] Length = 247 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 84/153 (54%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+ LD + L++LD V DPHN+GA LR+A A +I K + + V+ K AS Sbjct: 87 LAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQAVIAPKDNAVGLTPVVCKVAS 146 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA E +PY++++NL + + G IG + ++ L + L++GAEG GLR Sbjct: 147 GAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDELYAADLTGPLGLVMGAEGSGLR 206 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+E + L M G +++LNVS AA V LY Sbjct: 207 RLTRERCDRLVRLPMCGQVESLNVSVAAGVCLY 239 >gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7425] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 18/248 (7%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 ++ ++ ++ +YG HT+ AAL + R++ ++ +L +D Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVN----QLRYDPRFHSLLLQAKAAGV 172 Query: 100 TIDKI-------VGKEAVHQGLALETAPLLSPTLDAV-RNSQ-----LLMVLDHVNDPHN 146 ID++ + A HQG+A + AP LD + N Q +L+ D + DPHN Sbjct: 173 VIDEVDYLRLDQITAHAKHQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHN 232 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A A G++ +R + ++ +AK A+GALEH R+ NL AL+++ + G Sbjct: 233 LGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAG 292 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G+++ + KP+ + + L++GAEG GL Q + + + G +LN S Sbjct: 293 FWIYGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNAS 352 Query: 267 NAAAVALY 274 A +ALY Sbjct: 353 VATGMALY 360 >gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] Length = 245 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 315 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 28/290 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++++ K H AKL R R+ RH + + + G + V L+ P Sbjct: 40 KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVVECLHAKVP 87 Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121 + ++ + T+N ARL + + P+ + +D++ G +HQG+ L+ P Sbjct: 88 ATSLYIVQGTRND-ARLSEAVAIANSRNIPILEIQRHEMDRMTGN-GMHQGIGLQIPPYK 145 Query: 122 ---LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 +D +++ + ++LD++ DP N+GA++RS AF G+I +R S S +AV Sbjct: 146 YADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILG 234 ++++G +P R++N+T +Q+ G+Q +GL + + L+ D + +++G Sbjct: 206 AWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +EGKG+ +E + + M +++LN S AA L + Q AK Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315 >gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 11/188 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP Q +D++ VHQGLA++ P LL DA L++ LD V DP N+ Sbjct: 127 VPRQELDRLT-SNGVHQGLAIQIPPYEYAHPDDLLRAAYDA-DQVPLIVALDGVTDPRNL 184 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA AF G++ +R + S SA K+++GA IP R +NL AL+ G Sbjct: 185 GAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALKSYKDAGL 244 Query: 208 QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IGL D + L + + D I L++G+EGKGL +E + + M ++LN Sbjct: 245 FVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSATESLNAG 304 Query: 267 NAAAVALY 274 A VALY Sbjct: 305 IATGVALY 312 >gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] Length = 246 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ P+ S LD++ L+VLD V DPHN+GA LR+A A G+I Sbjct: 67 HQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADAAGVHGVI 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A ++K A GA E +P+ +++NL ++++ G G + ++ + + + Sbjct: 127 APKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEASESVFKT 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 IA+++GAEGKGLR T+E + ++ M G + +LNVS A V L+ Sbjct: 187 DLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLF 237 >gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K R D LP H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQVANRQFLD 59 Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 EKSEGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 245 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 33/245 (13%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99 +YG+H V A + + ++ ++ K N + RL V+ + Q Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56 Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153 T+DK E VHQG+ + + P L+ LD + Q LL+VLD V DPHN+GA LR+ Sbjct: 57 TLDKKAEGE-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209 A A + +I K S ++ K A GA E++P IR++NL LQK H+ W Sbjct: 116 ADAAGVNAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +G + ++ + L Q +AL++G+EG+G+R T+E + + M G + +LNVS A Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232 Query: 270 AVALY 274 V L+ Sbjct: 233 GVCLF 237 >gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] Length = 246 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 251 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 35/256 (13%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84 K + + + +YG+H V+ +L N K++ + LAT+ ++ + W Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISWT 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138 P KT+ T VHQG L+ + LS + N + L+++L Sbjct: 63 -------PKKTLSDMT------NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+G+ILR+A A + GII K S + V++K+++GA+EH+P R++NL+ Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + F G + P + K+AL++G EGKG+ ++ M + M G Sbjct: 170 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228 Query: 259 IIKALNVSNAAAVALY 274 +++LN S AAA+ +Y Sbjct: 229 HVQSLNASVAAAILMY 244 >gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] Length = 316 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%) Query: 109 AVHQGLALETAPL-----------LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 A HQG+ TAP+ ++PT DAV+ +Q +L+V+D V DP N GA+LRSAVA Sbjct: 132 ATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVA 191 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I R +A K+++G IP R +L L ++ G+ G + Sbjct: 192 AGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTA 251 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 252 ETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVF 309 >gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116] Length = 247 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGLHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ ++ A L+ +D + S LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKANG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] Length = 261 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG+H VS AL + R FQ +A + R+ DA V+ +P +D+ Sbjct: 3 VIYGIHPVSEALKSRGRS-FQYVAIAKDRMDPRVQRIVEDAR-ESGITVRFLPRDFLDRT 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSC 159 +HQG+ T+ LD + + ++VLD + DPHN+GA++RSA Sbjct: 61 ANTN-MHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218 DG++ +R + + K+++GA E++P R++N+ +++ + + T+GL + Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQ 277 ++ N +AL+LGAEGKGL ++ + + M G + +LNVS A + +Y +++ Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239 Query: 278 NHFAK 282 AK Sbjct: 240 QRRAK 244 >gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810] Length = 246 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] Length = 251 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 19/239 (7%) Query: 50 FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+YG H L N K+F + A + V+ P +D++V Sbjct: 8 FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 68 NHEN-HQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATG 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSD 215 D +I KR + ++V+AK+++GA++++P R++NL T L+K W F T D Sbjct: 127 VDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEGED 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 187 YRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 325 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 11/187 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP +D++ G A+HQGLAL+ P LL D+ R + L + LD V DP N+ Sbjct: 130 VPRNDLDRLTGG-ALHQGLALQVPPYSYAHPDELLEAAADSGRPA-LTVALDGVTDPRNL 187 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++RS AF G++ +R + +AV ++++G +P R +NLT L++ S G Sbjct: 188 GAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGL 247 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL++D L++ ++ +AL+ G+EGKGL +ET + + G +++LN S Sbjct: 248 MVVGLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNAS 307 Query: 267 NAAAVAL 273 A V L Sbjct: 308 VATGVVL 314 >gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 248 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G H AAL K+F K + + V VP +D +V Sbjct: 8 FIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTKLDNLVN 67 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A T+D + +N ++LD + DPHN+G+I+R+A A Sbjct: 68 GQN-HQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDS 216 GII KR + ++V+AK+++GA+EH+P +R++NL ++++ W F T +D Sbjct: 127 HGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKGTDF 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K + AL++G EGKG+ P ++T M + M G +++LN S AA++ +Y Sbjct: 187 RKWSAK----GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 240 >gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] Length = 235 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 21/243 (8%) Query: 45 QPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 Q +N F G +H +S R I Q+L+TK +++ NL V + Sbjct: 2 QKDNFFWVGGKNTIHEISKW---KRRTIKQVLSTK----KINTSENLQETL----VDQKK 50 Query: 101 IDKIVGK-EAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I+KI VHQGLA +T L + + + +++LD+VND NIG+I+R+ A Sbjct: 51 INKIFNDPNFVHQGLAALIEKTKFLKDKDIKNIPDHSNIVLLDNVNDIRNIGSIIRNCAA 110 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F +I K+ + +S L KSASGA EHI +I++SNL A+Q++ GF + D+ Sbjct: 111 FEISHLIIEKKINI-DSHYLFKSASGATEHIQFIKVSNLNTAIQELKRNGFFVFSAALDA 169 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YI 275 K+ +++ K ++LG+EG+G+R + + + I +LNVSN +A+ ++ Sbjct: 170 KQTMKEISFGSKNCIVLGSEGEGVRNLISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHL 229 Query: 276 TQN 278 QN Sbjct: 230 YQN 232 >gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 251 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145 V+ P +D++V E HQGL L AP LD + + +++LD + DPH Sbjct: 55 VQNAPKNKLDQMVNHEN-HQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPH 113 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+ILR+ A D +I KR + ++V+AK+++GA++++P R++NL T L+K Sbjct: 114 NLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKR 173 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T D +K N K L++G EGKG+ P + + M G +++ Sbjct: 174 GYWIFGTAMKGEDYRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQS 229 Query: 263 LNVSNAAAVALY 274 LN S A V LY Sbjct: 230 LNASVATGVLLY 241 >gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1] gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli AAC00-1] gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 250 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 102 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVT 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L ++ IG S D+ + L + +AL+LGAEG G+R T++T + Sbjct: 162 NLARTLGELKERNIWCIGTSDDAPRTLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVS 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 222 IPMRGAVESLNVSVASGVCLY 242 >gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 480 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 8/181 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 + +I G +VHQG+AL+TA + L+++ LL+ LD V DPHN+GA++RS Sbjct: 231 LGQITGG-SVHQGIALQTAAAETIDLESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRS 289 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ +R S + AK A+GALEH+P R+ NL +L+K+ G++ IGL+ Sbjct: 290 AEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLA 349 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L + + L+ G+E +GL T+ + + + G+ +LN S A A+ + Sbjct: 350 GEGDVTLPDVDLSGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCV 409 Query: 274 Y 274 Y Sbjct: 410 Y 410 >gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q ++AL++GAEG+G+R T+ + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] Length = 251 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 26/248 (10%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++K+ G HQG+ P LL T D LL+ LD V DPHN+GA Sbjct: 60 LEKLAGL-PFHQGVVAAVRPHPVMNEKDLEQLLEQTPDV-----LLLALDQVTDPHNLGA 113 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGF 207 +R+A A +I + S S + K A+G E + +I+++NL L +M HS Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQ-V 172 Query: 208 QTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + IG D + PL+Q I +++GAE GLRP TQ ++ M G +++LNVS Sbjct: 173 RVIGTMLDEQALPLQQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVS 232 Query: 267 NAAAVALY 274 A +ALY Sbjct: 233 VATGMALY 240 >gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 248 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G H AAL K+F K + + V VP +D +V Sbjct: 8 FIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTKLDNLVN 67 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A T+D + +N ++LD + DPHN+G+I+R+A A Sbjct: 68 GQN-HQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR + ++V+AK+++GA+EH+P +R++NL ++++ G G Sbjct: 127 HGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKGTDF 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K AL++G EGKG+ P ++T M + M G +++LN S AA++ +Y Sbjct: 187 RKWSAKG-ATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 240 >gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 237 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 87/145 (60%), Gaps = 1/145 (0%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R SQ ++++LD + DP N GA++RSA F D II +R S + + K+++GA+E++P Sbjct: 84 RKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPERNSVRINETVVKTSTGAIEYVP 143 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++++NL++ ++K+ + G + +++ +E K+ L+LG EG GLR K +E Sbjct: 144 IVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSAEEQYPQKVVLVLGNEGTGLRKKVREYC 203 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A + L Sbjct: 204 DKLIKIPMRGKINSLNVSVAGGILL 228 >gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 325 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 14/188 (7%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPH 145 VP +D++ +HQG+AL+ P LLS +A ++++ LL+ LD++ DP Sbjct: 132 VPRSDLDRL-SANGLHQGIALQVPPYRYAHPDDLLS---EARKHAEPPLLVALDNITDPR 187 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RS AF G++ +R S S SAV ++++GA +P R +NLT L+ S Sbjct: 188 NLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASK 247 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q +GL ++ L+ + + +++G+EGKGL +E ++ + M G +++LN Sbjct: 248 GVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNA 307 Query: 266 SNAAAVAL 273 S AA V L Sbjct: 308 SVAAGVVL 315 >gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 250 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 9/193 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 V++VP +D++V HQGL L + L LD L++LD + DPH Sbjct: 54 VQSVPKNKLDRLV-DGGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPH 112 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR++ ++V+AK+++GA++++P R++NL +++ Sbjct: 113 NLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G E K K L++G EGKG+ P ++ L M G +++LN Sbjct: 173 GYWFFGTDMAGVDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231 Query: 266 SNAAAVALYITQN 278 S A V LY N Sbjct: 232 SVATGVLLYQAYN 244 >gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali symbiont] Length = 244 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L +P R ++F L + + A ++ Q +D V Sbjct: 4 IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQV- 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ P + P L A + L++LD V DPHN+GA LRSA A Sbjct: 63 EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K ASGA E++P IR++NL ++ + + +G + ++ L Sbjct: 123 AVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADHNL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + L++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 YQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM 13855] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%) Query: 109 AVHQGLALETAPL-----------LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 A HQG+ TAP+ ++PT DAV+ +Q +L+V+D V DP N GA+LRSAVA Sbjct: 69 ATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVA 128 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I R +A K+++G IP R +L L ++ G+ G + Sbjct: 129 AGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTA 188 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 189 ETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVF 246 >gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] Length = 241 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 16/239 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++YG +TV L P R++ +++ + + + +L N+ ++ K+V Sbjct: 4 WIYGKNTVRELLTGP-RQVHEVMIQNQSKNDDIVKLCRKNNIK----MRMTDKNGFIKLV 58 Query: 106 GKEAVHQG-LALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G HQG +AL +P D VRN LL++LD + DPHN+GAI+R+ A Sbjct: 59 GN-VNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGV 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I K+ S +A +AK ++GA++H+P +++NL+ L + GF +G D+ Sbjct: 118 DGVIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + L++G+EG G+ +E L M G + +LN S A AV LY N Sbjct: 178 YRAVDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYN 236 >gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] Length = 246 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L L+VLD V DPHN+GA LRSA Sbjct: 59 DAQV-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236 >gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] Length = 271 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H+V A L+N P R ++F L + + D ++ Q +D+ Sbjct: 28 IIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDE-KS 86 Query: 107 KEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ P L +LD L+VLD V DPHN+GA LR+A A Sbjct: 87 EGAVHQGIIARVREGRQYQENDLPALLESLDC----PFLLVLDGVTDPHNLGACLRTADA 142 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + S +A K ASGA E++P I ++NL L+ + +G + ++ Sbjct: 143 AGVHAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEA 202 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 203 DHDLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 260 >gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] Length = 246 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus EPS] gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus EPS] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 100 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 159 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + ++ +G S D+ + Q +AL+LGAEG G+R T++T + Sbjct: 160 NLARTMNELKERSIWCVGTSDDAPGTIYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVS 219 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ V LY Sbjct: 220 IPMAGAVESLNVSVASGVCLY 240 >gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] Length = 536 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG+ L+TA + TLD + S LL+ LD + DPHN+GAI+RSA A Sbjct: 241 AVHQGIVLQTA--AAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGA 298 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ + Sbjct: 299 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDIT 358 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + ++ G+E +G+ T+ + + + G+ +LN S A A+ LY Sbjct: 359 LPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLY 413 >gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40] gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVP--PQTIDKIVG 106 ++G+H V + L ++I ++ + AR+ + +K +P +++D V Sbjct: 6 IIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS-VS 64 Query: 107 KEAVHQGL---ALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ A E T L P ++A+ L++VLD V DPHN+GA LRSA A Sbjct: 65 ADGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADAAGA 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + V K A GA +++P I ++NL L+KM G G + D+ K Sbjct: 125 HALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDTDKS 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++GAEG G+R T ET + + M G + +LNVS A V L+ Sbjct: 185 IYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLF 239 >gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118] Length = 256 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 81/145 (55%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY Sbjct: 104 REEALILVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPY 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++NL L ++ IG S + K + Q +AL+LGAEG G+R T +T Sbjct: 164 FMVTNLARTLNELKERNIWIIGTSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCD 223 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LNVS A+ V LY Sbjct: 224 ELVSIPMRGAVESLNVSVASGVCLY 248 >gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida 3523] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63 Query: 107 KEAVHQGL-ALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + TL + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 247 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 20/241 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101 N F+YG+H V A L + + K R D D +P + V V Q + Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58 Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 DK G A HQG+ ++ A L+ +D + ++ LL+VLD V DPHN+GA LR+ Sbjct: 59 LDDKAHG--ANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRN 116 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K S +A ++K A GA E +P IR++NL ++ + G +G + Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236 Query: 274 Y 274 + Sbjct: 237 F 237 >gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 2603V/R] gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] Length = 251 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 35/256 (13%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84 K + + + +YG+H V+ +L N K++ + LAT+ ++ + W Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISWT 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138 P KT+ T VHQG L+ + LS + N + L+++L Sbjct: 63 -------PKKTLSDMT------NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+G+ILR+A A + GII K S + V++K+++GA+EH+P R++NL+ Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + F G + P + K+AL++G EGKG+ ++ M + M G Sbjct: 170 LDTLKDKEFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228 Query: 259 IIKALNVSNAAAVALY 274 +++LN S AAA+ +Y Sbjct: 229 HVQSLNASVAAAILMY 244 >gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 249 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIEVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+ A L + A LL++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A S ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AASVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLF 240 >gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] Length = 244 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 18/236 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105 LYG+H + L I+ L K + + +D + + ++ P +K+ Sbjct: 6 LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLE--PKSFFNKL- 62 Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E VHQG+ A L L+A N L + LD V DPHN+GAILR+A A Sbjct: 63 --EGVHQGVVATVAKEADLNETDLKALLEAESNP-LFLFLDEVQDPHNLGAILRTADATG 119 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ K S +A + K A GA E + + +SNL ++++ G GL+ ++ Sbjct: 120 VTAVVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNT 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q + L++GAEG GLR T+ET +A + M G I++LNVS A V LY Sbjct: 180 TLYQLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLY 235 >gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] Length = 323 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 14/188 (7%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPH 145 VP +D++ +HQG+AL+ P LLS +A ++++ LL+ LD++ DP Sbjct: 130 VPRTDLDRL-SANGLHQGIALQVPPYRYAHPDDLLS---EARKHAEPPLLVALDNITDPR 185 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RS AF G++ +R S S SAV ++++GA +P R +NLT L+ S Sbjct: 186 NLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASK 245 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q +GL ++ L+ + + +++G+EGKGL +E ++ + M G +++LN Sbjct: 246 GVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNA 305 Query: 266 SNAAAVAL 273 S AA V L Sbjct: 306 SVAAGVVL 313 >gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 129PT] gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 2336] gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT] gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus 2336] Length = 245 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 19/238 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YG+H V A L N ++ ++ K RL N + V+ + T+DK Sbjct: 5 IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ P L L N LL+VLD + DPHN+GA LRSA A Sbjct: 65 E-VHQGIIARVQPAKELNENDLVEILQKKANP-LLLVLDGITDPHNLGACLRSADAAGVC 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQTIGLSSDS 216 +I K S +A+ K A GA E +P +R++NL LQ+ H+ W +G + ++ Sbjct: 123 AVIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIW---VVGTAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + +AL++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 180 IETLYEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLF 237 >gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112] gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] Length = 248 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] Length = 249 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 15/243 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ Sbjct: 2 AKPE--YFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDK 59 Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++K+ G + HQG+ A+ P L+ +L + LL+ LDH+ DPHN+GA +R+A Sbjct: 60 LEKLAG-QPFHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLS 213 A + +I + S + + K A+G + + +I+++NL L ++ + + +G Sbjct: 119 AAMGVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTM 178 Query: 214 SDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D K P++ + + +++GAE GLRP TQ ++ M G +++LNVS A + Sbjct: 179 LDEKALPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGM 238 Query: 272 ALY 274 ALY Sbjct: 239 ALY 241 >gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech586] Length = 244 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ V+ Q + Sbjct: 4 IIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASG-----IAVQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + AVHQG+ P L A + L+VLD V DPHN+GA LRSA Sbjct: 59 DDKV-EGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A K A GA E +P IR++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 178 ADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/111 (45%), Positives = 69/111 (62%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL + Sbjct: 16 PHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLG 75 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 GF IGL S++ L+ L LGAEGKGLR +T E + + Sbjct: 76 ERGFTRIGLDSEAGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCDVLVRI 126 >gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Prochlorococcus marinus str. MIT 9313] gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 535 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG+ L+TA + TLD + S LL+ LD + DPHN+GAI+RSA A Sbjct: 240 AVHQGIVLQTA--AAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGA 297 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ + Sbjct: 298 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDIT 357 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + ++ G+E +G+ T+ + + + G+ +LN S A A+ LY Sbjct: 358 LPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLY 412 >gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] Length = 245 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQTID 102 +YG+HTV A L + + K D D P + ++ V +T+D Sbjct: 5 LIYGIHTVKALLEQAPERFLEAWVLKGR----DDDRLQPLLAILQQYGVSIQYVQRKTLD 60 Query: 103 KIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVA 156 + A+HQG+ E L LD + + +VLD V DPHN+GA LR+A A Sbjct: 61 D-KAEGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + S S + K A GA E +P+I+++NL L+++ G +G + ++ Sbjct: 120 AGVHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 THDVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLF 237 >gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 23/241 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTIDK 103 LYG+H V A+ + R++ +L +++ L +L L V P + + Sbjct: 4 LYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLAG-VRVSIEPKDQLTR 62 Query: 104 IVGKEAVHQG----------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + G +A HQG LA+E D + + LD V DPHN+GA+LRS Sbjct: 63 VAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFD----KRFFLALDGVEDPHNLGALLRS 117 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A DG++ R S S V+AK+++GA EH+ R++NL +L++M +GL Sbjct: 118 ADGAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLD 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 N L+LG+EG GL T++T + + M G + +LNVS A AV + Sbjct: 178 ERGTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVM 237 Query: 274 Y 274 Y Sbjct: 238 Y 238 >gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] Length = 251 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 31/249 (12%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++YG+H V + L + + +L K + L+ N P+ + +D + Sbjct: 3 YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQN--QGVPMARESRKDLDDM 60 Query: 105 VGKEAVHQGLALETA--PLLSPT--------------LDAVRNSQLLMVLDHVNDPHNIG 148 V + HQG+ ET P+ T +D + L++VLD V DPHN+G Sbjct: 61 V--KGRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSW 205 A LRSA A D ++ K S S + K A GA E +P++R++N++ DAL++ W Sbjct: 119 ACLRSADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVW 178 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 F G + +++K + +AL++GAEG GLR T+E + L M G + +LNV Sbjct: 179 IF---GAAGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNV 235 Query: 266 SNAAAVALY 274 S A V L+ Sbjct: 236 SVATGVCLF 244 >gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus maricopensis DSM 21211] Length = 242 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145 V+ P +D++ G A HQG+ E L T+D + R LL+VL D + DP Sbjct: 42 VRFAPRIELDQLAGTTA-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPR 100 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA G+I +R S S V+AK+A+GA ++P + NL + ++ + Sbjct: 101 NFGAIIRSAEVLGAHGVIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTD 160 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + ++ + L + K+AL++GAEG+GLR +E + + + G +++LN Sbjct: 161 GVWVYGAAGEAARDLRELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNA 220 Query: 266 SNAAAVALY 274 S AA++ LY Sbjct: 221 SVAASILLY 229 >gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638] gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638] Length = 244 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104 +YG+H V A L P R ++F L ++ RL LP H + V Q + Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL-----LPLIHALEAQGVVIQLASRQ 56 Query: 105 VGKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 E AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA Sbjct: 57 FLDEKSEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + +A K A GA E++P IR++NL ++++ +G + Sbjct: 117 DAAGVHAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 177 EADHTVYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] Length = 244 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L +P R ++F L + + A ++ + +D V Sbjct: 4 IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQV- 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ P P L + L+VLD V DPHN+GA LRSA A Sbjct: 63 EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ + Sbjct: 123 AIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTV 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 FQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 245 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101 +YG+H V A L + ++ ++ K D L F V+ Q + Sbjct: 4 IIYGIHAVKALLESDPQRFMEVYVLKG-----REDRRLTPLFQELESIGITVQLANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D + AVHQG+ P P L + + L+VLD V DPHN+GA LR+A Sbjct: 59 DAQT-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D +I + S +A K A GA E++P IR++NL L+ + +G + + Sbjct: 118 AAGVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ATHALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] Length = 255 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 115/244 (47%), Gaps = 16/244 (6%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQT 100 TS + +YG+H V A L + ++ K R D LP H + V Q Sbjct: 9 TSTSMSEMIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQL 64 Query: 101 IDKIVGKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAI 150 ++ E AVHQG+ P P L A + L++LD V DPHN+GA Sbjct: 65 ANRQFLDEKSEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGAC 124 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA A +I K S +A K A GA E++P IR++NL ++ + + Sbjct: 125 LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIV 184 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A Sbjct: 185 GTAGEADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATG 244 Query: 271 VALY 274 + L+ Sbjct: 245 ICLF 248 >gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%) Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+A E P L A + L++VLD + DPHN+GAI+RSA A G Sbjct: 80 GVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGIQDPHNLGAIIRSAHALGAHG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ K + + V+AK+++GA+EH P R+ N++ AL+++ G + SK+PL Sbjct: 140 IVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEELKEAGLWVAAADTHSKEPLW 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEG G+R + + M G + +LN S +AAV LY Sbjct: 200 GARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVGSLNASVSAAVLLY 252 >gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] Length = 246 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L+N ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELE-----AAGLVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L L+VLD V DPHN+GA LRSA Sbjct: 59 DAQV-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236 >gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437] Length = 247 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP QT+D++ HQG+A + P L+ + R + +++LD + DPH Sbjct: 52 VQQVPRQTLDRVAAG-LNHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A G++ KR + + +AK+++GA+EH+P +R++NL ++ Sbjct: 111 NLGSILRTADASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKER 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + +D+ ++ + +AL++G EGKG+ + +E L M G + +LN Sbjct: 171 GVWLVAGDADASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNA 230 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 231 SVAAALLMY 239 >gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] Length = 246 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103 +YG+H++ A L+N ++ ++ K R ++ +A ++ + +D Sbjct: 4 IIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEAT---GLVIQVASRKWLDS 60 Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V ++ HQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 61 QV-EDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 120 GVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 249 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 9/190 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDP 144 V+ VP + +D + + HQG+ A E A + LD + + LL++LD V DP Sbjct: 52 VRPVPAERLDGL-ARGTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDP 110 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA LR+A A +I + + ++ + + A GA E +PYI ++NL ++++ S Sbjct: 111 HNLGACLRTADAAGVHAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKS 170 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +G + L Q +A ++GAEG+G+R T+ET + + M G +++LN Sbjct: 171 RDVWLVGTDDQATGSLHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLN 230 Query: 265 VSNAAAVALY 274 VS A+AV LY Sbjct: 231 VSVASAVCLY 240 >gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] Length = 239 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YG + V+ AL R LLA ++A AR V+ P +D++ G Sbjct: 1 MLIYGRNPVTEALRE-GRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAG 59 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ E L + A+ + + LL++LD + DP N GAI+RSA Sbjct: 60 TTA-HQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGA 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S SAV+AK+A+GA ++P +++ NL ++++ G + ++ +P Sbjct: 119 HGVVVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQP 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 LE+ + +AL++G+EG GLR +E + + + G +++LN S AA + +Y Sbjct: 179 LERTDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIY 233 >gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 263 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+T P + +D++VG + HQG+ A +DA+ +VLD + DPH Sbjct: 67 VQTAPKRKLDQLVG-HSNHQGVVASVAAYEYADMDALFAKAAAAHEAPFFLVLDEIEDPH 125 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S + +AK+++GA+E+IP +R++NL + ++ Sbjct: 126 NLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLARTMDELKKQ 185 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + ++ + N + L++G+EGKG+ +E + + M G + +LN Sbjct: 186 GLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVSIPMKGRVTSLNA 245 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 246 SVAASLLMY 254 >gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] Length = 251 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD + N+ ++LD + DPH Sbjct: 54 VQFVPKQKIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A + GII KR + + +AK+++GA+E++P +R++N+ ++++ Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G ++ + +A+++G+EG G+ +E + HL M G + +LN Sbjct: 172 GLWIFGTDANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNA 231 Query: 266 SNAAAVALY 274 S AA++ LY Sbjct: 232 SVAASILLY 240 >gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 6/172 (3%) Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A + Sbjct: 42 AVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAV 101 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A K A GA E +P IR++NL ++ + +G + ++ L Q Sbjct: 102 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ 161 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 162 SKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 213 >gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman] gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA131] gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA177] gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21189] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus N315] gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus Mu3] gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315] gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH9] gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH1] gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus ST398] gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus 04-02981] gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp. aureus CGS03] gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp. aureus CGS00] gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11] gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21172] gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21193] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKI 104 E ++G + V A+ + ++I ++ +K A + NL V T +T+ K+ Sbjct: 5 EQDVIFGRNPVMEAIKS-GKEIEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSKL 63 Query: 105 VGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G + HQG+ E LL + + L++LD + DPHN+GAI+RSA A Sbjct: 64 AGSQN-HQGIVALSAVYQYFEVEDLLEYA-EQKKEKPFLLILDEITDPHNLGAIIRSAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G + Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVY 239 >gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 8/197 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV--RNSQLLMVLDHVNDP 144 + ++ VPP+ + + +E HQG+ + L LD + + LL++LD + DP Sbjct: 49 YRMEVVPPEKLFNL-SREKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDP 107 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI+RS+VA DG+I T++ S + + K ++G + IP +R+ N+ ++ + Sbjct: 108 HNLGAIIRSSVAAGADGVIITEKASVEVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKE 167 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF T + + +P DK ALI G EGKG+R ++ + + + M I +LN Sbjct: 168 EGFWTYAATMEG-EPYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLN 226 Query: 265 VSNAAAVALYITQNHFA 281 V+ +AA+ L+ + +A Sbjct: 227 VAASAAIMLFEYRRQWA 243 >gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b] Length = 244 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L +P R ++F L + + A V+ Q +D V Sbjct: 4 IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQV- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + VHQG+ P L L+++ N L++LD V DPHN+GA LRSA A Sbjct: 63 EGGVHQGIVARVKPGKNYQEGDLPDLLESIENP-FLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL ++ + + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 13/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 ++G + V A+ + ++I ++ +K A + NL V T +T+ K+ G + Sbjct: 9 IFGRNPVMEAIKS-GKEIEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSKLAGSQ 67 Query: 109 AVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ E LL + + L++LD + DPHN+GAI+RSA AF Sbjct: 68 N-HQGIVALSAVYQYFEVEDLLEYA-EQKKEKPFLLILDEITDPHNLGAIIRSAEAFGVH 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + +A + K+++GA+E++ ++SN+ + ++ + G IG + K Sbjct: 126 GIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNGGKSF 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 186 EEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIY 239 >gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium erythraeum IMS101] Length = 288 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 22/249 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTI 101 +YG HTV AAL + + L ++ L +D + V + + Sbjct: 42 LIYGRHTVQAALKSE-----RYLNRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRL 96 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D+I ++ HQG+ + P L + + +L+V D +NDPHN+GAI+R+ Sbjct: 97 DQITRRKH-HQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTG 155 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ +R + ++ + K A+GALE+ P R+ NL AL+++ GF G + Sbjct: 156 EALGIQGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVA 215 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +P+ I L++G+EG+GL Q+ ++ + M G +LNVS A +A+Y Sbjct: 216 KDGEPIHTVKFTGAIVLVVGSEGEGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIY 275 Query: 275 -ITQNHFAK 282 I + H++K Sbjct: 276 EIHRQHWSK 284 >gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 255 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD V DPHN GA LR A D + K S S +A ++K + GA E +P I ++ Sbjct: 99 LFLILDGVTDPHNFGACLRVADGAGVDAAVIPKDRSASINATVSKVSGGAAEVMPVITVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++M G IG ++ K + IA+++GAEG+G+R T+ET + Sbjct: 159 NLVRSMKEMQEAGVWLIGTDDEATKSIYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVR 218 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G++ +LNVS A+ V LY Sbjct: 219 IPMQGVVSSLNVSVASGVCLY 239 >gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp. novicida GA99-3549] gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] Length = 247 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ A RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + HL M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Thiomonas sp. 3As] Length = 242 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 6/187 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNI 147 +KT+ + + + G + HQG+ + L L LDAV + L++ LD V DPHN+ Sbjct: 49 LKTLSAERLTALAGTDR-HQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNL 107 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILR+A A +I K + + +A+ ASGA E +PY+ ++NL +L ++ G Sbjct: 108 GAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGL 167 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + + L++GAEG G+R +ET + + M G +++LNVS Sbjct: 168 WVMGTDEAATDDVYAANWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSV 227 Query: 268 AAAVALY 274 AA V LY Sbjct: 228 AAGVCLY 234 >gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 247 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L +P+ ++++ L ++ A V+ Q +D Sbjct: 5 IIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQT- 63 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 64 EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL L+ + +G + ++ L Sbjct: 124 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 237 >gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240 >gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 297 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 9/173 (5%) Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ L+ P LL D+ R + L++ LDH++DP N+GA++RSA AF Sbjct: 115 APHQGIGLKVKPYEYRHPADLLVEAEDSGRPA-LMVALDHISDPRNLGAVIRSAAAFGGH 173 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ R S S +A+ ++++GA +P + NLT L++ G +GL ++ L Sbjct: 174 GVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQDRGLLLVGLDAEGDTSL 233 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + +AL++G+EGKGL +E+ + + M G +++LNVS A V L Sbjct: 234 DDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLNVSVATGVVL 286 >gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 17/237 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217 +I K S +++ K A GA E +P IR++NL+ L+ + W +G + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEVA 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ A RN ++LD + DPHN+G+ Sbjct: 19 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGS 76 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 77 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + HL M G + +LN S AA Sbjct: 137 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAA 196 Query: 270 AVALY 274 ++ +Y Sbjct: 197 SLLMY 201 >gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 15/243 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ Sbjct: 2 AKPE--YFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDR 59 Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154 ++K+ G HQG+ A+ P+ + L+A+ LL+ LD V DPHN+GA +R+A Sbjct: 60 LEKMAGL-PFHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLS 213 A + +I + S S + K A+G E + +I+++NL L ++ + + +G Sbjct: 119 AAMGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTM 178 Query: 214 SDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D K PL+Q + + +++GAE GLRP TQ ++ M G +++LNVS A + Sbjct: 179 LDEKALPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGM 238 Query: 272 ALY 274 ALY Sbjct: 239 ALY 241 >gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] Length = 241 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 16/239 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--IVGK 107 ++YG +T+ AL + ++ + NA D + K +P + +DK + K Sbjct: 4 YIYGKNTILEALKG-DKSVYTVYVQNNA-----KDNGIIEQCKRKKIPFKIVDKSEFIKK 57 Query: 108 --EAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ E ++D + N+ LL++LD + DPHN+GAILR+ A Sbjct: 58 LGNVSHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGV 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I K S + +AK ++GA++H+ +++NLT L+ + F +G D + Sbjct: 118 DGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q N + +++G+EG G+ +++ L M G I +LN S A AV LY N Sbjct: 178 YRQVDYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYN 236 >gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU121] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFL--STAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S S + +AK+++GA++H+P IR++NL + ++ + Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] Length = 247 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 12/237 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG H V A L L + + R V V +D++ Sbjct: 1 MLLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMA 60 Query: 106 GKEAVHQGLA--LETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ +ET P L L+ L++LD V DP N+GA LRSA Sbjct: 61 GGKR-HQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I K ++ + V +ASGA E +PYI ++NL ++++ GF+ GL+ ++ Sbjct: 120 GVDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +A+++GAE KGLR +E ++ + M G + +LNVS A V LY Sbjct: 180 ADLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLY 236 >gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] Length = 276 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+A L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 89 IAKGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACLRTADAMGV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L ++ +G IG + + Sbjct: 149 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIGTDTGGESD 208 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 209 LYHTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETR 266 >gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] Length = 323 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101 +YG H V +AL R + ++ T RL +D H + V P+ + Sbjct: 71 LIYGRHPVLSALEG-ERGLNRIWIT----TRLRYDHRFHHLLLQAKENGTVIDEVEPKRL 125 Query: 102 DKIVGKEAVHQGLALETAP----LLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAV 155 D+I + A HQG+A + AP LS + ++ +++V + + DPHN+GAI+R+A Sbjct: 126 DQITDR-ANHQGIAAQVAPHDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAE 184 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ +R + ++ + K A+GALE+ R+ NL+ AL+++ GF G ++ Sbjct: 185 AIGAQGLVIPQRRASGITSTVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATT 244 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + I L++G+EG+GL TQ + + + + G +LN S AA +ALY Sbjct: 245 GSEPLHTVKFSGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALY 303 >gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 336 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 14/195 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDH 140 PV + +D++ G++AVHQG+AL+ P LL TL RN + L + LD Sbjct: 133 IPVLEIMRPELDRLAGRDAVHQGVALKVPPYEYVHPGELLDRTL---RNGETPLFVALDG 189 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+GAI+RS AF G+I +R S +A K+++GA P SNLT L+ Sbjct: 190 ITDPRNLGAIIRSTAAFGGQGVIVPQRRSAGMTASAWKTSAGAAARTPVAMASNLTQTLK 249 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G +GL PL D+ + +++G+EGKG+ ET ++ + + Sbjct: 250 AFKQAGVFVLGLDGGGDTPLPGLSFADRPVVIVVGSEGKGISRLVAETCDAVVSIPIAAT 309 Query: 260 IKALNVSNAAAVALY 274 ++LN AA+V LY Sbjct: 310 TESLNAGIAASVTLY 324 >gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] Length = 249 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 ++TVP +D + A HQG+A AP D SQ +++LD + DPH Sbjct: 50 IQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A DGI+ KR S + + +AK+++GA++H+P +R++NL+ + ++ Sbjct: 108 NLGSIIRTADASGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G +D+ + +A+++G+EG+G+ ++ + M G + +LN Sbjct: 168 GYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 243 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K R D LP H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQLANRQFLD 59 Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 EKSEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 244 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100 N ++G+H V A L + + ++ K R D D LP ++ + Sbjct: 3 NDMIFGIHAVKAVLASDPVRFIEVFVLKG---RED-DRLLPLVTELQSLGITIQEAGRKA 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 +D V K A HQG+ P LD + + S LL++LD V DPHN+GA LR+A Sbjct: 59 LDDKV-KGASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S +A +K A GA E +P +R++NL ++ + G +G + Sbjct: 118 DAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 178 EATHDIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237 >gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591] gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591] Length = 244 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ V+ Q + Sbjct: 4 IIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGG-----IAVQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + AVHQG+ P L A + L+VLD V DPHN+GA LRSA Sbjct: 59 DDKV-EGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A K A GA E +P IR++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 178 ADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51] gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] Length = 246 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 9/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 P + V +D++ K A HQG+ AP +D + ++VLD V D Sbjct: 48 IPFQFVDKAALDRLTEK-AKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVED 106 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA++R+A A G+I KR S S +A +AK+++GA+EH+ R+ NL L+ + Sbjct: 107 PHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQ 166 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G G ++ + ++ ++ +++G+EGKGL +ET + L M G I +L Sbjct: 167 KAGCWVSGAEAEGTEVYRSDLTGARV-IVIGSEGKGLSRLVKETCDEIVSLPMKGRINSL 225 Query: 264 NVSNAAAVALY 274 N S A ++ +Y Sbjct: 226 NASVAGSILMY 236 >gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] Length = 244 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V A L +P R ++F L + + A ++ + +D V Sbjct: 4 IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQV- 62 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ P P L L+VLD V DPHN+GA LRSA A Sbjct: 63 EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ + Sbjct: 123 AIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTV 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 FQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans SPH-1] Length = 263 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 80/141 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++ Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVT 160 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L ++ IG S D+ K L + AL+LGAEG G+R T++T + Sbjct: 161 NLARTLNELKERDIWIIGTSDDAPKTLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIG 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A+ V LY Sbjct: 221 IPMMGAVSSLNVSVASGVCLY 241 >gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] Length = 347 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT------- 95 +++ E+ +YG H+V AAL N + L +++L +D H V+ Sbjct: 83 STEEESDLIYGRHSVIAALQNQHQ-----LNRVWIISQLRYDPRF-HSLLVQAKANGTVI 136 Query: 96 --VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHN 146 V P+ + +I K HQG+A + A L+ +D + +L+ D +NDP N Sbjct: 137 DEVAPKRLSQIT-KGGNHQGVAAQIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQN 195 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A A G++ +R + ++ + K A+GALE P R+ NL++AL+++ + G Sbjct: 196 LGAIIRTAEALGAQGLVIPQRRAVGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAG 255 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G ++ + K L + + L++G+EG GL ++Q + + + G +LN S Sbjct: 256 FWIYGTAAGTGKLLHKVDLTGSVVLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNAS 315 Query: 267 NAAAVALYIT 276 A A+ LY T Sbjct: 316 AATAMVLYET 325 >gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316] gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316] Length = 249 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 35/256 (13%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84 K + + + +YG+H V+ +L N K++ + LAT+ ++ + W Sbjct: 2 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISW- 59 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138 P+ I + VHQG L+ + LS + N + L+++L Sbjct: 60 ------------TPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 107 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+G+ILR+A A + GII K S + V++K+++GA+EH+P R++NL+ Sbjct: 108 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 167 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + F G + P + K+AL++G EGKG+ ++ M + M G Sbjct: 168 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 226 Query: 259 IIKALNVSNAAAVALY 274 +++LN S AAA+ +Y Sbjct: 227 HVQSLNASVAAAILMY 242 >gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103] gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103] Length = 259 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 14/248 (5%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFP 92 F SR S+ ++G+H V A L +P R ++F L + + A Sbjct: 9 FQPLSRLMSE----IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIV 64 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHN 146 ++ + +D V + VHQG+ P P L L+VLD V DPHN Sbjct: 65 IQLADRKWLDSQV-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA LRSA A +I K S +A K ASGA E++P IR++NL L+ + + Sbjct: 124 LGACLRSADAAGAHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYN 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +G + ++ + Q +AL++GAEG+G+R T+E + + M G + +LNVS Sbjct: 184 IWVVGTAGEADHTVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVS 243 Query: 267 NAAAVALY 274 A V L+ Sbjct: 244 VATGVCLF 251 >gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 248 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 18/244 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152 ++K+ G + HQG+ P PTL+ QL L+ LD V DPHN+GA +R Sbjct: 60 LEKLAG-QPFHQGVVAAVRP--HPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211 +A A +I + + S + K A+G E + +I+++NL L + + + IG Sbjct: 117 TAAAMGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIG 176 Query: 212 LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D K P++Q + + +++GAE GLRP TQ ++ M G +++LNVS A Sbjct: 177 TMLDEKALPIQQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATG 236 Query: 271 VALY 274 +ALY Sbjct: 237 MALY 240 >gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] Length = 251 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 35/256 (13%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84 K + + + +YG+H V+ +L N K++ + LAT+ ++ + W Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISW- 61 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138 P+ I + VHQG L+ + LS + N + L+++L Sbjct: 62 ------------TPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+G+ILR+A A + GII K S + V++K+++GA+EH+P R++NL+ Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + F G + P + K+AL++G EGKG+ ++ M + M G Sbjct: 170 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228 Query: 259 IIKALNVSNAAAVALY 274 +++LN S AAA+ +Y Sbjct: 229 HVQSLNASVAAAILMY 244 >gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Achromobacter xylosoxidans A8] Length = 245 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%) Query: 96 VPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 VP + +D + + HQG+ + A + LD + LL++LD V DPHN+GA Sbjct: 55 VPMERLDGL-SRGTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I + + +A + + A GA + +PY+ ++NL ++ + G + Sbjct: 114 LRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + + Q +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+A Sbjct: 174 GTDDQATDSMHQIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASA 233 Query: 271 VALYIT 276 V LY T Sbjct: 234 VCLYET 239 >gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JKD6159] Length = 248 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + + Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 247 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145 V+ VP + I+++V + +HQG+A + A LD + N S ++LD + DPH Sbjct: 50 VQFVPKKKIEQMV--DGIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR S +A +AK+++GA+EH+P R++NL+ + ++ Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDR 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + + L++G+EGKG+ +E + L M G + +LN Sbjct: 168 GVWIVGTDAKESDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLLMY 236 >gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. Y412MC10] Length = 256 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 24/253 (9%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HP 90 Q+ + Q E + + G H+V+ AL + R I ++ +NA L LP Sbjct: 2 QEETYMMQEEEV-VAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLG 55 Query: 91 FPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVN 142 ++ V + +D++V G + HQG+ + AP +D + + L++LD + Sbjct: 56 IVIQHVDKRKLDQMVPGVQ--HQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIE 113 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+G+ILR+A G+I KR S +A ++K+++GA+E++P R++NL + ++ Sbjct: 114 DPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQL 173 Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G +G D+ + L + E+ + +A+++G E KG+ +E + L M G I Sbjct: 174 KEMGVWVVGTVVDAVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKIN 233 Query: 262 ALNVSNAAAVALY 274 +LN S AA V +Y Sbjct: 234 SLNASVAAGVVMY 246 >gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] Length = 256 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 12/175 (6%) Query: 111 HQGLALETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ L PL L TL A R+ LL+VLD + D HN GA LR+AVA D +I Sbjct: 70 HQGVVLNARPLGFADEGLLDTL-AGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAVIC 128 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223 K ++ S + +AK + GA E +P + ++NL L K+ + G G + ++ KP+ Sbjct: 129 PKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIHAA 188 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 K A+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 189 DLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALY 243 >gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133] Length = 248 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A DG+I KR S + + +AK+++GA+EH+P IR++NL + + Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + +A+++G+EG+G+ + + M G + +LN Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] Length = 248 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 83/143 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD+V DPHN GA +RSA + D II K S +A + K A GA EH + ++ Sbjct: 98 FILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A++K+ G IGL+ ++ L D +A++ GAEG G+R +T+ + +A Sbjct: 158 NLARAIEKLKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAK 217 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 L M G + +LNVS A +ALY T Sbjct: 218 LPMLGEVSSLNVSVATGIALYET 240 >gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7] gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7] Length = 244 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 16/239 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--IVGK 107 ++YG +T+ AL + ++ + NA D + K +P + +DK + K Sbjct: 7 YIYGKNTILEALKG-DKSVYTVYVQNNA-----KDNGIIEQCKRKKIPFKIVDKSEFIKK 60 Query: 108 --EAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ E ++D + N+ LL++LD + DPHN+GAILR+ A Sbjct: 61 LGNVSHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGV 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I K S + +AK ++GA++H+ +++NLT L+ + F +G D + Sbjct: 121 DGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQD 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q N + +++G+EG G+ +++ L M G + +LN S A AV LY N Sbjct: 181 YRQVDYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYN 239 >gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] Length = 249 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143 PV+ +D + G A HQG+ LDAV ++ L+++LD + D Sbjct: 47 IPVEIRERSFLDDLAG-HASHQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILD 105 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA++RSA F +GII +R + S + + K+++GA HIP R++NL AL ++ Sbjct: 106 PHNLGALIRSAHCFGANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELK 165 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + GF G + + + + + L++G E KGLRP ++ + + M G I +L Sbjct: 166 TKGFWIFGADARADQSVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSL 225 Query: 264 NVSNAAAVALY 274 NVS + + L+ Sbjct: 226 NVSVSGGIILH 236 >gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533] gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533] gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 251 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+YG H L N K+F + A + V+ P +D++V Sbjct: 8 FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 68 NHEN-HQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTCDATG 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + + + Sbjct: 127 VDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAMEGED 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 187 YRKWNAKG-KTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] Length = 249 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 ++TVP +D + A HQG+A AP D SQ +++LD + DPH Sbjct: 50 IQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A DG++ KR S + + +AK+++GA++H+P +R++NL+ + ++ Sbjct: 108 NLGSIIRTADASGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ G +D+ + +A+++G+EG+G+ ++ + M G + +LN Sbjct: 168 GYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS223] gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS223] Length = 246 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL AN F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ LD + N++ L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238 >gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4] gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis SP1PR4] Length = 263 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106 LYG+H V A+ + R + + ++ + ARLD ++ + + P ID++ Sbjct: 3 LLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRM-A 61 Query: 107 KEAVHQGLAL---ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K +HQG+ E L L AV+ + + LD V DPHN+GA+LR+A Sbjct: 62 KTEMHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGI+ +R S +AV+AK+++GA EH+ +++NL AL++M IGL Sbjct: 122 DGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTPD 181 Query: 220 LEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+LG+EG GL ++T + + M G + +LNVS A AV +Y Sbjct: 182 YTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMY 237 >gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] Length = 329 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +IGL + E + D + ++LG+EG GL + T +A Sbjct: 236 NLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 296 GIPMSSMVESLNASVAAGITLY 317 >gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 242 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 25/240 (10%) Query: 50 FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V+ ALN K++ + L KN LAR+ + P + Sbjct: 6 LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARI-------KKVNISWTPKTEL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +K+ + VHQG + L P L A + +++LD + DPHN+G+I R+A Sbjct: 59 NKLT-ENGVHQGFMARVSEFAYADLATLLPEL-AEKAEATILILDELTDPHNLGSIARTA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D II K + + + K+++GAL+H+P +R++NL+ L K+ S GF G Sbjct: 117 DATGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDM 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + K KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 177 DGTVYSKWNTKG-KIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMY 235 >gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 235 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 83/140 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD + DP N GA++RSA F GII +R + + + K+++GA+E++ ++++ Sbjct: 89 IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++DA+ K+ + G + K QE + AL+LG+EG G+R K +E+ + Sbjct: 149 NISDAISKLKKLDYWVYGAEGEGSKDYSQEKYPSRTALVLGSEGNGIRKKVKESCDVLIK 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A + L Sbjct: 209 IPMYGKINSLNVSVAGGIIL 228 >gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] Length = 250 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 23/244 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQ 99 E + G H+V+ AL + R I ++ +NA L LP ++ V + Sbjct: 4 EEEVVAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLGIVIQHVDKR 58 Query: 100 TIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151 +D++V G + HQG+ + AP +D + + L++LD + DPHN+G+IL Sbjct: 59 KLDQMVPGVQ--HQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSIL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR S +A ++K+++GA+E++P R++NL + ++ G +G Sbjct: 117 RTADCTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVG 176 Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D+ + L + E+ + +A+++G E KG+ +E + L M G I +LN S AA Sbjct: 177 TVVDAVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAG 236 Query: 271 VALY 274 V +Y Sbjct: 237 VVMY 240 >gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes serotype 4b str. F2365] Length = 251 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] Length = 329 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +IGL + E + D + ++LG+EG GL + T +A Sbjct: 236 NLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIA 295 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA + LY Sbjct: 296 GIPMSSMVESLNASVAAGITLY 317 >gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1] Length = 305 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 10/246 (4%) Query: 38 QKSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--K 94 ++S P + +G V N PSR L+A LD +L V + Sbjct: 46 RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105 Query: 95 TVPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 V P+ +DK+ E HQG+A ET P+ L P L A+ L++VLDHV DPHN+G Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA A + ++R S + K+++GA +P I + N+ L ++ + GF Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 T+GL + L ++ ++AL++GAEG+GL E+ + + + G + +LN S A Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284 Query: 269 AAVALY 274 AA ++ Sbjct: 285 AAFGMF 290 >gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 242 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 4/191 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAI 150 +K Q + +V ++ HQ + SP L N +L+++LD++NDP N+GAI Sbjct: 48 IKLASKQKLFDLVNSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAI 106 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQT 209 LR+A F D +I +K S + AK+ GA E +P I +SNL + ++K G F Sbjct: 107 LRAAECFGVDAVIWSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAV 166 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 SD PL +K LI+G+EGKG++P + A ++ M G I +LNVS A Sbjct: 167 TAEISDRASPLNAFQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQAT 226 Query: 270 AVALYITQNHF 280 AV L Q F Sbjct: 227 AVLLSHYQKCF 237 >gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes L99] Length = 251 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100 +YG+H V A L ++ + K D P ++ V Q Sbjct: 4 IIYGIHAVQALLERDPQRFLDVYLLKGR------DDRRLQPLLQQLENAGIVIQMVSRQW 57 Query: 101 IDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D+ + AVHQG+ P L + + LL+VLD V DPHN+GA LR A Sbjct: 58 LDE-KAEGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + +A K ASGA E +P IR++NL L+ + +G + Sbjct: 117 DAAGVHAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS AA V+L+ Sbjct: 177 EADHHLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLF 236 >gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] Length = 282 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 13/263 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA- 77 + K R + + + F+ R + E F+ G ++V +L +K+F K+ Sbjct: 18 HEKRRSGDQSIRGERGFSSGGRRKEE-ETCFIGGRNSVLESLRAGQVKKVFIKSGKKDGR 76 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAV-----RN 131 L L +A ++T +T+D++ E V HQG+A P L+ V R Sbjct: 77 LLALAEEAERLGVAAIET-EERTLDRLT--EGVRHQGVAASLKPYAYADLEEVLSSCERK 133 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL++LD V D NIGAI+R+A ++ K S +A K+ASGA ++P + Sbjct: 134 DPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAFAYLPVCQ 193 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 I N+ L+K+ GF +G D + ++K + +++GAEGKG+ P T+ Sbjct: 194 IGNIRQTLEKLKERGFWAVGADMDGGDLYQADLKG-PLVIVMGAEGKGISPLTKRMCDFC 252 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS AAA+ +Y Sbjct: 253 VRIPMRGKVSSLNVSVAAALLMY 275 >gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 378 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 7/173 (4%) Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A + P L D V S+ +L+VLD + DPHN+GAI RS AF G Sbjct: 168 ANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQG 227 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R + ++ + K A+GAL +P R+ NL AL+ + GF G +S P+ Sbjct: 228 MVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIY 287 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 IAL++G+EG+G+ TQ + + + G ++LN S AA +ALY Sbjct: 288 SADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALY 340 >gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] Length = 243 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D V + AVHQG+ L L++V ++ L+VLD V DPHN+GA LRSA Sbjct: 59 DDKV-EGAVHQGIVARVREGRQYQENDLPGLLESV-DTPFLLVLDGVTDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + S +A K A GA E++P IR++NL L+ + +G + Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLF 236 >gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205] gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205] Length = 249 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 118/244 (48%), Gaps = 18/244 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152 ++K+ G HQG+ P PTL+ QL L+ LD V DPHN+GA +R Sbjct: 60 LEKLAGM-PFHQGVVAAVRP--HPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211 +A A +I + S S + K A+G E + +I+++NL L + + + IG Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIG 176 Query: 212 LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D K P++Q + + +++GAE GLRP TQ + M G +++LNVS A Sbjct: 177 TMLDEKALPIQQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATG 236 Query: 271 VALY 274 +ALY Sbjct: 237 MALY 240 >gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland 1988] gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28] Length = 221 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 24 VQFVPKQKIEKVV--SGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 81 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 82 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 141 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 142 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 198 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 199 LNASVAASLLLY 210 >gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804] gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii] Length = 245 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 111 HQGL-ALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ AL LL+ LD + LL+VLD V DPHN+GA LR+A A ++ Sbjct: 69 HQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHAVVAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + ++ + + A GA + +PYI ++NL L+ + G +G + L Sbjct: 129 RDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLHTVDA 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY Sbjct: 189 RQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLY 237 >gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans OS217] Length = 246 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+YG+H + + L + +I +L + + LA L A + +T+D+ Sbjct: 6 FIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPL-LKAAQDFGCTAQRATKKTLDE-K 63 Query: 106 GKEAVHQGLA--LETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ ++ A +L+ LDA+ +S L++LD V DPHN+GA LR+A A Sbjct: 64 ADSSQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADAAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII K S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 124 QGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEADGA 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +A+ +GAE KGLR ++E + + M G + +LNVS A V L+ Sbjct: 184 LYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLF 238 >gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] Length = 251 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETA---PL----LSPTLDAVRNSQLLMVLDHVNDPH 145 ++ V + +D++ + VHQG+A+ PL L LD + L+VLD V DPH Sbjct: 52 IQRVSRKQLDELT-EGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA LRSA A G+I + + + V+ K +SGA +PY +++NL L + Sbjct: 111 NLGACLRSAEAAGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDR 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + ++ + +AL +GAEG+GLR T+E + H+ M G +++LNV Sbjct: 171 GIWLVGAAGEAGAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNV 230 Query: 266 SNAAAVALY 274 S A V L+ Sbjct: 231 SVATGVVLW 239 >gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] Length = 248 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V TVP +D++ + HQG+AL A LD + ++LD + DPH Sbjct: 53 VSTVPKTKLDQLTDHQN-HQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII +R + ++V+AK+++GALEH+P R++NL +++ Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTAKELKDR 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + + +AL++G EGKG+ P +++ M + M G +++LN Sbjct: 172 GVWLFGTDMKGRDYRTWD-AHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNA 230 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 231 SVAASLLIY 239 >gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262] gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e] gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes Clip81459] gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S] gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161] gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL J2-064] gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL J1-208] gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL J2-003] gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL J1-175] gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e] gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262] gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220] gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. Scott A] Length = 251 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] Length = 332 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +GL K + E + D + ++LG+EG GL +E+ ++A Sbjct: 237 NLTKAIEGLKERGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGSGLSRLVRESCDAIA 296 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + +++LN S AA ++LY Sbjct: 297 GIPISSSVESLNASVAAGISLY 318 >gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus castenholzii DSM 13941] Length = 248 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 9/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS-QLLMVLDHVND 143 PV+ + + +D+ + +A HQG+ALE LD RN LL++LDH+ D Sbjct: 49 VPVERIDRRELDRRL-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPALLLMLDHIQD 107 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+A G+I R + + + +++GA+EH+ + +SNL ++++ Sbjct: 108 PQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVSNLAATIERVQ 167 Query: 204 SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +G+ D + + E+ D + L+LGAEG GL T+E + L M G I + Sbjct: 168 HAGVWVVGVEDDERARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLVRLPMRGRIAS 227 Query: 263 LNVSNAAAVALY 274 LNV+ A ++ LY Sbjct: 228 LNVAVAGSIVLY 239 >gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] Length = 242 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 6/187 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNI 147 +KT+ + + + G + HQG+ + L + LDAV + L++ LD V DPHN+ Sbjct: 49 LKTLSAERLTALAGTDR-HQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNL 107 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILR+A A +I K + + +A+ ASGA E +PY+ ++NL +L ++ G Sbjct: 108 GAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGL 167 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + + L++GAEG G+R +ET + + M G +++LNVS Sbjct: 168 WVMGTDEAATDDVYAAKWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSV 227 Query: 268 AAAVALY 274 AA V LY Sbjct: 228 AAGVCLY 234 >gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 249 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 14/174 (8%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A ++D + + ++LD + DPHN+G+ILR+A A GII Sbjct: 71 HQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAGVHGII 130 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220 KR + +A +AK+++GA+EH+P R++NL + L+K + W F T ++ D + Sbjct: 131 IPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGT-DMAGDDYRRW 189 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y Sbjct: 190 D---ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIY 240 >gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 247 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + ID + E HQG+ + A +D + + ++LD + DPH Sbjct: 50 VQFVPKKKIDGMA--EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + +A +AK+++GA+E+IP +R++N+ + ++ Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKER 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + K+ Q + L++G+EGKG+ ++ + +L M G + +LN Sbjct: 168 GVWIAGTDAKGKQDFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNA 227 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 228 SVAAALLMY 236 >gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] Length = 256 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 13/243 (5%) Query: 43 TSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVK 94 T +P L LYG + V AL SR++ + AT +A+ W A + H V Sbjct: 9 TREPRTLPDDVTILYGRNAVHEALRG-SREVQHIWATAHAVEE-PWLAAVAHDASAVDVN 66 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILR 152 V + HQG+ + AP +D + + L++ LD + DP N+GAI R Sbjct: 67 VVADGGWIERRSGSPDHQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIAR 126 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G++ R S + + K+++GA+EH+P R NL D L G G Sbjct: 127 TAECAGATGLVIPARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGA 186 Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D P + + L+LG+EG+GLRP+ + ++ L + G I +LNVS AA+ Sbjct: 187 EGDGGVPYTGVDYSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASA 246 Query: 272 ALY 274 LY Sbjct: 247 LLY 249 >gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN L ++ A V+ V Q +D Sbjct: 4 QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + I + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240 >gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM 10] gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125] gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Angola] gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1] gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003] gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10] gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001] gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953] gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516] gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua] gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92] gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F] gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125] gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis IP 31758] gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis Angola] gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis YPIII] gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis PB1/+] gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004] gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038] gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003] gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 246 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D V + VHQG+ P L + L+VLD V DPHN+GA LRSA Sbjct: 59 DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I + S +A+ K ASGA E++P I+++NL L+ + +G + + Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 249 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 14/174 (8%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A ++D + + ++LD + DPHN+G+ILR+A A GII Sbjct: 71 HQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAGVHGII 130 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220 KR + +A +AK+++GA+EH+P R++NL + L+K + W F T ++ D + Sbjct: 131 IPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGT-DMAGDDYRRW 189 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y Sbjct: 190 D---ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIY 240 >gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] Length = 247 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L +P+R +++ L ++ + L+ L + + QT Sbjct: 5 IIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQT- 63 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA Sbjct: 64 -----EGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSAD 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A K A GA E +P I+++NL L+ + +G + + Sbjct: 119 AAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGE 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 179 ADHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 237 >gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] Length = 229 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 111 HQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQGL P L LD A LL+VLD V DPHN+GA LR+A A +I Sbjct: 50 HQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIV 109 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K S +A ++K A GA E +P +R++NL ++ + G +G + ++ + Q Sbjct: 110 PKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSK 169 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 170 LTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLF 219 >gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis DSM 16069] Length = 246 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 22/241 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102 +YG+H V L S ++ +L N + +L D N+ + Q +D Sbjct: 4 LVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIE----IIQKERQELD 59 Query: 103 KIVGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 ++ + HQG+ P + L + + +++LD V DPHN+GA LRS Sbjct: 60 EMTDQR--HQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRS 117 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A +I K + S + V+ K A GA E +P+I ++NL A++++ G G + Sbjct: 118 ADAAGVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTA 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++++ + Q +A+++GAEG+G+R T+E + + M G + +LNVS A V L Sbjct: 178 GEAEQDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTL 237 Query: 274 Y 274 + Sbjct: 238 F 238 >gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 283 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 23/278 (8%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQ---KSRHTSQPEN-----LFLYGVHTVSAALNNPSR 66 +K + K R +H +K +S+++ K R T + ++ + G + V AL + + Sbjct: 1 MKKNDRKKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRS-EQ 59 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLL 122 ++ +LL K+ + D L + + Q+++KI + HQG+A AP Sbjct: 60 QMDKLLILKDNKDHVLGD--LAEKARRRGIVVQSVEKIKLEGLADGQPHQGVAAMMAPFP 117 Query: 123 SPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ DA L+++LDH+ DPHN+GAI+RSA G+I KR S S +AV Sbjct: 118 YSSMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAV 177 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 K++SGA+ H P +++ NLT + ++ + GF + D + + K K+A+I+G Sbjct: 178 SVKASSGAVAHTPIVKVGNLTQCIDELKAKGFWIMAADMDGAPYYKNDFKG-KLAIIIGN 236 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EGKG+ P ++ + + G I + N S AAA+ L Sbjct: 237 EGKGISPNVKKQCDYSVSIPLYGDIDSFNASAAAAIIL 274 >gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] Length = 276 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 16/254 (6%) Query: 40 SRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWDANLPHP-FPVKT 95 SR ++ E+ + +YG +TV+ L + RK+F+++ A A A A + P K Sbjct: 18 SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76 Query: 96 VPPQTIDKIVGKE----AVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDP 144 +P Q +++ + HQG LAL P D + + +++LD + DP Sbjct: 77 LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILR+A A DGI+ K S ++ +AK ++GA+EHIP ++NLT A+ ++ Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + + + L++G+EGKG+ +E +L M G + +LN Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256 Query: 265 VSNAAAVALYITQN 278 S AAA+ +Y N Sbjct: 257 ASVAAALLMYEIYN 270 >gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina MBIC11017] Length = 309 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 19/257 (7%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 +++S +++ + + + +YG H+V +AL + R + ++ ++RL +D Sbjct: 43 RIRSKDKEPAQSEEEQGDLIYGRHSVLSALEH-QRSLNRVWV----VSRLRYDPRFHSLL 97 Query: 92 PVKTVPPQTIDKI-------VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMV 137 ID++ + ++A HQG+A + A L +A +++ Sbjct: 98 NQAKSQGTIIDEVDHRRLNQLTQQATHQGIAAQVAAYEYLDISTLIEQANAATPKPVIIA 157 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 D + DPHN+GA++R+A A G+I +R + ++V+AK A+GALE + R+ NL Sbjct: 158 ADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVAKVATGALETLAIARVVNLNQ 217 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+++ GF GLS+ + + + + L++GAEG GL TQ M + + Sbjct: 218 GLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVLVIGAEGPGLSVSTQHHCDQMVSIPLQ 277 Query: 258 GIIKALNVSNAAAVALY 274 G +LN S A +ALY Sbjct: 278 GKTASLNASVATGMALY 294 >gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] Length = 245 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID-KIVGKE 108 ++G+H V A L++ ++ ++ K D P VK + Q I +I ++ Sbjct: 4 IVFGIHAVKALLDSSPQRFQEVFILKGR------DDKRLQPL-VKELEAQGIVVQIANRQ 56 Query: 109 --------AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 VHQG+ P P L +S L++LD + DPHN+GA LRSA Sbjct: 57 WLDSQVEGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + S +A K ASGA EH+P I ++NL ++ + +G + Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHNLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLF 236 >gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 242 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 23/239 (9%) Query: 50 FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V+ ALN K++ + L KN LARL + P + Sbjct: 6 LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARL-------KKVNISWTPKTEL 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 +K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A Sbjct: 59 NKLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D II K + ++ K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 118 ATGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMD 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 178 GTVYSKWNTKG-KVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMY 235 >gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 17/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKIVG 106 +YG+H V A L ++ ++ K R + A L ++ Q +D+ V Sbjct: 4 MIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEKV- 62 Query: 107 KEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ P L LD L++LD V DPHN+GA LRSA A Sbjct: 63 EGAVHQGIIARVREGRQYQENDLPALLENLD---KPPFLLILDGVTDPHNLGACLRSADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 120 AGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 DHNLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237 >gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC 25196] gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 249 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 11/236 (4%) Query: 50 FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-V 105 F++G H +++ L + R++F ++ AR D A L ++ + + + Sbjct: 6 FIFGFHAITSRLRQNAASVREVFLDAERRDQRAR-DL-AALAEAQDIRLIACDNARLMAL 63 Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ +++A + LD + LL+VLD + DPHN+GA LR A AF Sbjct: 64 AGNARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + +A + K ASGA +++PYI ++NL L+ + G +G ++D+ L Sbjct: 124 AVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADTQL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 IA +LG+E KG+R T+E + + M G +++LNVS +A + L+ T Sbjct: 184 GVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFET 239 >gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] Length = 228 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPH 145 V+ Q +D+ V + AVHQG+ P L L ++ + L++LD V DPH Sbjct: 31 VQVAQRQWLDEKV-EGAVHQGIVARVKPGRQYQENDLPDLLASLDHPPFLLILDGVTDPH 89 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA LRSA A D +I + S +A K A GA E +P IR++NL ++ + Sbjct: 90 NLGACLRSADAAGIDAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEE 149 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 IG + ++ L Q +AL++GAEG G+R T+E + + M G + +LNV Sbjct: 150 NIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNV 209 Query: 266 SNAAAVALY 274 S A + L+ Sbjct: 210 SVATGICLF 218 >gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB056] gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB058] gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB059] gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] Length = 249 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 24/247 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++K+ G HQG+ P LL+ T DA LL+ LD V DPHN+GA Sbjct: 60 LEKLAGL-PFHQGVVAAVRPHPTLNEKDLDQLLTETPDA-----LLLALDQVTDPHNLGA 113 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQ 208 +R+A A +I + S S + K A+G E + +I+++NL L + + + Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVR 173 Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IG D P+++ + + +++GAE GLRP TQ A++ M G +++LNVS Sbjct: 174 VIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSV 233 Query: 268 AAAVALY 274 A +ALY Sbjct: 234 ATGMALY 240 >gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3] gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3] Length = 246 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A HQG+ ++ A +L LD + L++LD V DPHN+GA LR+A A Sbjct: 65 ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238 >gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] Length = 285 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIG 148 VP +D++V HQG+ + + T+D A +N ++LD V DPHN+G Sbjct: 93 VPKSKLDQLV-DGMNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLG 151 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I+R+A A GII KR + +A +AK+++GA+EH+P R++NL A++++ G Sbjct: 152 SIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVPVARVTNLVQAIKELKERGLW 211 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + + E I L++G EGKG+ +E M + M G +++LN S A Sbjct: 212 LYGTDMEGQDYRQWET-TLPIGLVMGNEGKGISRLVKEQMDGMVTIPMTGHVQSLNASVA 270 Query: 269 AAVALY 274 A++ +Y Sbjct: 271 ASLLMY 276 >gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 5/171 (2%) Query: 109 AVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A HQG+ A + L LD + L+VLD + DPHN+GA LR A A +I Sbjct: 68 ARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHAVI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + K ASGA E +PYI ++NL AL++M IG + +K L Sbjct: 128 APKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLYAA 187 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A +LGAEG GLR T+ET + + M G + +LNVS A V LY Sbjct: 188 QWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLY 238 >gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus oremlandii OhILAs] Length = 250 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 10/192 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVND 143 P++ V Q ++++ + VHQG+ A D + N++ L++LD + D Sbjct: 48 IPIQYVERQKLNEMSSSD-VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMD 106 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+G+++R+A A DGII KR S ++ +AKS++GA+E++P ++SN+ + K+ Sbjct: 107 PHNLGSMMRTADAVGVDGIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIK 166 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G S SK+ ++K +AL++G EG+G+ +E + L M G + + Sbjct: 167 DMGIWVAGADMSGSKEHYNMDLKG-PLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSS 225 Query: 263 LNVSNAAAVALY 274 LN S AAAV +Y Sbjct: 226 LNASVAAAVLMY 237 >gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 110/236 (46%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKE 108 +YG+H V A L + ++ K R D L H + V Q ++ E Sbjct: 4 MIYGIHAVQALLERAPERFQEVYILKG---REDKRLLPLIHALEAQGVVIQLANRQFLDE 60 Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 61 KSEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236 >gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 328 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAV--------RNSQLLMV 137 P+ +P +D++ AVHQG+A++ P P LD + ++ L + Sbjct: 122 LPMLEIPRSELDRLT-DGAVHQGIAMQIPPYQYPDATDLVLDVMERWHAGKLKSPPLFVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAI+RS AFS DG+I +R S + +A K+++GA IP +NLT Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 LQ+ G IGL L ++ ++ + +++G+EGKGL ET + + + Sbjct: 241 VLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGKGLSRLVTETCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 +++LN + A + LY H A+ Sbjct: 301 DSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] Length = 306 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 4/170 (2%) Query: 109 AVHQGLALETAPL--LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 AVHQG+AL+ P P R + L++ D + DP N+GAI+RSA AF +G++ Sbjct: 129 AVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNLGAIVRSAAAFGANGVVIP 188 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEI 224 +R S +A KS++G L ++P + +NLT L+ G GL S + + EI Sbjct: 189 ERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGCFVAGLDSRGAITVADLEI 248 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G+EGKGL ET +A + MPG ++LN AA +ALY Sbjct: 249 ADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIALY 298 >gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 243 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ H ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AHGIVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 DK ++AVHQG+ + L LD + + L++LD V DPHN+GA LR+A Sbjct: 59 DK-QAEDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I + S +A + K A GA E +P I ++NL ++ + +G + Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 23/220 (10%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP- 120 P R+I +L + + +K V +D I G + HQG+A A Sbjct: 41 GGPVRRIVELCRERGVV--------------IKDVSSVKLDAICGGMS-HQGVAAMAAAH 85 Query: 121 ---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 +S L A + L++ D +NDPHN+GAI+R+A G+I KR + +A Sbjct: 86 EYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAIIRTAECCGAHGVIIPKRGAVGLTA 145 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + K+ASGALE++P R+SNL ++++ G G D + E + A+I+G Sbjct: 146 AVDKAASGALEYMPVARVSNLAATVEELKKEGVWVYGTDMDGQPFYETDFSGGA-AVIIG 204 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +EGKG+ +E + + M G I +LN S AA + LY Sbjct: 205 SEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGIVLY 244 >gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 320 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 13/193 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 P+ P +D++ AVHQGLAL+ P L+ P V L++ LD + Sbjct: 124 LPILEAPRGELDRLT-DGAVHQGLALQVPPYEYADPRDLVDPEQPGV---PLIVALDGIT 179 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RS AF G++ +R S +A K+++GA IP + NLT AL+ Sbjct: 180 DPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDF 239 Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF +GL D L + + + + ++ G+EGKGL +ET + + M ++ Sbjct: 240 KRAGFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVE 299 Query: 262 ALNVSNAAAVALY 274 +LN A VALY Sbjct: 300 SLNAGLATGVALY 312 >gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 310 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 11/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP +D++ +HQG+AL+ P LL+ +D LL+ LD+++DP N+ Sbjct: 119 VPRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDT--PPALLVALDNISDPRNL 175 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RS AF G++ +R S S +AV ++++GA IP R +NLT L+ G Sbjct: 176 GAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGL 235 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + IGL + + ++ +D + +++G+EGKGL ++ + + M G ++LN S Sbjct: 236 RVIGLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASV 295 Query: 268 AAAVAL 273 AA V L Sbjct: 296 AAGVVL 301 >gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +G H V A L++ + QL + + R + H PV T P ++ + +E Sbjct: 28 WGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAARHGIPVHTEIPADLN--LEEE 85 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ PTL+ + + +QLL+ LD + DP N+GAI+R+A AF DG+ Sbjct: 86 ISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGL 145 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + + K+A+G L + R++NL+ +L ++ GF G + + L Q Sbjct: 146 LIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQLKKHGFWIYGAGGQAPQQLHQ 205 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + I L++G E KGLRP + + M +++LNV+ A V L Sbjct: 206 TSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVIL 256 >gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] Length = 249 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 24/247 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++K+ G HQG+ P LL+ T DA LL+ LD V DPHN+GA Sbjct: 60 LEKLAGL-PFHQGVVAAVRPHPTLNEKDLDQLLAETPDA-----LLLALDQVTDPHNLGA 113 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQ 208 +R+A A +I + S S + K A+G E + +I+++NL L + + + Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVR 173 Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IG D P+++ + + +++GAE GLRP TQ A++ M G +++LNVS Sbjct: 174 VIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSV 233 Query: 268 AAAVALY 274 A +ALY Sbjct: 234 ATGMALY 240 >gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] Length = 328 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAV--------RNSQLLMV 137 P+ +P +D++ AVHQG+A++ P P LD + ++ L + Sbjct: 122 LPMLEIPRSELDRLT-DGAVHQGIAMQIPPYQYPDATDLVLDVMERWHAGKLKSPPLFVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAI+RS AFS DG+I +R S + +A K+++GA IP +NLT Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 LQ+ G IGL L ++ ++ + +++G+EGKGL ET + + + Sbjct: 241 VLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGKGLSRLVTETCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 +++LN + A + LY H A+ Sbjct: 301 DSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 242 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 25/240 (10%) Query: 50 FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V+ ALN K++ + L KN LAR+ + P + Sbjct: 6 LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARI-------KKVNISWTPKTEL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +K+ + VHQG + L P L A + +++LD + DPHN+G+I R+A Sbjct: 59 NKLT-ENGVHQGFMARVSEFAYADLATLLPEL-AEKAEATILILDELTDPHNLGSIARTA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D II K + + K+++GAL+H+P +R++NL+ L K+ S GF G Sbjct: 117 DATGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDM 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + K KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 177 DGTVYNKWNTKG-KIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMY 235 >gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 329 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ Sbjct: 178 LFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLPVARVV 237 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A++ + G+ +I L + E ++D + ++LG+EGKG+ +E S+ Sbjct: 238 NLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQCDSIV 297 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA +AL+ Sbjct: 298 SIPMTSLVESLNASVAAGIALF 319 >gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 247 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V T T+ K+ G + HQG+ +A +D + + L++LD + DPH Sbjct: 50 VSTTDNDTLSKLAGSQN-HQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA AF GII KR + +A + K+++GA+EH+ ++SN+ + ++ + Sbjct: 109 NLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKER 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G +++K E+ + +A ++G EGKG+ + + + M G I +LN Sbjct: 169 GLWIVGTDVNAEKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNA 228 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 229 SVAASILIY 237 >gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] Length = 269 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 115/220 (52%), Gaps = 15/220 (6%) Query: 65 SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 RK+F L ++ +ARL D +P F V + ++++ G AVHQG+A AP Sbjct: 41 CRKVFLLAGAQDEFRDTVARLCADGRIPLDF----VEREELERLSGG-AVHQGVAARVAP 95 Query: 121 LLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + LD V ++ L+++LDH DPHN+GA++R+A ++ S + + Sbjct: 96 IPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACVVCQNDRSATVNG 155 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + K+++GA +P ++ N+ A++++ GF +GL + + + +++AL++G Sbjct: 156 TVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETVWSSALPERLALVVG 215 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +EG+G+ T + + M G LN S AAA+ ++ Sbjct: 216 SEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMF 255 >gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 12/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106 +++G H V A L ++ Q+ + T R+ + V+ V + +D+ V Sbjct: 5 YIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQRVA 64 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ + L L L++LD V DPHN+GA LR+A A Sbjct: 65 --GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAVGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S S S + K A GA E +P +R++NL ++ + G IG + ++ Sbjct: 123 QAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEADST 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 183 LHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLY 237 >gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 244 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100 N ++G+H V A L + + ++ K R D D LP ++ + Sbjct: 3 NDMIFGIHAVKAVLASDPVRFIEVFVLK---GRED-DRLLPLVTELQSLGITIQEAGRKA 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 +D V K A HQG+ P LD + + + LL++LD V DPHN+GA LR+A Sbjct: 59 LDDKV-KGASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S +A +K A GA E +P +R++NL ++ + G +G + Sbjct: 118 DAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 178 EATHDIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237 >gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] Length = 251 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 111 HQGLALETAPLLSPTLDA------VRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + AP P ++ VRN L++VLD V DPHN+GA LR+A A I+ Sbjct: 75 HQGVIVHCAP--RPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIV 132 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T + +S + + K ASGA E +P + + NL L + G T+GL + + L Sbjct: 133 TPRHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+++GAEG+G+R T+E +A + M G +++LNVS A + L+ Sbjct: 193 DLRPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLF 243 >gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS185] gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS195] gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS185] gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS195] gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS678] Length = 246 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL AN F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ LD + N++ L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238 >gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis MR-1] gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis MR-1] Length = 246 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL F ++ + +D+ Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDE-KA 64 Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ ++ A +L+ L A + L++LD V DPHN+GA LR+A A Sbjct: 65 ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLF 238 >gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS155] gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS155] Length = 246 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL AN F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSP-TLDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ LD + N++ L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238 >gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 318 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 28/273 (10%) Query: 21 AKLRRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLAT 74 A+ R H+ Y+ + N++ + +PE + G + V AL + P ++ L Sbjct: 41 AEDRPGHKAYRAANAANKRDQARQKKADRPE--LIAGRNPVVEALRADVPGTALYVALNI 98 Query: 75 K-----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------L 121 N RL D + + +P + +D+ + A+HQGL L+ P L Sbjct: 99 DIDDRVNEAVRLAGDKGIS----ILEIPREELDRKTNR-AMHQGLGLQVPPFEYAHPDDL 153 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + D+ N+ L + LD V DP N+GA++RSA AF G++ +R S +AV ++++ Sbjct: 154 MQAARDS-GNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSA 212 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240 G +P +NLT L+ S G +GL +D ++ E+ D + ++LG+EG+GL Sbjct: 213 GTAAKLPIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGL 272 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +ET + + M +++LN S AA V L Sbjct: 273 SRLVRETCDATVSIPMAAGVESLNASVAAGVLL 305 >gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium wasabiae WPP163] Length = 243 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 DK ++AVHQG+ ++ L LD + + L++LD V DPHN+GA LR+A Sbjct: 59 DK-QAEDAVHQGIVVKVKEGRKYQENDLPAMLDNI-ETPFLLILDGVTDPHNLGACLRNA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I + S +A + K A GA E +P I ++NL ++ + +G + Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 247 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+RSA AF G+I KR S +A + K+++GA+E+I ++S Sbjct: 97 FLLILDEITDPHNMGAIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYIKVAKVS 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + G IG + ++K E+ + +AL++G+EGKG+ E + Sbjct: 157 NINSTIRDLKEKGLWIIGTDAKAEKSFEELDYDFPLALVIGSEGKGISRLVLENCDFVIK 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA++ +Y Sbjct: 217 IPMKGKINSLNASVAASILMY 237 >gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7] gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7] Length = 246 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ L A + L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238 >gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 10/233 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 ++G+H V A L+N ++ +L L RL NL F ++ + +D G Sbjct: 7 IFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLDDKAGS 66 Query: 108 EAVHQGLALETA---PLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ PL LD + + L++LD V DPHN+GA LR+A A Sbjct: 67 SQ-HQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADAAGVHA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S ++ ++K A GA E IP +++NL ++ + G +G + +++ + Sbjct: 126 VIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEAEGNVY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E S+ + M G + +LNVS A V L+ Sbjct: 186 QADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLF 238 >gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114] gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114] Length = 242 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 13/232 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFP--VKTVPPQTIDKIV 105 +L G HTV+ AL N + IF++ L++KN + + P + + Q IDK+ Sbjct: 10 FWLGGKHTVNHALKNENNAIFKVFLSSKNNINEI------PKKYLNLISIKSHQEIDKLF 63 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG A++ + +R + + +++L++V D NIG+I+RS VAF Sbjct: 64 STKINHQGYAVKIKERKTFQFSELRKNIIKYDEIIILNNVFDDRNIGSIIRSCVAFDVKC 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + S ++ KSASG +E+I +SNL + ++ + + L +S K + Sbjct: 124 LIVEKNNFRAGSELMNKSASGGMEYIDIYLVSNLNNVIKVLQQNAYWVYSLDGESNKNIF 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 N K A I G+EG G++ ++ + + + + I++LN+SN+ ++ L Sbjct: 184 DIKFNKKSAFIFGSEGDGIKSLVKKNSDEIISIPINKKIESLNLSNSVSIVL 235 >gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] Length = 300 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 119/250 (47%), Gaps = 29/250 (11%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDK 103 F+ G H V AL+ P +IF LA N RL D A H ++TVP +DK Sbjct: 4 FIEGKHPVWEALSTHVPITRIF--LADGNKHDRLLQDILHMAARQH-IVMETVPRAQLDK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQ------LLMVLDHVNDP 144 K HQG+ + P +LD AV +S L++VLDH+ D Sbjct: 61 -RSKRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDA 119 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAI RSA + GII + S +A KS++GA+ HIP +++NL AL ++ + Sbjct: 120 GNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKN 179 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ G S ++ + + L++G E GL TQE L G++ +LN Sbjct: 180 EGYWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLN 239 Query: 265 VSNAAAVALY 274 V+ +A V +Y Sbjct: 240 VAQSATVCMY 249 >gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 332 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 10/193 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 PV V +D++ G + VHQG+AL+ P LL +D LL+ LD V Sbjct: 132 IPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQDLLEQIIDR-GEVPLLVALDGVT 190 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RS AF G+I +R S S ++ K+++GA IP +NLT L++ Sbjct: 191 DPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALAANLTATLKEF 250 Query: 203 HSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G +GL+ D L E+ + + +++G+EGKGL ET + + + + Sbjct: 251 KKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKGLSRLVTETCDQVVSIPISTATE 310 Query: 262 ALNVSNAAAVALY 274 +LN AA+VALY Sbjct: 311 SLNAGIAASVALY 323 >gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC 13032] gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 313 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 8/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVND 143 PV V +D++ G +HQG+ L P L A + + ++LD++ D Sbjct: 114 LPVLEVNKLELDRMTGN-GMHQGIGLAIPPYEYADVHDLIANAAASKKPGMFVILDNITD 172 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RS AF +G+I +R S S +AV ++++G +P + +N+T +++ Sbjct: 173 PRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQ 232 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q +GL + L+ D + +++G+EGKG+ +E ++ + G +++L Sbjct: 233 QNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESL 292 Query: 264 NVSNAAAVAL 273 N S AA V L Sbjct: 293 NASVAAGVVL 302 >gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 244 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 26/244 (10%) Query: 48 NLFLYGVHTVSAAL-NNPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96 N ++G+H V A L ++P+R ++F +L+ N L L ++ Sbjct: 3 NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLG--------ITIQEA 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + +D V K A HQG+ P L A + + LL++LD V DPHN+GA Sbjct: 55 GRKALDDKV-KGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A ++ K S +A +K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGAIAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++ + +A+++GAEG+G+R T+ET + + M G + +LNVS A+ Sbjct: 174 GTAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233 Query: 271 VALY 274 + L+ Sbjct: 234 ICLF 237 >gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 251 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR + + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T S + ++ ++ +A+++G+EG G+ +E + HL M G + + Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228 Query: 263 LNVSNAAAVALY 274 LN S AA++ LY Sbjct: 229 LNASVAASLLLY 240 >gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] Length = 245 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 6/189 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V VP + +D + + HQG+ + A + LD + LL++LD V DPHN+ Sbjct: 52 VHPVPMERLDGL-SRGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNL 110 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LR+A A +I + + +A + + A GA + +PY+ ++NL ++ + G Sbjct: 111 GACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGV 170 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + + + +A ++GAEG+G+R T+ET + ++ M G +++LNVS Sbjct: 171 WLVGTDDQATDSMHKIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSV 230 Query: 268 AAAVALYIT 276 A+AV LY T Sbjct: 231 ASAVCLYET 239 >gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis N1568] Length = 250 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I+ K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] Length = 257 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 16/238 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVK-TVPPQT-IDKI 104 +YGVH V AL + +++ K R W L + V+ + QT I ++ Sbjct: 9 LIYGVHPVLEALRREGNAVEEVIVVKGR--RAPWFEEVKALAQKYGVRFRLADQTWIKRL 66 Query: 105 VGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 VG HQG+ T P + L + LL+V D + DP N+G +LR+A A Sbjct: 67 VGP-VNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAV 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ K + ++V+ K+A+GA+ H+P R++NLT A+ G IG + + Sbjct: 126 GAQGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATAS 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274 + L +AL++G EG+GLRP+ ++ + + M G + +LN + A AV +Y Sbjct: 186 QTLYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMY 243 >gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 357 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 12/194 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMV-LDHV 141 PV V +D+I G +AVHQGLAL+ P LL T+ R LMV LD + Sbjct: 154 IPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTIS--RGQVPLMVALDGI 211 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI+RS AF G+I +R S +A K+++GA P SNLT L+ Sbjct: 212 TDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKA 271 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G +GL L + D+ I +++G+EGKGL ET ++ + + Sbjct: 272 LKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGAST 331 Query: 261 KALNVSNAAAVALY 274 ++LN AA+V LY Sbjct: 332 ESLNAGIAASVTLY 345 >gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] Length = 279 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 128/269 (47%), Gaps = 19/269 (7%) Query: 21 AKLRRNHRDYK-----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLAT 74 +K+ +N YK K + K + E+ F++G H V A+ K+F L Sbjct: 6 SKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNFVFGYHAVVEAIQQGRGNKLF--LQE 63 Query: 75 KNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDA 128 + ++D L PVK VP ++ + + VHQG+ L L+ L+ Sbjct: 64 DSKGEKIDKLKQLAQERSLPVKWVPKTKLE-MWSNQGVHQGMVLAITAYEYLSLNELLEQ 122 Query: 129 VR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 V+ + ++LD + DPHN G+I R+A A DGII K S + V+ K+++GA+E Sbjct: 123 VKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTGAVE 182 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +IP R++NL+ + K+ F G + +ALI+G EGKG+ + Sbjct: 183 YIPVARVTNLSQIIAKLKEQQFWIFGTDMTGIDYRNWD-ATGALALIIGNEGKGISAGLK 241 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + + M G +++LN AA + +Y Sbjct: 242 KEADELITIPMSGHVQSLNAGVAAGLLMY 270 >gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] Length = 245 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 6/184 (3%) Query: 96 VPPQTIDKIVGKEAVHQG-LAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V Q +D + K HQG LA+ + A + LD + LL++LD V DPHN+GA Sbjct: 55 VDSQRLDAL-AKGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S ++ + + A GA + +PYI ++NL L+ + G I Sbjct: 114 LRTADAAGVHAVIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWII 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++K + A ++GAEG G+R T E+ + + M G +++LNVS A+A Sbjct: 174 GTTDATEKSVYDIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASA 233 Query: 271 VALY 274 V LY Sbjct: 234 VCLY 237 >gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] Length = 317 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K ++++ K H AKL R RD RH + + + G + V L+ P Sbjct: 40 KAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECLHAKVP 87 Query: 65 SRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + ++ T++ LA AN + P+ V +D++ G +HQG+ L+ P Sbjct: 88 ATNLYIAQGTRSDERLAEAVAIANARN-LPILEVQRHVMDQMTGN-GMHQGIGLQIPPYK 145 Query: 123 SPTL-----DAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + +A + + + ++LD++ DP N+GA++RS AF DG+I +R S S +AV Sbjct: 146 YADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234 ++++G +P R +N+T +Q+ G+Q +GL + + L+ + D + +++G Sbjct: 206 AWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPVVIVIG 265 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +EGKG+ +E + + M +++LN S AA L Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVL 304 >gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] Length = 255 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 8/187 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNI 147 V+ VP +D++ + HQG+ + AP LD V S L++VLD + DPHN Sbjct: 65 VQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHNF 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G+ Sbjct: 122 GAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAGY 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 182 WIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNASV 241 Query: 268 AAAVALY 274 AA V LY Sbjct: 242 AAGVLLY 248 >gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 315 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP +D++ +HQGLAL+ P L A LL+ LD+++DP N+G Sbjct: 124 VPRPDLDRM-STNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLG 182 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF G++ +R S S +AV ++++GA +P R +NLT L+ G Sbjct: 183 AIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGIT 242 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L+ IA+++G+EGKGL ++T ++ + M G +++LN S A Sbjct: 243 IVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVA 302 Query: 269 AAVAL 273 A V L Sbjct: 303 AGVVL 307 >gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 82/140 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD + DP N GA++RSA F GII +R + + + K+++GA+EH+ ++++ Sbjct: 89 IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRVNETVVKTSTGAIEHVDIVKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+++AL K+ + G + K +E + AL+LG+EG G+R K +E + Sbjct: 149 NISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGIRKKVKENCDVLIK 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A + L Sbjct: 209 IPMYGKINSLNVSVAGGIIL 228 >gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 256 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP+ ++ + +++LD + DPHNIGA+LR+A G+I Sbjct: 72 HQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAGAHGVI 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + ++ +AK+++GA+E++P R++NL + ++ G IG + D+ +P ++ Sbjct: 132 IPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPRPYFRQ 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+G+EGKG+ P +E + + M G + +LN S A A+ +Y Sbjct: 192 DFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMY 242 >gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 13/182 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V++ P + K +G+E +L LD N LL++LD V DPHN+GAILR Sbjct: 18 VRSAPSKIAVKALGEE------------VLDGILDKSSNP-LLLILDCVQDPHNLGAILR 64 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A D +I + S + + + + GA E +P+I+++NL ++++ S G G Sbjct: 65 TADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTNLARTMKQLQSRGIWIFGT 124 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + L + AL++GAEG+G+R T+E + + M G I LNVS A V Sbjct: 125 SDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCDFLLRIPMKGSIPCLNVSVATGVC 184 Query: 273 LY 274 LY Sbjct: 185 LY 186 >gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 23/244 (9%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLD--------WDANLPHPFPVKTVP 97 +++ + G H + A L NP I + K RL+ +D N+ V+ Sbjct: 3 KSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQ--- 59 Query: 98 PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAI 150 +DK+ + HQG+A E P+L + + N+ L+++LD + DP N+GA Sbjct: 60 ---LDKLSNYQT-HQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGAC 115 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA A D +I K S S SA++ K+++GA+ I +++NL+ ++ + I Sbjct: 116 LRSANAAGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVI 175 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL S + + Q A+I+G+EG GL+ T+++ +A + M G +++LNVS A Sbjct: 176 GLDSSANTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATG 235 Query: 271 VALY 274 + L+ Sbjct: 236 ITLF 239 >gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] Length = 326 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+GA++RSA AF G+I +R S S +A K ++GA H+P R+ Sbjct: 175 LFIALDGVTDPQNLGAVIRSAAAFGASGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 234 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT A+ + GF +IGL + + D + ++LG+EGKG+ +E ++ Sbjct: 235 NLTKAIDSLKERGFYSIGLDGGGTAQVGYSGFETDPLIVVLGSEGKGISRLVREQCDAIV 294 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++++LN S AA +AL+ Sbjct: 295 SIPMTSLVESLNASVAAGIALF 316 >gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4] gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4] Length = 246 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ ++ A +L+ L A + L++LD V DPHN+GA LR+A A Sbjct: 65 ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238 >gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 318 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P L D L++ LD V DP N+GAI+RS AF G++ Sbjct: 140 HQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A KS++G P R++NLT AL+ G +GL++D + +E Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 260 EELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311 >gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana ATCC 700345] Length = 246 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 24/239 (10%) Query: 52 YGVHTVSAAL-NNPSRKIFQLLATKNALARL--------DWDANLPHPFPVKTVPPQTID 102 +G+H V A L N+P R I + ARL +W ++ + D Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQY-----ASRKALDD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K G + HQG+ + P LS L+ L++LD V DPHN+GA LR+A Sbjct: 63 KSDGGQ--HQGIVAKVKPAKILSDNELSAMLEKT-EVPFLLILDGVTDPHNLGACLRNAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I K S + V++K A GA E +P +++NL ++ + G IG + + Sbjct: 120 AAGVHGVIVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 180 ADCELYQASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLF 238 >gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] Length = 249 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQL--LATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L ++ I +L L KN + R + V ++ + Sbjct: 6 LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAM-A 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G + L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETR 240 >gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] Length = 248 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKI 104 N ++G H+V A L + ++ A K RL+ L F V + +T+D+ Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL + LD + + L+VLD V DPHN+GA LRSA A Sbjct: 63 ADGEQ-HQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + V K A GA E +P + ++NL L+++ G IG + ++ Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++GAEG G+R T+E ++ + M G + +LNVS A + L+ Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLF 237 >gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 330 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%) Query: 109 AVHQGLALET-APLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+A+E A + LD AV ++ LL+ LD V DPHN+GA+LRS AF DG Sbjct: 145 AVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVALDQVTDPHNLGAVLRSTGAFGGDG 204 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S +A + K ++GA +P R +NL L+ + G +GL + +E Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVPVARETNLVRTLETLKKEGCFVVGLDGGGETLME 264 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + L+ GAEG GL +ET +A + + +++LN + A ++LY Sbjct: 265 DLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPISQTVESLNAAVATGISLY 318 >gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 251 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 10/186 (5%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIG 148 +VPP+ +DK QG+ E +P+ L D + S+ LL++LD + DPHN+G Sbjct: 61 SVPPEKLDKF---SESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+ VAF DG+I K + + ++KS++GA+EHI R+ N A+ + F Sbjct: 118 AIIRNCVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFW 177 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G + + + LE+ +A+I+G+EG GL T++ + + + II +LN S A Sbjct: 178 IVG-AENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCA 236 Query: 269 AAVALY 274 +AV LY Sbjct: 237 SAVILY 242 >gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] Length = 248 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A + + + L A RNS LL+VL ++DPHNIGAI+R+A A + DG++ Sbjct: 72 HQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLV 131 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +AV+ K+++GAL H+ ++ +L L+ +H G Q + +++ Sbjct: 132 EGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAETNYTDADF 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LGAEG GL P+ E + + M G +++LNVS +A V LY Sbjct: 192 RKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLY 240 >gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101 N ++G H+V A L + + ++ A K R D D L V+ + + + Sbjct: 3 NELIFGFHSVEAILASEPERFVEIYALK---GRDDKRSTPIIDEALKFGISVQYMQRKAL 59 Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 D K G++ HQG+ ++ AP + LDA+ ++ L+VLD + DPHN+GA LRSA Sbjct: 60 DSKSKGEQ--HQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S + K A GA E +P I+++NL L+++ G +G + Sbjct: 118 DAAGVHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 178 ETDNHVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLF 237 >gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 255 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 11/232 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEA 109 LYG+H VSAAL+ + + A R+ A L + +P Q + +G++ Sbjct: 6 LYGIHAVSAALDAEELLELWVAVERRADERI---APLVQKAAEQRLPVQEWRSVALGRKL 62 Query: 110 ---VHQGLA--LETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L P L + L+VLD V DPHN+GA LRSA A D + Sbjct: 63 NTDRHQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A + K+++G+ +P ++NL+ L + GF +G++ + + L Sbjct: 123 ILPRDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYA 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G E KGLR T+E +AH+ M G I++LNVS A + L+ Sbjct: 183 LDLDMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLF 234 >gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 232 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ A RN ++LD + DPHN+G+ Sbjct: 39 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGS 96 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + + G Sbjct: 97 IMRTADATGAHGIIIPKRRAVGLTAAVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWI 156 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + +L M G + +LN S AA Sbjct: 157 AGTDARGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAA 216 Query: 270 AVALY 274 ++ +Y Sbjct: 217 SLLMY 221 >gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] Length = 652 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +VHQG+AL+TA + TLD + LL+ LD + DPHN+GA++RSA A Sbjct: 352 SVHQGIALQTA--AADTLDLSALIEGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGA 409 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S + AK A+GA+EH+P R+ NL +L+K+ G++ IGL+++ Sbjct: 410 HGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVT 469 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 470 LMDVDLEGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATALCVY 524 >gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] Length = 257 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 21/242 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV- 105 + +G+H V L + + +L K + + PV +P +D++V Sbjct: 5 YAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDELVP 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILR 152 G+ HQG+ E + D +R S+ L++VLD V DPHN+GA LR Sbjct: 65 GR---HQGVVAELGDNTAGQSD-LRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A ++ K + +AV+ K A GA E +P +R++NL +L + + G G Sbjct: 121 SADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + L +AL++GAEG G+R T+E + +L M G + +LNVS A V Sbjct: 181 AGEASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVC 240 Query: 273 LY 274 L+ Sbjct: 241 LF 242 >gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 318 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148 +P + +D+ + AVHQGL L+ P + A RNS L + LD V DP N+G Sbjct: 121 IPREELDRKTNR-AVHQGLGLQVPPFEYAHPDDLMAAARNSGEVPLFVALDGVTDPRNLG 179 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G++ +R S +AV ++++G +P +NLT L+ + G Sbjct: 180 AVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWANDGLM 239 Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D +++ E+ D + ++LG+EG+GL +ET + + M +++LN S Sbjct: 240 LVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRLVRETCDATVSIPMAAGVESLNASV 299 Query: 268 AAAVAL 273 AA V L Sbjct: 300 AAGVLL 305 >gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 85/144 (59%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ L++VLD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 85 KDKSLVLVLDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVDI 144 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++NL+D + K+ + G + ++ +E ++K+ L+LG EG G+R K +E Sbjct: 145 SKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVLGNEGSGIRKKVREHCD 204 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 205 KLIKIPMYGQINSLNVSVASGILL 228 >gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 314 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 9/182 (4%) Query: 101 IDKIVGKEAVHQGLA--LETAPLLSP----TLDAVRNS-QLLMVLDHVNDPHNIGAILRS 153 +DK+ G AVHQG+A L P L A R L+++LD V DP N+GA++RS Sbjct: 127 LDKLTGG-AVHQGIAAKLNAYDYADPRDLLALAAERGEPALIVMLDGVTDPRNLGAVIRS 185 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F G++ +R + +A K+++GA +P R++NLT L+++ G IGL+ Sbjct: 186 ASGFGAHGVVIPERRAAQITAAAWKTSAGAAARVPVARVTNLTRTLKELQEEGLMVIGLA 245 Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D L ++ + + +++G+EGKGL ET + + M +++LN AA +A Sbjct: 246 ADGDVELPSSQMLDGPVVVVIGSEGKGLSRLVGETCDELVSIPMSTGLESLNAGVAAGIA 305 Query: 273 LY 274 LY Sbjct: 306 LY 307 >gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 249 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 18/244 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ ++ Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRES 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILR 152 ++K+ G HQG+ P PTL+ A LL+ LD V DPHN+GA +R Sbjct: 60 LEKLAGL-PFHQGVVAAVRPY--PTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211 +A A +I + S S + K A+G E + +I+++NL L + + + IG Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIG 176 Query: 212 -LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + +S P+++ + + +++GAE GLRP TQ ++ M G +++LNVS A Sbjct: 177 TMLDESALPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATG 236 Query: 271 VALY 274 +ALY Sbjct: 237 MALY 240 >gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R] gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R] Length = 313 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 8/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNS------QLLMVLDHVND 143 PV V +D++ G +HQG+ L P + D + N+ + ++LD++ D Sbjct: 114 IPVLEVNKLELDRMTGN-GMHQGIGLAIPPYEYADVHDLIANAATSKKPGMFVILDNITD 172 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RS AF +G+I +R S S +AV ++++G +P + +N+T +++ Sbjct: 173 PRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQ 232 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q +GL + L+ D + +++G+EGKG+ +E ++ + G +++L Sbjct: 233 QNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESL 292 Query: 264 NVSNAAAVAL 273 N S AA V L Sbjct: 293 NASVAAGVVL 302 >gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. W3-18-1] gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella putrefaciens CN-32] gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. W3-18-1] gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens CN-32] Length = 246 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL A+ F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ LD + N++ L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLF 238 >gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 10/192 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 P++TV +DK+V HQG+ AP +LS + ++ ++M LD +N Sbjct: 56 IPIQTVDKTHLDKLVAGTP-HQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVM-LDEIN 113 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+ A GII +R + + +A +A++++GA+E++P R++NL ++++ Sbjct: 114 DPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQL 173 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +G D + + L++G EGKGL +E + L M G + + Sbjct: 174 KELGLWVVGADMDGPEVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGS 233 Query: 263 LNVSNAAAVALY 274 LN S AAA+ +Y Sbjct: 234 LNASVAAALLVY 245 >gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] Length = 266 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 14/174 (8%) Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + P+ +L+ A ++LD + DPHN+G+I+RSA A GII Sbjct: 87 HQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGIEDPHNLGSIIRSADALGVHGII 146 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220 KR + S + ++AK+++GALEHIP +R++NL D L+ W F T D + Sbjct: 147 IPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQLKTKGVWIFATDMAGQDIRSWN 206 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IA+I+G EG+G+ K + A + M G +++LN S AA++ +Y Sbjct: 207 SQ----GPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQSLNASVAASIIMY 256 >gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 242 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 23/239 (9%) Query: 50 FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V+ ALN K++ + L KN LARL + P + Sbjct: 6 LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARL-------KKVNISWTPKTEL 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 +K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A Sbjct: 59 NKLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D II K + + K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 118 ATGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMD 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 178 GTVYSKWNTKG-KVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMY 235 >gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc gasicomitatum LMG 18811] Length = 252 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A T+D + N++ ++LD + DPHN+G+ILR+A A GII Sbjct: 74 HQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADAAGVHGII 133 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A +AK ++GA+EH+P R++NL + + ++ G G + + Sbjct: 134 IPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDMAGEDYRRWD 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ALI+G EGKG+ P ++ SM + M G +++LN S AA++ +Y Sbjct: 194 AKG-ATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMY 243 >gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC2047] Length = 244 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 3/143 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V D HN+GA LRSA A ++ K S ++V++K ASGA E +P+++++ Sbjct: 94 LVLVLDGVTDTHNLGACLRSADAAGVTAVVVPKDNSADLNSVVSKVASGAAETLPFVKVT 153 Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL ++ M G G + D S +PL E ++ ++ +++G+EGKG+R TQE + Sbjct: 154 NLARTMKAMQDRGLWITGTAVDESSRPLYEADLTGPRV-IVMGSEGKGMRRLTQEHCDEL 212 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 ++ M G + +LNVS A V L+ Sbjct: 213 VYIPMAGEVSSLNVSVATGVCLF 235 >gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 250 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETR 240 >gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20] gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20] Length = 253 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 12/173 (6%) Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A T+D A + ++LD + DPHN+G+ILR+A A GII Sbjct: 75 HQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLGSILRTADAAGVHGII 134 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLE 221 KR + +A +AK ++GA+EH+P R++NL + + ++ G G +S D + + Sbjct: 135 IPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVWVFGTDMSGDDYRRWD 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EGKG+ P ++ SM + M G +++LN S AA++ +Y Sbjct: 195 AK---GPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVAASLLIY 244 >gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 26/240 (10%) Query: 52 YGVHTVSAAL-NNPSRKIFQLLATKNALARL--------DWDANLPHPFPVKTVPPQTID 102 +G+H V A L N+P R I + ARL +W + V+ + +D Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVS------VQYASRKALD 61 Query: 103 -KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 K G + HQG+ + P LS L+ L++LD V DPHN+GA LR+A Sbjct: 62 EKSDGGQ--HQGVVAKVKPAKILSDNELSAMLEKT-EVPFLLILDGVTDPHNLGACLRNA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G+I K S + V++K A GA E +P +++NL ++ + G IG + Sbjct: 119 DAAGVHGVIVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAG 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 179 EADCELYQASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLF 238 >gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] Length = 222 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 17/204 (8%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102 N +YGVH V+ AL N K++ + L KN + L + + + K + + Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTE 74 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 AVHQG L + L+ + + LL++LD + DPHN+G+ILR+A A Sbjct: 75 G-----AVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADA 129 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 130 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 189 Query: 217 KKPLEQEIKNDKIALILGAEGKGL 240 P + KIALI+G EGKG+ Sbjct: 190 -TPCHKWNTKGKIALIIGNEGKGI 212 >gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355] Length = 188 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 4/164 (2%) Query: 115 ALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 A E P +S P L L+VLD V DPHN+GA LRSA A +I K S Sbjct: 17 ACEAGPPVSGRRLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSA 76 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 +A K ASGA E++P IR++NL L+ + + +G + ++ + Q +A Sbjct: 77 PLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMA 136 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 137 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 180 >gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 T + F++G H V AAL + K+F K+ + V T P Sbjct: 9 TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151 Q +D ++ + HQG+ L P TLD + +N+ ++LD++ DPHN+G+IL Sbjct: 69 QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + G G Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + D + + + K AL++G EGKG+ P + + + M G +++LN S AA + Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGI 246 Query: 272 ALY 274 +Y Sbjct: 247 LMY 249 >gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] Length = 272 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 13/261 (4%) Query: 31 KKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDA 85 ++M+ Q R T E+ L G H V A+ R I ++L + R D Sbjct: 3 RRMKHTEQHQRGTRPVEHRSDILAGRHAVMEAMK-AGRGINRILLADGLHGSGVRELRDL 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVL 138 + V +D V + HQG+ AP+ + + A R LL++L Sbjct: 62 AREYGVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLL 121 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ Sbjct: 122 DGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQT 181 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + GF G D + ++ + L++G+EG+G+ T+E L M G Sbjct: 182 MRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCG 241 Query: 259 IIKALNVSNAAAVALYITQNH 279 I +LN S A A+ +Y Q Sbjct: 242 KINSLNASAAGAILMYEAQRQ 262 >gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192] gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192] Length = 241 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 9/186 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLL-SPTLDAV----RNSQLLMVLDHVNDPHNIG 148 + Q + + VG H+G ALE TLD + + LL+ LDH+ DPHN+G Sbjct: 51 EVCSAQELSRYVGS---HRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVG 107 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F G+I +R + ++A ++KS+SGA +P + +NL AL + GF Sbjct: 108 AILRSADQFGALGVILPERRAVKDAATISKSSSGADAFVPVVVETNLRRALLHVKEAGFW 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + +P+ + + ++ L+LGAEGKGL +E + + G + + NVS A Sbjct: 168 VYGADMEG-QPVHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVA 226 Query: 269 AAVALY 274 A + +Y Sbjct: 227 AGILMY 232 >gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 253 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96 KS H + E F+YG + AL K++ ++ + ++ Sbjct: 2 KSEHQAPNETGFIYGHYASVEALKGTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQA 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149 P +D++ HQG+ L A T+D + N++ ++LD + DPHN+G+ Sbjct: 62 PKSKLDELT-DGGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLGS 120 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A GII KR + +A +AK ++GA+EH+P R++NL + + ++ G Sbjct: 121 ILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLWV 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + ALI+G EGKG+ P ++ SM + M G +++LN S AA Sbjct: 181 FG-TDMAGEDYRHWDATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVAA 239 Query: 270 AVALY 274 ++ +Y Sbjct: 240 SLLIY 244 >gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] Length = 246 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 LDW V+ VP + +D++ E HQG+ + A +D + + Sbjct: 39 LDWAKR--RGVIVQYVPKRKLDQMA--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAP 94 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VLD + DPHN+GAI+R+A A G+I KR S + +AK+++GA+EHIP R++ Sbjct: 95 FFLVLDELEDPHNLGAIMRTADAVGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVT 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + ++ G G + +K +AL++G+EGKG+ E + Sbjct: 155 NLARTIDELKERGVWVAGTDAAAKDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFR 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G + +LN S AA++ +Y Sbjct: 215 LPMRGHVTSLNASVAASLLMY 235 >gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] Length = 253 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKIVG 106 L G+H + AL RK + +L +K+ + ARL + PV+ T+D + Sbjct: 10 ILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTMTLDALT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+A +P + + + +++ ++V++ + DP N GA++R+A+ Sbjct: 69 DNARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIRTALCAGV 128 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D I+ K S S S ++++++GA+EH I+N L+++ + GF GL P Sbjct: 129 DHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGLDGQGTTP 188 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + L++G E KG+RP ++ + L + + +LN S A +A+Y Sbjct: 189 LFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIAMY 243 >gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 248 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 80/140 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD V DPHN+GA R A A II K + +A + K A G E +P+I ++ Sbjct: 99 LLLILDGVEDPHNLGACFRVADAMGVHAIICPKDSAVGVNATVRKVACGGAESVPFIAVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + G IG ++K L QE IA++LG+EGKG+R T+E S+ Sbjct: 159 NIGRTIRTLKDQGLFIIGTDGEAKHNLYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVS 218 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G +++LNVS A+ + L Sbjct: 219 IPMFGQVESLNVSVASGICL 238 >gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 272 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 7/198 (3%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141 H V TV +D +V ++ HQG AP+ ++ V LL++LD + Sbjct: 68 HGIMVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGI 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRA 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G ++ ++ + L++G+EG+G+ T++ L M G I Sbjct: 188 LKEQGFWIAGADMGGEEIYDRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKIN 247 Query: 262 ALNVSNAAAVALYITQNH 279 +LN S A A+ +Y Q Sbjct: 248 SLNASVAGAILMYEAQRQ 265 >gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 259 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 T + F++G H V AAL + K+F K+ + V T P Sbjct: 9 TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151 Q +D ++ + HQG+ L P TLD + +N+ ++LD++ DPHN+G+IL Sbjct: 69 QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + G G Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + D + + + K AL++G EGKG+ P + + + M G +++LN S AA + Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGI 246 Query: 272 ALY 274 +Y Sbjct: 247 LMY 249 >gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] Length = 250 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 9/173 (5%) Query: 111 HQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + AP +D + R + L++LD + DPHN+G+ILR+A G+I Sbjct: 68 HQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAECTGVHGVI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S + +A ++K+++GA+E++P R++NL ++++ G +G +K+ + + Sbjct: 128 IPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVGAKEEMYRS 187 Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++G E KG+ +ET + L M G + +LN S AA V +Y Sbjct: 188 GNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIMY 240 >gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] Length = 326 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 11/177 (6%) Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+A+E P L+ R + L++ LD V DPHN+GA++RSA AF Sbjct: 140 AVHQGVAIEVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFG 199 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG++ +R S +A + K ++GA +P R+ NL AL K+ + G+ +GL Sbjct: 200 ADGVVVPERRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDT 259 Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E + I L+ G+EGKGL T+ET ++A + + +++LNV+ A +ALY Sbjct: 260 AIEDISFADAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALY 316 >gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei LC2W] gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei BD-II] Length = 259 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 T + F++G H V AAL + K+F K+ + V T P Sbjct: 9 TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151 Q +D ++ + HQG+ L P TLD + +N+ ++LD++ DPHN+G+IL Sbjct: 69 QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + G Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERSMWVFG 187 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + D + + + K AL++G EGKG+ P + +M + M G +++LN S AA + Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLNASVAAGI 246 Query: 272 ALY 274 +Y Sbjct: 247 LMY 249 >gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri DSM 20016] gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V VP +D + ++ HQG+ L A T+D + ++ ++LD + DPH Sbjct: 53 VSNVPKNKLDLMTDRQN-HQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII +R + ++V+AK+++GA+EH+P R++NL +++ Sbjct: 112 NLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQER 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G K + + +AL++G EGKG+ ++T M + M G +++LN Sbjct: 172 GVWLFGTDMKGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNA 230 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 231 SVAASLLIY 239 >gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 14/195 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQL--LMVLDH 140 PV V +D+I G +AVHQGLAL+ P LL T+ QL L+ LD Sbjct: 154 IPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTIS---RGQLPLLVALDG 210 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+GAI+RS AF G+I +R S +A K+++GA P SNLT L+ Sbjct: 211 ITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLK 270 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G +GL L + D+ I +++G+EGKGL ET ++ + + Sbjct: 271 ALKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTVVSIPIGAS 330 Query: 260 IKALNVSNAAAVALY 274 ++LN AA+V LY Sbjct: 331 TESLNAGIAASVTLY 345 >gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V VP +D + ++ HQG+ L A T+D + ++ ++LD + DPH Sbjct: 53 VSNVPKNKLDLMTDRQN-HQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII +R + ++V+AK+++GA+EH+P R++NL +++ Sbjct: 112 NLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQER 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G K + + +AL++G EGKG+ ++T M + M G +++LN Sbjct: 172 GVWLFGTDMKGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNA 230 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 231 SVAASLLIY 239 >gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces flavogriseus ATCC 33331] Length = 318 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 14/175 (8%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQGL L+ P L S D N++ L++ LD V DP N+GAI+RS AF Sbjct: 140 HQGLVLQVPPYEYAHPEDLTSAAYD---NNEDPLIVALDGVTDPRNLGAIVRSVSAFGGH 196 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R + +A KS++G P R++NLT AL+ G +GL++D + + Sbjct: 197 GVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTV 256 Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 257 EDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311 >gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aurantiacus J-10-fl] gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 15/238 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKI 104 LYG + V +L R++F L ++ A + + PV+ + QT+D+ Sbjct: 5 LLYGRNAVRESLR-ARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDRR 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-------DHVNDPHNIGAILRSAVAF 157 + ++A HQG+ LE P LD N+ DH+ DP NIG +LR+A A Sbjct: 64 L-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEAV 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 C G++ R + + + ++SGA+EH+ ++NL ++++ G +GL D + Sbjct: 123 GCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDEQ 182 Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D +AL++GAEG G+ +E + L + G + +LN + A ++A+Y Sbjct: 183 AQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIY 240 >gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia psychrerythraea 34H] Length = 251 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 14/238 (5%) Query: 50 FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 ++G+H V+A +N P R I L R+ NL + + T + +D+ Sbjct: 7 LVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALDEKSE 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+ P S T + + + + ++LD V DPHN+GA LR+A A Sbjct: 67 GEQ-HQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRNADA 125 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 II K + + + K A GA+E +P ++++NL+ ++++ G +G + ++ Sbjct: 126 AGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTAGET 185 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +AL++GAEGKG+R T+E + L M G + +LNVS A + L+ Sbjct: 186 DTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICLF 243 >gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] Length = 250 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 23/244 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQ 99 E + G H+V+ AL + R I ++ +NA L LP ++ V + Sbjct: 4 EEEVVAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLGIVIQHVDKR 58 Query: 100 TIDKIV-GKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAIL 151 +D++V G + HQG+ + AP + D ++ ++ L++LD + DPHN+G+IL Sbjct: 59 KLDQMVPGVQ--HQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSIL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G++ KR S +A ++K+++GA+E++P R++NL + ++ G +G Sbjct: 117 RTADCTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVG 176 Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D+ + L + E+ + +A+++G E KG+ +E + L M G I +LN S AA Sbjct: 177 TVVDAVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAG 236 Query: 271 VALY 274 V +Y Sbjct: 237 VVMY 240 >gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 259 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 T + F++G H V AAL + K+F K+ + V T P Sbjct: 9 TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151 Q +D ++ + HQG+ L P TLD + +N+ ++LD++ DPHN+G+IL Sbjct: 69 QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + G G Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + D + + + K AL++G EGKG+ P + + + M G +++LN S AA + Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGI 246 Query: 272 ALY 274 +Y Sbjct: 247 LMY 249 >gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] Length = 323 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 6/189 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD-AVRNSQLLMVLDHVNDPH 145 PV+ VP Q +D + HQG+ + T P LS L+ A L++VLDHV D Sbjct: 124 VPVERVPRQVLDAL-SSHGAHQGVIVRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEG 182 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA G++ + K+++GA+ H+P R+SN++ AL+++ + Sbjct: 183 NFGAIVRSAEVVGAAGVVIANARAAQVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAA 242 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF T G + + + ++AL++G+EG G+ ET L G I++LNV Sbjct: 243 GFWTCGATEHAADDVWSAPLGGRLALVMGSEGAGISRLVLETCDFACKLPQRGKIESLNV 302 Query: 266 SNAAAVALY 274 + A V Y Sbjct: 303 AQATTVMCY 311 >gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] Length = 248 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP+ +D + + L++LD + DPHN+GAILR+A A G++ Sbjct: 67 HQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADATGVHGVL 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S SA +AK+++GA+E++P RI N+ L+K+ G +G K + Sbjct: 127 LPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGDKAYYET 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++G+EG+G+ T+E + + M G + +LN S A ++ LY Sbjct: 187 DLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILY 237 >gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V V +D I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAI-SK 76 Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251 >gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis 12822] gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis] gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS] Length = 245 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 86/153 (56%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + LD + LL++LD V DPHN+GA LR+A A +I + + +A + + A Sbjct: 85 IDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVAC 144 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA + +PY+ ++NL ++++ +G + + + Q +A ++GAEG+G+R Sbjct: 145 GAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMR 204 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ET + + M G +++LNVS A+AV LY Sbjct: 205 RLTRETCDQLVRIPMLGSVESLNVSVASAVCLY 237 >gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] Length = 252 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 9/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVND 143 P++ + Q +D+ + ++A HQG+ LET P LD A R + LL++LDH+ D Sbjct: 50 IPIERIERQILDRQL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQD 108 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+A A C GII R + + + ++SGA+EH+ ++NL+ ++++ Sbjct: 109 PQNLGTLLRTAEAVGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQ 168 Query: 204 SWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +GL D + + ++ N + L++GAEG G+ +E + L + G I + Sbjct: 169 HNGIWVVGLEQDETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGS 228 Query: 263 LNVSNAAAVALY 274 LN + A ++A+Y Sbjct: 229 LNAAVAGSIAIY 240 >gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] Length = 318 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P T A N + L++ LD V DP N+GAI+RS AF G++ Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A KS++G P R++NLT AL+ G +GL++D + +E Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 260 EQLSGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311 >gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201] gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 322 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 11/178 (6%) Query: 108 EAVHQGLALETAPLLSPTLDAVRNS----------QLLMVLDHVNDPHNIGAILRSAVAF 157 +A+HQG+ L+ P P D + S LL+ D + DP N+GAI+RS AF Sbjct: 136 DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAADGITDPRNLGAIIRSVSAF 195 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + DG+I +R S +A K++SGA +P + +NLT LQ G+ +GL Sbjct: 196 AGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCKKQGYFVVGLDGGGD 255 Query: 218 KPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q E+ + + +++G+EGKGL E ++ + + +++LN S A + LY Sbjct: 256 MSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIESAMESLNASMAVGITLY 313 >gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] Length = 335 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 9/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNS---QLLMVLDHVND 143 +P+ V +D++ +VHQG+A++ P LDA S L++ LD V D Sbjct: 136 YPLLEVSRTELDRLT-DGSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTD 194 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LRSA AF G++ +R + +A K ++GA +P R++NL LQ Sbjct: 195 PRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYK 254 Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +GL + + E D + L++G+EGKGL +E ++A + + +++ Sbjct: 255 EAGVFVVGLDGGGDQSVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVES 314 Query: 263 LNVSNAAAVALY 274 LN AA +ALY Sbjct: 315 LNAGVAAGIALY 326 >gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] Length = 285 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T +D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 246 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + +YG+ V AL K+F + L R PV+ VP + ++ Sbjct: 2 QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ +P+ L ++ + L ++LDH++D N GAI+R+A Sbjct: 62 RLTKKN--HQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR S S +A K+++GA+ +P ++ NL DA+ + G + + + Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L E + A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLY 238 >gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] Length = 245 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144 PV+ VP + ++++ K HQG+ +P+ L ++ + L +VLDH++D Sbjct: 51 PVQYVPVEKLNRLTKKN--HQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDV 108 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GAI+R+A GII KR S S +A K+++GA+ +P ++ NL DA+ + Sbjct: 109 RNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQG 168 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + + + L E A+++GAE G+ P + S A L M G I +LN Sbjct: 169 SGIRVVATTEKTNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLN 228 Query: 265 VSNAAAVALY 274 VS A AV LY Sbjct: 229 VSVACAVFLY 238 >gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76] gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4000] gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0017] gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0027] gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2141] gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4244] gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0012] gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0031] gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0043] gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0312] gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0645] gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1302] gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1341] gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1342] gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1346] gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0630] gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Enterococcus faecalis 62] gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1467] Length = 285 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T +D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X514] gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X513] Length = 247 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+RSA AF GII KR + +A + K+++GA+EH+ ++S Sbjct: 97 FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + G +G +++K E+ + +A ++G EGKG+ + + Sbjct: 157 NINNTIRDLKERGLWIVGTDVNAEKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVK 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA++ +Y Sbjct: 217 IPMKGKINSLNASVAASILIY 237 >gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 234 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 86/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E ++KI L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKIILVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228 >gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380] gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 246 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 14/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD--WDANLPHPFPVKTVPPQTIDKIVG 106 +YGV+ V AL + RK +LL A +RL +A ++++ + +D + Sbjct: 4 LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 + A HQG+AL ++ L LD RN+ +++VLD + DPHN+GA+ RSA A C Sbjct: 63 EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SK 217 GI+ K S +A K+++GAL ++P R++N+ +L+ GF GL+ D S+ Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++ + + L++G EGKGLR ++ ++ + M G + +LN S A VAL+ Sbjct: 183 SLYDTDLRGN-VVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALF 238 >gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 248 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPH 145 + TVP +D++ + HQG+AL A +D A R ++ ++LD + DPH Sbjct: 53 ISTVPKTKLDQLTDHQN-HQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII +R + ++V+AK+++GALEH+P R++NL ++++ + Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTVKELKNR 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + + +AL++G EGKG+ ++ M + M G +++LN Sbjct: 172 GVWLFGTDMKGRDYRTWD-AHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNA 230 Query: 266 SNAAAVALY 274 S AA + +Y Sbjct: 231 SVAAGLLIY 239 >gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 247 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ E +HQG+ A +D + + ++LD + DPH Sbjct: 50 VQFVPKKKLDQMA--EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + +A +AK+++GA+EHIP R++NL + ++ Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEK 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + + + L++G+EGKG+ ++ + HL M G + +LN Sbjct: 168 GVWIAGTDAKGSEDYRRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNA 227 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 228 SVAAALLMY 236 >gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens 200] Length = 246 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++G+H V A L + +I +L L RL A F ++ + +D Sbjct: 6 IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALDD-KA 64 Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + HQG+ ++ A +L+ LD + N++ L++LD V DPHN+GA LR+A A Sbjct: 65 ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ L Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLF 238 >gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK 1622] Length = 282 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82 R R +++ + + F+YGV+ V AAL ++ +L + L AR Sbjct: 10 RGGERASEEVPQRASRGERGGGEASRFVYGVNPVLAALRARPDEVERLFLVEGQLGARAA 69 Query: 83 WDA-NLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLD-------AVRNS 132 + + F ++ V T +++ + + VHQG+ +E L+ A+ Sbjct: 70 GELLSRAREFGIR-VEKVTRERLGTLAEGGVHQGVVVELRGFKYAELEDLLEAAKALGQP 128 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD + DPHN+GAI+RSA A G++ K + + +AK+++GA+EH R+ Sbjct: 129 PLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARV 188 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N++ AL+++ G D+K+P+ + +AL++GAEG G+R + Sbjct: 189 VNISRALEELKEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRL 248 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G + +LN S +A + LY Sbjct: 249 RIPMAGQVGSLNASVSAGILLY 270 >gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 85/144 (59%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 85 KDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNI 144 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++NL+D + K+ + G + ++ +E ++K+ L+LG EG G+R K +E Sbjct: 145 SKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVLGNEGSGIRKKVREHCD 204 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 205 KLIKIPMYGQINSLNVSVASGILL 228 >gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] Length = 247 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 29/246 (11%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI--- 101 N ++G+H V A L ++PSR I + RL LP + + V Q Sbjct: 3 NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERL-----LPILNELQMLGVTMQQAGRK 57 Query: 102 ---DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILR 152 DK+ G A HQG+ P LDA+ + + LL++LD V DPHN+GA LR Sbjct: 58 ALDDKVHG--ANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLR 115 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQ 208 +A A II K S +A +K A GA E +P +R++NL ++ + W Sbjct: 116 NADAAGAVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIW--- 172 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G + ++ + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A Sbjct: 173 IVGTAGEATHDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVA 232 Query: 269 AAVALY 274 + + L+ Sbjct: 233 SGICLF 238 >gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] Length = 256 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 16/196 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------------LLMVL 138 PV +P +D++V HQG+ + D +R S+ L++VL Sbjct: 49 PVSRLPRVKLDELVSGR--HQGVVAQLGENTEEQAD-LRWSEEQLARAVTYNPRALVLVL 105 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN+GA LRSA A ++ K + +AV+ K A GA E +P +R++NL + Sbjct: 106 DGVTDPHNLGACLRSADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARS 165 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + + G G + ++ + L +AL++GAEG G+R T+E + L M G Sbjct: 166 LDALKAAGVWIYGTAGEAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAG 225 Query: 259 IIKALNVSNAAAVALY 274 + +LNVS A V L+ Sbjct: 226 SVTSLNVSVATGVCLF 241 >gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640] gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06] Length = 250 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 251 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 103/189 (54%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V T + +D++V + HQG+ A +D + + +++LD + DPH Sbjct: 50 VTTANRKKLDQLVSTDN-HQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A G+I KR S S +A +AK+++GA+ ++P R++NL ++++ Sbjct: 109 NLGSIMRTADAVGAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKER 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + +K+ Q +A+++G+EGKG+ +E + L M G + +LN Sbjct: 169 GVWIAGTDASAKQDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNA 228 Query: 266 SNAAAVALY 274 S AAA+ +Y Sbjct: 229 SVAAALLMY 237 >gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec] gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec] Length = 386 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G A HQGLAL P D V L++ LD V DP N+GA++RSA Sbjct: 195 LDRLCGT-APHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVRSA 253 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R + +A K+++GA +P R NLT L+ G +GL++ Sbjct: 254 AAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLAA 313 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L++ ++ D + L++G+EGKGL E + M G +++LN A +AL Sbjct: 314 DGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIAL 373 >gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63] Length = 252 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 12/247 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 N++ +T Q ++ + G + VS A+ N P KI K+ PVK Sbjct: 3 NERFENTEQKPDV-IAGRNPVSEAVRSNRPIDKILVAKGEKSGAIVGILAKARDKKIPVK 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 V +D + G A HQG+ A T+D + + ++VLD V DPHN+ Sbjct: 62 EVDRTKLDYVSGG-ATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A GII KR S S +AK+++GA+E++ R++N+ L ++ G Sbjct: 121 GAIIRTAECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTNIAVTLDELKEKGV 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G D E + A+++G EGKG+ +E +A L M G I +LN S Sbjct: 181 WVYGADMDGTDYDECDFSG-ACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASV 239 Query: 268 AAAVALY 274 AA + +Y Sbjct: 240 AAGILMY 246 >gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] Length = 285 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGMDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 112/239 (46%), Gaps = 22/239 (9%) Query: 51 LYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV 105 +YG+H V A L P R ++F L ++ RL LP H + V Q ++ Sbjct: 15 IYGIHAVQALLERAPERFQEVFILKGREDK--RL-----LPLIHALESQGVVIQLANRQY 67 Query: 106 GKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 E AVHQG+ P P L A + L++LD V DPHN+GA LRSA Sbjct: 68 LDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSAD 127 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A K A GA E +P IR++NL + + +G + + Sbjct: 128 AAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGE 187 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L Q ++AL+ GAEG+G R T+E + + G + +LNVS A + L+ Sbjct: 188 ADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLF 246 >gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] Length = 234 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 86/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E ++KI L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKIILVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228 >gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] Length = 249 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] Length = 249 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] Length = 249 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFP-----VKTVPPQTID 102 +YG+H V A L+ + + ++ K R +P H V+ Q +D Sbjct: 4 IIYGIHAVKALLDRDASRFKEVYILKGREDR----RLMPIIHEIESLGIVVQVANRQWMD 59 Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ + P P ++ L+VLD V DPHN+GA LRSA A Sbjct: 60 AQT-EGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A K A GA E +P R++NL L+ + + +G + ++ Sbjct: 119 AGVHAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 DHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLF 236 >gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 249 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 + YGVH+V + L ++ L K RL L PF V+ +++K+ G Sbjct: 6 YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG 65 Query: 107 KEAVHQGL--ALETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A+ P+L+ LD + LL+ LD V DPHN+GA +R+A A Sbjct: 66 L-PFHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAAMGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG-LSSDSKK 218 +I + S S + K A+G E + +I+++NL L + + + IG + +S Sbjct: 125 AVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESAL 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PL++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 185 PLQKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240 >gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] Length = 247 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101 N ++G H+V A L + + ++ A K R D D V+ + + + Sbjct: 3 NELIFGFHSVEAILESEPERFVEIYALK---GRDDKRSTPIIDEARKFGISVQFMQRKAL 59 Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154 D K G++ HQG+ ++ AP + LDA+ ++ L+VLD + DPHN+GA LRSA Sbjct: 60 DSKSKGEQ--HQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S + K A GA E +P I+++NL L+++ G +G + Sbjct: 118 DAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 178 ETDNHVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLF 237 >gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 246 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 11/193 (5%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQG-LAL----ETAPLLSPTLDAVRNSQLLMVLDHVND 143 HP PV + +D + + HQG LA+ + A + LD + L++LD V D Sbjct: 53 HPVPV-----ERLDGL-ARGTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTD 106 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA LR+A A +I + + ++ + + A GA + +PYI ++NL ++++ Sbjct: 107 PHNLGACLRTADAAGVHAVIAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELK 166 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +G + + +A ++GAEG+G+R T+ET + ++ M G +++L Sbjct: 167 ERGVWLVGTDDQASHDMHAIDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESL 226 Query: 264 NVSNAAAVALYIT 276 NVS A+AV LY T Sbjct: 227 NVSVASAVCLYET 239 >gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] Length = 246 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 9/234 (3%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++YG+ V A+ K+F + L + + VP + +D++ + Sbjct: 6 YIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDRLAKQ 65 Query: 108 EAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P+ L P +++V + + L ++LD ++D N GAI+R+A D Sbjct: 66 HNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASCTGVD 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ + +A K+++GA +P I++ +L DA+ + + G Q I + +K L Sbjct: 126 GIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKAKNDL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+++G+E G+ P + A + A L M G I +LNVS A V LY Sbjct: 186 YEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLY 239 >gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella amazonensis SB2B] gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B] Length = 240 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 ++G+H V + L + ++ +L L T R+ + + +K +T+D+ + Sbjct: 1 MFGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDE-KAE 59 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + P L LDA + L++LD V DPHN+GA LR+A A Sbjct: 60 STQHQGIIIRVRPAKVLTENDLEALLDAT-ETPFLLILDGVTDPHNLGACLRNADAAGVH 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + ++K A GA E +P +++NL ++++ G G + ++ L Sbjct: 119 GVIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTL 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 179 YEANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLF 232 >gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] Length = 336 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 14/181 (7%) Query: 108 EAVHQGLALETAPLLSP--------TLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154 +AVHQGLAL+ P P T+D ++NS L++ LD + DP N+GAI+RS Sbjct: 138 DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGITDPRNLGAIIRSV 197 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF+ +I +R S +A K+++GA +P R NL AL+ G+ +GL Sbjct: 198 SAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALESFKGMGYFVLGLDG 257 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D L + + + +++G+EGKGL +E + + + +++LN S A + L Sbjct: 258 DGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITL 317 Query: 274 Y 274 Y Sbjct: 318 Y 318 >gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309B] gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309A] Length = 282 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 43 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 100 Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 101 HGVHQGMVLAITAYQYLTLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVD 160 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T +D + Sbjct: 161 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 220 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 221 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 273 >gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 252 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 15/245 (6%) Query: 40 SRHTSQPENLFLYGVHTVSAAL--NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTV 96 S T QP+ F+ G H A+L ++ K+F Q + + ++ A ++ V Sbjct: 4 SNETQQPD--FVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAK-KQGLVIQRV 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGA 149 +D + + HQG+ L A LD A +++LD + DPHN+G+ Sbjct: 61 TKSKLDTLSNGQN-HQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A G+I KR + ++ +AK+++GA+E +P +++SNL +A++++ G Sbjct: 120 ILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWI 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K + LI+G EGKG+ T++ M + M G I++LN S AA Sbjct: 180 FGTDMKGTDYRRWDAKG-AVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAA 238 Query: 270 AVALY 274 + +Y Sbjct: 239 GLLIY 243 >gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] Length = 212 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 19 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 77 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 137 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196 Query: 270 AVALY 274 ++ +Y Sbjct: 197 SLLMY 201 >gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPH 145 +K V + +D + G E VHQG+ + P +S LD + +++LD V DPH Sbjct: 105 IKEVDKRKLDSMCGGE-VHQGVIAKVTPYKYSEVSDILDLAEKRGEAPFIVILDEVEDPH 163 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A F GII KR S S S + KS+ GA+EH+ +++NL ++++ Sbjct: 164 NLGSIVRTAELFGVHGIILPKRRSASVSTTVYKSSVGAIEHVKIAKVTNLNSTIEELKEK 223 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G +++ Q A+I+G EG+G+ T E + + M G I +LN Sbjct: 224 GIWIYGADIRAEEYSYQVDFGGPCAVIIGNEGRGISKLTVEKCDKLIKIPMVGKINSLNA 283 Query: 266 SNAAAVALY 274 S A + +Y Sbjct: 284 SVAGGIIMY 292 >gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] Length = 246 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 13/191 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V++VP + ID + + HQG+A A +LD A ++LD + DPH Sbjct: 50 VQSVPKKKIDGLT--DTNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A G+I KR + + V+AK+++GA+EH+P +RI+NL+ + ++ Sbjct: 108 NLGSIMRTADAIGVHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKR 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G G +D+K+ ++ + +A+I+G+EGKG+ +E + L M G + +L Sbjct: 168 GVWIAG--TDAKESVDYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSL 225 Query: 264 NVSNAAAVALY 274 N S AA++ +Y Sbjct: 226 NASVAASLLMY 236 >gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] Length = 268 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 14/239 (5%) Query: 50 FLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTI-DKIV 105 +L G H V AAL +P R + + R+ L ++ P + D++ Sbjct: 12 WLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPEKVFADRVR 71 Query: 106 GKE--AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 A HQG+ P L LD + L++LD V DPHN+GA LRSA A Sbjct: 72 ADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLGACLRSAEA 131 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I+ K + + K+ASGA E +P+I+++NL L + S +G + Sbjct: 132 AGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIWIVGAAGGG 191 Query: 217 KKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L E + + +AL++G+EG+GLR TQE + + M +++LNVS AAAV L+ Sbjct: 192 MVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLF 250 >gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2137] Length = 285 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T +D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 249 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 18/244 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100 ++PE + YGVH+V + L ++ L K RL L PF V+ + Sbjct: 2 AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILR 152 ++K+ G HQG+ P PTL+ A LL+ LD V DPHN+GA +R Sbjct: 60 LEKLAGL-PFHQGVVAAVRP--HPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211 +A A +I + S S + K A+G E + +I+++NL L + + + IG Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIG 176 Query: 212 -LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + +S P+++ + + +++GAE GLRP TQ ++ M G +++LNVS A Sbjct: 177 TMLDESAMPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATG 236 Query: 271 VALY 274 +ALY Sbjct: 237 MALY 240 >gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila SL1] Length = 271 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 87/141 (61%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GA +RSA A G++ + + + S + K+A+GA++ IP+ +++ Sbjct: 117 LLLVLDRVQDPHNLGACMRSAAAAGAHGVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVT 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL LQ++ G +G + +++K + +AL+LG EG+GLR T+E Sbjct: 177 NLARTLQQLRDAGVHVVGAAGEAEKSCYEVDLRGPLALVLGGEGEGLRRLTRERCDERVA 236 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG +++LNVS AA V L+ Sbjct: 237 IPMPGSMESLNVSVAAGVLLF 257 >gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 259 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 22/260 (8%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 HR KK+ S +QKS +L+G V L I +LL + A ++ D Sbjct: 4 HRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHEDCR 54 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLD 139 P + + ++++ K HQG+ P LD + ++ LL++LD Sbjct: 55 QLAEERDIPCRIESARRLEQL-SKAKDHQGILARLGPFPYAALDEILGQLTSASLLLMLD 113 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R+A A +G+I R + S+ + +S++GA+ HIP + NL D L Sbjct: 114 RVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQDTL 173 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + Q++ + + ++ E + + LI+G E +G+ P E ++ H+ Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTVHI 233 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + AA + ++ Sbjct: 234 PMQGAVESLNAAVAAGILMF 253 >gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] Length = 250 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis EAS054] Length = 197 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 6 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175 >gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] Length = 247 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+RSA AF GII KR + +A + K+++GA+EH+ ++S Sbjct: 97 FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + G +G ++ K E+ + +A+++G+EGKG+ + + Sbjct: 157 NINNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA++ +Y Sbjct: 217 IPMKGKINSLNASVAASILIY 237 >gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] Length = 249 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETR 240 >gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] Length = 246 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 19/244 (7%) Query: 46 PENLFLYGVHTVSAAL-NNPS--RKIFQLLATKN-----ALARLDWDANLPHPFPVKTVP 97 P F++G H V++ L NP+ R+IF + AT+ L +L + N+ V + Sbjct: 2 PSTRFIFGFHAVTSRLRQNPNSIREIF-IDATRTDQRAQELIKLAENKNIH----VISCT 56 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + G + HQG+ + LD + L+VLD + DPHN+GA LR Sbjct: 57 GSKLTSMSGNDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLR 115 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A AF +I K + + + K +SGA + +PYI ++NL L+++ G G Sbjct: 116 VADAFGVHAVIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGT 175 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + D+ L + +A + G+E KGLR T+E + + M G I++LNV+ +A + Sbjct: 176 AEDAAHDLTHFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGIC 235 Query: 273 LYIT 276 L+ T Sbjct: 236 LFET 239 >gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] Length = 318 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P T A N++ L++ LD V DP N+GAI+RS AF G++ Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A KS++G P R++NLT AL+ G +GL++D + +E Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 260 EELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311 >gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 321 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQL---LMVLDHVNDPHNIGAILRS 153 +D++ G A+HQGLAL+ L NS L ++ LD V DP N+GA++RS Sbjct: 132 LDRMTGG-AMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVTDPRNLGAVIRS 190 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G+I +R S +AV ++++G +P R NLT L+ + S G +GL Sbjct: 191 AAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDLKSEGLMVVGLD 250 Query: 214 SDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +DS E E+ + +++G+EG+GL +ET + M G +++LN S AA + Sbjct: 251 ADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVESLNASVAAGIV 310 Query: 273 L 273 L Sbjct: 311 L 311 >gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 234 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 82/140 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ +++ Sbjct: 89 LVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNISKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+D + K+ + G + ++ +E DK+ L+LG EG G+R K +E + Sbjct: 149 NLSDTINKLKKLDYWVYGAAGEANINYNEEDYPDKVVLVLGNEGSGIRKKVREHCDKLIK 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A+ + L Sbjct: 209 IPMYGQINSLNVSVASGILL 228 >gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] Length = 244 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144 PV+ VP + ++++ K HQG+ +P+ L ++ + L +VLDH++D Sbjct: 50 PVQYVPVEKLNRLTKKN--HQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDV 107 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GAI+R+A GII KR S S +A K+++GA+ +P ++ NL DA+ + Sbjct: 108 RNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQG 167 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + + + L E A+++GAE G+ P + S A L M G I +LN Sbjct: 168 SGIRVVAATEKTSQLLYTEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLN 227 Query: 265 VSNAAAVALY 274 VS A AV LY Sbjct: 228 VSVACAVFLY 237 >gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 245 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 16/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIV 105 F+ G H+V AL + R I ++ +NA + + L H V+TV + +D++ Sbjct: 4 FIGGKHSVLEALRS-GRTINKIWIAENA-GKQQAGSVLSEAKKHGIIVQTVDRRKLDQMA 61 Query: 106 GKEAV-HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 E + HQG+ + A +++ + N +++LD + DPHN+G+ILR+A Sbjct: 62 --EGIQHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S +A ++K+++GA+E++P R++NL ++++ G G + Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + IAL++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMY 236 >gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] Length = 247 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+RSA AF GII KR + +A + K+++GA+EH+ ++S Sbjct: 97 FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + G +G ++ K E+ + +A+++G+EGKG+ + + Sbjct: 157 NINNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA++ +Y Sbjct: 217 IPMKGKINSLNASVAASILIY 237 >gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 280 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 89 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 146 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 147 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 206 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 207 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 258 >gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 296 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 105 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 162 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 163 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 222 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 223 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 274 >gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] Length = 231 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 81/144 (56%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N L +VLD V DPHN+GA LRSA ++ K S + V+ K A GA E +P + Sbjct: 80 NKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSVGLTPVVQKVACGAAESVPLV 139 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++NLT L+K+ G +G + ++++ + + L++GAEGKG+R T++ Sbjct: 140 MVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLVLVMGAEGKGIRQLTRKQCDY 199 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 +A L M G + +LNVS A V L+ Sbjct: 200 LAKLPMAGEVSSLNVSVATGVCLF 223 >gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae ATCC 23330] Length = 248 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 13/238 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK----I 104 +YG H ++A L + I +L +N A AR + + V D+ Sbjct: 6 LIYGFHAINARLWQNPKSITELYVLENKADART---REVLEKAAAENVKLHFADQDRLNT 62 Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 63 MAKGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ G +G Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGDAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 183 LFHYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240 >gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396] gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396] Length = 238 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 80/138 (57%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DPHN+GA LRSA A +I K S +A K A GA E P IR++NL Sbjct: 92 VLDGVTDPHNLGACLRSANAAGVHAVIVPKDKSAPLNAAARKVACGAAEVTPLIRVTNLA 151 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L+ + ++G +G + ++++ L Q +A+++GAE KG+R T+E S+ ++ M Sbjct: 152 RTLKHIQTYGVWLVGAAGEAEQSLYQADLKGSVAIVMGAEDKGMRRLTRENCDSLVNIPM 211 Query: 257 PGIIKALNVSNAAAVALY 274 G + +LNVS A V L+ Sbjct: 212 LGEVSSLNVSVATGVCLF 229 >gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica PV-4] gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica PV-4] Length = 246 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQTID 102 F +G+H V A L N ++ ++ + D +P + V+ + +D Sbjct: 6 FTFGIHAVEALLKNSPERVIEMWVLQGR----DDQRLMPLIAMAAEYGVSVQQASRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVA 156 G HQG+ + P + + + L++LD V DPHN+GA LR+A A Sbjct: 62 DKAGSSQ-HQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + IA+ +GAE KGLR T+E+ S+A + M G + +LNVS A + L+ Sbjct: 181 EHDLYKADLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLF 238 >gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 86/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E ++K+ L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKVILVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228 >gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] Length = 376 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P P D V + + LL+ LD V DP N+GA++RSA Sbjct: 187 LDRMTGG-VLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLGAVIRSA 245 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT +L+ GF +GL + Sbjct: 246 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMVVGLDA 305 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D L + E + +++G+EG+GL ET + M +++LN S AAAV L Sbjct: 306 DGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVAAAVTL 365 >gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus oleovorans Hxd3] Length = 256 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106 LYG+H V AA+ RK+ L R L H PV +P + ++++ G Sbjct: 10 LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEIPARDLEQMTG 69 Query: 107 KEAVHQGLALETA--PL--LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+A + P L+ L AV ++ ++V D + DPHN+GA+ R+A+ Sbjct: 70 GK-VHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGALARTALCAGVH 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + S + K+++GALE +P R +N+ L + G GL ++ + Sbjct: 129 GLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIAGLDGRGEQTI 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G EG+G+R + + + ++ +LN S A AVA+Y Sbjct: 189 YDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMY 242 >gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 24/269 (8%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKN-- 76 A LR NH K+ QS ++ E + G + V L P+ ++ L T Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100 Query: 77 ----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSP 124 ++AR D+ + + VP +D++ +HQG+AL+ P LL+ Sbjct: 101 RVTESVARA-ADSGIS----ILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLAT 154 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L + LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA Sbjct: 155 ALGS--PPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAA 212 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 IP R +NLT L+ G + IGL + ++ D + +++G+EGKGL Sbjct: 213 ARIPVARATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLV 272 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + M G ++LN S AA V L Sbjct: 273 RQNCDEVVSIPMAGQAESLNASVAAGVVL 301 >gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium profundum SS9] gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 245 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 24/243 (9%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI------ 101 N ++G+H V A L ++ ++ K+ R D D +P +K + TI Sbjct: 3 NDMIFGIHAVKAVLATDPVRLIEVFVLKD---RQD-DRLMPLLTELKDLGI-TIQHAGRK 57 Query: 102 ---DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 DK K A HQG+ P L L+ N LL++LD V DPHN+GA L Sbjct: 58 ALDDK--AKGASHQGIIARVKPAKQLNEHDLDTILEGSENP-LLLILDGVTDPHNLGACL 114 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A +I K + +A +K A GA E +P +R++NL ++ + G +G Sbjct: 115 RNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVG 174 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + +A+++GAEG+G+R T+ET + + M G + +LNVS A + Sbjct: 175 TAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGI 234 Query: 272 ALY 274 L+ Sbjct: 235 CLF 237 >gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter xylosoxidans C54] Length = 245 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 111 HQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + A + LD + LL++LD V DPHN+GA LR+A A +I Sbjct: 69 HQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAVIAP 128 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + ++ + + A GA + +PY+ ++NL ++ + G +G + + + Sbjct: 129 RDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHRIDA 188 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 189 RQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYET 239 >gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 248 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+ VP +D++ + HQG+ A +LD + + ++LD + DPH Sbjct: 50 VQKVPRSKLDQM--ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILRSA A G+I KR S +A +AK+A+GA+EHIP +R++N+++ + ++ Sbjct: 108 NLGSILRSADATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKER 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +G +++ + Q + I +++G EGKG+ ++ L M G + +LN Sbjct: 168 NVWIVGTEAEADQDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNA 227 Query: 266 SNAAAVALY 274 S A + LY Sbjct: 228 SVACGLLLY 236 >gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 244 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 13/192 (6%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVN 142 PV+ VP + ++++ K HQG+ +P+ +S T V + L +VLDH++ Sbjct: 50 PVQYVPVEKLNRLTKKN--HQGVVATLSPVDYHNFEDLVISVTESGV--TPLFLVLDHLS 105 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N GAI+R+A GII KR S S +A K+++GA+ +P ++ NL DA+ + Sbjct: 106 DVRNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYL 165 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + + + + + L E A+++GAE G+ P + S A L M G I + Sbjct: 166 QGSGIRVVAATEKTSQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISS 225 Query: 263 LNVSNAAAVALY 274 LNVS A AV LY Sbjct: 226 LNVSVACAVFLY 237 >gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 245 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107 +YG+H V++ L ++ ++ K RL H V+ + QT+D Sbjct: 5 IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L L+ + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL L+ + S +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237 >gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] Length = 322 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] Length = 232 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 KEA +G+ E +P+ +D +R ++ LD V DP N+GAI+RSA F C G Sbjct: 54 KEA--RGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAG 111 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR + +AK ++GA+ H+ R+ NL + L+K+ +G +G D +PL Sbjct: 112 VVIPKRRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDG-EPLR 170 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++G E KGL ++ +A + G I +LN+S A A+ +Y Sbjct: 171 NVDLSPPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMY 223 >gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 316 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 10/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V Q +D++ G +HQG+ L+ P L+ T +A +++ LD++ DP N+ Sbjct: 123 VSRQELDRMTGN-GMHQGIGLQIPPYKYTEVEDLIESTANAA-TPGMIVALDNITDPRNL 180 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++RS AF G++ +R S S +AV ++++G +P + +N+ L++ G+ Sbjct: 181 GAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRTLKQFQQAGY 240 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 Q +GL + L+ + +++G+EGKGL ET ++ + M +++LN S Sbjct: 241 QVVGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRLVSETCDTIMSVPMAKWVESLNASV 300 Query: 268 AAAVAL 273 AA V L Sbjct: 301 AAGVVL 306 >gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 210] Length = 324 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 316 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 316 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa SC2] gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa SC2] Length = 248 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-------TVPPQ 99 E ++ G H+V+ AL + R I ++ NA L LP K V + Sbjct: 2 EEEWIAGKHSVTEALRS-GRTINKIWIADNAQKHL----TLPITAEAKKAGIIVLQVDKR 56 Query: 100 TIDKIV-GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +D++V G + HQG+ + AP L + A L++LD + DPHN+G+IL Sbjct: 57 KLDQMVPGIQ--HQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSIL 114 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A GII KR S + + ++K+++GA+E++P R+SNL + ++ G +G Sbjct: 115 RTADCTGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVG 174 Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + P+ + +A+++G E KG+ +E + L M G I +LN S AA Sbjct: 175 TDVTATDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAG 234 Query: 271 VALY 274 V +Y Sbjct: 235 VVMY 238 >gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] Length = 253 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 62 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 120 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 179 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 180 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 231 >gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 243 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 DK +AVHQG+ + L LD + + L++LD V DPHN+GA LR+A Sbjct: 59 DK-QADDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I + S +A + K A GA E +P I ++NL ++ + +G + Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] Length = 402 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIMRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] Length = 547 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 19/255 (7%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLP 88 ++ R ++P + ++G H AAL R I ++ T +L DA Sbjct: 165 EASGSSERFGAEPADDLVWGRHPAQAALEG-DRPIHRIWCTPELRFAPRFLQLLRDAKA- 222 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLD 139 + V+ V + +I G AVHQG+ L+ A + TLD + + LLM +D Sbjct: 223 NGVLVEEVTWARLGQISGG-AVHQGIVLQAA--AAETLDLASLIDGCSTIGEAPLLMAVD 279 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAI+RSA A G++ +R + + +AK A+GALEH+P R+ NL ++ Sbjct: 280 GLTDPHNLGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSI 339 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +++ G++ +GL+ + L + + + ++ G+E +GL T++ + + + G Sbjct: 340 EQLKDAGYRVVGLAEEGNVSLMEADLDGPLVVVTGSEAQGLSMLTRKHCDQLIRIPLRGA 399 Query: 260 IKALNVSNAAAVALY 274 +LN S A A+ LY Sbjct: 400 TPSLNASVATALLLY 414 >gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 235 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 82/140 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD + DP N GA++RSA F GII +R + + + K+++GA+E++ ++++ Sbjct: 89 IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+++AL K+ + G + K +E + AL+LG+EG G+R K +E + Sbjct: 149 NISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGIRKKVKENCDVLIK 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A + L Sbjct: 209 IPMHGKINSLNVSVAGGIIL 228 >gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU045] Length = 255 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 56 VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPH 113 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 114 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + + +++G+EG+G+ + + M G + +LN Sbjct: 174 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 233 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 234 SVAASLMMY 242 >gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis RP62A] Length = 249 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 108 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + + +++G+EG+G+ + + M G + +LN Sbjct: 168 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 243 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVANRQWL 58 Query: 102 DKIVGKEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 DK +AVHQG+ + P L L+ + L++LD V DPHN+GA L Sbjct: 59 DK-QADDAVHQGIVAKVKEGRKYQENDLPALLDNLE----TPFLLILDGVTDPHNLGACL 113 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A +I + S +A + K A GA E +P I ++NL ++ + +G Sbjct: 114 RNADGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVG 173 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V Sbjct: 174 TAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGV 233 Query: 272 ALY 274 L+ Sbjct: 234 CLF 236 >gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 222 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 29 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGS 86 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 87 IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 146 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 147 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 206 Query: 270 AVALY 274 ++ +Y Sbjct: 207 SLLMY 211 >gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus weihenstephanensis KBAB4] Length = 247 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K N I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HIMB114] gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HIMB114] Length = 233 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 ++ G H+V +A+ N +I Q+L L ++ +LP F VK + I+KI+ Sbjct: 4 FWIAGKHSVISAVLNKHNEIHQIL-----LQNIEHKIDLPKEFHRIVKKIEKDEINKILD 58 Query: 107 K--EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG + S + + + L++LD + D NIGAI+R+A AF+ II Sbjct: 59 NYPDISHQGFFAQIERNYSNNKEELFKEKNLIMLDGLTDQRNIGAIIRTASAFNIKQIII 118 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K+ + + +L K+ASG ++ I + SN+ + +++ + G +SK ++ + Sbjct: 119 NKKDIVTSNLLLNKTASGGMDLINIFQTSNIINLFKELKKKDYWFYGFDGNSKTIFKKNL 178 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++K I G+EGKGLR ++ + +++ + +LNVS + A AL + Sbjct: 179 LSEKNVFIFGSEGKGLREIIKKNCDHLVRININNKVDSLNVSASVASALTV 229 >gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L++ D + L++ LD V DP N+GA++RS AF G+ Sbjct: 139 HQGLVLQVPPYEYAHPEDLVTAAFDD-HDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGV 197 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A K+++G P R +NLT L++ G +GL++D + + E Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHE 257 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + +++G+EGKGL ET + + MPG ++LN AA V LY Sbjct: 258 LEELGGPVVIVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLY 310 >gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 249 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 78/136 (57%) Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN+GA LR A +I K ++ +A +AK ASGA E +PY ++NL Sbjct: 106 DGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLART 165 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L ++ IG S D+ + L Q AL+LGAEG+G+R T++T ++ + M G Sbjct: 166 LGELKERNIWCIGTSDDAPQTLYQSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKG 225 Query: 259 IIKALNVSNAAAVALY 274 +++LNVS A+ V LY Sbjct: 226 GVESLNVSVASGVCLY 241 >gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] Length = 285 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++NL + L++ W F T +D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 SWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 317 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 10/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V Q +D++ G +HQG+ L+ P L+ D+ L++ LD++ DP N+ Sbjct: 122 VSRQELDRMTGN-GLHQGIGLQIPPYKYADVHDLIERAADSA-TPGLVVALDNITDPRNL 179 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++RS AF G++ +R S S +AV ++++G +P + +N+ AL++ G+ Sbjct: 180 GAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVAKATNMVRALKQFQQNGY 239 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 Q +GL + + L+ +++G+EGKGL ETA ++ + M +++LN S Sbjct: 240 QVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLSRLVGETADTILSIPMADKVESLNASV 299 Query: 268 AAAVAL 273 AA V L Sbjct: 300 AAGVVL 305 >gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] Length = 296 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 9/173 (5%) Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ L P LL+ ++ R + L + LDH++DP N+GA++RSA AF Sbjct: 114 APHQGIGLRVRPYEYHHPEDLLTEAENSGRPA-LFVALDHISDPRNLGAVVRSAAAFGGH 172 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ R S S +A+ ++++GA +P + NL +L++ G +GL ++ L Sbjct: 173 GVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQERGLLLVGLDAEGDTSL 232 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +AL++G+EGKGL +E+ + + M G +++LNVS A V L Sbjct: 233 DDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLNVSVATGVVL 285 >gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 22/240 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101 +YG+H V A L ++ ++ K +A L+ ++ Q + Sbjct: 4 IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELE-----AQGIVIQVASRQWL 58 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 DK ++AVHQG+ + L LD + L++LD V DPHN+GA LR+A Sbjct: 59 DK-QAEDAVHQGIVAKVKEGRKYQENDLPAMLDNL-EMPFLLILDGVTDPHNLGACLRNA 116 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I + S +A + K A GA E IP I ++NL ++ + +G + Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAG 176 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236 >gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] Length = 248 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L + I +L +N A R + V + + Sbjct: 6 LIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLHAM-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A ++G EG+G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240 >gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] Length = 243 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 +K V + +D + + HQG+ P+ +LD + + L ++LD + DPH Sbjct: 46 LKRVAKEKLDNLADSYS-HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPH 104 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G+ILR+A A G+I KR S ++ + K+++GA+EHIP +++NL A++++ Sbjct: 105 NFGSILRTADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKEN 164 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 F G +++ Q+ + +++G+EG G+R +E + L M G I +LN Sbjct: 165 RFWIAGADMEAEGFCYQQDLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNA 224 Query: 266 SNAAAVALY 274 + A AV +Y Sbjct: 225 AVAGAVLMY 233 >gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 12/197 (6%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVR----------NSQLLMV 137 + PVK V + +D + HQG+ E P ++ D V+ N+ L++V Sbjct: 46 YNVPVKRVSRKELDA-KSERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIV 104 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LDH+ D N+GAI RSA G+I + S +A KS++GA+ H+P +++NLT Sbjct: 105 LDHITDAGNLGAIARSAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTG 164 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL ++ GF G S ++ + + KIAL++G E +G+ T E+ + L Sbjct: 165 ALDRLKKAGFWVAGASEHAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQA 224 Query: 258 GIIKALNVSNAAAVALY 274 G++ +LNV+ A+ +Y Sbjct: 225 GMVGSLNVAQASTAVMY 241 >gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 255 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 6 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175 >gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 33/277 (11%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLF------------LYGVHTVSAALNNPS--RKIFQ 70 + HR +K+ S P++ F +YG HTV AAL N +I+ Sbjct: 15 QRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLAALENERSLNRIWM 74 Query: 71 L--LATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--- 121 + L + N L+ + L + V Q +D+I HQG+ + +P Sbjct: 75 VPQLQSDNRFQKGLSTAKANGTL-----IDRVSNQRLDQI-APGTNHQGIVAQVSPYAYK 128 Query: 122 -LSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 LS +D A + ++++ + + DPHN+GAI+R++ A G+I +R + ++ + Sbjct: 129 ELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVGITSTVM 188 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K A+GALE P R+ NL AL+++ GF G S+ + +PL + + L++G+EG Sbjct: 189 KVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGPVVLVVGSEG 248 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GL +++ + + + G +LNVS A +ALY Sbjct: 249 QGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALY 285 >gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU144] gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU028] Length = 255 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 56 VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPH 113 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 114 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +++ + + +++G+EG+G+ + + M G + +LN Sbjct: 174 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 233 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 234 SVAASLMMY 242 >gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus GG] gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 260 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H V AAL + K+F K+ + V T P Q +D ++ Sbjct: 17 FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 196 YRQWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMY 250 >gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 85/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A +N ++++LD + DP N GAI+RSA F D I+ +R S + + K+++GA+E++ Sbjct: 83 ASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E +KI L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMFGQINSLNVSVASGILL 228 >gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8801] gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] Length = 292 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 19/241 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104 N +YG H+V AAL + R++ ++ T +L +DA ID++ Sbjct: 44 NDLIYGRHSVLAALES-DRQLNRIWITN----KLHYDARFHTLIQAAKAKGSVIDEVSIQ 98 Query: 105 ----VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRS 153 + HQG+A + AP L+ A N ++++ D + DP N+GAI+R+ Sbjct: 99 RLNQLTHGGNHQGVAAQVAPYAYHELETLIEQAKASSNEPVIVIADGIADPQNLGAIIRT 158 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ +R + ++ + K A+GALE P R+ NL+ AL+ + GF G + Sbjct: 159 AEALGTQGLVIPQRRAAGVTSTVIKVAAGALESFPVARVVNLSRALETLKEAGFWIYGTA 218 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K L I L++G+E GL T+ + + + G +LN S AAA+ L Sbjct: 219 ATGGKSLHNMELRGPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLNASVAAAIVL 278 Query: 274 Y 274 Y Sbjct: 279 Y 279 >gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 249 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 12/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVG 106 + YGVH+V + L ++ L K RL L PF V+ +++K+ G Sbjct: 6 YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG 65 Query: 107 KEAVHQGL--ALETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A+ P+L+ LD + + LL+ LD V DPHN+GA +R+A A Sbjct: 66 L-PFHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAAMGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG-LSSDSKK 218 +I + + S + K A+G E + +I+++NL L + + + IG + +S Sbjct: 125 AVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESAL 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PL++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 185 PLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240 >gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] Length = 288 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIG 148 VP +D++V HQG+ + + T+D A +N ++LD V DPHN+G Sbjct: 96 VPKSKLDQLVDG-MNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLG 154 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I+R+A A GII KR + +A +AK+++GA+EH+ R++NL A++++ G Sbjct: 155 SIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVAVARVTNLVQAIKELKERGLW 214 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + + E I L++G EGKG+ +E M + M G +++LN S A Sbjct: 215 LYGTDMEGQDYRQWET-TLPIGLVMGNEGKGISRLVKEQMDGMITIPMTGHVQSLNASVA 273 Query: 269 AAVALY 274 A++ +Y Sbjct: 274 ASLLMY 279 >gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3] Length = 247 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 30/242 (12%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ------------ 99 +G+H V A L N ++ ++ + R D P+ + Q Sbjct: 8 FGLHAVEAVLQNSPERVIEIWVLQG---RDD-----KRLIPILEIASQWGVSVQYASRKA 59 Query: 100 TIDKIVGKEAVHQGLA--LETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 DK G + HQG+ ++ A +L+ LD + L++LD V DPHN+GA LR Sbjct: 60 LDDKSAGGQ--HQGVVAKVKAAKILNDNDLHAMLDGTE-TPFLLILDGVTDPHNLGACLR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K S + V++K A GA E +P +++NL ++ + G G Sbjct: 117 NADAAGVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGA 176 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + Q +A+ +GAEGKGLR T+E+ S+ + M G + +LNVS A + Sbjct: 177 AGEADSDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGIC 236 Query: 273 LY 274 L+ Sbjct: 237 LF 238 >gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] Length = 365 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 25/261 (9%) Query: 34 QSFNQK---SRHTSQPENL---FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 QSF++ SR S E+ +YG H V AA+ R + +L A+L +D++ Sbjct: 76 QSFSRDHLDSRFESIDEDTSPDLIYGRHAVEAAIE-AGRSLNRLWVN----AKLHYDSHF 130 Query: 88 PHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRNSQ--- 133 +D++ + + A HQG+ + + L + +N Sbjct: 131 RPLIATAKANGSVVDEVENVRLSQMTQGASHQGIVAQVSAYEYVDLEVLVQQAKNKARRP 190 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ D + DPHN+GAI+RSA A GI+ +R + ++ +AK ++GALE+IP R+ Sbjct: 191 VIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQRRAVGVTSTVAKVSAGALENIPIARVI 250 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL+ + S F GL++++ + + + + L++GAEG GL Q + Sbjct: 251 NLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSAPVVLVVGAEGSGLSLSVQNLCDQLVS 310 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G +LN S A +ALY Sbjct: 311 IELSGKTPSLNASVATGMALY 331 >gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 380 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 >gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL S4-171] Length = 190 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 104/184 (56%), Gaps = 15/184 (8%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRS 153 I+K+V VHQG+A + A LD + N+ ++LD + DPHN+G+I+R+ Sbjct: 1 IEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMRT 58 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQTI 210 A + GII KR + + +AK+++GA+E++P +R++N+ + LQK W F T Sbjct: 59 ADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTD 118 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + ++ ++ +A+++G+EG G+ +E + HL M G + +LN S AA+ Sbjct: 119 AKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAAS 175 Query: 271 VALY 274 + LY Sbjct: 176 LLLY 179 >gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 249 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 V+TVP +D + A HQG+A AP D Q +++LD + DPH Sbjct: 50 VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ Sbjct: 108 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDS 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G + + + + +++G+EG+G+ + + M G + +LN Sbjct: 168 GFWIAGTEASNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 227 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 228 SVAASLMMY 236 >gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium spinosum DSM 4136] Length = 193 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 77/141 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + DPHN+GA LR+A A CD ++ K + S + + A G E++P R++ Sbjct: 39 LVLVLDCIQDPHNLGACLRTADAAGCDLVVMPKDKTAPISDTVIRVACGGAENVPIARVT 98 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A+ K+ G +G + K+ + I +++GAEG+G+R T E + Sbjct: 99 NLARAMDKLKDLGVWFVGTEDEGKQSIYDVDLKGPIGIVMGAEGEGMRRLTGERCDFLVK 158 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + LNVS A V L+ Sbjct: 159 IPMTGQVPCLNVSVATGVCLF 179 >gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium praevalens DSM 2228] Length = 246 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 P+ + Q +++ A HQG+ E L S L+ V L+++LD + D Sbjct: 46 IPISRISSQKLNESAQSHA-HQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKD 104 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN GAI+R+A A D ++ +R + + V+ K+A+GA EH+P +++SN+ A++ + Sbjct: 105 PHNFGAIIRTAYAAGADAVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLK 164 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F G + + + + I L++G+EG GLR +E + + M G + +L Sbjct: 165 EANFWIAGADAAADQTHFEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSL 224 Query: 264 NVSNAAAVALY 274 N S AA+V +Y Sbjct: 225 NASVAASVIIY 235 >gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240013] Length = 250 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K ASGA E +PYI ++NL L+++ +G IG + Sbjct: 123 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 312 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 9/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVND 143 PV VP + +D + G +HQG+ L+ P + + VR+ + + +VLD++ D Sbjct: 113 IPVHEVPRRDLDNMTGN-TLHQGIGLKIQPYKYADVFDLIGGVRDRGETGMFVVLDNITD 171 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RSA AF G+I +R S + V ++++G +P R +NLT +++ Sbjct: 172 PRNLGAVIRSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVARATNLTRTIKEFK 231 Query: 204 SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ +GL + + L+ + D + +++G+EGKG+ +E + + +++ Sbjct: 232 DNGYMVVGLDAGGEHTLDTFDGATDPVVIVVGSEGKGISRLVRENCDVIMSIPTADWVES 291 Query: 263 LNVSNAAAVAL 273 LN S AA V L Sbjct: 292 LNASVAAGVVL 302 >gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] Length = 246 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E L ++ + N L ++LD + DPHN GAI+R+A A D ++ Sbjct: 65 HQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGADAVV 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R + + V+ K+A+GA EHIP +++SN+ A++ + F +G + ++ + Sbjct: 125 YQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSHFEA 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G+EG GLR +E + + M G + +LN S AAAV +Y Sbjct: 185 DFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIY 235 >gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta thermophila DSM 6578] Length = 241 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + Q + + VG H+G ALE L + + LL+ LDH+ DPHN+G Sbjct: 51 EVCSAQELSRYVGT---HRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVG 107 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F G+I +R + ++A ++KS+SGA +P + +NL AL + GF Sbjct: 108 AILRSADQFGALGVIIPERRAVKDAASISKSSSGADAFVPVVVETNLRRALLHVKKAGFW 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + +P+ + + ++ L+LGAEGKGL +E + + G + + NVS A Sbjct: 168 VYGADMEG-QPVHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVA 226 Query: 269 AAVALY 274 A + +Y Sbjct: 227 AGILMY 232 >gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus profundus DSM 14977] gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus profundus DSM 14977] Length = 237 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 13/234 (5%) Query: 49 LFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +++YG + V AA R++ + + DA +P+ + VP +D++V + Sbjct: 1 MWIYGRNPVLEAAREGGVRRVLVARGVERKFLKKLEDAGIPY----ELVPRIELDQLV-R 55 Query: 108 EAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ E + DA +R + L+++LD + DP N GAILRSA A Sbjct: 56 TTHHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAH 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+++ R S S V K+++GA H+P +++ NL ++++ G GL+ + + L Sbjct: 116 GVVSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVAL 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ +A ++G+EG GLR ++ + H+ + G +LN + AA +A++ Sbjct: 176 EEADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVH 229 >gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] Length = 270 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 19/241 (7%) Query: 50 FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDK 103 ++YG+H V L +I FQ + RL NL +K V + ID+ Sbjct: 22 WVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRL---LNLCRENGIKANVVARREIDQ 78 Query: 104 IVG---KEAVHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + VHQG+A + L ++ + L+++LD + DPHN+GA LRS Sbjct: 79 LFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNLGACLRS 138 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A ++ K S +A ++K A GA E +P ++NL ++K+ G G + Sbjct: 139 ADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGVWIFGTA 198 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + ++ A+++GAEG G+R T+E + L M G++ +LNVS A + L Sbjct: 199 GEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGICL 258 Query: 274 Y 274 Y Sbjct: 259 Y 259 >gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3] gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans Sphe3] Length = 329 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 15/191 (7%) Query: 107 KEAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRS 153 ++AVHQGL L+ P L T+ V N+ L + LD + DP N+GAI+RS Sbjct: 139 EDAVHQGLVLQIPPYDYQDAYELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRS 198 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AFS G+I +R S +A K+++GA +P R SNL +AL++ + G +GL Sbjct: 199 VSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLD 258 Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D L + + + + +++G+EGKGL +E + + + +++LN S A ++ Sbjct: 259 GDGDVSLPDLTLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGIS 318 Query: 273 LY-ITQNHFAK 282 LY I++ AK Sbjct: 319 LYEISRQRAAK 329 >gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 245 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 18/240 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100 N ++G+H V A L ++ ++ K+ R D D +P ++ + Sbjct: 3 NDMIFGIHAVKAVLATDPVRLIEVFVLKD---RQD-DRLMPLLTELKDLGITIQQAGRKA 58 Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154 +D K A HQG+ P L LDA+ LL++LD V DPHN+GA LR+A Sbjct: 59 LDD-KAKGASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNA 117 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K + +A +K A GA E +P +R++NL ++ + G +G + Sbjct: 118 DAAGAAAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAG 177 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 178 EATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237 >gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 246 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ + HQG+ + A +D + + ++LD + DPH Sbjct: 49 VQYVPKKKMDQL--SDGNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPH 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N+G+I+R+A A GII KR S S +A +AK+++GA+E++P R++NL D L++ Sbjct: 107 NLGSIMRTADAVGAHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKER 166 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W F T + + L+ I +AL++G+EGKG+ ++ + L M G + + Sbjct: 167 GVWIFGTDAKGTQDYRQLDGVI---PLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTS 223 Query: 263 LNVSNAAAVALY 274 LN S AA++ +Y Sbjct: 224 LNASVAASLLMY 235 >gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus Lc 705] Length = 260 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H V AAL + K+F K+ + V T P Q +D ++ Sbjct: 17 FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 196 YRQWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMY 250 >gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102] gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102] Length = 249 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 84/146 (57%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G ++ +E +K+ L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAVGEANINYNEEDYPNKVVLVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLVKIPMYGQINSLNVSVASGILL 228 >gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314] gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 132/278 (47%), Gaps = 25/278 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 +H KL R R +K RH + L + G + V L+ PS ++ Sbjct: 48 AHKRKLERQRR---------EKGRHQREQTELVV-GRNPVLECLHARVPSTALYVAEGAA 97 Query: 76 NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DA 128 N RL L PV V +D++ G +HQG+ L P + DA Sbjct: 98 ND-ERLSESVRLAADRSIPVLEVNKLELDRMTGN-GMHQGIGLAIPPFEYADIHDLLADA 155 Query: 129 VRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 ++ + + ++LD++ DP N+GA++RS AF +G+I +R S S +AV ++++G Sbjct: 156 AQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAAR 215 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P + +N+T +++ G+Q +GL + L+ D + +++G+EGKG+ +E Sbjct: 216 VPVAKETNMTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRE 275 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 ++ + +++LN S AA V L + Q A+ Sbjct: 276 NCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313 >gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] Length = 246 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ E HQG+ + A +D + + ++LD + DPH Sbjct: 49 VQYVPKRKLDQMA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPH 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G+I KR S + +AK+++GA+EH+P R++NL + ++ Sbjct: 107 NLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKER 166 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + ++ +AL++G+EGKG+ E + L M G + +LN Sbjct: 167 GVWVAGTDASAQDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNA 226 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 227 SVAASLLMY 235 >gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 311 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P L+ + L++ LD V DP N+GA++RS AF G++ Sbjct: 133 HQGLVLQVPPYEYAHPEDLAAAAADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 192 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222 +R + +A K+++GA P R +NLT AL+ G +GL++D + L + Sbjct: 193 VPERRAAGMTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDL 252 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +A+++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EALGGPVAIVVGSEGKGLSRLVGETCDYRVRIPMPGGTESLNAGVAAGIVLY 304 >gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] Length = 371 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P D + + + LL+ LD V DP N+GA++RSA Sbjct: 182 LDRMTGG-VLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGAVIRSA 240 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT +L+ GF +GL + Sbjct: 241 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVVVGLDA 300 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L + E + +++G+EG+GL ET + M +++LN S AAAV L Sbjct: 301 DGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTL 360 >gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 253 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A T+D + + + ++LD + DPHN+G+ILR+A A GII Sbjct: 75 HQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLGSILRTADAAGVHGII 134 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A +AK ++GA+E++P R++NL + + ++ G G + + Sbjct: 135 IPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVWIFGTDMAGEDYRRWD 194 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K AL++G EGKG+ P ++ M + M G +++LN S AA++ +Y Sbjct: 195 AKG-ATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVAASLLIY 244 >gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 245 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+ VP + +D++ E HQG+ + A +D + + ++LD + DPH Sbjct: 48 VQYVPKRKLDQMA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPH 105 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G+I KR S + +AK+++GA+EH+P R++NL + ++ Sbjct: 106 NLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKER 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + ++ +AL++G+EGKG+ E + L M G + +LN Sbjct: 166 GVWVAGTDASAQDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNA 225 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 226 SVAASLLMY 234 >gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] Length = 250 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ ++++LDH+ DP N+G+ILR+A F G+I K S + V+ K+++GA+ H+P Sbjct: 93 IKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVVKASTGAVFHLP 152 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +L + ++K G + + + E + IALI+G+EGKG+ E A Sbjct: 153 IAKVGSLRNVIEKFKKKGGWVVAIEKGGRNIAEIDFPYP-IALIVGSEGKGVSKSILEEA 211 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +A + M G I +LNVSNA ++AL+ Sbjct: 212 DIIATIPMVGKITSLNVSNATSIALW 237 >gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491] gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491] Length = 250 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens TC1] gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter aurescens TC1] Length = 330 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 14/182 (7%) Query: 107 KEAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRS 153 ++AVHQGL L+ P L TL + N+ + + LD + DP N+GAI+RS Sbjct: 140 EDAVHQGLVLQIPPYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRS 199 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AFS G+I +R S +A K+++GA +P R +NL +AL++ + G +GL Sbjct: 200 VSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLD 259 Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D L + + + + +++G+EGKGL +E + + + +++LN S A ++ Sbjct: 260 GDGDVSLPDLTVATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGIS 319 Query: 273 LY 274 LY Sbjct: 320 LY 321 >gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 50 FLYGVHTVSAAL-NNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H ++A L NP I LA +A A+ D + V + +D + G Sbjct: 6 LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65 Query: 107 KEAVHQGL-ALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ A+ A + L L+ + LL++LD V DPHN+GA LR A A Sbjct: 66 N-ARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +A ++GAEG+G+R T+E + + M G +++LNVS ++ + L Sbjct: 185 HFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVL 236 >gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032] gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris AB-18-032] Length = 373 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P P D V +++ LL+ LD V DP N+GA++RSA Sbjct: 184 LDRMTGG-VLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLGAVIRSA 242 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT +L+ GF +GL + Sbjct: 243 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMVVGLDA 302 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L + E + +++G+EG+GL +T + M +++LN S AAAV L Sbjct: 303 DGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASVAAAVTL 362 >gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] Length = 247 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNI 147 V+ VP Q ++++ G + QG+ +P+ D ++ +L+VLDH+ DP N+ Sbjct: 53 VQKVPRQKVEELAGTKKT-QGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNV 111 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+I+R+A GII K S + V+ K+++GA+ ++P ++ +L + L+K G Sbjct: 112 GSIMRTAEILGVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSLRNTLEKFKKKGG 171 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + K E + +AL++G+EGKG+ E A +A + M G I + NVSN Sbjct: 172 WVVAVEKGGKNIHEIDFPFP-LALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSN 230 Query: 268 AAAVALY 274 A A+AL+ Sbjct: 231 ATAIALW 237 >gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 315 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD ++DPHN GAILR+A A G+I KR + ++ +AK+++GA+E++P R++ Sbjct: 167 FIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAGAVEYVPVSRVT 226 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ ++ + +G S +K + IAL++G+EG+G+ +E + + Sbjct: 227 NISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPIALVVGSEGEGMGKLVREKCDFVVN 286 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AAA+ +Y Sbjct: 287 IPMQGEISSLNASVAAAIVMY 307 >gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 315 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 18/182 (9%) Query: 109 AVHQGLALETAPLLSPTLDAV---------------RNSQLLMVLDHVNDPHNIGAILRS 153 A+HQG+AL+ P DAV + L + LD + DP N+GAI+RS Sbjct: 125 AIHQGMALQIPPY--EYKDAVQLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRS 182 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF DG+I +R S +A K+++GA +P + +NLT AL+++ + G IGL Sbjct: 183 ASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLD 242 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + L E+ + +++G+EGKGL +E ++ + + +++LN S A ++ Sbjct: 243 AGGDMDLPNFELATGPLCIVVGSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGIS 302 Query: 273 LY 274 LY Sbjct: 303 LY 304 >gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 248 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPH 145 + VP +D++ + HQG+AL A T+D A ++ + ++LD + DPH Sbjct: 53 ISNVPKTKLDQMSDHQN-HQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII +R + ++V+AK+++GA+EH+P R++NL Q++ Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAQELKDR 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G K +AL++G EGKG+ ++ M + M G +++LN Sbjct: 172 GVWLFGTDMKGTDYRRWNAKG-AVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNA 230 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 231 SVAASLLIY 239 >gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 20/243 (8%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPP 98 + EN+ +YG + V A+N R+I ++ +K+A + D N+ V T Sbjct: 3 ENENI-IYGRNPVLEAIN-SGREIEKIYVSKSAKGNISKIIKSARDKNII----VSTADN 56 Query: 99 QTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAIL 151 T+DK+ G HQG+ AL + D + + +++LD + D HN GAI+ Sbjct: 57 VTLDKMSGN-GNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAII 115 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AFS GI+ KR S ++ + K+++GA E++ ++SN+ +A+ + G +G Sbjct: 116 RTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVG 175 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S D+K+ + IA+++G+EG+G+ ++ + + M G + +LN S AA++ Sbjct: 176 SSVDAKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASI 235 Query: 272 ALY 274 +Y Sbjct: 236 FMY 238 >gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5] gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5] Length = 371 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P D + + + LL+ LD V DP N+GA++RSA Sbjct: 182 LDRMTGG-VLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGAVIRSA 240 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT +L+ GF +GL + Sbjct: 241 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVVVGLDA 300 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L + E + +++G+EG+GL ET + M +++LN S AAAV L Sbjct: 301 DGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTL 360 >gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] Length = 234 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 47 ISKGARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG + Sbjct: 107 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESD 166 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D+ A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 167 LYHCNLPDRAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224 >gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis OX99.30304] gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M6190] gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M13399] gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M0579] gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis ES14902] gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis 961-5945] gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis G2136] gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M04-240196] gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis NZ-05/33] Length = 250 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K ASGA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 244 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 9/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVND 143 PV+ +++DK+V + HQG +AL + D ++ +Q +++LD + D Sbjct: 45 IPVQEADKRSLDKLV--QGNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELED 102 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A A G++ +R + + + K+++GA+E++ R++NL ++ + Sbjct: 103 PHNLGAIIRTADAVGIHGVVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLK 162 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +G + + + L Q +AL++G+EGKG+ +E + L M G I +L Sbjct: 163 EKGCWVVGADAAAPQNLWQADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSL 222 Query: 264 NVSNAAAVALY 274 N S AAAV Y Sbjct: 223 NASVAAAVLCY 233 >gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 325 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 14/190 (7%) Query: 98 PQTIDKIVGKEAVHQGLALETAPL-LSPTLD----AVRNSQ-------LLMVLDHVNDPH 145 P +D+I HQG+A E A + +D AV ++ LL+VLD V DPH Sbjct: 130 PADLDRITAG-GTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPLLIVLDQVTDPH 188 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA LRSA AF DG+I + S S +A + K ++GA +P + NLT ALQ++ + Sbjct: 189 NLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTHALQQLQAE 248 Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G IGL L + ++ + + ++ G+EGKG+ +ET + + + +++LN Sbjct: 249 GAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVSIPIDKRMESLN 308 Query: 265 VSNAAAVALY 274 + A +ALY Sbjct: 309 AAVATGIALY 318 >gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] Length = 329 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 15/190 (7%) Query: 108 EAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154 +AVHQGL L+ P L T++ + N+ L + LD + DP N+GAI+RS Sbjct: 140 DAVHQGLVLQIPPYDYADAYELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSV 199 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AFS G+I +R S +A K+++GA +P R SNL AL++ + G +GL Sbjct: 200 SAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDG 259 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D L + + + + +++G+EGKGL +E + + + +++LN S A + L Sbjct: 260 DGDVSLPDLSLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITL 319 Query: 274 Y-ITQNHFAK 282 Y +++ AK Sbjct: 320 YEVSRQRAAK 329 >gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] Length = 298 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 10/170 (5%) Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P LL+ LD + LL+ LD+++DP N+GAI+RS AF G Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D + +++G+EGKGL ++ + + M ++LN S AA V Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVFIPMAAQAESLNASVAAGV 298 >gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] Length = 254 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 33/241 (13%) Query: 63 NPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKE------------- 108 N S IF +NA L L+ D + + +K +I+KI+GK Sbjct: 9 NMSDYIF----GRNAVLEALESDRKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKH 64 Query: 109 --------AVHQGLALETAPLLSPTLDAV------RNSQL-LMVLDHVNDPHNIGAILRS 153 VHQG+ + T++ + +N L L++LD + DPHN GAI+R+ Sbjct: 65 KLENMAEGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRT 124 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A GII +KR ++++ KS++GA+ HI +++N+ D + K+ G Sbjct: 125 CEAVGVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGAC 184 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++K IA+++G EGKG+ ++ + L M G + +LN SNA A+ + Sbjct: 185 GEAEKIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILV 244 Query: 274 Y 274 Y Sbjct: 245 Y 245 >gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] Length = 285 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%) Query: 50 FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 F++G H TV A K+F Q A + +L A PVK VP +D + Sbjct: 46 FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ L TL+ + + ++LD + DPHN G+ILR+A A D Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217 GII K + + + K+++GA+EHIP R++ L + L++ W F T +D + Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSGTDYR 223 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q IALI+G EG+G+ + + + M G +++LN AA + +Y Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276 >gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 234 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 85/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E +K+ L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWIYGAAGEANINYNEEDYPNKVILVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228 >gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis H44/76] Length = 250 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555] gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] Length = 280 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 22/254 (8%) Query: 41 RHTSQPENL---------FLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87 RH ++ ENL + G ++V ALN+ + I Q+ ++ + A Sbjct: 17 RHKNKIENLKSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKE 76 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDH 140 H VK V + +D+I + VHQG+ + P L+ + + S +++LD Sbjct: 77 KH-IVVKKVDKRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDE 134 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN GAI+R+A GII KR + + + KS++GA+E++ +++NL ++ Sbjct: 135 IQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIE 194 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 K+ G + N IALI+G+EGKG+ T++ + + M G I Sbjct: 195 KLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNI 254 Query: 261 KALNVSNAAAVALY 274 +LN S AA + +Y Sbjct: 255 SSLNASVAAGMLMY 268 >gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] Length = 362 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 25/258 (9%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------- 87 ++ + + S E +YG H+V AAL R + ++ T +L +D Sbjct: 92 VDETAANLSDEETELIYGRHSVQAALEK-ERTLNRIWIT----PQLRYDPRFHSLVNQAK 146 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDH 140 + V V + +D+I + A+HQG+A + + LS + +++ +L+V + Sbjct: 147 ANGSIVDEVDFRRLDQITDR-AIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAEG 205 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +NDPHN+GAI+R+A A G++ +R + +A + K A+GALE+ P R+ NL+ AL+ Sbjct: 206 LNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRALE 265 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLHM 256 ++ + GF G ++ K + K+A L++G+EG GL Q + + + Sbjct: 266 ELKAAGFWIYGTAAKEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIPL 325 Query: 257 PGIIKALNVSNAAAVALY 274 G +LNVS A +ALY Sbjct: 326 RGNTPSLNVSVATGMALY 343 >gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402] Length = 258 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++S +++LD V DPHN G+I+RSA F DGII + S +++K ++GAL + Sbjct: 105 AEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWV 164 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ ++NL ++++ GF G + K L K LI+G+EG+G+ +ET Sbjct: 165 PFVEVTNLVRTVERLKKEGFWIYGADA-VGKALPDLTFPKKTVLIMGSEGRGMSRLVEET 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G + +LNVS AA + LY Sbjct: 224 CDEIVSIPTKGKLDSLNVSVAAGILLY 250 >gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] Length = 256 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 9/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVND 143 PVK V + +D + HQG+A + A T++ A R LL++ D + D Sbjct: 59 VPVKRVDVRRLDTLA-NGLNHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIED 117 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A A G+I KR +A++ ++++GA+EH+P R++NL ++++ Sbjct: 118 PHNLGAIIRTAEAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELK 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G G + + + ++ AL++G+EG GL +ET ++ L M G + +L Sbjct: 178 ARGVWIYGADASGARWDQTDLTGPS-ALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSL 236 Query: 264 NVSNAAAVALY 274 N S AA + +Y Sbjct: 237 NASVAAGILMY 247 >gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Neisseria meningitidis H44/76] gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis CU385] Length = 261 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251 >gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 247 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 307 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 10/195 (5%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--------RNSQLLMVLDH 140 H + VP Q +DK+ AVHQG+AL+ P +D V N LL+ D Sbjct: 107 HSLSLLQVPRQELDKLT-DGAVHQGVALQLPPYEYADIDEVATKALGRDDNHGLLVACDG 165 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN+GAI+RSA AF DG+I +R S S +A K+++GA + +++NL L+ Sbjct: 166 ITDPHNLGAIIRSAAAFGADGVIIPERRSASLTASAWKASAGAAARLRVAKVTNLNRGLE 225 Query: 201 KMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ GF GL+ ++ + N + L++G+EG GL +E + + + Sbjct: 226 RLAKAGFVIAGLAGEADTDIAGIPGVNGPLVLVVGSEGAGLSRMVREHCDVLVSIPITSE 285 Query: 260 IKALNVSNAAAVALY 274 +++LN S A A+ALY Sbjct: 286 VESLNASVATAIALY 300 >gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] Length = 327 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 9/174 (5%) Query: 110 VHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+A + P + LDA S L++ LD V DP N+GAILRSA AF G+ Sbjct: 147 VHQGVAAQVPPYEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGV 206 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R S +A K ++GA H+P R +NL AL ++ G +GL D + + E Sbjct: 207 LVPERRSAGVTASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGE 266 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274 + D + +++G+EGKG+ +ET +A + + +++LN A ++ALY Sbjct: 267 LSLATDPLVVVVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALY 320 >gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 234 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 84/146 (57%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ Sbjct: 83 AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E +K+ +LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKVVFVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228 >gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] Length = 290 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 25/278 (8%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIF 69 ++S+ K R N+R KK + N+ + S + E++ + G + V AL + + Sbjct: 11 RESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIII-GRNAVLEAL--KTERTI 67 Query: 70 QLLATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121 + L N+ +L+ N +K V + +D + AVHQG+ P Sbjct: 68 ETLYISNS--KLEGSINAIISKAKDKKILIKEVDKRKLDSMCNN-AVHQGVIARVTPYEY 124 Query: 122 --LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +S L+ + +++LD V DPHN+G+I+R+A F GII KR S S + ++ Sbjct: 125 SEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMV 184 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 KS+ GA+EH+ R++NL + ++ G G +++ Q A+I+G E Sbjct: 185 YKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAIIIGNE 244 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GKG+ T + + + M G I +LN S A + +Y Sbjct: 245 GKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMY 282 >gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 237 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 14/181 (7%) Query: 111 HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +P+ + A+ + L+ LD + DPHN+GAI RSA AF GI+ Sbjct: 62 HQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGIVLP 121 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K S + + + K+++GA+ +IP+ +S+ AL+K G IGL S K I Sbjct: 122 KDRSATITNTVVKASTGAVFYIPFSIVSSFRLALKKFKEAGGWLIGLESGGK-----SIS 176 Query: 226 NDK----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N + L+ G+EGKGL T + + M G + +LNVSNA A+ LY+ + Sbjct: 177 NYSFPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQS 236 Query: 282 K 282 K Sbjct: 237 K 237 >gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240149] Length = 234 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 47 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K ASGA E +PYI ++NL L+++ +G IG Sbjct: 107 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 166 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 167 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224 >gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 249 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP NIGA++RSA A D +I +R S AV+AK ++GALEH P + ++ Sbjct: 96 FLLLLDELQDPQNIGALIRSANAAGVDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVT 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + GF +G D K + L++GAEGKG+ +E + Sbjct: 156 NLVRTMKDLKKRGFWIVGADMDGKDLYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVR 215 Query: 254 LHMPGIIKALNVSNAAAVALY-ITQNHF 280 + M G +++LN S A + LY IT+ Sbjct: 216 IPMLGQVQSLNASVAGGILLYEITRQRI 243 >gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 85/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ ++++LD + DP N GAI+RSA F D I+ +R S + + K+++GA+E++ Sbjct: 83 ASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E +KI L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLVKIPMFGQINSLNVSVASGILL 228 >gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] Length = 249 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 260 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H V AAL + K+F K+ + V T P Q +D ++ Sbjct: 17 FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K A+++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 196 YRQWDAKG-STAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMY 250 >gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] Length = 198 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 5 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 62 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 63 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 122 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 123 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 182 Query: 270 AVALY 274 ++ +Y Sbjct: 183 SLLMY 187 >gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG E PL A++ L++LD V D NIGAI+RSA AF DG+I + + Sbjct: 61 HQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGMKTC 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + A+L S++ A E +P + + D L ++ GF G D +++ K A Sbjct: 121 NLEAILRTSSAAAFE-LPIALVPSTKDMLNELKQIGFTLYGADMDGVD-VQKVTFAPKRA 178 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LI+G+EGKGL PK +E ++ + M +LNVS AAA+ Sbjct: 179 LIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAI 219 >gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 255 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 68 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG + Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245 >gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 198 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 5 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 62 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 63 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 122 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 123 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 182 Query: 270 AVALY 274 ++ +Y Sbjct: 183 SLLMY 187 >gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola ATCC 35405] Length = 258 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 6/184 (3%) Query: 94 KTVPPQTIDK---IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 KT+P Q D ++ EA +Q + + A + S +++LD V DPHN G+I Sbjct: 70 KTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKL--AEKGSAFVVILDSVTDPHNTGSI 127 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA F DGII + S +++K ++GAL +P++ ++NL ++++ GF Sbjct: 128 IRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEGFWIY 187 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + K L K LI+G EG+G+ +ET + + G + +LNVS AA Sbjct: 188 GADAGG-KALPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAG 246 Query: 271 VALY 274 + LY Sbjct: 247 ILLY 250 >gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces hygroscopicus ATCC 53653] gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces himastatinicus ATCC 53653] Length = 317 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L+ P L + D + L++ LD V DP N+GA++RS AF G+ Sbjct: 139 HQGMVLQVPPYDYAHPEDLSAAAFDDGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 197 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + +A K+++G P R +NLT AL+ G +GL++D + L+ Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGETELQD 257 Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + +++G+EGKGL ET + MPG ++LN AA V LY Sbjct: 258 LEALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLY 310 >gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 250 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG + Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 325 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 14/190 (7%) Query: 98 PQTIDKIVGKEAVHQGLALETAPL-LSPTLD----AVRNSQ-------LLMVLDHVNDPH 145 P +D+I HQG+A E A + +D AV ++ LL+VLD V DPH Sbjct: 130 PADLDRITAG-GTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPLLIVLDQVTDPH 188 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA LRSA AF DG+I + S S +A + K ++GA +P + NLT ALQ++ + Sbjct: 189 NLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTHALQQLQAE 248 Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G IGL L + + + + ++ G+EGKG+ +ET + + + +++LN Sbjct: 249 GAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVSIPIDKRMESLN 308 Query: 265 VSNAAAVALY 274 + A +ALY Sbjct: 309 AAVATGIALY 318 >gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 328 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVR--------NSQLLMV 137 P+ +P +D++ +VHQG+A++ P P LD + L + Sbjct: 122 IPMLEIPRSELDRLT-DGSVHQGVAMQIPPYKYPDATDLVLDTMERWHSGKLSTPPLFVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAI+RS AFS DG+I +R S + +A K+++GA IP +NLT Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 +Q+ G IGL L E+ N+ + +++G+EGKGL E + + + Sbjct: 241 VIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGKGLSRLVTENCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALY 274 +++LN + A + LY Sbjct: 301 DSAMESLNAAMAVGITLY 318 >gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 212 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 19 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 77 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 137 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196 Query: 270 AVALY 274 ++ +Y Sbjct: 197 SLLMY 201 >gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] Length = 247 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum reducens MI-1] Length = 243 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 83/141 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD +NDPHN+GAI+R+A A G+I +R S + ++ +AK+++GA+E++P R++ Sbjct: 96 FIIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVT 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G +G D + + L++G EGKGL +E + Sbjct: 156 NLDQTIRQLKDEGLWVVGADMDGSEIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVR 215 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G + +LN S AAA+ +Y Sbjct: 216 LPMAGRVGSLNASVAAALLVY 236 >gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 248 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V + L+ NPS +I+ L ++N+ ++ + ++ + ++ I Sbjct: 4 LVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLN-IKS 62 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ++HQG+ E ++ + L++LD + DPHN+GA LRSA A Sbjct: 63 SGSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S S ++ + K +SG+ +H+ ++R++NL L+ + + +G S + Sbjct: 123 HMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSDRE 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++G+EG G+R T+E + + M G +LNVS A + L+ Sbjct: 183 IFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLF 237 >gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 317 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 8/177 (4%) Query: 111 HQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P LDA L++ LD V DP N+GA++RS AF G++ Sbjct: 139 HQGLVLQVPPYEYAHPEDLLDAAAEEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 198 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A K+++G P R +NLT AL+ G +GL +D ++ Sbjct: 199 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGLMVVGLDADGDTEVQNA 258 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E+ + + ++ G+EGKGL ET + + MPG ++LN A V LY H Sbjct: 259 EVLDGPVVIVAGSEGKGLSRLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRH 315 >gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 313 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 10/180 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L+S DA + L++ LD V DP N+GA++RS AF G+ Sbjct: 135 HQGLVLQVPPYEYAHPEDLVSAAHDAGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A K+++G P R +NLT AL+ G +GL++D + + + Sbjct: 194 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGD 253 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + +++G+EGKGL ET + MPG ++LN AA + LY T A Sbjct: 254 LKALDGPVVIVVGSEGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313 >gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] Length = 328 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVR--------NSQLLMV 137 P+ +P +D++ +VHQG+A++ P P LD + L + Sbjct: 122 IPMLEIPRSELDRLT-DGSVHQGVAMQIPPYKYPDATDLVLDTMERWHSGKLSTPPLFVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+GAI+RS AFS DG+I +R S + +A K+++GA IP +NLT Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 +Q+ G IGL L E+ N+ + +++G+EGKGL E + + + Sbjct: 241 VIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGKGLSRLVTENCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALY 274 +++LN + A + LY Sbjct: 301 DSAMESLNAAMAVGITLY 318 >gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM 1279] gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM 1279] Length = 238 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ-LLMVLDHVNDPHN 146 +TVP +D++V + HQGL E L L+A R + LL+VLD + DP N Sbjct: 43 QTVPRIQLDQMV-RTTQHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRN 101 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI+RSA A G++T +R S SA++ K+++G IP +++ N+ L+++ G Sbjct: 102 YGAIIRSAFALGAHGVVTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQG 161 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G S + K + + +AL++G+EG+G+R E +A + + ++LN + Sbjct: 162 IWVYGTSGKASKTIAELDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAA 221 Query: 267 NAAAVALY 274 A V LY Sbjct: 222 VALGVVLY 229 >gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB] gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica RCB] Length = 243 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 82/153 (53%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L LD + L+VLD + DP N+GA LR A A +I K + + V AK+A Sbjct: 84 LDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHAVIAPKDRAVGLTDVAAKTAC 143 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA E +PY+ ++NL L+++ IG + +++ L A +LGAEG+G+R Sbjct: 144 GAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLYAAEWPKATAWVLGAEGEGMR 203 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+E + + M G +++LNVS AA V L+ Sbjct: 204 RLTRENCDQLVKIPMHGTVESLNVSVAAGVCLF 236 >gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] Length = 247 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 16/239 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101 N ++G H+V A L + ++ A K R D D V+ + + + Sbjct: 3 NELIFGFHSVEAILAKEPERFLEIYALK---GRDDKRLTPIIDEARKFGISVQFMQRKAL 59 Query: 102 DKIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155 D K+ HQG+ ++ AP + LD + + L+VLD + DPHN+GA LRSA Sbjct: 60 DN-KSKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSAD 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A II K S + K A GA E +P I+++NL L+++ G +G + + Sbjct: 119 AAGVHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGE 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 179 TDTHVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLF 237 >gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] Length = 247 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 247 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 234 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 82/140 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N GAI+RSA F D II +R S + + K+++GA+E++ +++ Sbjct: 89 LVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNISKVT 148 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+D + K+ + G + ++ +E +K+ L+LG EG G+R K +E + Sbjct: 149 NLSDTINKLKKLDYWVYGAAGEASINYNEEDYANKVILVLGNEGSGIRKKVREHCDKLIK 208 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G I +LNVS A+ + L Sbjct: 209 IPMYGQINSLNVSVASGILL 228 >gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 250 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L] gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus Q1] gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CNEVA-9066] gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A1055] gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Western North America USA6153] gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Kruger B] gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Vollum] gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Australia 94] gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI] gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Ames] gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC 10987] gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. 'Ames Ancestor'] gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Sterne] gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family [Bacillus cereus E33L] gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus Q1] gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus biovar anthracis str. CI] gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 247 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 54 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231 Query: 270 AVALY 274 ++ +Y Sbjct: 232 SLLMY 236 >gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] Length = 265 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 36 FNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPH 89 Q++RH + P L G H ++ A+ R I ++L R D H Sbjct: 1 MKQENRHIEEHSVDPPAGILAGRHAITEAIK-AGRGINRILIADGMHGGVRELRDLARAH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVN 142 V V +D + A H G+ AP+ + + +VR LL++LD + Sbjct: 60 DITVDIVSRAKLDA-AAEGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIE 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ + Sbjct: 119 DPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRAL 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G ++ + L++G+EG+G+ T+E L M G I + Sbjct: 179 KEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINS 238 Query: 263 LNVSNAAAVALY 274 LN S A A+ +Y Sbjct: 239 LNASVAGAILMY 250 >gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 18/240 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKI 104 LYG+H V AL SRK + ++ A +L +L V+ + + +++ Sbjct: 3 VLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVR-LRFENREQL 61 Query: 105 --VGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + K HQG+ L L++ D + LL+ LD V DP N+GA+LRSA Sbjct: 62 TRMAKTHAHQGVVAVVRERSFLTIEDLMAAPADG--HPHLLLALDGVEDPQNLGALLRSA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 DG++ +R S SAV K+++GA EHI R+ NL AL+++ +GL Sbjct: 120 DGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDE 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++LG EG+GL ++T + + M G + +LNVS A AV LY Sbjct: 180 RGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLY 239 >gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] Length = 249 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a] gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a] Length = 348 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G A HQGLAL T P L++ LD V DP N+GA++RSA Sbjct: 161 LDRMCGT-APHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDPRNLGAVVRSA 219 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R + +A K+++GA +P R +NL L G +GL++ Sbjct: 220 AAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAEAGLFVVGLAA 279 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ +++ E+ D + L++G+EG+GL ++ + M G +++LN AA +AL Sbjct: 280 DADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVAAGIAL 339 >gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 250 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG + Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 248 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 23/244 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-------TVPPQ 99 E ++ G H+V+ AL + R I ++ NA L LP K V + Sbjct: 2 EEEWIAGKHSVTEALRS-GRTINKIWIADNAQKHL----TLPITAEAKKAGIIVLQVDKR 56 Query: 100 TIDKIV-GKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAIL 151 +D++V G + HQG+ + AP + L R+ L++LD + DPHN+G+IL Sbjct: 57 KLDQMVPGIQ--HQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSIL 114 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR S + + ++K+++GA+E++P R++NL + ++ G +G Sbjct: 115 RTADCTGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVG 174 Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + P+ + +A+++G E KG+ +E + L M G I +LN S AA Sbjct: 175 TDVTATDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAG 234 Query: 271 VALY 274 V +Y Sbjct: 235 VVMY 238 >gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] Length = 249 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] Length = 252 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVP--PQTIDKIVG 106 ++G H V+A L + + ++ T+ R +A ++ +P + +D + G Sbjct: 6 LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A + LD + L++LD + DPHN+GA LR A A Sbjct: 66 -HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +A ++K A GA E +PYI+++NL L+ + G G D + L Sbjct: 125 VLAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A ++G+EG+G+R T+E + + M G +++LNVS A + L T+ Sbjct: 185 HFEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETR 240 >gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] Length = 246 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 14/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145 ++ P +D++ G HQG+ E L T+D + R LL+VL D + DP Sbjct: 42 LRFAPRIELDQLAGTTQ-HQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPR 100 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202 N GAI+RSA G++ +R S S V+ K+A+GA ++P + NL DAL++ Sbjct: 101 NFGAIIRSAEVLGAHGVVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKED 160 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W + G + ++ + + + + K+AL++GAEG+GLR +E ++ + G +++ Sbjct: 161 GVWIY---GAAGEAAQDIGRTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQS 217 Query: 263 LNVSNAAAVALY 274 LN S AA + LY Sbjct: 218 LNASVAAGILLY 229 >gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 306 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 11/183 (6%) Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D+I A+HQG+AL+ P LLS D + LL+ LD + DP N+GAI+R Sbjct: 118 LDRIT-DGAIHQGVALQVPPYEYAHPDDLLSLARDRAEHP-LLVALDGITDPRNLGAIVR 175 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S AF G+I T+R + S +A K+++GA IP ++ NL A+ + G +GL Sbjct: 176 STAAFGGHGVIITERRAASMTAAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGL 235 Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + L + E+ + + L++G+EGKGL ++ + + + ++LN AA V Sbjct: 236 DMNGDVELPKLELAREPVCLVVGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGV 295 Query: 272 ALY 274 ALY Sbjct: 296 ALY 298 >gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 250 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 234 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 85/146 (58%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A ++ ++++LD + DP N GAI+RSA F D I+ +R S + + K+++GA+E++ Sbjct: 83 ASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++NL+D + K+ + G + ++ +E +KI L+LG EG G+R K +E Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G I +LNVS A+ + L Sbjct: 203 CDKLIKIPMFGQINSLNVSVASGILL 228 >gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] Length = 278 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 6/186 (3%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154 +D++ G AVHQG+AL +LD + + L+++LD DPHN+G+++R+A Sbjct: 88 ALDQMTGG-AVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTA 146 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A ++ K S + + K+++GA P I + N+ AL + GF +GL+ Sbjct: 147 EAAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAG 206 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +S +PL + + + L +GAEG GL T+++ +A + M G ++LN AAA+ Y Sbjct: 207 ESSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAY 266 Query: 275 ITQNHF 280 F Sbjct: 267 EWARRF 272 >gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 290 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 25/278 (8%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIF 69 ++S+ K R N+R KK + N+ + S + E++ + G + V AL + + Sbjct: 11 RESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIII-GRNAVLEAL--KTERTI 67 Query: 70 QLLATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121 + L N+ +L+ N +K V + +D + AVHQG+ P Sbjct: 68 ETLYISNS--KLEGSINAIISKAKDKKILIKEVDKRKLDSMCNN-AVHQGVIARVTPYEY 124 Query: 122 --LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +S L+ +++LD V DPHN+G+I+R+A F GII KR S S + ++ Sbjct: 125 SEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMV 184 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 KS+ GA+EH+ R++NL + ++ G G +++ Q A+I+G E Sbjct: 185 YKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAIIIGNE 244 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GKG+ T + + + M G I +LN S A + +Y Sbjct: 245 GKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMY 282 >gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24] gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24] Length = 328 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 15/190 (7%) Query: 108 EAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154 +A+HQGL L+ P L T+++ V N+ L + LD + DP N+GAI+RS Sbjct: 139 DAIHQGLVLQIPPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSV 198 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AFS G+I +R S +A K+++GA +P R +NL + L+ + G +GL Sbjct: 199 SAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDG 258 Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D L + + + + +++G+EGKGL +E + + + +++LN S A ++L Sbjct: 259 DGDVSLPDLSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISL 318 Query: 274 Y-ITQNHFAK 282 Y I++ AK Sbjct: 319 YEISRQRAAK 328 >gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 68 ISKGARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG + Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245 >gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] Length = 247 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 15/192 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145 V+ VP Q I+ +V HQG+ + A +D + R Q ++LD + DPH Sbjct: 50 VQFVPKQKIEGMVRDN--HQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPH 107 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A A GII KR + +A +AK+++GA+EHIP R++NL D L++ Sbjct: 108 NLGSIMRTADASGVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKER 167 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 W T +D + L+ + I L++G+EGKG+ ++ + + M G + + Sbjct: 168 GVWVAGTDAKGADDYRRLDGTL---PICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTS 224 Query: 263 LNVSNAAAVALY 274 LN S AA++ +Y Sbjct: 225 LNASVAASILMY 236 >gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia dioxanivorans CB1190] Length = 329 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP +D++ G A+HQG+AL P LL + + R + L+ LD V DP N+ Sbjct: 135 VPRNDLDRMAGG-ALHQGVALVVPPYEYAHPDELLEAAVGSGRPA-LIAALDGVMDPRNL 192 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++RS AF G++ +R + +AV ++++G +P R +NLT LQ+ + G Sbjct: 193 GAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYANTGL 252 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 GL++D ++ ++ D + L++G+EGKGL +ET + + +++LN S Sbjct: 253 MVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESLNAS 312 Query: 267 NAAAVAL 273 AA V L Sbjct: 313 VAAGVVL 319 >gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 317 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D + L++ LD V DP N+GA++RS AF G+ Sbjct: 139 HQGLVLQVPPYEYAHPEDLAAAAFDDGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 197 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A K+++G P R +NLT AL+ G +GL++D + + + Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGD 257 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + +++G+EGKGL ET + + MPG ++LN AA V LY Sbjct: 258 LEALGGPLVIVVGSEGKGLSRLVGETCDYLVRIPMPGGAESLNAGVAAGVVLY 310 >gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] Length = 321 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 10/182 (5%) Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+A P LL D+ R + L++ LD V DP N+GA++RS AF Sbjct: 140 ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPA-LVVALDGVTDPRNLGAVVRSVAAFG 198 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R + +A K+++GA P R +NL A+++ G +GL ++ Sbjct: 199 GHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKAGLFVVGLDAEGDV 258 Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q ++ + + L++GAEG GL +E + + M G ++LN AA +ALY Sbjct: 259 LLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGVAAGIALYEVA 318 Query: 278 NH 279 H Sbjct: 319 RH 320 >gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] Length = 244 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ E ++D + S LL++LD + DPHN+GAILR+ A DG+I Sbjct: 66 HQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGVII 125 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K S + +AK ++GA++H+ +++NLT L+ + F +G D+ + Q Sbjct: 126 GKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQID 185 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ ++T L M G + +LN S A AV LY N Sbjct: 186 YNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYN 239 >gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] Length = 250 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] Length = 261 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76 Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL ++++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251 >gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 252 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVND 143 PVK V + +DKI VHQG +A+ T D + N++ ++VLD + D Sbjct: 52 IPVKYVDRKKLDKI-SNGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIED 110 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+G+I+R+A GII KR + + + K+++GA++++ ++SN+ A+ K+ Sbjct: 111 PHNLGSIIRTAELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLK 170 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G G D + + +AL++G+EG+G+ T++ + + M G + +L Sbjct: 171 KEGIWVYGAEIDGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSL 230 Query: 264 NVSNAAAVALY 274 N S AA + +Y Sbjct: 231 NASVAAGIVMY 241 >gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] Length = 286 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 +K V + +D + AVHQG+ P +S L+ +++LD V DPH Sbjct: 91 IKEVDKRKLDSMCNN-AVHQGVIARVTPYEYSEVSDILELAEKKGENPFIVILDEVEDPH 149 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A F GII KR S S + ++ KS+ GA+EH+ R++NL + ++ Sbjct: 150 NLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEK 209 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G +++ Q A+I+G EGKG+ T + + + M G I +LN Sbjct: 210 GIWVYGTDIRAEEYSYQTDFGGACAIIIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNA 269 Query: 266 SNAAAVALY 274 S A + +Y Sbjct: 270 SVAGGIIMY 278 >gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] Length = 248 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ ++++LDH+ DP N+G+ILR+A F G+I K S + V+ K+++GA+ H+P Sbjct: 91 IKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVIKASTGAVFHLP 150 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +L + ++K G + + + E + IAL++G+EGKG+ E A Sbjct: 151 IAKVGSLRNVIEKFKKKGGWVVAVEKGGRNIAEIDFPYP-IALVVGSEGKGVSKSILEEA 209 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +A + M G I +LNVSNA ++AL+ Sbjct: 210 DIIATIPMVGKITSLNVSNATSIALW 235 >gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] Length = 212 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149 P + +D++V E HQG+ + A L+ + RN ++LD + DPHN+G+ Sbjct: 19 PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 77 IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + K I L++G+EGKG+ E + L M G + +LN S AA Sbjct: 137 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196 Query: 270 AVALY 274 ++ +Y Sbjct: 197 SLLMY 201 >gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 251 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 14/174 (8%) Query: 111 HQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L A +L+ V RN +++LD + DPHN+G+ILR+A A G+I Sbjct: 73 HQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILRTADAAGVHGVI 132 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPL 220 KR + ++ +AK+++GA+E +P ++++NL + L+++ W F T +D ++ Sbjct: 133 IPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGTDMAGTDYRR-- 190 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+G EGKG+ T+E M + M G I++LN S AA + +Y Sbjct: 191 --WDATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLLIY 242 >gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] Length = 253 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 21/239 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102 + G H V AAL++ S+KI+Q + A+ + D +P + K + +D Sbjct: 12 LVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYRSK----RDLD 66 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-----LMVLDHVNDPHNIGAILRSAV 155 ++ + A HQG LE A ++D + R +L ++LD + DPHN+G+ILR+A Sbjct: 67 QLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGSILRTAD 125 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII K + + +AK ++GA+E++P R++N+T ++ + G G + Sbjct: 126 ACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVWVFGTDME 185 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + IA+++G E KG+ P+ ++ + + M G +++LN S AAA+ +Y Sbjct: 186 GQDYWDMD-ASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAAALVMY 243 >gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] Length = 327 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%) Query: 110 VHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ALE P ++ + L++ LD V DPHN+GA +RSA AF DG+ Sbjct: 141 VHQGIALEIPPYEYVDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSASAFRADGV 200 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S +A + K ++GA +P R +NL AL+ + + G+ +GL ++ Sbjct: 201 LIPERRSAGVNATVWKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGGGDATVDT 260 Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + ++ G+EGKGL ++T +A + + +++LN + A +ALY Sbjct: 261 LDMADVPLVIVTGSEGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALY 313 >gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] Length = 250 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 19/280 (6%) Query: 18 SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 +H K++R R+ ++ + KS +P + + G + V+ A P ++F L Sbjct: 49 AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108 Query: 74 TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123 K+ R++ L PV V + +D + AVHQG+A+E + L++ Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +L + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + K ++GA Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242 +P R +NL AL++ G+ +GL PL + + + ++ GAEG GL Sbjct: 225 AARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +ET + + + +++LN + A +ALY + AK Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324 >gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella violacea DSS12] gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella violacea DSS12] Length = 251 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 21/240 (8%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIV 105 +G+H V A L + ++ +L L R D ++ + V+ + +D Sbjct: 8 FGIHAVEAVLKHSPERVIELWVL---LGRDDKRLMPILESAAEYGVSVQYAARKVLDDKS 64 Query: 106 GKEAVHQGLALETAPL-------LSPTLD--AVRNSQ--LLMVLDHVNDPHNIGAILRSA 154 G HQG+ + L+ LD V N++ L++LD V DPHN+GA LR+A Sbjct: 65 GG-GQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACLRNA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G+I + S + ++K A GA E +P +++NL ++ + G +G + Sbjct: 124 DAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAG 183 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ L + +A+ +GAE KGLR T+E S+ + M G + +LNVS A+ V L+ Sbjct: 184 EAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGVCLF 243 >gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] Length = 314 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 107/199 (53%), Gaps = 12/199 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVND 143 P++ VP +D + G +HQG+ L+ + +D+V + L++ LD++ D Sbjct: 113 IPIREVPRHELDTMTG-NTMHQGIGLQIPSYKYSSVEDLIDSVAKTGEPGLIVCLDNITD 171 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RS AF G++ +R S + + V ++++G +P R +N+ +L++ Sbjct: 172 PRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAARLPVARATNMVRSLKQFQ 231 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q +GL + L+ + +++G+EGKGL ++T ++ + M G +++L Sbjct: 232 KAGYQIVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVRDTCDTIMSIPMTGWVESL 291 Query: 264 NVSNAAAVALYITQNHFAK 282 N S AA V L + FA+ Sbjct: 292 NASVAAGVTL----SEFAR 306 >gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] Length = 325 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 134/272 (49%), Gaps = 19/272 (6%) Query: 18 SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 +H K++R R+ ++ + KS +P + + G + V+ A P ++F L Sbjct: 49 AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108 Query: 74 TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123 K+ R++ L PV V + +D + AVHQG+A+E + L++ Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +L + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + K ++GA Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242 +P R +NL AL++ G+ +GL PL + + + ++ GAEG GL Sbjct: 225 AARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +ET + + + +++LN + A +ALY Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALY 316 >gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 16/253 (6%) Query: 36 FNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLP 88 Q+ R+T + P L G H ++ A+ R I ++L + R D Sbjct: 1 MKQEKRYTEEAPIEPPVGILAGRHAITEAIK-AGRGINRILIADGLHGSGVRELRDLARA 59 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHV 141 H V V +D + A H G+ AP+ + + +VR LL++LD + Sbjct: 60 HDITVDIVSRAKLDA-AAQGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGI 118 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ Sbjct: 119 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRA 178 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G ++ + L++G+EG+G+ T+E L M G I Sbjct: 179 LKEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKIN 238 Query: 262 ALNVSNAAAVALY 274 +LN S A A+ +Y Sbjct: 239 SLNASVAGAILMY 251 >gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 250 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 226 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 109 AVHQGL-ALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 A HQG+ AL + S D + N +++LD + DPHN+GAI RSA AF GII K Sbjct: 51 ANHQGVVALVSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPK 110 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + V+ K+++GA++++ + +NL+++++K+ G+ G + ++ + ++K Sbjct: 111 HKSVYVNDVVYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGADMEGEEYFKSDLKG 170 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L++G EGKGL P ++ + + M G I +LN S AA++ + Sbjct: 171 -KIVLVVGNEGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILM 216 >gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 320 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%) Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQGLAL+ P LL L++ L++ LD V DPHN+GAI RSA AF+ Sbjct: 137 AAHQGLALQVRPYQYRAPEALLDTALES-DTPALIVALDGVTDPHNLGAIARSAAAFNAH 195 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R S + K+++G L +P + +NLT AL+ G +GL + P+ Sbjct: 196 GLLIPERRSAGVNLTAWKTSAGTLARLPVAQATNLTRALEGYKKEGVFVVGLDAGGDTPI 255 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+ + +++G+EGKGL +E +A + + G ++LN S AA V+LY Sbjct: 256 PDLELATGPLVIVIGSEGKGLSRLVREACDVVASIPI-GNAESLNASVAAGVSLY 309 >gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 241 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145 V+ P +D++ G HQG+ E + ++D + R L++VL D + DP Sbjct: 47 VRFSPRIELDQLAGTTQ-HQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPR 105 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA G++ +R S S V+AK+A+GA ++P + NL + ++ + Sbjct: 106 NFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAE 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + ++ + L + + K+AL++GAEG+G+R +E + + + G +++LN Sbjct: 166 GVWVYGAAGEAAQELGKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNA 225 Query: 266 SNAAAVALY 274 S AA + LY Sbjct: 226 SVAAGILLY 234 >gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeovibrioides DSM 265] Length = 249 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + T++ + RN+ LL+VL ++DPHNIGAI+R+A A + DG++ Sbjct: 73 HQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLV 132 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +AV+ K+++GAL H+ ++ +L +L+ +H+ G + I +++ Sbjct: 133 EGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETNYTDADF 192 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LGAEG GL P+ E + M G +++LNVS A V LY Sbjct: 193 RLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLY 241 >gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19] gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11] Length = 250 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] Length = 284 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 6/189 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145 P+ VP +D + HQG+ LET P T++ V + L++VLDHV D Sbjct: 82 VPIARVPRAKLDALS-SHGAHQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEG 140 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA G+I + + + K+++GA+ H+P R+ N+ AL+ + Sbjct: 141 NFGAIVRSAEVVGAAGVIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGA 200 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G + ++ + +IAL+ G+EG GL E+ L G ++LNV Sbjct: 201 GFWVGGATEHARDTVWDASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNV 260 Query: 266 SNAAAVALY 274 + AA V Y Sbjct: 261 AQAATVLCY 269 >gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] Length = 255 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+V D +NDPHN+GAILR+A G+I KR S + + K+++GALE++P R+S Sbjct: 104 FLIVADELNDPHNLGAILRTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVS 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL+ + G G + E E+ AL++G+EG G+ +E + Sbjct: 164 NLAAALEDLKKRGLWIYGADMEGTPWCEAELTGPA-ALVIGSEGAGIGRLVKEKCDVILS 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G I +LN S AA V +Y Sbjct: 223 LPMRGKINSLNASVAAGVLMY 243 >gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] Length = 267 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 75/142 (52%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + LD V DPHN+GA+LRSA DG+I +R S SA +AKS++GA EH+ ++ Sbjct: 98 RFFLALDGVEDPHNLGALLRSADGSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQV 157 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N+T AL+ M +GL L+LG+EG GL + T + Sbjct: 158 VNITRALETMKKHNVWIVGLDERGTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLL 217 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A AV +Y Sbjct: 218 RIPMAGSVSSLNVSVAGAVVMY 239 >gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 255 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 68 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 188 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245 >gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1] Length = 255 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 68 ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245 >gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 318 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 10/191 (5%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153 +D++ G +HQG+ L+ P + D ++ + L++ LD++ DP N+GA++RS Sbjct: 129 LDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGAVIRS 187 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF G+I +R S S +AV ++++G +P + +N+ +L+++ G+Q +GL Sbjct: 188 VAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQLQQAGYQVVGLD 247 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ +++G+EGKGL ET ++ + M +++LN S AA V L Sbjct: 248 AGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVL 307 Query: 274 --YITQNHFAK 282 + Q AK Sbjct: 308 SEFARQRRAAK 318 >gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205] gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola CNS-205] Length = 372 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P P D + + LL+ LD V DP N+GA++RSA Sbjct: 183 LDRMTGG-VLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLGAVIRSA 241 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT AL+ GF +GL + Sbjct: 242 AAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVVVGLDA 301 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L E + +++G+EG+GL ET + M +++LN S AAAV L Sbjct: 302 DGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASVAAAVTL 361 >gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02] gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18] gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140] gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1] gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] Length = 250 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240355] Length = 234 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 47 ISKGARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 107 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 166 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 167 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224 >gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] Length = 261 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 21/240 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV- 105 LYG + V A L + R+ ++ T++ D P++ + + +++++ Sbjct: 12 LLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKGLERMLP 71 Query: 106 GKEAVHQGLALETAPL-----------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 GK VHQG+A TA + + P + V L++VLDH+ DPHN GAI+RSA Sbjct: 72 GK--VHQGVAARTAGVELLELREVLARIPPAPEPV----LVVVLDHLEDPHNAGAIVRSA 125 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A + R + + K+++GA +P RI N+ L+ + G +GL + Sbjct: 126 EAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLEA 185 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + + ++AL++G+EGKGL T + + H+ M G +LN S AAA+ LY Sbjct: 186 QGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGLY 245 >gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] Length = 248 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L NP +++ L + + + PV V +D + Sbjct: 6 LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLC- 64 Query: 107 KEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A HQG+A L LD + LL++LD + DPHN+GA LR A A Sbjct: 65 RHARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G + L Sbjct: 125 VIAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A ++G EG+G+R T+E ++ + M G +++LNVS + + L T+ A Sbjct: 185 HYDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244 >gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1] Length = 266 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%) Query: 46 PENLFL--YGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQT 100 P++ F+ YG V AL++P ++ +++ + + A R A PV+ Q Sbjct: 21 PKDRFITVYGRKPVLEALSDPDLEVDKIVLADSVRGAGEREITAAARGRGVPVQRASAQR 80 Query: 101 IDKIVGKEAVHQG-LALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + G QG LA AP ++P L + R + +L VLD V +P N+G ILRS Sbjct: 81 VKVLAGNGRHDQGVLADVVAPRMAPLPVFLSDLGSRRPASVL-VLDAVTNPSNVGMILRS 139 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A DG++ +R P+ ++ K+++G P +R + + M GF GL Sbjct: 140 ATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLD 199 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + S L+ E+ + ++AL+LG E GL +E + L M G +++LNV++A AVA Sbjct: 200 TGSGSLLDAELPH-RVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAA 258 Query: 274 Y 274 Y Sbjct: 259 Y 259 >gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 249 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22] gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22] Length = 313 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D + L++ LD V DP N+GA++RS AF G+ Sbjct: 135 HQGLVLQVPPYEYAHPEDLANAAYDEGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A K+++G P R +NLT AL+ G +GL++D + + E Sbjct: 194 LVPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGE 253 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + +++G+EGKGL ET + MPG ++LN AA V LY Sbjct: 254 LEALGGPVVIVVGSEGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGVVLY 306 >gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus selenitireducens MLS10] Length = 255 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V+TVP + +D++ A HQG+ + A +D + +VLD + DPH Sbjct: 53 VQTVPRKRLDQMADGIA-HQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A G+I KR S ++ +AK+++GA+ H+P R++NL + ++ Sbjct: 112 NLGSILRTADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQ 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +G + E + +AL++G+EGKG+ +E + + + G + +LN Sbjct: 172 GLWFVGTDAKGDVSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNA 231 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 232 SVAASLLMY 240 >gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191] gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191] Length = 249 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 17/248 (6%) Query: 47 ENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTI 101 +NL ++GVH V+ + N R++ QL N + + + + + +T+ Sbjct: 3 DNLDIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTM 62 Query: 102 DKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155 D + K+ HQG+A P+ L +D R ++ L + +D + DP N+G+I+RSA Sbjct: 63 DALT-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 II R + + + K ASGA E + + ++NL AL + GF G Sbjct: 122 CLGFSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANLATALLDLKDEGFWIYGADMG 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274 + ++ + + L++G+EG G+R KT E + + PG + +LN +NAA++ ++ Sbjct: 182 GQSIVKTDYSFPAV-LVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMF 240 Query: 275 ITQNHFAK 282 + FAK Sbjct: 241 ---DMFAK 245 >gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD ++DPHN GAILR+A A G+I KR + ++ ++K+++GA+E++P R++ Sbjct: 171 FIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVSKASAGAVEYVPVSRVT 230 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ ++ + +G S +K + +AL++G+EG+G+ +E + + Sbjct: 231 NISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPMALVVGSEGEGMGKLVREKCDFVVN 290 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AAA+ +Y Sbjct: 291 IPMKGEISSLNASVAAAIVMY 311 >gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] Length = 312 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + DA ++ L+++LD V DP N+GA++RS AF G+ Sbjct: 134 HQGLVLQVPPYEYAHAEDLTAAAYDAGQDP-LIVLLDGVTDPRNLGAVVRSVSAFGGHGV 192 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A KS++GA P R +NLT L+ G +GL++D + + + Sbjct: 193 VVPERRAAGMTAGAWKSSAGAAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEADVTD 252 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A+++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 LPALEGPVAIVVGSEGKGLSRLVGETCDIRVRIPMPGGAESLNAGVAAGIVLY 305 >gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] Length = 314 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D + L++ LD V DP N+GAI+RS AF G+ Sbjct: 134 HQGLVLQVPPYEYAHPEDLPAAAYDEG-DDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 192 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A KS++G P R++NLT AL+ G +GL++D + + E Sbjct: 193 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGE 252 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL ET + MPG ++LN AA + +Y + A Sbjct: 253 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 312 Query: 282 K 282 + Sbjct: 313 R 313 >gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG] gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF] Length = 314 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D + L++ LD V DP N+GAI+RS AF G+ Sbjct: 134 HQGLVLQVPPYEYAHPEDLPAAAYDE-GDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 192 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A KS++G P R++NLT AL+ G +GL++D + + E Sbjct: 193 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 252 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL ET + MPG ++LN AA + +Y + A Sbjct: 253 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 312 Query: 282 K 282 + Sbjct: 313 R 313 >gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] Length = 314 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L++ D ++ L++ LD V DP N+GA++RS AF G+ Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAGAHDEGQDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + +A K+++GA P R +NLT AL+ G +GL++D + L Sbjct: 195 VVPERRAAGMTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGS 254 Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDHRVRIPMPGGTESLNAGVAAGIVLY 307 >gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] Length = 307 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D + L++ LD V DP N+GAI+RS AF G+ Sbjct: 127 HQGLVLQVPPYEYAHPEDLPAAAYDE-GDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 185 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A KS++G P R++NLT AL+ G +GL++D + + E Sbjct: 186 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 245 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL ET + MPG ++LN AA + +Y + A Sbjct: 246 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 305 Query: 282 K 282 + Sbjct: 306 R 306 >gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] Length = 361 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQGLAL P +L+ T A L++ LD V DP N+GA++RSA AF + Sbjct: 176 APHQGLALSVPPFEYAHPDDVLAATQSAA--PGLVVALDGVTDPRNLGAVVRSAAAFGAN 233 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R + +A K+++GA +P R NLT L+ G +GL++D + + Sbjct: 234 GVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLAADGEVDI 293 Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ D + L++G+EG+GL E + M G +++LN A +AL Sbjct: 294 DDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIAL 347 >gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 272 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 7/198 (3%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141 H V TV +D +V ++ HQG AP+ ++ + LL++LD + Sbjct: 68 HGITVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGI 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRA 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G ++ + + L++G+EG+G+ T++ L M G I Sbjct: 188 LKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKIN 247 Query: 262 ALNVSNAAAVALYITQNH 279 +LN S A A+ +Y Q Sbjct: 248 SLNASVAGAILMYEAQRQ 265 >gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum] Length = 334 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 25/233 (10%) Query: 32 KMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ ++ +++R P+ +YG + V AL R I++L A + L R D + Sbjct: 58 EINAYCKRNRSVMVPKVRGEIVYGTYPVLEALKANRRSIYKLFAKASVLGRAKQDDIIAK 117 Query: 90 PF---------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVL 138 +K + +D ++ + +H GL ++ +PL L + + N+++ + L Sbjct: 118 KILRLANDSGVDIKALNADQLD-VLTEYQLHNGLCIDASPLSYEVLCDEDIVNAKIFLYL 176 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIPYIRISNLTD 197 D V DP NIGAI+RS F DG+I + P +A ++K+++GALE P + + Sbjct: 177 DKVLDPGNIGAIIRSCFYFRIDGVILARDQGPKTLTAAMSKASAGALERFPVYTVEDFPS 236 Query: 198 ALQKMHSWGFQTIGLSSDSK---KPLEQEIK-------NDKIALILGAEGKGL 240 +++ + GF+ I S ++ K + I+ NDK+ +ILG EG+G+ Sbjct: 237 FRKRLRNVGFKFIATSDENSAITKGYQSPIRLPDFRPINDKVVIILGDEGRGI 289 >gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] Length = 250 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 63 ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240 >gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 318 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 10/191 (5%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153 +D++ G +HQG+ L+ P + D ++ + L++ LD++ DP N+GA++RS Sbjct: 129 LDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGAVIRS 187 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF G+I +R S S +AV ++++G +P + +N+ +L++ G+Q +GL Sbjct: 188 VAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQFQQAGYQVVGLD 247 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ +++G+EGKGL ET ++ + M +++LN S AA V L Sbjct: 248 AGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVL 307 Query: 274 --YITQNHFAK 282 + Q AK Sbjct: 308 SEFARQRRAAK 318 >gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] Length = 312 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 8/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQGL L+ P T D + R S LL+ LD V DP N+GAI+RSA AF G Sbjct: 127 AVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAIIRSAAAFGAHG 186 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R S +AV ++++GA +P +NLT L++ + G GL +D ++ Sbjct: 187 VLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIAGLDADGSTDID 246 Query: 222 -QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 I D + +++G+EG+GL +ET + M +++LN S A AV L Sbjct: 247 TMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGAVLL 299 >gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 335 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P L+ L++ LD V DP N+GA++RS AF G++ Sbjct: 157 HQGLVLQVPPYEYAHPEDLADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 216 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222 +R + +A K+++G P R +NLT AL++ G +GL++D + L + Sbjct: 217 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDL 276 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 277 DALEGPVVIVVGSEGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLY 328 >gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 278 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 12/248 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPV 93 Q+ R + + L G + V AL R I ++L + A PV Sbjct: 22 RQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAKEAALAPLLSLAREQGVPV 80 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 + + +D++ + HQG+ AP+ +LD V LL++LD + DPHN Sbjct: 81 RASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEEKGEPPLLLLLDEIEDPHN 139 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GA+LR+A A G++ +R + +A +AK+++GA+EH+ +RI N+ ++++ G Sbjct: 140 FGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQEMKRLKERG 199 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +G + + + +++G+EGKGL +ET + + M G I +LN S Sbjct: 200 LWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCDFLVRIPMHGAINSLNAS 259 Query: 267 NAAAVALY 274 A A+ +Y Sbjct: 260 VAGALLMY 267 >gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] Length = 254 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 26/252 (10%) Query: 50 FLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----I 104 +YG+HTV + +N +P+R + + + RL +L + + Q + I Sbjct: 4 LVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLK---SLIYRIRKMNINIQECTRRVLNI 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNS--QLLMVLDHVNDPHNIGAILRSA 154 ++ HQG+ E P+ P L+ +N+ LL+VLD + DPHN+GA +RSA Sbjct: 61 KSMKSAHQGIIAEVIPM--PALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A II + S + +A + K ASG+ + +P++R++NL+ L+ + + +G Sbjct: 119 DAAGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVL 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S + L D IAL++G+E G+R T+E + H+ +LNVS A + L+ Sbjct: 179 RSNQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLF 238 Query: 275 IT------QNHF 280 T QN F Sbjct: 239 ETVRQRKYQNGF 250 >gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%) Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ A + L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 7 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 66 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 67 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 126 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 127 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 184 >gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] Length = 323 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P LDA ++ L++ LD V DP N+GAI+RS AF G++ Sbjct: 140 HQGLVLQVPPYEYAHPEDLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A K+++G P R++NLT ALQ G +GL+++ ++ Sbjct: 200 IPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDL 259 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EGKGL E + + MPG ++LN AA V LY Sbjct: 260 DALGGPVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311 >gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] Length = 322 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 11/200 (5%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDH 140 H + V + +D++ + A+HQG+AL+ P L+ DA L++ LD Sbjct: 122 HGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLIGIAQDAA-EVPLIVALDS 179 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAI RSA AF G++ R S + K+++G L H+ R +NLT L+ Sbjct: 180 VTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGTLAHLTVARAANLTATLR 239 Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G IGL +S + + + + + +++G+EGKGL +E+ + + M Sbjct: 240 EYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSRLVRESCDLVVRIPMNAA 299 Query: 260 IKALNVSNAAAVALYITQNH 279 ++LN AA VALY H Sbjct: 300 AESLNAGVAAGVALYEVARH 319 >gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] Length = 316 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 7/172 (4%) Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ L A LL+ LD++ DP N+GA++RS AF G Sbjct: 135 GLHQGVALQVPEYTYAHPDDLLAAAKASGTPALLVALDNITDPRNLGAVIRSVAAFGGHG 194 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R S S +AV ++++GA +P + +NLT L+ G Q +GL +D L+ Sbjct: 195 VVIPARRSASVTAVAWRTSAGAAARLPVAQATNLTRTLKDWAESGAQLVGLDADGDVTLD 254 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++G+EGKGL +E+ S+ + M G +++LN S AA V L Sbjct: 255 DYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIPMAGDVESLNASVAAGVVL 306 >gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 313 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P LS V L++ LD V DP N+GA++RS AF G++ Sbjct: 135 HQGLVLQVPPYEYAHPEDLSAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVV 194 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222 +R + +A K+++G P R +NLT L+ G +GL++D + L + Sbjct: 195 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDL 254 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + +++G+EGKGL ET + MPG ++LN AA V LY Sbjct: 255 EALAGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLY 306 >gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] Length = 409 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDP 144 V V +D++ G A HQGLAL P LL+ +A LL+ LD V DP Sbjct: 206 VADVARGDLDRLCGS-APHQGLALSVPPFRYAHPDDLLARAQEA--PPGLLVALDGVTDP 262 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RSA AF G++ +R + +A K+++GA +P R +NL AL Sbjct: 263 RNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQ 322 Query: 205 WGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +GL++D + L++ E+ +D + L++G+EG+GL E + M G +++L Sbjct: 323 AGLFVVGLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESL 382 Query: 264 N 264 N Sbjct: 383 N 383 >gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] Length = 315 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 10/181 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L + D L++ LD V DP N+GAI+RS AF G+ Sbjct: 135 HQGLVLQVPPYEYAHPEDLPAAAYDEG-GEPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 193 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A KS++G P R++NLT AL+ G +GL++D + + E Sbjct: 194 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 253 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL ET + MPG ++LN AA + +Y + A Sbjct: 254 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 313 Query: 282 K 282 + Sbjct: 314 R 314 >gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp. PRwf-1] Length = 261 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 111 HQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ L PL + + L +VLD + D HN+GA LR+A A D +I Sbjct: 79 HQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRTAAAMGVDAVICP 138 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEI 224 K +S S + +AK + GA+E +P I ++NL ++ + G G + D + K L Sbjct: 139 KHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTALDATAKALPDVD 198 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 K+A+I+G+EG+G+R T E + ++ M G +++LNVS A + LY Sbjct: 199 LKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLY 252 >gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 287 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 12/248 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPV 93 Q+ R + + L G + V AL R I ++L + A PV Sbjct: 31 RQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAKEAALAPLLSLAREQGVPV 89 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 + + +D++ + HQG+ AP+ +LD V LL++LD + DPHN Sbjct: 90 RASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEEKGEPPLLLLLDEIEDPHN 148 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GA+LR+A A G++ +R + +A +AK+++GA+EH+ +RI N+ ++++ G Sbjct: 149 FGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQEMKRLKERG 208 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +G + + + +++G+EGKGL +ET + + M G I +LN S Sbjct: 209 LWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCDFLVRIPMHGAINSLNAS 268 Query: 267 NAAAVALY 274 A A+ +Y Sbjct: 269 VAGALLMY 276 >gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440] gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica CNB-440] Length = 373 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G +HQG+ L+ P P D + + LL+ LD V DP N+GA++RSA Sbjct: 184 LDRMTGG-VLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLGAVIRSA 242 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G+ +R + +A ++++GA +P +++NLT AL+ GF +GL + Sbjct: 243 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVVVGLDA 302 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L E + +++G+EG+GL +T + M +++LN S AAAV L Sbjct: 303 DGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVAAAVTL 362 >gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] Length = 326 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +VHQG+A+ + LDA + + LL+ LD V DP N+GAILR+ AF G Sbjct: 141 SVHQGVAMGVPAYEYLEVDDLLDAAASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHG 200 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R + +A K ++GA +P R++NL +L+ + G +GL D+ + Sbjct: 201 VIVPERRAAGMTASAWKVSAGAAARVPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVR 260 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + L++G+EGKGL +ET ++A + + +++LN + AA + LY Sbjct: 261 DLPFAADPLVLVVGSEGKGLSRLVRETCDAIAAIPISTTVESLNAAVAAGITLY 314 >gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] Length = 250 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 PV+ V + +D++ HQG+A + AP+ LD V LL++LD + D Sbjct: 47 IPVEKVSREVLDRLA-DGVRHQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQD 105 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++R+A A G++ +R S +AV+AK ++GA+E++P I+I N+ ++++ Sbjct: 106 PQNVGALIRTANAAGVHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLK 165 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF G D + + L++GAEGKGL +E + + M G + +L Sbjct: 166 KRGFWIAGADMDGEDQYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSL 225 Query: 264 NVSNAAAVALY 274 N S A + LY Sbjct: 226 NASVAGGILLY 236 >gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae R3021] gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 189 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 13/175 (7%) Query: 110 VHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG+ ++ A L+ LD + + + LL+VLD V DPHN+GA LR+A A +I Sbjct: 9 VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVI 68 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSKKP 219 K S +++ K A GA E +P IR++NL+ L+ + W +G + ++ + Sbjct: 69 VPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEATET 125 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 126 IYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 180 >gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] Length = 246 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQL--LATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVG 106 +YG+H V A L +I ++ L ++ D H V+ + +++D+ Sbjct: 6 IIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLDEKAQ 65 Query: 107 KEAVHQGLA--LETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ ++ A +L+ L+ + + L++LD V DPHN+GA LRSA A Sbjct: 66 CEQ-HQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADAAGV 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S S + V+ K A GA E + I+++NL ++ + G G + ++ Sbjct: 125 HAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEATGS 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + IA+ +GAE KGLR T+E ++ L M G + +LNVS A + L+ Sbjct: 185 VYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLF 239 >gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016] gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 256 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145 VK V + +D+I + VHQG+ + P L+ + + S +++LD + DPH Sbjct: 57 VKKVDKRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPH 115 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+R+A GII KR + + + KS++GA+E++ +++NL ++K+ Sbjct: 116 NFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKE 175 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + N IALI+G+EGKG+ T++ + + M G I +LN Sbjct: 176 NIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNA 235 Query: 266 SNAAAVALY 274 S AA + +Y Sbjct: 236 SVAAGMLMY 244 >gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] Length = 318 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153 +D++ G + HQG+AL T+D A N L++ LD V DP N+GAI+RS Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL+ Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244 Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + D + L++G+EG+GL T+++ + + + +++LN S AA++A Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304 Query: 273 LY 274 LY Sbjct: 305 LY 306 >gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA1] Length = 318 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153 +D++ G + HQG+AL T+D A N L++ LD V DP N+GAI+RS Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL+ Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244 Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + D + L++G+EG+GL T+++ + + + +++LN S AA++A Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304 Query: 273 LY 274 LY Sbjct: 305 LY 306 >gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] Length = 333 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 9/191 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPT--LDAVRNSQ---LLMVLDHVNDP 144 P+ V +D++ AVHQG+AL+ P L P LD +SQ L++ LD + DP Sbjct: 136 PLLEVGRAELDRLT-DGAVHQGVALQVPPYEYLDPDDLLDTAESSQTVPLVVALDGITDP 194 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA+LRSA AF G++ +R + +A K ++GA +P R +NLT ALQ Sbjct: 195 RNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARATNLTRALQDYRR 254 Query: 205 WGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +GL + PL + D + L++G+EGKGL +E ++ + + +++L Sbjct: 255 AGVFVVGLDAGGDVPLADLPFAADPLVLVVGSEGKGLSRLVREQCDAIVSIPIASAVESL 314 Query: 264 NVSNAAAVALY 274 N AA +ALY Sbjct: 315 NAGVAAGIALY 325 >gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] Length = 239 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 12/191 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPL-----LSPTLDAVRNSQLLMVLDHVND 143 P+K V I+K+V + QG+ L + P L +LD N +++VLDH+ D Sbjct: 48 IPIKYVERSFIEKMV--DGNSQGVLAILSSVPYKDWKELEKSLD---NKSIIVVLDHIQD 102 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P+N+GAI R++ I+ K S ++V K+++GAL +IP IR+SN+ + L+++ Sbjct: 103 PYNLGAIARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELK 162 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+ +G +++ + N +AL++G+EG+GL +E+ + + G +++L Sbjct: 163 GKGWFIVGADLNTENLYNKVEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESL 222 Query: 264 NVSNAAAVALY 274 NVS A + LY Sbjct: 223 NVSVAVGIILY 233 >gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA2] gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL001PA1] gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL044PA1] gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA2] gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA3] gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA3] gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA4] gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL060PA1] gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA2] gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL103PA1] gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp. P08] Length = 318 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153 +D++ G + HQG+AL T+D A N L++ LD V DP N+GAI+RS Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL+ Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244 Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + D + L++G+EG+GL T+++ + + + +++LN S AA++A Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304 Query: 273 LY 274 LY Sbjct: 305 LY 306 >gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis HAW-EB3] Length = 246 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 50 FLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 F +G+H V A L ++P R I + RL A L V QT + V E Sbjct: 6 FTFGIHAVEAVLKHSPERVIEMWVQAGRDDQRL---ATLLQMAAEYGVSVQTSARKVLDE 62 Query: 109 ----AVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ L LL+ L + ++LD V DPHN+GA LR+A A Sbjct: 63 KSDNGQHQGVLARVKAVKQLNDNDLLA--LVEKTETPFFLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +A+ +GAE KGLR T+E+ S+A + M G + +LNVS A+ + L+ Sbjct: 181 DSDLYKTDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLF 238 >gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter sp. 1501(2011)] Length = 262 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 111 HQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ L PL TL ++ L +VLD + D HN+GA LR+A A D +I Sbjct: 80 HQGVVLNARPLAMADEGEIATLAKAEDA-LFLVLDQITDAHNLGACLRTAAAMGVDAVIC 138 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 K +S S + +AK + GA+E +P I ++NL ++ + G G + D + K L Sbjct: 139 PKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGTALDETAKALPDV 198 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 K+A+I+G+EG+G+R T E + ++ M G +++LNVS A + LY Sbjct: 199 DLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLY 253 >gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 247 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 10/236 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K RL F V+ + + +D Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDN- 61 Query: 105 VGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ HQG+ ++ A + + LD + ++ L+VLD + DPHN+GA LRSA A Sbjct: 62 KAKDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLF 237 >gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 314 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 26/269 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 +H KL R RD RH + +L + G + V L+ P+ +F L T Sbjct: 47 AHKRKLERQRRD---------SGRHEKEKADLVV-GRNPVVECLHAKVPAEALFVALGTA 96 Query: 76 NALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125 + RL L + PV VP + +D + G +HQG+ L+ P L++ Sbjct: 97 HD-DRLSEAVTLANSKGLPVHEVPRRDLDTMTGN-GLHQGIGLKIQPYKYADVFDLMAGV 154 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D + + +VLD++ DP N+GA++RS AF G+I +R S + V ++++G Sbjct: 155 KDRGQTG-MFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAA 213 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244 +P + N+T +++ G+ +GL + + L+ + D + +++G+EGKG+ Sbjct: 214 RLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIVVGSEGKGISRLV 273 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E + + +++LN S AA V L Sbjct: 274 RENCDVLMSIPTESWVESLNASVAAGVVL 302 >gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 133/268 (49%), Gaps = 21/268 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82 RR+++ + + + R E+L ++G+H + AL +I +++A K+ A+ D Sbjct: 23 RRDNKSAGQDKKAATQDRRIRFSEDL-IWGIHPIVEALKYEPNRISEIIAQKDRRGAKFD 81 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAV---HQGLA--------LETAPLLSPTLDAVRN 131 L VK +I + G A HQG+ ++ A L DAV Sbjct: 82 EIVELARAAKVKVTFIDSI-SLQGDGAASARHQGVIAKVTQADLMDFADFLQKFKDAVDR 140 Query: 132 SQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++V D + DPHN+GAI+RSA+A G++ T+ S AKS++GA+ H+ Sbjct: 141 GEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHMDI 200 Query: 190 IRISNLTDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +++NL + L+K+ +W F I +D+ + ++ N +++G+EG G+RP + Sbjct: 201 CQVTNLVKSLAELKKVGAWVFGAIK-DADAVSLFDADL-NVPACIVVGSEGTGIRPLVRR 258 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AAAV L+ Sbjct: 259 ECDIQLSIPMVGELDSLNSSVAAAVILF 286 >gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] Length = 243 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 12/234 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ G + V AL + R I ++L + K LA + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALKS-GRSIQRILVSEDRVKTGLADI-VDLAKSQGIEVRPTPVKQMNKY- 60 Query: 106 GKEAVHQG-LALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCD 160 E HQG +AL +A + ++ + LL++ D V DPHN+GAI+R+A Sbjct: 61 DLEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGAT 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ KR++ +A +AK+++GA+E IP ++I N+T ++++ GF +G + + L Sbjct: 121 AVLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 181 YEADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMY 234 >gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1] gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str. Langford 1] Length = 244 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 8/149 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188 R L+++LDH+ DP N+GAILR+ AF DG+I K + +P V KS+ G +I Sbjct: 91 RERSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDKSAPLNHEVTLKSSQGYSLNIN 150 Query: 189 YIRISNLTDALQKMHS---WGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + +SNL +A+ K+ + W + T IG ++ S K +E DK ALI+G+EGKG+ Sbjct: 151 TVEVSNLNNAITKLKNRGYWVYSTEIGPNTKSFKEVEYA---DKCALIMGSEGKGVSKIL 207 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + H+ M + +LNVS AA + + Sbjct: 208 RDNSDVKVHIPMKNNVNSLNVSVAAGIII 236 >gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] Length = 363 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSA 154 +D++ G A HQGLAL P L R+S LL+ LD V DP N+GA++RSA Sbjct: 175 LDRMCGT-APHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAVVRSA 233 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R + +A K+++GA +P R +NL L + G +GL++ Sbjct: 234 AAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVVGLAA 293 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 DS+ +++ + D + L++G+EG+GL ++ + M G +++LN AA + L Sbjct: 294 DSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAGITL 353 >gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 267 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 8/193 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148 P V +++ G VH+G +LE PL P++D+V ++ ++VL+ + D NIG Sbjct: 78 PCYVVSAALAEEVTGFH-VHRGALASLERRPL--PSVDSVLSGARSVLVLEDIVDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RS A D ++ R + K A GA+ +P+ R+ + AL ++ + GF Sbjct: 135 AIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLPDWYGALPELSAAGFT 194 Query: 209 TIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 T+ L+ + P+E + DK+AL+LG+EG GL P+ ++ A A + M I +LNV+ Sbjct: 195 TVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAIIPMREGIDSLNVA 254 Query: 267 NAAAVALYITQNH 279 A AVA Y+T Sbjct: 255 AATAVACYVTARR 267 >gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 313 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P L+ L++ LD V DP N+GA++RS AF G++ Sbjct: 135 HQGLVLQVPPYEYAHAEDLAAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVL 194 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222 +R + +A K+++G P R +NLT AL+ G +GL++D + + + Sbjct: 195 VPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDL 254 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +A+++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 255 EALGGPVAIVVGSEGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGIVLY 306 >gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 13/240 (5%) Query: 48 NLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YG + V AL R+++ + L R + + F VP +D++V Sbjct: 4 GMRIYGRNPVLEALREGRVRRVWVARGVERWLVRQLEASGVELVF----VPRIELDQMV- 58 Query: 107 KEAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ E + +A +R ++ LL+++D V DP N GAILR+A A Sbjct: 59 RTTRHQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGA 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+++ +R S S V K+++GA IP +R+ NL ++ + G G + ++K Sbjct: 119 HGVVSEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKT 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL++G+EG+G+R +E + + + G ++LNV+ A +AL+ H Sbjct: 179 LAELDYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQH 238 >gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] Length = 251 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 9/232 (3%) Query: 50 FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V+A L NP +I+ ++A A+ D + V +D + G Sbjct: 6 LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65 Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ A + L L+ + LL++LD V DPHN+GA LR A A Sbjct: 66 N-ARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +A ++G+EG+G+R T+E + + M G +++LNVS ++ + L Sbjct: 185 HFDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVL 236 >gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] Length = 314 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L++ D + L++ LD V DP N+GA++RS AF G+ Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAAAHDEGTDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + +A K+++G P R +NLT AL++ G +GL++D + L Sbjct: 195 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGD 254 Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 307 >gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] Length = 316 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L+ P L + D + L++ LD V DP N+GA++RS AF G+ Sbjct: 138 HQGVVLQVPPYEYAHPEDLSAAAFDEGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 196 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + +A K+++G P R +NLT L+ G +GL++D + L+ Sbjct: 197 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQD 256 Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + +++G+EGKGL ET + MPG ++LN AA V LY Sbjct: 257 VEALDGPLVIVVGSEGKGLSRLVGETCDLRVRIPMPGGAESLNAGVAAGVVLY 309 >gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] Length = 258 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 25/243 (10%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-GK 107 + G H + AL S ++ ARL+ A L VK + +D++V G Sbjct: 5 ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMVPGI 64 Query: 108 EAVHQGLALE--------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + H+G ++ T +L+ ++S L+MVLD + DPHN+GAILRS Sbjct: 65 D--HRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDS-LVMVLDGITDPHNLGAILRS 121 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-- 211 A F D ++ +R S + +A+ +SGA +++P ++N+T L M GF G Sbjct: 122 ADQFGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNITSTLTMMKDHGFWIYGAD 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ +S + +E + +++G+EG G+ +E + + M G I +LNVS AA + Sbjct: 182 MNGESSETIE---FTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGI 238 Query: 272 ALY 274 +Y Sbjct: 239 LMY 241 >gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] Length = 251 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD V DPHN+GA LR+A A G+I + S + ++K A GA E +P +++ Sbjct: 103 FLLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVT 162 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + G +G + ++++ L + +A+ +G+E KGLR T+E+ S+ Sbjct: 163 NLARTMKSLQDKGIWIVGAAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVS 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A V L+ Sbjct: 223 IPMTGSVSSLNVSVATGVCLF 243 >gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.] Length = 247 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 87/153 (56%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L LD + LL+ LD V DPHN+GA LR A +I +R + +A AK+A+ Sbjct: 85 LETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAVIAPRRRAAGLTAAAAKAAN 144 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA E +PY+ + NL AL+ + + G Q IG + D+ L + +AL++GAEG G+R Sbjct: 145 GAAETVPYLTVINLARALRALKNAGIQVIGTADDATTSLFDIQLDGALALVMGAEGAGMR 204 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+E + + + G +++LNVS A+ + L+ Sbjct: 205 RLTREACDEVVRIPLAGHVQSLNVSVASGICLF 237 >gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36] gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36] Length = 250 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 16/239 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++G+H V + L + + ++ A K + L L + N V+ V T+DK Sbjct: 5 LIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELN-DIGISVQLVNRNTLDKKC 63 Query: 106 GKEAVHQGL---ALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155 H G+ E L LD + N LL++LD V DPHN+GA LRSA Sbjct: 64 DG-GRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S ++V+ K A GA E +P I ++NL ++++ +G + + Sbjct: 123 AAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAGE 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L Q +A+ +GAE KGLR T+E + + M G + +LNVS A + L+ Sbjct: 183 ATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241 >gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] Length = 252 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 13/198 (6%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAVRNS-QLLM 136 H PV+ VP +D++ AVHQG+ AP+ ++P+ +AVR LL+ Sbjct: 49 HGVPVQMVPKARLDRLAAG-AVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLV 107 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD + DPHN GAILR+A A G++ + + +A K+++GA IP R++NLT Sbjct: 108 ALDQIEDPHNYGAILRTAAAAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLT 167 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL+ + + GF G S + + + + + L+LG EG+GLRP + + + + Sbjct: 168 RALESLKAHGFWVAGASPSGEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPL 227 Query: 257 PGIIKALNVSNAAAVALY 274 G +++LNVS AA + L+ Sbjct: 228 RGPVESLNVSVAAGILLF 245 >gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779] gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon aurantiacus ATCC 23779] Length = 246 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 37/249 (14%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98 LYG + V AL RK+ +LL N +AR V V Sbjct: 3 LLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIAR-------ERRMQVAKVQR 55 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAIL 151 +DK A HQG+ALE +D + R Q L+++ DH+ DP NIG ++ Sbjct: 56 SELDKRTAG-ANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLM 114 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A GII R S S + + +++GA+EH+ +I+N+ ++ + + G Sbjct: 115 RTAEIVGAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAG 174 Query: 212 LSSDSKKPLEQEIKNDK------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + D E+ + DK +AL++GAEG GL T+E + L M G + +LN Sbjct: 175 VEDD-----ERAVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNA 229 Query: 266 SNAAAVALY 274 + A ++ LY Sbjct: 230 ATAGSIILY 238 >gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614] gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp. JS614] Length = 314 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 9/190 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPH 145 ++ V +D++ G AVHQGLA P LDA S L++ LD V DP Sbjct: 119 IQEVSRGELDRMTGG-AVHQGLAARIPPYEYAHPDDLLDAAAESGAPPLIVALDSVTDPR 177 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA F G++ +R S +A K+++GA +P + NL L+ Sbjct: 178 NLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEA 237 Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +GL++D L + ++ + + +++G+EG GL ET + + M +++LN Sbjct: 238 GCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLN 297 Query: 265 VSNAAAVALY 274 AA+VALY Sbjct: 298 AGVAASVALY 307 >gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1] Length = 295 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 24/241 (9%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFP--------VKTVPPQ 99 LYG H V +AL + P +I+ + L +D + TV P+ Sbjct: 45 LLYGRHAVLSALESGRPCNRIW-------VIPSLRYDPRFHQRLNEAKQQGAIIDTVTPE 97 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 +D++ + HQG+A++ A +L+ A N +L+ D + DP N+GA++R+ Sbjct: 98 RLDQLC-QRGRHQGIAIQVAAYNYWSLEDLLAKAATVNQPVLLAADGITDPQNLGAMIRT 156 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I +R + +A +AK+A+GALE++P R+ NL AL+ + + G+ GLS Sbjct: 157 AEALGMQGVIIPQRRAVGITATVAKAAAGALEYLPVARVINLNQALETLKAAGYWIYGLS 216 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 PL + + ++G+EG+G+ +TQ+ + + + G +LN S A +AL Sbjct: 217 EHGAVPLPKITFDRPTVFVVGSEGEGISLQTQKHCDEIVAIPLAGRTNSLNASVAVGIAL 276 Query: 274 Y 274 Y Sbjct: 277 Y 277 >gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] Length = 267 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 22/262 (8%) Query: 29 DYKKMQSFN-QKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 DY+ ++ +KS +S E LFL G V A+ L+A K W Sbjct: 17 DYRDLRDVELRKSLESS--EGLFLAEGEKVVRRAVTGGFEPRSFLMAPK-------WLDG 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEA----VHQGL--ALETAPLLSPTLDAV-RNSQLLMVLD 139 L P + + +E VH+G +L+ PL P++++V ++ ++VL+ Sbjct: 68 LADVLESTDAPCYVMSEKAAEEVTGFHVHRGALASLKRRPL--PSVESVLEGARSVLVLE 125 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GAI RS A D ++ R + K A GA+ +P+ R+ + +AL Sbjct: 126 DIVDHTNVGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEAL 185 Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + GF T+ L+ +D +E+ ++ DK+AL+LG+EG GL P+ Q+ A A + M Sbjct: 186 PSLSAAGFTTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMS 245 Query: 258 GIIKALNVSNAAAVALYITQNH 279 I +LNV+ A AVA Y+T Sbjct: 246 AGIDSLNVAAATAVACYVTARR 267 >gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA2] gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA2] gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA1] gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA2] gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA1] gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA3] gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA2] gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA2] gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA2] gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA3] gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA2] gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA3] gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA1] gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA3] gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA2] gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL020PA1] gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266] Length = 318 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%) Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G + HQG+AL L++ R L++ LD V DP N+GAI+R Sbjct: 128 LDRMTGG-SNHQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 185 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA IP +NL AL K + G+ +GL Sbjct: 186 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 245 Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ D + +++G+EG GL T+++ +A + + +++LN S AA++ Sbjct: 246 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 305 Query: 272 ALY 274 ALY Sbjct: 306 ALY 308 >gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4] Length = 246 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 106/186 (56%), Gaps = 10/186 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQ----LLMVLDHVNDPHNIG 148 VP + +D++V HQG+ + A +LD A+ S+ L+++LD + DPHN+G Sbjct: 53 VPKKKMDQMVSN---HQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLG 109 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I+R+A A GII KR + +A +AK+++GA+EHIP R++NL+ + ++ G Sbjct: 110 SIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIW 169 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + K+ Q + + L++G+EGKG+ +E + L M G + +LN S A Sbjct: 170 VTGTDAKGKQDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVA 229 Query: 269 AAVALY 274 A++ LY Sbjct: 230 ASLLLY 235 >gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA1] gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL074PA1] gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA1] gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA2] gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA1] gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA1] gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA1] gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA2] gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL007PA1] gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL056PA1] gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL086PA1] gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA4] gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA1] gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA3] gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL067PA1] gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA1] gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA1] gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA1] gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA1] gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA1] gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL045PA1] gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA1] gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA2] gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL078PA1] gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL038PA1] gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA2] gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA1] gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA2] gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA2] gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL097PA1] gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA1] gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA2] gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA3] gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA2] gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL092PA1] gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA1] gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA2] gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL099PA1] Length = 318 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%) Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G HQG+AL L++ R L++ LD V DP N+GAI+R Sbjct: 128 LDRMTGGSN-HQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 185 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA IP +NL AL K + G+ +GL Sbjct: 186 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 245 Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ D + +++G+EG GL T+++ +A + + +++LN S AA++ Sbjct: 246 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 305 Query: 272 ALY 274 ALY Sbjct: 306 ALY 308 >gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] Length = 208 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%) Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G HQG+AL L++ R L++ LD V DP N+GAI+R Sbjct: 18 LDRMTGGSN-HQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 75 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA IP +NL AL K + G+ +GL Sbjct: 76 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 135 Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ D + +++G+EG GL T+++ +A + + +++LN S AA++ Sbjct: 136 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 195 Query: 272 ALY 274 ALY Sbjct: 196 ALY 198 >gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 256 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 13/195 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----------LSPTLDAVRNSQLLMVLDH 140 P + V + +D++VG + HQG+ +P+ L+ D V LL V+DH Sbjct: 55 IPFQEVDGKVLDRMVGTSS-HQGVVARVSPVGILKLEDLYRLAGASDPVAAFALL-VVDH 112 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GA++R+A A ++ R + V+ K+++GA +P I + N++ A++ Sbjct: 113 VEDPHNLGAMIRTAEAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIR 172 Query: 201 KM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ G +GL + + + E +IAL++G+EGKGL + + M G Sbjct: 173 RVKEDLGLWAVGLEAQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGA 232 Query: 260 IKALNVSNAAAVALY 274 +LNVS AA + +Y Sbjct: 233 SGSLNVSVAAGIVMY 247 >gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] Length = 345 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 8/182 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D++ G ++VHQGLAL+ P L ++A LL+ LD + DP N+GAI+RS Sbjct: 151 LDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVPLLVALDGITDPRNLGAIVRS 210 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF G+I +R S +A K+++GA P +NLT +++ G +GL Sbjct: 211 VAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMANNLTQMIKEYKKRGVFVLGLD 270 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D L + + + +++G+EGKGL E ++ + + ++LN AA+V Sbjct: 271 GDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIVSIPISASTESLNAGIAASVT 330 Query: 273 LY 274 LY Sbjct: 331 LY 332 >gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] Length = 245 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ A+E L ++ + LL++ D V DPHN+GAI+R+A ++ Sbjct: 66 HQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIP 125 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 KR++ +A +AK+++GA+E IP +++ N+T ++++ GF +G + + L + Sbjct: 126 KRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADL 185 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 186 TIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMY 234 >gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] Length = 251 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 1/144 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +S L++VLD + DP N+GAILRSA FS +I +R S + + K +SGA +++P Sbjct: 100 DSALVLVLDEITDPQNLGAILRSADQFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLA 159 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++N+ ++ + S GF G +S S + + + + + L++G EGKG+ TQ+ Sbjct: 160 TVTNMNREIEYLKSQGFWVYG-ASMSGQAVYKTVFPKRTVLVMGNEGKGIGQLTQKLCDH 218 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 M + M G I +LNVS A + LY Sbjct: 219 MVTIPMSGHIDSLNVSVATGILLY 242 >gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 14/236 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVG 106 ++G++ VS AL R+++++ A + RL+ L ++ + + +D++ Sbjct: 4 LVFGINAVSEALKG-QRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDELC- 61 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ E L L+ ++ + L++LD + DP N+GAI+R+A Sbjct: 62 -EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGII S + +++ ++GA+EH+ IR +NL + ++ + GF +G + +++ Sbjct: 121 VDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKARQ 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G EG+G+R +E + + M G + +LN S AAA+ +Y Sbjct: 181 SYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIY 236 >gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera] Length = 569 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL L P L L + LD V DP N+GAI+RSA F G++ Sbjct: 372 HQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVV 431 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE + N+ L G+Q +G S + PL + Sbjct: 432 LCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLGGSVSPRAIPLNE 491 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVALY 274 L+LG+EG GLRP + + T + + +PG +++LNVS AA V L+ Sbjct: 492 ISPGAPTILVLGSEGTGLRPLVERSCTQL--IRIPGNIPSFLAVESLNVSVAAGVLLH 547 >gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6] gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6] Length = 250 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 15/238 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKI 104 LYG + V AL +R+ + L N + A + PV+ V Q +DK Sbjct: 4 LLYGRNAVREALR-ANRRTIKRLVVSNGVQETGIIAEIIKLAEQIGVPVQRVERQQLDKQ 62 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVL-DHVNDPHNIGAILRSAVAF 157 + ++A HQG+ LET L+ A RN L++L DH+ DP NIG +LR+A Sbjct: 63 L-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAEVV 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+ R + + + ++SGA EH+ + + NL + + G +GL D + Sbjct: 122 GVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDDEQ 181 Query: 218 -KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ N +AL++GAEG GL +E + L M G I +LN S A ++ LY Sbjct: 182 AQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLY 239 >gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPH 145 P + V +DK G + +A A T D + ++ ++VLD + DPH Sbjct: 51 PYQFVERAVLDKFSGGDKHQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+LR+A A GII R S + +AK+++GA+E++P R+ NL AL+++ Sbjct: 111 NLGALLRTADAAGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNLVQALKQLKKA 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + ++ ++ L++G E KGL +ET + L M G + +LN Sbjct: 171 GCWVTGAEAGGRDVFSADLSGPRV-LVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNA 229 Query: 266 SNAAAVALY 274 S A ++ +Y Sbjct: 230 SAAGSILMY 238 >gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] Length = 257 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 1/154 (0%) Query: 122 LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L A RNS LL++L + DPHN+GAI+R+A A + D +I + SA + K++ Sbjct: 96 LDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADSVIMIEGKGAPISATVHKAS 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GAL H+ ++ +L L +H GF + +++ L++GAEGKGL Sbjct: 156 AGALSHMRVCKVKSLVKTLDLLHERGFSIVAADMEAEHNHTDIDWKRPTVLVMGAEGKGL 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T++ + + M G +++LNVS AA V LY Sbjct: 216 GSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLY 249 >gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] Length = 238 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 9/172 (5%) Query: 111 HQGLALET-----APLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGLA E APL L +A + LL+ LD + DP N GA++RSA+A G++ Sbjct: 59 HQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHGVV 118 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ 222 + +R S S + K+++GA +P +++ NL AL+++ G GL +K P E Sbjct: 119 SEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPREL 178 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL+LG+EG+G+R +E+ + + M ++LN S A +ALY Sbjct: 179 DFQRP-LALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALY 229 >gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] Length = 329 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 15/188 (7%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNI 147 +D++ G EAVHQG+ L+ P A +R LL+ LD + DP N+ Sbjct: 133 LDRLSG-EAVHQGIVLQIPPYEYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNL 191 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+ AF DG+I +R S +A ++++GA +P + NL L +H G+ Sbjct: 192 GAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGY 251 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL L + + + L++GAEGKGL +E + + + +++LN S Sbjct: 252 FVLGLDGGGDVSLPGLALATEPLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNAS 311 Query: 267 NAAAVALY 274 A ++LY Sbjct: 312 MAVGISLY 319 >gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] Length = 249 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG+H V AL R+ + +++ D VKT P Q+ K G Sbjct: 5 LLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKT-PDQSFFK--G 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++ QG+A + L+ + +++D +NDP N GA++R+A+ + Sbjct: 62 QDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCAGVN 121 Query: 161 GIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I KR SP AV +K+++GALEH+P R+ NL ++Q + G GL + + Sbjct: 122 GVIMPDKRSSPLSPAV-SKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARASGT 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A+++G EGKGLRP ++ + + G + +LN S A A+++Y Sbjct: 181 VWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMY 235 >gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] Length = 314 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L++ D + L++ LD V DP N+GA++RS AF G+ Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAAAHDEGIDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + +A K+++G P R +NLT AL++ G +GL++D + L Sbjct: 195 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGD 254 Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 307 >gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6] gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus veneficus SNP6] Length = 227 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 25/234 (10%) Query: 51 LYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPF-PVKTVPPQTIDKIV 105 +YGV++V AL + K++ LAT N L R+ A +P + P + +PP + Sbjct: 3 VYGVNSVVEALKAKKANKVY--LATGNRRDRLERMARRAGVPIVYVPKEKLPPDS----- 55 Query: 106 GKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A + +P+ +D +R + L+ LD V DP N+GA +R+A F C Sbjct: 56 ------QGVAADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCA 109 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ KR + + + K ++GA H+ R N+T+AL+K +G + IG D + + Sbjct: 110 GVVIPKRRAVQVNETVVKVSAGAALHVSIAR-DNITNALKKAKKFGIKVIGAELDGEN-I 167 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E AL++G E +G+ ++ + + G + +LN+S AA + +Y Sbjct: 168 ENADLTPPAALVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMY 221 >gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] Length = 258 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 15/179 (8%) Query: 111 HQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L+ P L R LL+VLD + DP+N+GA LR+AVA Sbjct: 71 HQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVAMGVS 130 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKP 219 +I K +S S + +AK A GA+E +P+I+++NL L + G G + D+ KP Sbjct: 131 AVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDDTAKP 190 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 ++ +A+++G+EG G+R T +T + ++ MP G I++LNVS A + LY Sbjct: 191 VQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMVLY 249 >gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] Length = 246 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD V DPHN+GAILRSA A G+I +R +A +A++A GA E++P R++ Sbjct: 95 FLIMLDRVEDPHNLGAILRSAEAVGAHGVIIPRRRGVGLTAAVARAAVGAQEYVPVARVT 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L+++ G IG + D+ + + L+LG+EG+GL P + H Sbjct: 155 NLARTLEELKGKGLWAIGAAGDAGQEAFNADFTVPLVLVLGSEGRGLSPLVRSRCDFTVH 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G I +LNV+ AA V +Y Sbjct: 215 LPMRGRINSLNVATAATVLMY 235 >gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] Length = 249 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 ++ P + ++++V + HQG+ A +D + R + ++LD + DPH Sbjct: 50 IQNAPKKKLEQLV-DSSNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A A GII KR + + +AK+++GA+E+IP +R++N+ + + Sbjct: 109 NLGSIMRTADAAGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKR 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + Q + I L++G+EGKG+ +E + + M G + +LN Sbjct: 169 GLWFAGTDAKGSADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNA 228 Query: 266 SNAAAVALY 274 S AA++ +Y Sbjct: 229 SVAASLLMY 237 >gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 320 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 8/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD---AVRNSQLLMVLDHVND 143 V VP +D++ G +HQGL L + +D A ++ L++ LD++ D Sbjct: 117 ITVLEVPRIELDRMTGN-GMHQGLGLLVPEYQYVDVQDLIDRAHASSSTGLIVCLDNITD 175 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RS AF G++ +R S S +AV ++++G +P + +N+T AL++ Sbjct: 176 PRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMTRALKQFQ 235 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q +GL + L+ + +++G+EGKGL ET ++ + M +++L Sbjct: 236 KEGYQVVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVSETCDTIMSIPMADNVESL 295 Query: 264 NVSNAAAVAL 273 N S AA V L Sbjct: 296 NASVAAGVVL 305 >gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1] gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum PYR-GCK] gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1] Length = 314 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 7/172 (4%) Query: 109 AVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P + D +R+++ LL+ LD+++DP N+GAI+RS AF G Sbjct: 133 GLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGAIVRSVAAFGGHG 192 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA P R +NL L++ G Q +GL + ++ Sbjct: 193 VVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQVVGLDAGGDTTID 252 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +++G+EGKGL +E + + M G ++LN S AA V L Sbjct: 253 EIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVAAGVVL 304 >gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus propionicus DSM 2032] Length = 269 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 99/173 (57%), Gaps = 4/173 (2%) Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +V +++ + L+LE LL+ D + +Q ++VLD + DP N+G+ILRSA+A + Sbjct: 92 VVARQSEARLLSLED--LLAGITDEEQTTQARILVLDSLQDPRNVGSILRSALAAGFSRV 149 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLE 221 I T+ S + +A++++GA+ H+ ++ NL DAL ++ GF G ++ + P+ Sbjct: 150 ILTRERSVPLTGTVARTSAGAVSHLRLCQVVNLVDALNRLKEQGFWIFGAIAEANAAPIY 209 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G+EGKG+RP ++ + + M +LN S AAAV ++ Sbjct: 210 TTDFSGPICLVIGSEGKGIRPLVRKQCDVLVTIPMQASFNSLNASVAAAVIMF 262 >gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] Length = 249 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 16/240 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTID 102 L G H V A L + + +L + R D A V+ + ++ Sbjct: 5 LMYSGFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLE 64 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K G + HQG+ P L LD S LL++L++V DPHN+GA LRSA Sbjct: 65 KHAGPQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I +R + + V ++A GA E + Y I NL L ++ G +G + + Sbjct: 123 AAGVQAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALE 182 Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L + +A+++GAEG GL+ T++ + + M G +++LNVS A V L+ Sbjct: 183 ERSESLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLF 242 >gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] Length = 298 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 82/151 (54%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PTL LL+VLDH+ DPHN+GAI+R++ A ++ +KR S + K ++GA Sbjct: 135 PTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGGTVVKVSAGA 194 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P I ++N+ + ++ GF +GL ++ + L DK +L++GAEG+GL Sbjct: 195 ALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPDKSSLVVGAEGEGLSRL 254 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + G +LN AAA+ ++ Sbjct: 255 VAQRCDMLLRIPITGKTGSLNAGVAAALGMF 285 >gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] Length = 329 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 15/188 (7%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNI 147 +D++ G EAVHQG+ L+ P A +R LL+ LD + DP N+ Sbjct: 133 LDRLSG-EAVHQGIVLQIPPYEYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNL 191 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+ AF DG+I +R S +A ++++GA +P + NL L +H G+ Sbjct: 192 GAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGY 251 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL L + + + L++GAEGKGL +E + + + +++LN S Sbjct: 252 FVLGLDGGGDVCLPGLALATEPLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNAS 311 Query: 267 NAAAVALY 274 A ++LY Sbjct: 312 MAVGISLY 319 >gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 221 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 13/159 (8%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145 V++VP +D+I + HQG+AL A TLD + + + ++LD + DPH Sbjct: 58 VQSVPKSKLDEI-SEGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPH 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+ILR+A A G+I KR + +A +AK ++GA+EH+P +R++NL + + + Sbjct: 117 NLGSILRTADAAGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKER 176 Query: 206 GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 G G ++ + + L+ AL++G EGKG+ P Sbjct: 177 GLWIFGTDMAGEDYRHLD---ATGPTALVIGNEGKGISP 212 >gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 322 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 21/273 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATK 75 +H K+ + + KK Q+ ++R + + N + G + V A++ I ++ Sbjct: 46 AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD-AGIDIIRVFLAG 104 Query: 76 NAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLSP 124 NAL R+ PV V ++ G E+ HQ + +E LL Sbjct: 105 NALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPEYDYCSAQDLLER 163 Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 T + N+Q L++ LD V DPHN+GA+LRS AF G++ ++R S S +A K ++G Sbjct: 164 TKE---NAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVNAAAWKVSAG 220 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 A +P R +NL AL ++ G +GL L ++ + ++ GAEGKGL Sbjct: 221 AAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVVTGAEGKGLS 280 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +ET + + + +++LN + A +ALY Sbjct: 281 RLVRETCDQIVSIPISSAVESLNAAVATGIALY 313 >gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] Length = 248 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 19/243 (7%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + F+ G H AAL + K+F K+ + A V VP +D Sbjct: 4 QKTDDFVIGRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKTKLD 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155 ++ HQG+ L A L+ A + + ++LD + DPHN+G+ILR+A Sbjct: 64 -LLSDGQNHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILRTAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR + ++ +AK+++GA+E++P R++NL + ++ + G G +D Sbjct: 123 AAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFG--TD 180 Query: 216 SKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 K Q+ +N AL++G EGKG+ ++ M + M G +++LN S AA++ Sbjct: 181 MKG---QDFRNWDAKGPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASL 237 Query: 272 ALY 274 +Y Sbjct: 238 LIY 240 >gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] Length = 241 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 108/196 (55%), Gaps = 13/196 (6%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL-----LSPTLDAVRNSQLLMVLDHVNDP 144 P+K V I+K+VG + QG+ + + P + TL+ N +++VLDH+ DP Sbjct: 49 PIKYVERSVIEKMVGGNS--QGVLAIISSVPYREWEDIEKTLN---NKSVIVVLDHIQDP 103 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI R++ I+ K S ++ K+++GAL +IP +R+SN+ + L+++ Sbjct: 104 HNLGAIARTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKK 163 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ +G D++ Q +AL++G+E +GL +E+ + + G +++LN Sbjct: 164 KGWFIVGADLDTENLYNQVNYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLN 223 Query: 265 VSNAAAVALY-ITQNH 279 VS A + LY I ++H Sbjct: 224 VSVALGIILYKIRESH 239 >gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii SL3/3] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%) Query: 24 RRNHRDYKKMQSFNQKSR---HTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 R +++KKM+ NQ R QP+ +YG + V+ L + S L+A A Sbjct: 21 RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80 Query: 78 LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------A 128 A + L VK V P + + G E+ HQG+A + + T++ A Sbjct: 81 PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++N+ + ++++ G D L + IAL+LG+EG G+ ++ Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLC 258 Query: 249 TSMAHLHM--PGI-IKALNVSNAAAVALYITQNHFA 281 + L M PG + + NVS AA + LY Q+ A Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%) Query: 24 RRNHRDYKKMQSFNQKSR---HTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 R +++KKM+ NQ R QP+ +YG + V+ L + S L+A A Sbjct: 21 RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80 Query: 78 LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------A 128 A + L VK V P + + G E+ HQG+A + + T++ A Sbjct: 81 PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++N+ + ++++ G D L + IAL+LG+EG G+ ++ Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLC 258 Query: 249 TSMAHLHM--PGI-IKALNVSNAAAVALYITQNHFA 281 + L M PG + + NVS AA + LY Q+ A Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo] gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo] Length = 246 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 85/141 (60%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT+++S +++ + +++SGA +++ I ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKHSAKDNSTVLRTSSGASQYVKKITVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + GF + + +I + KIALILG EGKG+ T++ + + Sbjct: 157 NINNTINFLKKHGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLTKQNSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS +A + ++ Sbjct: 217 IPTSGKIDSLNVSVSAGILIF 237 >gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 250 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 20/250 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103 N +YG+H + + N S KI +L K+ +L +N +K V + ++K Sbjct: 2 NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISN-EKNIKIKFVDKKFLNK 60 Query: 104 IVGKEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I + HQG+ + P L L+ +N ++LD + DP N+G+ +RSA Sbjct: 61 ITNNKK-HQGIVAYIKNSKILKEPFLLKMLENKKN-YFFLILDGIMDPRNLGSCIRSAYI 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F +I K S S+ + K ASG+L+ IP I ++NL + + + Q IG S + Sbjct: 119 FGVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA--LNVSNAAAVALY 274 + + + IA+++G+E G+ +E ++ L++P + LN+S A + ++ Sbjct: 179 QLDICNKKLKQSIAVVMGSENLGISRLVKENCDNI--LNIPTVKNNLPLNISVATGICIF 236 Query: 275 --ITQNHFAK 282 I +N+ K Sbjct: 237 EIIRKNYLNK 246 >gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 258 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 14/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 YG H V A L + ++L ++ +L +D + PV V +T+D++ G Sbjct: 9 ICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRVSG 68 Query: 107 KEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ L L + +++ L++V D + DP+N+GAI+RSA F Sbjct: 69 G-ASHQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVFGA 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I KR S S+ + KS++GA + + +SNL A++++ G +GL + + Sbjct: 128 LGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRADRY 187 Query: 220 LEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L E I+ K+ L++G+E G+ P + + M G +LN + AA++ +Y Sbjct: 188 LWDEPSIRG-KLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMY 243 >gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] Length = 180 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 7/144 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+G+ILR+A A DGII +R + ++V+AK+++GA++++P +R++ Sbjct: 25 FLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVN 84 Query: 194 NL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 NL D L+ W F T +S D+ + K L++G EGKG+ P + Sbjct: 85 NLVQTVDTLKDKGYWFFGT-AMSGDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQ 140 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +++LN A + LY Sbjct: 141 TLTIPMTGHVQSLNAGVATGILLY 164 >gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC 51908] Length = 245 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 79/141 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD V DPHN+GA LR+A A G+I + S + ++K A GA E +P +++ Sbjct: 98 FFLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + G +G + ++ L + +A+ +GAE KGLR T+E+ S+A Sbjct: 158 NLARTMKSLQEKGVWIVGAAGEADSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A + L+ Sbjct: 218 IPMAGSVSSLNVSVATGICLF 238 >gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 117/251 (46%), Gaps = 28/251 (11%) Query: 45 QPENLFLYGVHTVSAALNN-PS--RKIF-------QLLATKNALA---RLDWD------- 84 QPE ++G+H V+ L P RK++ +A LA R+ D Sbjct: 42 QPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGRVAAIVELAASHRIPLDRAGLPPA 101 Query: 85 -ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A LPH + PP + E + + AL AP SP A LL+VLD + Sbjct: 102 AAELPHQGVAARVAPPSPLSL---AELLQRLPALGPAPASSP---AAGPPPLLLVLDSLQ 155 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GA+LRSA AF DG+I K S S + K+A+G + R +NL AL + Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G S ++ L + L+LG E KG+RP ++ + + + +++ Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275 Query: 263 LNVSNAAAVAL 273 LNVS AA + L Sbjct: 276 LNVSVAAGIML 286 >gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] Length = 213 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 26/218 (11%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 G + ++ + Q +A+++GAEG G+R T+ET Sbjct: 174 GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETC 211 >gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 313 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL L+ P L++ D + L++ LD V DP N+GA++RS AF G+ Sbjct: 135 HQGLVLQVPPYEYAHPEDLVAGAHDEDEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + +R + +A K+++G P R +NLT AL+ G +GL++D + + E Sbjct: 194 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGIVVVGLAADGEAEIGE 253 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 254 LDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 306 >gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] Length = 265 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A TAP +L AV ++V+DHV DPHN GAI+RSA G+I Sbjct: 85 HQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVMDHVLDPHNFGAIVRSANLCGAHGVI 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R S S +AV K+++GA+ +++ NL L+ + + GF + + + P Sbjct: 145 FPDRRSASVTAVSMKASAGAMNATSMVKVGNLARCLETLKAQGFW-VAAADMAGAPYYTR 203 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 K+AL++G+EGKG+ P ++ A + G I + N S AA + Sbjct: 204 DFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYGSIDSFNASVAAGI 251 >gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114] Length = 248 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 27/245 (11%) Query: 48 NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96 N +++G+H A L +P+R ++F +LL N L +L F ++ + Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLG--------FKIQEL 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150 P +T+D A HQG+ P L LD + + LL+VLD V DPHN+GA Sbjct: 55 PRKTLDD-KANGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + ++ + Q +A+++GAE + K +T + + M G + +L VS A+ Sbjct: 174 GTAGEATHDVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVAS 233 Query: 270 AVALY 274 + L+ Sbjct: 234 GICLF 238 >gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 248 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 17/238 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+ V A+ ++ +L ++ +LD A L P + P +D+ Sbjct: 4 LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDR-RSA 62 Query: 108 EAVHQGLALETAPLLS----PTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFS 158 HQG A+ +AP L + V Q + + LD V DP N GA++RSAVA Sbjct: 63 GGRHQG-AVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I+ + S + ++++GA+EH R+ +L DAL+ + + G I L D++ Sbjct: 122 ARAILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIAL--DAQG 179 Query: 219 PLE-QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E E+ +A+++GAE KG R + +A L M G I +LN S A A+ALY Sbjct: 180 PVELGELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALY 237 >gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] Length = 251 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 20/199 (10%) Query: 89 HPFPVKTVPPQTIDKIVGKEAV-HQGLAL--------ETAPLLSPTLDAVRNSQLLMVLD 139 H V+ V + +D +V E V HQG+ E LL+ + + + L++LD Sbjct: 51 HGVIVQFVDKRKLDTMV--EGVQHQGVVAQAAAFAYAEIEDLLARARE-LNETPFLLILD 107 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+G+ILR+A G+I KR S +A + K+++GA EH+P R++NL + Sbjct: 108 EIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTI 167 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQETATSMAHLH 255 ++ G G +D P Q++ K +A+++G EGKG+ +E + L Sbjct: 168 DRLKEEGVWVAG--TDVSAP--QDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLP 223 Query: 256 MPGIIKALNVSNAAAVALY 274 M G + +LN S AA V +Y Sbjct: 224 MHGRLNSLNASVAAGVLMY 242 >gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519] gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii] Length = 242 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%) Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L LD +R ++LD + DPHN+GAI+RSA G+I KR S S +A + K Sbjct: 79 LEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAHGVIIPKRRSASVNATVEK 138 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +A+GA ++ I+++NL ++K+ G L D + ++K +AL++G EGK Sbjct: 139 TAAGAASYMKVIKVTNLVSTVEKLKKEGIWIYALDMDGESYDTVDLKG-SVALVVGNEGK 197 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ ++ + M G + +LN S AA++ LY Sbjct: 198 GISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLY 233 >gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii] gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii] Length = 244 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 24/244 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLL----------ATKNALARLDW--DANLPHPFPVKTVPP 98 LYG+ V AAL R ++ L + ALA + W A V+T Sbjct: 3 LYGIGPVRAALQARRRDLYVLYIQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-------LDHVNDPHNIGAIL 151 ++ +V HQG+ L+ +PL + A+ ++ LD V DP N GAIL Sbjct: 63 HALNVLVDNRP-HQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RS+ F G++ + S S V++K+++GALE I + N+ L+ G++ IG Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181 Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S+ + + ++ KN L+LG EG G+RP A + PG + +LNVS AA Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR---PGTVDSLNVSVAAG 238 Query: 271 VALY 274 V L+ Sbjct: 239 VLLH 242 >gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 19/239 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHP--FPVKTVPPQTIDKIVG 106 F+YG + V L + S KI Q+ + + D D L H +K V +T+ ++ Sbjct: 4 FVYGKNVVKQMLMDNS-KIKQIYMSVD-----DRDVEQLAHKQRVQLKRVDKKTLTQMT- 56 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 K HQG+ E P ++D + L+++LD + DPHN+GAILR+A A Sbjct: 57 KTDRHQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGAT 116 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A +AK ++GA++ + ++NL+ L+ + G+ +G D + Sbjct: 117 GVIFKKTNAVGLTATVAKVSAGAIDTVKCASVTNLSRTLEDLQKKGWWAVGTDMDGQDY- 175 Query: 221 EQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +K D LI+G EGKG+ +E + L M G I++LN + +A + +Y N Sbjct: 176 -RSVKYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYN 233 >gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 240 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 121/241 (50%), Gaps = 19/241 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++YG + V L +KI+++L + AL +L + H K +P + +D ++ Sbjct: 4 YVYGKNVVKQLLQE-DKKIYEILMAEGMRDTALEKLIKE----HKITCKILPRKKMDGML 58 Query: 106 GKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+A +T LL L+++ + L ++LD + DPHN+GAILR+ Sbjct: 59 --QGNHQGIAAKIDDYKTYELLE-LLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVG 115 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I K + + +AK ++GA++ + ++NL +++ + GF +G ++ + Sbjct: 116 VDGVIIGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSR 175 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + +++G+EG G+ ++ L M G++ +LN S A + LY N Sbjct: 176 DYREGQYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYN 235 Query: 279 H 279 Sbjct: 236 Q 236 >gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] Length = 297 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 9/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARL 81 ++N+ K M++ N+ ++ T F+YG + V AL + ++ I ++ + K + Sbjct: 31 KKNNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHSAKYIEKIYFSSKKKKNQKG 90 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LL 135 D + + + I + + + +A+ DA+R + L+ Sbjct: 91 IEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAYRDIDDALRLADIRGEKPLV 150 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DP N+GAI+R+A GII K + + +AK + GA+ IP I ++NL Sbjct: 151 LVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIPCIMVTNL 210 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL+ + GF ++ EQE +AL+LG EGKG+ + + Sbjct: 211 AAALKDLKQRGFWVYAADANGDSCFEQEF-GGSVALVLGNEGKGISKLCLNESDYKVSIP 269 Query: 256 MPGIIKALNVSNAAAVALY 274 M +LNVS AA + +Y Sbjct: 270 MVNDFDSLNVSVAAGILMY 288 >gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 175 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 RN ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP Sbjct: 19 RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 79 VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LN S AA++ +Y Sbjct: 139 DFLITLPMVGKVTSLNASVAASLLMY 164 >gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1] Length = 252 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 25/243 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101 LYG + V AL R +LL + A + R+ + +P V+ + + + Sbjct: 4 LLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVP----VERIDRREL 59 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ----LLMVLDHVNDPHNIGAILR 152 D+ + ++A HQG+ALE + P +D A+ + L++LDH+ DP N+G +LR Sbjct: 60 DRRL-RDANHQGVALECSDY--PYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLR 116 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G++ R + + + ++SGA+EH+ ++NL ++++ G +G+ Sbjct: 117 TAEVVGVHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGV 176 Query: 213 SSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D + + D +AL+LGAEG GL T+E + L M G I +LNV+ A ++ Sbjct: 177 EDDERAYEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSI 236 Query: 272 ALY 274 LY Sbjct: 237 VLY 239 >gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] Length = 267 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DPHN+GAI+RSA DG+I K + S V+ K ++GA E I +++ Sbjct: 111 LFVALDSVTDPHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVT 170 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL+++ GL++ + L + L+LGAEG GLRP T + Sbjct: 171 NLARALEQLKQAEVWIAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLI 230 Query: 253 HLHMPGI-IKALNVSNAAAVALY 274 + M G + +LNVS AA VALY Sbjct: 231 EIPMLGAGVGSLNVSVAAGVALY 253 >gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] Length = 175 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 RN ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP Sbjct: 19 RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 79 VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LN S AA++ +Y Sbjct: 139 DFLITLPMVGKVTSLNASVAASLLMY 164 >gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 226 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 21/210 (10%) Query: 80 RLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAP-----------LLSPTL 126 RL L PF V+ +++K+ G HQG+ P LL+ T Sbjct: 14 RLQKILQLAEPFGISVQKASRDSLEKLAGLP-FHQGVVAAVRPHPTLNEKDLDQLLAETP 72 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 DA LL+ LD V DPHN+GA +R+A A +I + S S + K A+G E Sbjct: 73 DA-----LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 127 Query: 187 IPYIRISNLTDALQKM-HSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244 + +I+++NL L + + + IG D P+++ + + +++GAE GLRP T Sbjct: 128 VKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPIT 187 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q A++ M G +++LNVS A +ALY Sbjct: 188 QAQCDQKAYIPMSGNLQSLNVSVATGMALY 217 >gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] Length = 270 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 16/262 (6%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79 ++R N R ++ Q + HT L + G + V A + P K+F L ++ Sbjct: 5 RMRENSRYHEAENHTGQDNSHT-----LVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPV 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 R H + V + + +I + HQG+ A T+D + Sbjct: 60 RTIVREAKKHDALLNFVTKERLSQI-SETGKHQGVVAYAAAYEYSTVDDMLALAEERGED 118 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P ++ Sbjct: 119 PFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKV 178 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL ++++ G + D +P+ I L++G EG+G+ +E +A Sbjct: 179 TNLVKTMEELKEKGLWFVCADMDG-EPMYHLNLTGPIGLVIGNEGEGVSRLVKENCDFVA 237 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 238 GIPMKGQINSLNASVAAGVLAY 259 >gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 161 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 RN ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP Sbjct: 5 RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 64 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 65 VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGEKC 124 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LN S AA++ +Y Sbjct: 125 DFLITLPMVGKVTSLNASVAASLLMY 150 >gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 269 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 101 IDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +D+I G E HQG+ P + LL+ +DHV DPHN GA++R+A A Sbjct: 84 LDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAMDHVKDPHNFGAMIRTAEAV 142 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I R S + + K+++GA +P ++NL +++ + G+ +GL + Sbjct: 143 GALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRSMEILKKEGYWVVGLDHEEP 202 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + DK+ L++G+EG+GL + E + + M G +LN S AAA+ ++ Sbjct: 203 RDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVGKTGSLNASVAAALGMF 259 >gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor salsuginis DSM 16511] gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor salsuginis DSM 16511] Length = 233 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQGL E +L V+ ++VLD + D NIGAI+RSA A DGI+ T Sbjct: 65 HQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATGIGQL 124 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + SAV +++SGAL +P+ N+ D L ++ G + G S + +P+E+++ + K Sbjct: 125 NFSAV-TRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEG-EPIEEKLFDRKRT 182 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG+E +G+ K +E + M +LNVS AAA+ ++ Sbjct: 183 LVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226 >gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] Length = 243 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D V DPHN+GAI+R+A ++ KR++ +A +AK+++GA+E IP ++I Sbjct: 94 LLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQIG 153 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++++ GF +G + + L + +++G EGKG+ +E + Sbjct: 154 NVVQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AAAV +Y Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234 >gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 161 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 RN ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP Sbjct: 5 RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 64 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 65 VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 124 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LN S AA++ +Y Sbjct: 125 DFLITLPMVGKVTSLNASVAASLLMY 150 >gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 243 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI-DKIVGKE 108 ++YG +TV +L + ++++ KNA V V + + +++VG Sbjct: 4 YIYGKNTVLESLKG-EKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVG-N 61 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ +T ++D + ++ LL++LD + DPHN+GAILR+ A DG+ Sbjct: 62 VVHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S ++ +AK ++GA++++ +++NL+ L + GF +G + + Sbjct: 122 IIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRA 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ + L M G + +LN S A A+ LY N Sbjct: 182 IDYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYN 237 >gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 333 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 80/141 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DPHN+G+ILR+A A G++ KR + +A ++K+++GA+E++P R++ Sbjct: 185 FIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAGAIEYVPVARVT 244 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + +G +K + IAL++G+EG+G+ E + + Sbjct: 245 NIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGPIALVIGSEGEGMGKLVSEKCDFVVN 304 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G I +LN + A A+ +Y Sbjct: 305 LPMKGQISSLNAAVAGAIVMY 325 >gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] Length = 246 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 9/215 (4%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 KIF TKNA + ++A P VP ++K+V HQG+ +P+ TL Sbjct: 25 KIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLVPLN--HQGIVALLSPVPLVTL 82 Query: 127 DAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L+++LD V D N+GAI+R+AV ++ K+ S S + K+ Sbjct: 83 SHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHALVLPKQGSASLGSGAMKT 142 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++GAL H+P R +NL ++ + + G Q I ++ + Q A++LG+E KG Sbjct: 143 SAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIYQVKLTVPTAILLGSEDKG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++P+ A + M G I +LNVS AAA+ LY Sbjct: 203 IQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILY 237 >gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] Length = 255 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + S L+++ D + DPHNIGAI+RSA F D +I +R+S +S ++AK ++GA +P Sbjct: 104 KESALILMADSITDPHNIGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPL 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + NL ++ GF G + S +P+ + K LILG+EG G+ + Sbjct: 164 IEVPNLVRTAEQCKKEGFWVYGADA-SGEPIGKLSFPQKTLLILGSEGSGIARLLKNCCD 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 S+ + G + +LNVS AA + LY Sbjct: 223 SLIAIPTRGKLDSLNVSVAAGILLY 247 >gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] Length = 267 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 15/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 D +KM ++S QP+N +YG + V+ L + S L+A A A + + Sbjct: 2 DEQKMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAM 61 Query: 88 PHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138 VK V P + + G E+ HQG+A + + T++ + N L++ Sbjct: 62 AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLS 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ G D PL + IAL+LG+EG G+ ++ + L M Sbjct: 181 IRRLKDQGVFVYCADMDG-VPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAA 239 Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265 >gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] Length = 320 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 17/213 (7%) Query: 78 LARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDA 128 + RLD D + PV +D++ +VHQG+AL P + D Sbjct: 97 MVRLDADERVREIMRLATARGLPVAEASRTDLDRMT-DHSVHQGVALTIPPYEYADVQDL 155 Query: 129 VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +R ++ LL+ LD + DP N+GAILRSA AF G+I +R S S +A + K A+G Sbjct: 156 LRIAEERFEPPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAG 215 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 A + +++NL L + +GL ++ E+ L++GAEGKGL Sbjct: 216 AAGRVRVAQVTNLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGLS 275 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + M G ++LN S AAA+ALY Sbjct: 276 RLARDICDQVVSIPMGGRAESLNASVAAAIALY 308 >gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D V DPHN+GAI+R+A ++ KR++ +A +AK+++GA+E IP +++ Sbjct: 94 LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++++ GF +G + + L + +++G EGKG+ +E + Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AAAV +Y Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234 >gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] Length = 245 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ ET P +P D + + L++LDH+ DPHN+GA++R+A A CDGII Sbjct: 68 HQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAAGCDGIIIP 127 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R + + ++A+GA E++P ++ NL L + G G D + Sbjct: 128 ERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGESVYTTGDY 187 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G+EG+GL +E + L M G + +LN S A A+ +Y Sbjct: 188 QGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMY 236 >gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] Length = 246 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] Length = 243 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D V DPHN+GAI+R+A ++ KR++ +A +AK+++GA+E IP +++ Sbjct: 94 LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++++ GF +G + + L + +++G EGKG+ +E + Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AAAV +Y Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234 >gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] Length = 243 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D V DPHN+GAI+R+A ++ KR++ +A +AK+++GA+E IP +++ Sbjct: 94 LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++++ GF +G + + L + +++G EGKG+ +E + Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AAAV +Y Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234 >gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A] gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A] Length = 236 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + +P TLD + + ++++ D + DP N+GAI+R++ A C G+I Sbjct: 56 HQGIAAQVSPYSYYTLDRLITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R + S ++ +AK A+GALE P R+ NL AL+ + + GF G ++ K L Sbjct: 116 IPQRRAASITSSVAKVAAGALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNF 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + I L++G+EG GL TQ + + + G Sbjct: 176 DFSCAIGLVIGSEGNGLNLLTQRYCDELLSIPLEG 210 >gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] Length = 241 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 8/231 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V A L + +K+++++ + + P K + +D + Sbjct: 4 YVYGKNVVKALLAD-KKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFSGSN 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + + T++ + + L ++LD + DPHN+GAILR+ DG+I Sbjct: 63 -HQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +AK ++GA++ + ++NL L+ + GF G D+ + Q Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G+EG G+ P ++ L M G + +LN S A AV LY Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLY 232 >gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 325 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 109 AVHQGLALETAPL-LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A+E +P D + S LL+ LD V DPHN+GA+LRSA AF DG Sbjct: 143 ASHQGVAIEVRGYEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDG 202 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S + K ++GA +P R +NL AL+ GF +GL PL Sbjct: 203 VIIPERRSAGVTTAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLR 262 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + L+ GAEG GL ++T + + + +++LN + A +ALY Sbjct: 263 GLPLADGPLVLVAGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALY 316 >gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09] Length = 246 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 77/141 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD V DP N+GA R A A D +I K + +A + K A G E +P++ ++ Sbjct: 99 LFLILDGVVDPQNLGACFRVADAMGVDALICPKDNAVGLNATVRKVACGGAESVPFVVVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + + G ++ K L++ IAL++G+EGKG+R T E + Sbjct: 159 NLARTIRYLKNSNVFVYGTDDNANKSLQKTNFKGSIALVMGSEGKGMRRLTNELCDDIFS 218 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LNVS A+ + LY Sbjct: 219 IPMMGQVESLNVSVASGICLY 239 >gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] Length = 323 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ P T A N + L++ LD V DP N+GAI+RS AF G++ Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 +R + +A K+++G P R++NLT ALQ G +GL+++ + Sbjct: 200 IPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDL 259 Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ + +++G+EGKGL E + + MPG ++LN AA V LY Sbjct: 260 AELAG-PVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311 >gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31] gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31] Length = 228 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 79 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 138 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 139 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 198 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 199 IPTSGKIDSLNVSVSTGILIF 219 >gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581] gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae] Length = 229 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG + P+ L+ ++ Q L++LDH+ DP+N+GAI+RSA A II + Sbjct: 56 HQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNKR 115 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKND 227 + + V K +SG I +I +++L+ A++K+ WGF + D S ++ N Sbjct: 116 ASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLNT 175 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G+E KG+ + A + ++ M G +++LNVS A + L+ Sbjct: 176 PAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222 >gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] Length = 246 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQNINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 248 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 17/241 (7%) Query: 48 NLFLYGVHTVSAAL-NNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YG+H V A L +P ++++ L + + +K V Q +D Sbjct: 2 NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLDMQ 61 Query: 105 VGKEAVHQGLA---------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V K A HQG+ + L P L A + LL+VLD V DPHN+GA LR A Sbjct: 62 V-KGATHQGIIARVQTNRRQFQEQDL--PALLAQHTAPLLLVLDGVTDPHNLGACLRCAD 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A + II + S +A + K ASGA E +P I+++NL L+ + +G + + Sbjct: 119 AAGVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIE 178 Query: 216 SKKPLEQ-EIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + Q K IAL++GAEG G+R T++ + + M G + +LNVS A V L Sbjct: 179 ADSHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFL 238 Query: 274 Y 274 + Sbjct: 239 F 239 >gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] Length = 246 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 9/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVND 143 P VP + + ++ HQG+ +E PL L + + + LL++LDH++D Sbjct: 48 LPCSYVPVEKLQRL--TRGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSD 105 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAI+R+A GII K+ S S + K+++GA+ +IP ++ NL D + + Sbjct: 106 VRNIGAIIRTAECTGVSGIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQ 165 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + IG + + L Q + +A+++GAE G+ + A L + G I +L Sbjct: 166 GSGIKVIGATEKASSLLYQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSL 225 Query: 264 NVSNAAAVALY 274 NVS A LY Sbjct: 226 NVSVACGAFLY 236 >gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi JD1] Length = 246 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168] gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168] Length = 244 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 77/141 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD V DPHN+GAI+R+A A G+I ++ S + V+ K+++GA+ H+P ++S Sbjct: 95 FIIILDQVQDPHNLGAIIRTAYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVS 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + G G +P + L++G EGKG+R +E + + Sbjct: 155 NINYTIADLKDMGLWITGTDVRGTRPYYSADYKGPVGLVIGNEGKGMRRLVKENCDFVVN 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S AA V ++ Sbjct: 215 IPMSGELGSLNASVAAGVVIF 235 >gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13] Length = 249 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 13/244 (5%) Query: 42 HTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 T + + + G + V AL P I+ + T +L R+ A VK V Q Sbjct: 2 QTQEKDEALIIGRNPVLEALKAEEPLDTIY-MNGTGGSLGRICTMAK-SRGIVVKNVTEQ 59 Query: 100 TIDKIVGKEAVHQGL----ALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILR 152 + ++ A HQG+ A + L LD R + L+V D + DPHN+GAI+R Sbjct: 60 KLSQMA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A DG+I KR S S +A + K+++GA +P R++NL AL + G G Sbjct: 119 TAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANLAAALDTLKEAGVWIYGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + S ++ +AL++G+EG G+ +E + L M G I +LN S AA + Sbjct: 179 DA-SGDAYDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIF 237 Query: 273 LYIT 276 +Y T Sbjct: 238 MYET 241 >gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter fumaroxidans MPOB] Length = 252 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 17/249 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100 H+S P +L++ G + V L ++ +++ +AR D L ++ + P+ Sbjct: 5 HSSTPPHLWVSGFNPVREVLLTGRVEVLEMI-----VARSDQRVRELVELGALRGIAPRQ 59 Query: 101 -----IDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150 + +VG A HQG+AL L+A+ + L++LD + DP N+GA+ Sbjct: 60 ETRDGLSALVG-HAHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAM 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA G+I + S ++ + + A+GA ++P I+++NL AL+++ G Sbjct: 119 LRSACFLGARGVIVPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL + + + + + L++G E KGLRP +M + G +++LN + + A Sbjct: 179 GLDAQAAQTIYDADLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGA 238 Query: 271 VALYITQNH 279 +AL Q Sbjct: 239 IALAEVQRR 247 >gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2] Length = 311 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 10/176 (5%) Query: 108 EAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A+HQG+AL+ P LL D + LL+ LD + DP N+GAI+RSA AF Sbjct: 129 DAIHQGIALQIPPYDYAEPRDLLEVAADRA-EAPLLVALDGITDPRNLGAIVRSAAAFGG 187 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I +R + S +A K+++GA I ++ NL A+ ++ +GL D + Sbjct: 188 HGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQNVFVVGLDMDGEVE 247 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L E D + +++G+EGKG+ + + + + ++LN AAAV+LY Sbjct: 248 LPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIAAAVSLY 303 >gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] Length = 299 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 6/189 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPH 145 PV+ V +D + HQG+ +E++P TL V +S L+++LDHV D Sbjct: 94 VPVERVSRARLDSLS-SHGAHQGIIVESSPFEYATLGDVISSAGSGDALVVLLDHVTDEG 152 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA GI+ S S K+++GA+ H+P R+ NL AL ++ Sbjct: 153 NFGAIVRSAEVVGASGIVIANARSASVGVGAYKTSAGAVMHLPIARVPNLATALDRLKEA 212 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF + +++ ++ L++G+EG G+ +E L G I++LNV Sbjct: 213 GFWVAAATEHAEQDAWSAPLGGRLCLVMGSEGGGISRLVRERCDFGCRLPQRGRIESLNV 272 Query: 266 SNAAAVALY 274 + AA V Y Sbjct: 273 AQAATVLCY 281 >gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] Length = 276 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 25/278 (8%) Query: 24 RRNHRDY--KKMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 ++N +D ++++ N SR+TS+ E+L + G + V L + R + Q+L A Sbjct: 5 KKNFKDNSNRRIEKDNNFSRNTSEKSFREDL-IEGRNAVIEVLKS-ERTVEQILV---AN 59 Query: 79 ARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129 + NL +K V + +D++ + HQG+ + P +D + Sbjct: 60 GDVSGSINLILALAKEKKVVIKQVDRKKLDQL-SQTGAHQGVIAQITPYKYCDVDDIISY 118 Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +++LD + DPHN G+I+R+A GII KR + + + K++ GA+E Sbjct: 119 AEEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIE 178 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ +I+N+ +A+ K+ G G + + +ALI+G+EGKG+ T+ Sbjct: 179 HMKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKLTK 238 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 + + M G I +LN S A + +Y I + F K Sbjct: 239 NKCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFKK 276 >gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] Length = 246 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] Length = 246 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 322 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 12/194 (6%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148 VP +D++V +HQG+ L+ P + LD S LL+ LD++ D N+G Sbjct: 128 VPRTDLDRMV-SNGMHQGVGLQVPPYQYTDPADLLDMAMGSSEPALLVALDNITDTRNLG 186 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NL L G Q Sbjct: 187 AVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAAARLPVARATNLNRTLLDWAKAGVQ 246 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL ++ L+ +++G+EGKGL +E S+ + + +++LN S A Sbjct: 247 LVGLDAEGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASEVESLNASVA 306 Query: 269 AAVALYITQNHFAK 282 A V L + FA+ Sbjct: 307 AGVVL----SEFAR 316 >gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC 35896] Length = 242 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ T T++ + + L++LD + DPHN+GA++RSA DG Sbjct: 62 AAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVDG 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + +A + K+++GA+ ++ R++N++ ++ + + GL D + + Sbjct: 122 VILPKRRSATVNATVEKTSAGAVSYMKVARVTNISQTIELLKKENYWVYGLDMDGTEYTQ 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + IA+++G EGKG+ ++ + + M G I++LN S A +V L+ Sbjct: 182 NDWSGN-IAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILF 233 >gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] Length = 246 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] Length = 248 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%) Query: 93 VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139 V+ VP + +D GK HQG+ + AP + +DA S L+++LD Sbjct: 50 VEMVPRKVLD---GKSDRGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 H+ D N+GA+ RSA A GI+ + S A KS++GA+ H+P ++SNL + Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ GF G + +K + + KIAL++G E +G+ E + L + G Sbjct: 167 SRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226 Query: 260 IKALNVSNAAAVALY 274 + +LNV+ AA +Y Sbjct: 227 VASLNVAQAATACMY 241 >gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii] gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii] Length = 244 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 24/244 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLL----------ATKNALARLDW--DANLPHPFPVKTVPP 98 LYG+ V AAL R ++ L + ALA + W A V+T Sbjct: 3 LYGIGPVRAALQARRRDLYVLYVQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-------LDHVNDPHNIGAIL 151 ++ +V HQG+ L+ +PL + A+ ++ LD V DP N GAIL Sbjct: 63 HALNVLVDNRP-HQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RS+ F G++ + S S V++K+++GALE I + N+ L+ G++ IG Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181 Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S+ + + ++ KN L+LG EG G+RP + PG + +LNVS AA Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR---PGTVDSLNVSVAAG 238 Query: 271 VALY 274 V L+ Sbjct: 239 VLLH 242 >gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 138/277 (49%), Gaps = 30/277 (10%) Query: 30 YKKMQSFNQK--------SRHTSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKN 76 + K +SF ++ +R + PE+ L+G + V AL + R+I ++L K Sbjct: 24 FNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGRNAVIEALKS-EREIDKILIQKG 82 Query: 77 ----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLD 127 ++ ++ A ++ V +D++ G+E HQG+ A E + D Sbjct: 83 EKEGSVIKIISAAKAKGIVTLE-VEKSKLDELTGREK-HQGVVAYVAAHEYVSVEEILED 140 Query: 128 AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A + +++L+++ DPHN+GAI+R+A GII KR + + +AK+++GALE Sbjct: 141 AAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVGLTGTVAKASAGALE 200 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H ++SN+ ++ + G D K E+ + I +++G+EG+G+ T+ Sbjct: 201 HTKVAKVSNIAQTIKDLQQKGLWIACADMDGKVLFEENL-TGPIGIVVGSEGEGISKLTK 259 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 +T + + M G + +LN S AA++ +Y + Q +F Sbjct: 260 QTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRNF 296 >gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a] gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40] Length = 246 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 84/141 (59%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ + ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + ++GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] Length = 244 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 9/233 (3%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++YG+ + A+ + K++ L + L H VP + +DKI Sbjct: 6 YIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDKI-SS 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ +L+ V + ++ ++LD V D N GAI+R+A Sbjct: 65 HGNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECTGVSA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + S + K+++GA+ +IP ++S++ DA+ M ++G TIG + S K + Sbjct: 125 IIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKSTKLVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N IAL++G+E +G+ P T + L M G I +LNVS A LY Sbjct: 185 DIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILY 237 >gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 21/243 (8%) Query: 47 ENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI- 104 +++ + H V A L +NP+ I + K RL+ L F + Q KI Sbjct: 3 KSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLN---TLTSEFNNFGISVQRCTKIQ 59 Query: 105 ---VGKEAVHQGLALETAPLLSPTL----------DAVRNSQLLMVLDHVNDPHNIGAIL 151 + HQG+A E +L PTL + N+ +++LD + DP N+GA L Sbjct: 60 LDKLSNHQTHQGVAAE---ILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A ++ K S ++++ K+++GAL + +++NL+ ++ + IG Sbjct: 117 RSANAAGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIG 176 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L + Q A+I+GAEG GLR T+++ +A + M G +++LNVS A V Sbjct: 177 LDGSVNISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGV 236 Query: 272 ALY 274 L+ Sbjct: 237 TLF 239 >gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] Length = 248 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%) Query: 93 VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139 V+ VP + +D GK HQG+ + AP + +DA S L+++LD Sbjct: 50 VEMVPRKVLD---GKSDRGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 H+ D N+GA+ RSA A GI+ + S A KS++GA+ H+P ++SNL + Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ GF G + +K + + KIAL++G E +G+ E + L + G Sbjct: 167 SRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226 Query: 260 IKALNVSNAAAVALY 274 + +LNV+ AA +Y Sbjct: 227 VASLNVAQAATACMY 241 >gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 239 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 79/140 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N GAI+R+A AF DGII K + S + ++ K++ GA+ +I I +S Sbjct: 91 LILMLDEIEDPRNFGAIIRTANAFGVDGIIYKKYHQASINDLVIKTSMGAINYIHMIEVS 150 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL++A++ + + GF S + E+ +K I+G E KG+ P + A Sbjct: 151 NLSNAIKNLQNEGFWVYATSLLKSQSYEKVDYANKSVFIVGNESKGVSPLILKNADQSVR 210 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G +++LNV A + L Sbjct: 211 IDMFGDVQSLNVGVATGIIL 230 >gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] Length = 519 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 21/240 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVKTVPPQTI 101 +YG H V AAL +R + ++ T RL + DA V VP + I Sbjct: 243 LIYGRHAVLAALQG-NRTLNRIWVT----PRLRYESTFLELIDAAKAGGAVVDEVPVERI 297 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++ AVHQG+A + AP L A +++V D + DPHN+GAI+R+A Sbjct: 298 RQLT-DGAVHQGIAAQVAPYPYQELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTA 356 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ +R + +A +AK A+GALE P R+ NL AL+++ GF G + Sbjct: 357 EALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNRALEELKDAGFWIYGAAG 416 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K+ + + + + L++G+E +GL T+E + + + G +LN S AA + LY Sbjct: 417 EAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLY 476 >gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 19/257 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW---DA 85 YKK + K T E+L + G + V AL + + I Q+ LA N ++ A Sbjct: 5 YKKSTNLTDK---TEFREDL-IEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAKA 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVL 138 H VK V + +DKI + HQG+ + P + L+ R + ++VL Sbjct: 61 KEKH-IVVKQVDRKKLDKI-SQTGAHQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN GAI+R+A GII KR + + V+ KS+ GA E++ +++NL Sbjct: 119 DEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTT 178 Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++K+ G G S + + K ALI+G+EG+G+ T+E + + M Sbjct: 179 IEKLKKDGIWVYGADMSGENYCFDVDFKGPA-ALIIGSEGRGIAKLTKEKCDVLVKIPMV 237 Query: 258 GIIKALNVSNAAAVALY 274 G + +LN S A + +Y Sbjct: 238 GRVSSLNASVAGGILMY 254 >gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 244 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 7/173 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG AP+ L +D V S L ++LD ++D N GAI+R+A DGII Sbjct: 67 HQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVDGII 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K+ S + K+++GA+ ++P ++ ++ DA+ + + G +T+ + ++ + Sbjct: 127 VQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNIYDI 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY T Sbjct: 187 SLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYET 239 >gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides DSM 266] Length = 252 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL----LSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + + LD RN+ LL++L + DPHNIGAI+R+A A + D ++ Sbjct: 76 HQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAIIRTAEAVAADAVLLI 135 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +A + K+++GAL H+ ++ +L L+ +H F I D++ Sbjct: 136 EGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLIIAADMDAEINYTDIDL 195 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A++LGAEG GL P+ + + M G +++LNVS A V LY Sbjct: 196 TKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAGVLLY 244 >gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 225 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 15/231 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + ++G +TV AL I +LL K +D + + +T P+ + GKE Sbjct: 1 MIIHGRNTVEEALK---LGIVKLLFVK---VNSTFDTS-KYDVETRTYGPKEFEHYYGKE 53 Query: 109 AVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 A QG+A E +L D + +++LD + DP N GAI+R+A F I+ Sbjct: 54 A--QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILV 111 Query: 165 T-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R +P SAV K++SG + + + N AL+K+ G+ + K L+ Sbjct: 112 GLDRQAPITSAV-CKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDV 170 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K +I+G+EGKG+RP +TA + M G I +LNVS +AAV LY Sbjct: 171 EFAEKSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILY 221 >gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 12/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A +R NH K+ QS +++ E + G + V L P+ ++ L ++ A Sbjct: 41 AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSE-AD 99 Query: 79 ARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNS 132 RL + + VP +D++ +HQG+AL+ P ++A S Sbjct: 100 ERLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGS 158 Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVA 218 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L G + IGL + L+ D I +++G+EGKGL ++ Sbjct: 219 RATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDE 278 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN S AA V L Sbjct: 279 VVSIPMAGNAESLNASVAAGVVL 301 >gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 277 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPH 145 +K V + +D + E HQG+ + P S D ++ +++LD V DPH Sbjct: 82 IKEVDKRKLDSMCDGET-HQGVIAKVTPFKYSEVSDIFELAEQKGEAPFIVILDEVEDPH 140 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A F GII KR S S +A + KS+ GA+EH+ +++N+ ++++ Sbjct: 141 NLGSIARTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEHVKVAKVNNINSTIEELKEK 200 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G +++ + + AL++G EG+G+ T + + + M G I +LN Sbjct: 201 GVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRGMSKLTVQKCDKLIKIPMVGKINSLNA 260 Query: 266 SNAAAVALY 274 S A + +Y Sbjct: 261 SVAGGIMMY 269 >gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ +P+ + +L + L+++LD++ DPHN GAI+RSA DG+I Sbjct: 67 HQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADGVI 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R S S + KS++GA+EHI +SN+ + + G +GL + + + + Sbjct: 127 MQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGENYYDMD 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++GAEGKGL +E ++ + + +LN S AA + L+ Sbjct: 187 Y-DMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLF 236 >gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] Length = 245 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ A+E L ++ + LL++ D V DPHN+GAI+R+A ++ Sbjct: 66 HQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIP 125 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 KR++ +A +AK+++GA+E I +++ N+T ++++ GF +G + + L + Sbjct: 126 KRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADL 185 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 186 TIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMY 234 >gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVND 143 PV+ V P I++ + HQG+ APL L LD + LL++ + D Sbjct: 93 VPVEEVDPVEIERRAQTD-THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQD 151 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA+ R+A A G + S A + KS++GAL H+P ++NL +++++ Sbjct: 152 PHNLGAVFRTAEAAGAHGAVVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLK 211 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + +P ++ +A++LG+EG+G+ P + + M G + +L Sbjct: 212 ERGVWVVAADPEGAEPYDRWDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSL 271 Query: 264 NVSNAAAVALY 274 NVS AA V L+ Sbjct: 272 NVSVAAGVLLF 282 >gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] Length = 246 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 13/240 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTI 101 Q N ++G+ + A+N+ S K+F + L + D L + VPP+ + Sbjct: 2 QNNNTQIFGIRAIIEAINSGSTIDKVFIQKGLRGELFN-ELDHLLRSNAISTSFVPPEKL 60 Query: 102 DKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSA 154 +++ K HQG+ +P L + L+ + + ++ ++LD ++D N GAI+R+A Sbjct: 61 NRLTKKN--HQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 DGII K+ +A K+++GA+ +P ++ ++ DA+ + S G Q + + Sbjct: 119 ECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATE 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L +A+++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 179 KTENTLYDVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLY 238 >gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] Length = 324 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%) Query: 109 AVHQGLALETAPL--LSPT--LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ L P P L+A S L++ LD + DP N+GA+LRSA AF G Sbjct: 144 AVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRNLGAVLRSAGAFGAHG 203 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 ++ R S +A K+++GA +P R +NL ALQ+ + G +GL D + Sbjct: 204 VLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAGCFVVGLDGDGPGMVG 263 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + L++G+EGKGL +ET +A + + +++LN S AA++ALY Sbjct: 264 DLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNASVAASIALY 317 >gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae 7-10-1-b] Length = 248 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 14/200 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMVLDHV 141 V TVP +T+D + HQG+ ET P + + L+++LDH+ Sbjct: 50 VTTVPRKTLDD-KSERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHL 108 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+GAI RSA A G++ + S A KS++GA+ H+P ++ NL + + Sbjct: 109 TDAGNLGAIARSAEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMAR 168 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G S + + + KIAL++G E +GL +E+ + L G + Sbjct: 169 LKERGFWVAGASEQTDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVA 228 Query: 262 ALNVSNAAAVALY--ITQNH 279 +LNV+ A+ +Y + QN+ Sbjct: 229 SLNVAQASTACMYEWLRQNY 248 >gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] Length = 243 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 15/238 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103 ENL ++G+ V A+ ++I +L K A +L D L H + VP + +++ Sbjct: 3 ENL-VFGIRPVVEAIE-AGKQIEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNR 60 Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ + +P+ L+ L+ V + L+++ D V D N GAI RSA Sbjct: 61 LT--RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECA 118 Query: 158 SCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K +P S + +S++GAL IP R+ ++ + L+ + + G+Q +G + S Sbjct: 119 GAHGLIVPLKNAAPVNSEAI-RSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKS 177 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K L AL++GAE G+ + + + M G I++LNVS AAAV L+ Sbjct: 178 RKLLYDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLF 235 >gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 519 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 21/240 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVKTVPPQTI 101 +YG H V AAL +R + ++ T RL + DA V VP + I Sbjct: 243 LIYGRHAVLAALQG-NRTLNRIWVT----PRLRYESTFLELIDAAKAGGAVVDEVPVERI 297 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++ AVHQG+A + AP L A +++V D + DPHN+GAI+R+A Sbjct: 298 RQLT-DGAVHQGIAAQVAPYPYQELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTA 356 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ +R + +A +AK A+GALE P R+ NL AL+++ GF G + Sbjct: 357 GALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNPALEELKDAGFWIYGAAG 416 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K+ + + + + L++G+E +GL T+E + + + G +LN S AA + LY Sbjct: 417 EAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLY 476 >gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1] gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1] Length = 244 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 14/201 (6%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAV--RNSQ 133 L +K + + KI+G H+G AL+ L L L +N+ Sbjct: 36 LARQHNIKIIKINDLTKILGNNN-HRGFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNI 94 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N GAILR+A F+ D +IT +R S ++A + +++SGA +++ + + Sbjct: 95 LILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNATVLRTSSGASQYVNKLTVP 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + GF + +I ++KIALI+G EGKG+ + + + Sbjct: 155 NINNVIRYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235 >gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] Length = 258 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103 E F++G V A++ +++ ++L K N L + + PV VP +++ Sbjct: 16 EKDFIFGTRAVMEAIH-AGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLNR 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + +LD +V S L+++LD + D N GAI RSA Sbjct: 75 VTRKN--HQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAEC 132 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S ++ K+++GAL +P +R+ NL + + G + ++ S Sbjct: 133 AGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEKS 192 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + +A+I+G+E G+ + A ++ M G I++LNVS +A VA+Y Sbjct: 193 DKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIY 250 >gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus flavefaciens FD-1] Length = 254 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 8/173 (4%) Query: 109 AVHQGLALETAP----LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A A + L RN +++ D + DPHN+GAI+R+A DG Sbjct: 73 ASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGAIIRTAETSGADG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S S +A + K+++GA ++P R+SNL + + G G + + + Sbjct: 133 IIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWIYGTDASGTEYTQ 192 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G+EG G+ Q+ M L M G I +LN S AA + +Y Sbjct: 193 TDFTG-SCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMY 244 >gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] Length = 244 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 14/201 (6%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAVR--NSQ 133 L ++ + + KI+G H+G AL+ L L L+ + N+ Sbjct: 36 LAKEHKIQIIKVNDLAKIIGNND-HRGFALKLKTLKSNNTKKQDKNLEEFLEEFQHQNNV 94 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR++ F+ D +IT++R S ++A + +++SGA +++ + + Sbjct: 95 FILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATILRTSSGASQYVNKLVVP 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + GF K I + KIALI+G EGKG+ +E + + Sbjct: 155 NINNVIKYLKKNGFWIYASDIKGKAINTTPINDTKIALIMGNEGKGIHKLIKENSDFLVR 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235 >gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 292 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR + L+VL+ + D N+GAI R A A DGII + R + K + GA+ IP Sbjct: 126 VRPPRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAIP 185 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG-----LRP 242 Y R+ N D L+++ + GFQT+ L+ D P++ +++AL+LG+EG G LR Sbjct: 186 YARMGNWYDGLEEIRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSEGDGLSSRWLRE 245 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M+ M + +LNV AAA+A + Sbjct: 246 ADEQVCIPMSPTAMASGVDSLNVVAAAAIACH 277 >gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] Length = 246 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 16/201 (7%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLAL------------ETAPL--LSPTLDAVRNSQ 133 ++ + +DKI+ K H+G AL +T L T N+ Sbjct: 39 AQNIKIRRINTNELDKIL-KNKDHRGFALKLKLEKNKNVKTQTKDFEHLLETFKKKENA- 96 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D +ITT++ S +++ + +++SGA +++ I ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKITVA 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + GF + + +I + KIALILG EG+G+ +E + + Sbjct: 157 NINNTINFLKKNGFWIYAGDVKGQDINKIKINDRKIALILGNEGRGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] Length = 272 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 16/263 (6%) Query: 25 RNHRDYKKMQS----FNQKSRHTS--QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA 77 + H++ K Q+ F+QK++ + + E+LF+ G ++V ALN N +KIF + + N Sbjct: 6 KTHKNSNKTQTVKKQFSQKNKRKTLKRSEDLFICGRNSVKEALNENQIKKIF--IKSGNN 63 Query: 78 LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN 131 RL + PV+ + +DK+ +QG+ P L L + Sbjct: 64 DQRLKDIVKIAQNKNIPVEIEEQEILDKM-SDGVRNQGIVASMKPFEYSDLEEVLSKAKE 122 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 123 DPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVCE 182 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ + Sbjct: 183 IGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFL 242 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS AAA+ +Y Sbjct: 243 VRIPMKGKVSSLNVSVAAALLIY 265 >gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] Length = 263 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%) Query: 91 FPVKTVP-PQTIDKIVGKEAVHQGLALETAPL--LSPT--LDAVR-------NSQLLMVL 138 F V+ VP P+ + HQG+ ET P SP+ LD + L++VL Sbjct: 46 FDVEVVPVPRKELDAKSERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVL 105 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DH+ D N+GAI RSA GII + S S +A KS++G++ H+ +++NL Sbjct: 106 DHITDAGNLGAIARSAEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAV 165 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+++ GF G S + + + KIAL++G EG G+ Q+ + L G Sbjct: 166 LERLKKNGFWVAGASEQAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEG 225 Query: 259 IIKALNVSNAAAVALY 274 + +LNV+ A+ +Y Sbjct: 226 KVGSLNVAQASTAVMY 241 >gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter propionicigenes WB4] gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter propionicigenes WB4] Length = 255 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 13/244 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVP 97 ++ +PE ++G+ V A+ ++I ++L ++ L+R + A PV+ VP Sbjct: 5 KNKRRPEKDMIFGIRAVIEAIQ-AGKEIDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + ++K+ K HQG +P+ + P + ++VLD V D N GAI Sbjct: 64 LEKLNKMTVKN--HQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+ D I+ + S + K+++GAL IP R NL +AL+ + S G + + Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + K + + IA+I+GAE +G+ P M + M G I +LNVS AA Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241 Query: 271 VALY 274 V +Y Sbjct: 242 VLIY 245 >gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] Length = 366 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154 +D++ G A HQGLAL P L R S LL+ LD V DP N+GA++RSA Sbjct: 177 LDRLCGV-APHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVVRSA 235 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R + +A K+++GA +P R +NL L+ G +GL++ Sbjct: 236 AAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVGLAA 295 Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ D I L++G+EG+GL E + + M G +++LN Sbjct: 296 NADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346 >gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 239 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 79/144 (54%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LD + DP N GAI+R+A AF D II K + S + ++ K++ GA+ +I Sbjct: 87 KKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++NL++ ++ + GF S +P E+ +K I+G E KG+ P + A Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNAD 206 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + M G +++LNV A + L Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230 >gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 98/168 (58%), Gaps = 4/168 (2%) Query: 111 HQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQGL AP L+ L+ + LL++LD + DPHN+GA LRSA A + ++ K Sbjct: 67 HQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGANAVVLPK 126 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 ++ +A + K+A+GA +P + ++NL ++ + +G+ GL+ ++ + L + Sbjct: 127 DHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQDLYEADLR 186 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LG+E KGLR +E + H+ M G +++LNVS A A+AL+ Sbjct: 187 GPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALF 234 >gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 321 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153 +D+I G A+HQGL L+ P + D +R ++ LL+ LD V DP N+GA++RS Sbjct: 130 LDRITGG-AMHQGLGLQVPPYEYAEPRDLLRAAKESGRPPLLVALDGVTDPRNLGAVVRS 188 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ +R S S +AV ++++G +P +NLT L++ G IGL Sbjct: 189 AAAFGAHGVVLPQRRSASMTAVAWRTSAGTAARLPIAVATNLTRQLREWAEAGLMVIGLD 248 Query: 214 SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D ++ + +++G+EG+GL +ET + M +++LN S AA V Sbjct: 249 ADGDVDVDGLDLATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVV 308 Query: 273 L 273 L Sbjct: 309 L 309 >gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a] Length = 254 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 24/239 (10%) Query: 50 FLYGVHTVSAAL--NNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTID 102 +YG + V+ AL P +F L + + ALA+ VK + Sbjct: 20 IIYGKNAVTEALKAEKPIDTVFVLKSAQGMNQIIALAK-------KQGIVVKDAGEDKLK 72 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155 + G + H G+A + + T+ D + N++ +++ D + DPHN+GAI+R+A Sbjct: 73 ALCGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAE 130 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I KR S + + + K+++GA I R+SNL D ++ + G G +D Sbjct: 131 AAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEAD 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 191 G-TPIDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMY 248 >gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1, mitochondrial-like [Pongo abelii] Length = 353 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 38/257 (14%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL + L R+ ++P P + Q Sbjct: 51 LLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106 Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL P +A S QL +VLD + DPHN GA+LRS Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210 A D +IT++R S + V++KS++GA+E + +LT LQ G+ T+ Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257 G S ++ P EI + L+LG EG GL + Q + T + +P Sbjct: 226 GCPS-AEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284 Query: 258 GIIKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 285 PGLESLNVSVAAGILLH 301 >gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] Length = 254 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 24/239 (10%) Query: 50 FLYGVHTVSAAL--NNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTID 102 +YG + V+ AL P +F L + ALA+ VK + Sbjct: 20 IIYGKNAVTEALKAEKPIDTVFVLKGAQGMNQIIALAK-------KQGIVVKDAGEDKLK 72 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155 + G + H G+A + + T+ D + N++ +++ D + DPHN+GAI+R+A Sbjct: 73 ALCGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAE 130 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I KR S + + + K+++GA I R+SNL D ++ + G G +D Sbjct: 131 AAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEAD 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 191 G-TPIDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMY 248 >gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 251 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD LL+VL++V DPHN+GA LRSA A +I +R + + V ++A GA E Sbjct: 93 LDGKPAKPLLLVLENVTDPHNLGACLRSADAAGVQAVIVPRRNAAGLTPVACRTAVGAAE 152 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKT 244 + Y I NL L ++ G +G + + + + L + +A+++GAEG GL+ T Sbjct: 153 SLAYYEIGNLASLLDQLRDRGVWVVGTALEERSESLFTFQAPESLAVVMGAEGSGLKRLT 212 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + M G +++LNVS A V L+ Sbjct: 213 RDKCDQLLEIPMAGEVQSLNVSVATGVMLF 242 >gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] Length = 254 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 15/246 (6%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKT 95 R + +YGV+ V AAL KI K ++R+ N + V+T Sbjct: 3 RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMN-NYGIKVQT 61 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 T+D+I VHQG+ +E L LD + N +VLD V DP N+G Sbjct: 62 AMRHTLDEIT-DNGVHQGVVIEMVATPPKNEGDLEELLDTLENP-FFLVLDGVTDPRNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A +RSA A G+I K S S S K+ASGA + +P ++NL L+ + + Sbjct: 120 AAMRSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVR 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG+ ++ + +A+++G+E G+R T+E + + M +++LNVS A Sbjct: 180 VIGMDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVA 239 Query: 269 AAVALY 274 A +AL+ Sbjct: 240 AGIALF 245 >gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] Length = 249 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVND 143 PV+TVP +D++ K AVHQG A + D A RN L++LD + D Sbjct: 49 IPVETVPRARLDQM-SKGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQD 107 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 +N+G++LR+A A G+I + + +A + K+++GA EHI R +NLT + + Sbjct: 108 VNNLGSLLRTAEAAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLK 167 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +GL+ + Q +A+++G EGKG+ +E + L M G I +L Sbjct: 168 QQNIWIVGLAGEGDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSL 227 Query: 264 NVSNAAAVALY 274 N + A ++ LY Sbjct: 228 NAAVAGSITLY 238 >gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] Length = 326 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 11/182 (6%) Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G A+HQG+AL P LLS D+ R + L++ +D V DP N+GAI+R Sbjct: 132 LDRLTGN-AIHQGVALVVPPYQYAHPEDLLSRARDSGR-AALIVAVDGVTDPRNLGAIVR 189 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ +R S +A ++++G + R +NL L+ + G GL Sbjct: 190 SAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAAQGLMIAGL 249 Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +D + E+ + L++G+EG+GL T+ + M +++LN S AA V Sbjct: 250 DADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESLNASVAAGV 309 Query: 272 AL 273 L Sbjct: 310 VL 311 >gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 5/184 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F +K +PP K+ K A HQG+ E + N + ++VL V D NIGAI Sbjct: 42 FEIKRIPPDAAGKMC-KNASHQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAI 100 Query: 151 LRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +R+A A DG+I S P E+ V ++++GAL +P+ N+ D L + GF + Sbjct: 101 IRTAYALGVDGVIACGVKSLPIEAIV--RTSTGALFDMPFAIEQNVLDVLNDLKMSGFTS 158 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + +IK + AL LG+EG+GL + + + M +LNVS A Sbjct: 159 YGADMGATDIRDVKIKQKR-ALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAG 217 Query: 270 AVAL 273 A+ + Sbjct: 218 AILM 221 >gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] Length = 306 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 8/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAV------RNSQLLMVLDHVNDP 144 PV + P + + V E HQG+ APL P LD + R LL++ + DP Sbjct: 87 PVTEIDPAELQRRVQTEG-HQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDP 145 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA+ RSA A G + S KS++GAL H+ +++NL +++ Sbjct: 146 HNLGAVFRSAEAAGAHGAVVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKE 205 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + +P +Q AL+LG+EG+G+ P + M G + +LN Sbjct: 206 QGVWVVAADPEGAQPYDQWDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLN 265 Query: 265 VSNAAAVALY 274 VS AA + L+ Sbjct: 266 VSVAAGILLF 275 >gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 244 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 117/238 (49%), Gaps = 21/238 (8%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPFPVKTVPPQTIDK 103 ++G+ + A+N ++I ++ K+A L D N+ + VP + +++ Sbjct: 7 IFGIRAIIEAIN-AKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSY----VPVEKLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + HQG AP+ +L+ + L ++LD ++D N GAI+R+A Sbjct: 62 LTPNN--HQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII K+ S + K+++GA+ ++P ++ ++ DA+ + G +T+ + + Sbjct: 120 TGVDGIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKT 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N+ +A+I+G+E +G+ P + A L M G I++LNVS A LY Sbjct: 180 ENHIYDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLY 237 >gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] Length = 281 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 8/193 (4%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHV 141 H V+ + +D + G E HQG+ + A + L A + + L++LD + Sbjct: 81 HGIIVQFADKRKLDSMAG-EVAHQGVIAQAAAYRYYEVEEILAAAKAKGETPFLLLLDEI 139 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+G+ILR+A G+I KR S +A ++K ++GA E++P R++NL ++ Sbjct: 140 EDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGAAEYVPVARVTNLAQTIET 199 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G G +++ + + + + L++G E KG+ +E + L M G + Sbjct: 200 LKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRLIREKCDFLIKLPMAGQLN 259 Query: 262 ALNVSNAAAVALY 274 +LN S AA V +Y Sbjct: 260 SLNASVAAGVLMY 272 >gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] Length = 310 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 20/267 (7%) Query: 33 MQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 M+ NQ R PE +YG + V+ L + S L+A A A + Sbjct: 42 MEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTA 101 Query: 87 LPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMV 137 L VK V P + + G E+ HQG+A + + T+D + + L++ Sbjct: 102 LAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAAAKDKGEAPFLVL 160 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + Sbjct: 161 SDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGE 220 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM- 256 ++++ G D L + IAL+LG+EG G+ ++ + L M Sbjct: 221 TIRRLKEQGVFVYCADMDGVS-LRRNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMA 279 Query: 257 -PGI-IKALNVSNAAAVALYITQNHFA 281 PG + + NVS AA + LY Q+ A Sbjct: 280 APGTGVDSYNVSVAAGIILYEIQSQRA 306 >gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] Length = 224 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R + ++ LD V DP N+GA+LR+A F C G++ KR + + + + + GA H+ Sbjct: 73 ALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKRRAAQVTETVVEVSQGAAFHL 132 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R+ NL ++++K+ +GF +G + K L +AL++G E +G+ ++ Sbjct: 133 KISRVENLANSIKKIKKYGFLVVG-AEIGGKDLRSVKFTPPLALVVGGEDRGISQPVKKM 191 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LN+S AA + LY + H Sbjct: 192 CDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224 >gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 257 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Query: 122 LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L+ L A RNS LL++L + DPHN+GAI+R+A A + D +I + SA + K++ Sbjct: 96 LNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADAVIMIEGKGAPISATVHKAS 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GAL H+ ++ ++ AL + GF + +++ L++GAEG GL Sbjct: 156 AGALSHMRVCKVKSVVKALDLLRERGFSIVAADMEAEHNHTDIDWKRPTVLVMGAEGSGL 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T+ + + M G +++LNVS AA V LY Sbjct: 216 GSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLY 249 >gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] Length = 233 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG L +D ++ N + +++LDH+ DPHN GAILR+A A II K Sbjct: 60 HQGYLLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIIIPKDR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227 S ++ + K +SG + I++SN+ ++ K+ SWGF L + P + N+ Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKVEYNE 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G E KG+ T ++ G ++++NVS A + L+ Sbjct: 180 HCALVVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLF 226 >gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio nitroreducens DSM 19672] gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 2/169 (1%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 GK+A QG A E + +NS + +LDH+ DPHN GAI+R+ F I Sbjct: 56 GKDA--QGYAFEFEVEYCDLDELGQNSGNICILDHIQDPHNFGAIVRAGHCFGVRNFIIA 113 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + V+ KS++GA + + + N+ +++++ G+ + + L Sbjct: 114 KDNQSPVTPVVVKSSAGAAIYSRFYEVVNINRSIEELKEKGYWIYAADMNGETKLGDIRP 173 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N+ +I+G+EG+G+R + A + + M G+I +LN S +AA+A Y Sbjct: 174 NEPYVVIIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFY 222 >gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] Length = 274 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R ++VLD + DPHN GAI+RSA FS D ++ +R S + ++K ++GA + Sbjct: 121 ASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWV 180 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +NL ++++ GF G + +PL DK LI+G+EG G+ + + Sbjct: 181 PLLYTANLVRTVEELKRNGFWVFGADAQG-EPLPHTKFPDKTLLIMGSEGSGISRLLKTS 239 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 S + G + +LNVS AA + +Y Sbjct: 240 CDSFTAIPTSGKLDSLNVSVAAGILMY 266 >gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] Length = 264 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 13/237 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104 +++YG + V L RK+++LL + +A L+ +L ++ V +D++ Sbjct: 21 VYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERSILDRL 80 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ +E + +++ +R +LM LD + DP N G +LR+A F Sbjct: 81 T-HGANHQGVVIEASEFSYSSIEDLLASGELRGKDILM-LDSLQDPQNFGTLLRTAEVFG 138 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S + + ++SGA EH+ +++NL K+ +G+ +GL D Sbjct: 139 IGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEYDESS 198 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ I L++G+EG G+R ++ + + G I +LN + A ++ALY Sbjct: 199 SVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIALY 255 >gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis SJ95] Length = 240 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 4/167 (2%) Query: 111 HQGLALETA-PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG+ ++ LD + + L++LD + DPHN GAI+R++VA D II K Sbjct: 65 HQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDAIIIPKD 124 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + V+ K +SG + IP I+++NL++ ++ + G + K E + + Sbjct: 125 NAVEVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGKPYYEIDWQG- 183 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KI L+ G EG G+R + + + M +++LNVS ++ + L+ Sbjct: 184 KICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILF 230 >gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] Length = 302 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 12/241 (4%) Query: 38 QKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFP 92 Q++R Q P+ F+ G + AL L+A AL+RL D N Sbjct: 44 QRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSRLVDDLNAAG-VR 102 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD-AVRNSQLLMVLDHVNDPHNI 147 +K VP +D + HQG+ALE ++ LD A L++VLDHV D N Sbjct: 103 IKYVPRAQLDAL-SSHGAHQGIALEVGNFPYADVADILDRAGDGPALVVVLDHVTDDGNF 161 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA G+I + + + K+++GA+ H+P ++ N+ AL + + GF Sbjct: 162 GAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNIARALDDLKAAGF 221 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G S ++ ++AL++G+EG G+ E + L G+ ++LNV+ Sbjct: 222 WVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLPQRGMTESLNVAQ 281 Query: 268 A 268 A Sbjct: 282 A 282 >gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 249 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK 103 E+ ++G+H++ AL KI L + N L ++ A + V VP Q K Sbjct: 3 ESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAE-QNTIKVSYVPIQKFKK 61 Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG T+ + T++ V + L ++LD + D N+GAILR+A Sbjct: 62 Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S + K+++GA +IP ++++L DAL + S G + + ++ + Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N +AL++G EG+G++P + A L M G I++LNVS A V LY Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILY 237 >gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa DSM 4126] gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa DSM 4126] Length = 258 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 14/251 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP 90 M +FN++ + + +++G V A+ I+ +N L D Sbjct: 1 MTAFNKRPKLNDKD---YIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQK 57 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143 P VP + +++I K HQG+ + + +LD V N L+++LD V D Sbjct: 58 VPFTKVPIEKLNRITMKN--HQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTD 115 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N GAI RSA D I+ + S ++ K+++GAL +IP R ++L + ++ + Sbjct: 116 VRNFGAIARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + + K + +A+ILG+E G+ TA +A + M G I +L Sbjct: 176 KSGLQVVACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASL 235 Query: 264 NVSNAAAVALY 274 NVS + A+A++ Sbjct: 236 NVSVSCAIAVF 246 >gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] Length = 252 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 31/246 (12%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTIDK 103 +YG H + AL R +++ K+ ALA V+ V + +D Sbjct: 7 IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAE-------QKGCKVRNVSREELDD 59 Query: 104 IVGKEAVHQGLALETAPLLS-----PT---LDAV------RNSQ-LLMVLDHVNDPHNIG 148 + G H+G+ L + +S PT D V R Q L+++LD + DP N+G Sbjct: 60 LSGG-VDHRGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F+ D ++ +R S + AV+ K ++GA H+P + N+ A++ + GF Sbjct: 119 AILRSADQFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFW 178 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G +K K+A++LGAEG+G+ +E + + G I + NVS A Sbjct: 179 VYGADMGGGSAWNFSLKG-KVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVA 237 Query: 269 AAVALY 274 + LY Sbjct: 238 GGILLY 243 >gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 246 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD + DP N+G++LR+A A G+I +R + + +AK ++GA+E++P R++ Sbjct: 96 LLLVLDGIEDPQNLGSLLRTADAAGVHGVIIPERRAVGLTETVAKVSAGAVEYVPVARVT 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ L+ + G+ +G ++ + + +A+++G+EG+G+ ET Sbjct: 156 NIARTLEMLKERGYWVVGTHQEADELYYEARLTGPLAVVIGSEGRGMSRLVAETCDFTVR 215 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G + +LN + A A+ LY Sbjct: 216 LPMRGHVTSLNAAVAGAILLY 236 >gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] Length = 243 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 5/188 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146 PV+TV I+ ++ HQG+A E + DA+ + LL+VLD + DPHN Sbjct: 48 VPVETVALYEIEMML-PGVRHQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHN 106 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA LRSA A ++ + + V+ K A GA E +P R+SNL +++M G Sbjct: 107 LGACLRSAAAAGVHAVLIPNSRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQG 166 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +G + + + L +A+I+G EG+G+R +E + + M +++LNVS Sbjct: 167 IWVVGGAGGAAQSLYATDLTVPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVS 226 Query: 267 NAAAVALY 274 A V L+ Sbjct: 227 VACGVMLF 234 >gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1] Length = 246 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GA+ + P +++ Sbjct: 99 FLFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT ++++ G + D + ++K I L++G+EG+G+ +E +A Sbjct: 159 NLTATMKELKDKGMWFVCADMDGTCMYDLDLKG-PIGLVIGSEGEGVGRLVRENCDFVAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii Far04] gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii Far04] Length = 246 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D ++TT++ S ++ + +++SGA +++ I ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] Length = 248 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN+G I+R+A A G+I KR S ++V+AK+++GA+E++P +++ Sbjct: 99 FFIILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAKASAGAVEYVPVCKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++++ G D EQ++ +AL++G+EG G+ ++ + Sbjct: 159 NIANTIKQLKKEGLWIAAADMDGGVFYEQDLTG-PLALVIGSEGFGVSRLVKQNCDFVVK 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S A + LY Sbjct: 218 MPMIGNVSSLNASVAGGILLY 238 >gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT] gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT] Length = 265 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ P ++ + N ++VLD + DPHN+G+I+R+A GI+ Sbjct: 87 HQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIMRTAEICGVHGIV 146 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++N+ A+ ++ G G D + Q Sbjct: 147 IPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYGADMDGENYCFQT 206 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EGKG+ T++ + + M G I +LN S AA + +Y Sbjct: 207 NFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGIMMY 257 >gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr] gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr] Length = 246 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D ++TT++ S ++ + +++SGA +++ I ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + GF + + +I + KIALILG EGKG+ +E + + Sbjct: 157 NINNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] Length = 147 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 76/142 (53%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D + DPHN+GAILR+ DG+I TK S + + K+++GA +P ++NL+ Sbjct: 1 MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+ + G+ +G + + + + L++G+EG+G+ ++ M +L M Sbjct: 61 TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120 Query: 258 GIIKALNVSNAAAVALYITQNH 279 G I +LN S AAA+ +Y N Sbjct: 121 GSITSLNASVAAAILMYEVYNQ 142 >gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 11/237 (4%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V+ AL + P K+F L ++ R H + V + +D + Sbjct: 6 EELTIEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSM 65 Query: 105 VGKEAVHQGL----ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + LDA + +LD + DPHN+GAI+R+A Sbjct: 66 -SETGKHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+ + P +++N+ ++++ G + + D + Sbjct: 125 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCAAMDGE 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K I L++GAEG+G+ +E A + M G I +LN S AA V Y Sbjct: 185 VMYNLDLKG-PIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAY 240 >gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 249 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H++S A KIF K + PV VP + +D++ K Sbjct: 6 MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65 Query: 108 EAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A+E L L P L + L++LD + D N GAI R+A D Sbjct: 66 N--HQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 124 AIIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIY 237 >gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly] gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly] Length = 244 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 14/201 (6%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAV--RNSQ 133 L +K + + KI+G H+G AL+ L L L +N+ Sbjct: 36 LARQHNIKIIKINDLTKILGNNN-HRGFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNI 94 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N GAILR+A F+ D +IT +R S ++ + +++SGA +++ + + Sbjct: 95 LILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRTSSGASQYVNKLTVP 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + GF + +I ++KIALI+G EGKG+ + + + Sbjct: 155 NINNVIRYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235 >gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 244 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 12/173 (6%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T+ LS L R + ++LD + DPHN+G+I+R+A A GII Sbjct: 65 HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGAHGII 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLE 221 KR S + ++AK+++GA+E++P +++N+ + ++++ G + + D+ Sbjct: 125 IPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIAAVDMGGDA---FY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +AL++G+EG+G+ T+E + M G + +LN S A + LY Sbjct: 182 QTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLY 234 >gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] Length = 319 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 109 AVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A+HQG+ L+ P LD R+S L++ +D V DP N+GA++RSA AF G Sbjct: 139 ALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNLGAVVRSAAAFDAHG 198 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S +A ++++GA +P R NL AL G T+GL+ D L Sbjct: 199 VVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGLMTVGLAGDGDVDLH 258 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + D +AL++GAEG GL +E + + + ++LNVS Sbjct: 259 DFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVS 304 >gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] Length = 247 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 15/237 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++G+H V + L ++I +L K+ + +L A H V V Q ++ Sbjct: 5 VIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAE-AHGVRVSLVNRQQLESAA 63 Query: 106 GKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ AL+ LL + + L++VLD V DPHN+GA +RSA A Sbjct: 64 G-DGNHQGVIAYAKPGKALDEKGLLD-LIAQMEEDPLILVLDGVTDPHNLGACMRSADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S + K A GA E +P + ++NL AL K+ G G + ++ Sbjct: 122 GVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEAD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 ADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLF 238 >gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 239 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 78/144 (54%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LD + DP N GAI+R+A F D II K + S + ++ K++ GA+ +I Sbjct: 87 KKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++NL++ ++ + GF S +P E+ +K I+G E KG+ P + A Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNAD 206 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + M G +++LNV A + L Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230 >gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] Length = 272 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 25 RNHRDYKKMQS----FNQKSRHTS--QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA 77 + H++ K Q+ F+QK++ + + E+LF+ G ++V ALN N +KIF + + N Sbjct: 6 KTHKNSNKTQTVKKQFSQKNKRKTLKKSEDLFICGRNSVKEALNENQIKKIF--IKSGNN 63 Query: 78 LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RN 131 RL + P++ + +DK+ +QG+ P L+ V + Sbjct: 64 DQRLKDIVKIAQNKNIPIQIEEQEILDKM-SDGVRNQGIVASMKPFEYSDLEEVLLKAKE 122 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 123 DPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVCE 182 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ + Sbjct: 183 IGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFL 242 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS AAA+ +Y Sbjct: 243 VRIPMKGKVSSLNVSVAAALLIY 265 >gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N+GAI+RSA AF G++ +R + +A K+++GA IP + Sbjct: 166 LIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTV 225 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-----LILGAEGKGLRPKTQETA 248 NLT L+ G +GL + L + D +A +++GAEG GL QET Sbjct: 226 NLTRQLKAYQDAGCMVVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETC 285 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +++LN AA+V LY Sbjct: 286 DQIVSIPMANSVESLNAGVAASVVLY 311 >gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus VCS1703A] Length = 242 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 8/233 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIV 105 +++ G+H + ALN+ + ++ K + LA L DA + TVP ID + Sbjct: 3 TIWIGGIHALRQALNDGNLLRLEVSEGKTSKNLASLVADAKAAQ-IEIITVPRHYIDHRL 61 Query: 106 GKEAVHQGLALET--APLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+A E + S A+ + ++VLD + DPHN+GA LR+A+A D Sbjct: 62 -PDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGVDA 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + V+ K A GA E + R++NL ++ M G +G + +++K L Sbjct: 121 VVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKSLF 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+G E KG+ ++T +A + M +++LNVS A + L+ Sbjct: 181 DLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLF 233 >gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] Length = 246 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 89/147 (60%), Gaps = 4/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+GAILR+A FS D +ITT++ S +++ + +++SGA +++ Sbjct: 93 KENAFILLLDEIEDPQNLGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKK 152 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND-KIALILGAEGKGLRPKTQET 247 I ++N+ + + + GF +SD K +IK ND KIALILG EGKG+ ++ Sbjct: 153 ITVANINNTIIFLKKHGFWI--YASDIKGQDINKIKINDKKIALILGNEGKGVHKLIKQN 210 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G I +LNVS + + ++ Sbjct: 211 SDFLIRIPTSGKIDSLNVSVSTGILIF 237 >gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens] Length = 280 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 31/268 (11%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80 D+ K ++ N + E +YGV + AA R+IF L + L Sbjct: 5 DWPKREAVNWRV------EGEAVYGVAPIRAAFL-AERRIFHTLYVQTNLVDNIATGKRK 57 Query: 81 ----LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVR--- 130 ++W N H V+TV Q ++ +V HQGL L+ +PL L P R Sbjct: 58 DKQAVNWILNRAHNLEMKVETVSKQHLNLLVDNRP-HQGLVLDASPLELVPCEYLERPSI 116 Query: 131 ---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 S + + LD V DP N GAILRS G++ + S S V++K+++GALE + Sbjct: 117 QDGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVM 176 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 N+ L G++ +G SS+ + P+++ L+LG EG+GLR + Sbjct: 177 EIQSCRNMMKFLDTSVQNGWRAVGASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKR 236 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + + +LNVS AA + L+ Sbjct: 237 SCTELVSIKADA-VDSLNVSVAAGILLH 263 >gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] Length = 354 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P + + Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT ALQ + G IGL L + ++ + + ++ G+EG+G+ ++T + Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + +++LN + A +ALY Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348 >gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex] Length = 308 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 41/265 (15%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLD------WDANLPHPFPVKT--VPP 98 LYG+H +S AL R I + ++ L R+ W+ N +KT +P Sbjct: 45 ILYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILERCWEEN------IKTLPIPS 98 Query: 99 QTIDKIVGKEAVHQGLALETAPLL---SPTLDAVR--------NSQLLMVLDHVNDPHNI 147 ID IV K HQGL +T L +P ++ + + ++L+ + DP N Sbjct: 99 SKIDTIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPVWLLLNEIQDPMNF 158 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILRSA CD I T S S + V++K++SG +E +P I N T+ Q + + Sbjct: 159 GSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTEFCQLLKESKW 218 Query: 208 QTIGLSSDSKK---------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---- 254 +G S + + P+ ++ +ILG EG+GL + + T ++ Sbjct: 219 DVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELVDLCTHQIYVESRS 278 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 ++ + ++NVS AAAV L+ N+ Sbjct: 279 NLNKNVDSMNVSAAAAVILHSVLNN 303 >gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] Length = 231 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 14/231 (6%) Query: 49 LFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L + G ++V A NN P K+F L + FPV+ + + +++ Sbjct: 4 LIMCGKNSVVDAYNNNWPIEKVFLLHEQNKKFFK-------NAKFPVEVIRKEKMEEWTN 56 Query: 107 KEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG + L++ + +L++VLDH+ DPHN+GAI+RSA A II Sbjct: 57 EN--HQGFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIIL 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S ++ + K +SG I +IR+++++ + + + F + D K ++ Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQV 174 Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++ALI+G EG G+ T A ++ G +++LNVS A + L+ Sbjct: 175 SYSEQVALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLF 225 >gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] Length = 339 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 9/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVND 143 P+ P +D++ +HQG+ L P L + A ++ L LD V D Sbjct: 138 VPLLEAPRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPLFAALDGVTD 196 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RS AF G+I +R + +A K+A+GA +P R NLT AL+ Sbjct: 197 PRNLGAVMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGNLTRALEAYK 256 Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G GL++D PL E EI + + L++G+EGKG+ E + + ++ Sbjct: 257 KQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVSIPIASTTES 316 Query: 263 LNVSNAAAVALY 274 LN AA +ALY Sbjct: 317 LNAGVAAGIALY 328 >gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 251 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 19/241 (7%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQT 100 +N ++G+H V A+ KIF K AL L +LPH + VP + Sbjct: 7 KNTQIFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSY----VPIEK 62 Query: 101 IDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153 + ++ HQG+ +E PL L + + + L ++LDH++D N+GAI+R+ Sbjct: 63 LQRL--TRGNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +GI+ K+ S S + K+++GA+ ++P ++ NL DA+ + G + +G + Sbjct: 121 AECTGVNGILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGAT 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L ++ +A+++GAE G+ + A L + G +LNVS A L Sbjct: 181 EKASSLLYDFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFL 240 Query: 274 Y 274 Y Sbjct: 241 Y 241 >gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 354 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P + + Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT ALQ + G IGL L + ++ + + ++ G+EG+G+ ++T + Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + +++LN + A +ALY Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348 >gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 277 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 83/140 (59%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + D +N+G+ILR+A A G++ KR + +A ++K+++GA+E++P R++N Sbjct: 130 IIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPVARVTN 189 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ ++ + +G +KP + +AL++G+EG+G+ E + ++ Sbjct: 190 ISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSEKCDFIVNI 249 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G I +LN + AAA+ +Y Sbjct: 250 PMQGKISSLNAAVAAAIIMY 269 >gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 354 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P + + Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT ALQ + G IGL L + ++ + + ++ G+EG+G+ ++T + Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + +++LN + A +ALY Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348 >gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797] gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797] Length = 261 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 111 HQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ + AP +++ S L ++LD + DP N GAI+RSA DGI + Sbjct: 85 HQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQDPFNFGAIIRSAEIMGADGIFSGT 144 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 ++++ ++++GA+ H+P ++ ++L + G +G + + + L Sbjct: 145 HEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLNDYNFQ 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G EG G+ P+ Q T + + G ++LNV+ +A++ LY Sbjct: 205 QPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLY 252 >gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 307 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 8/191 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V VP +D + + HQG+ + A + +D + + +++ D + D + Sbjct: 111 VNQVPRSVLDNM-SQTGAHQGVIAQAAVIPYVDIDEILAVAAAKQEDPFIIIADEIQDSY 169 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+A + G++ K + AV AK+++GA+ H+P R++NL + + Sbjct: 170 NLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKASAGAVNHVPCARVNNLVQTMNYLKGK 229 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G GL+ D + + + IAL++G EGKG+ + + M G++ +LN Sbjct: 230 GVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKGISRLVADNCDFTVSIPMQGVLNSLNA 289 Query: 266 SNAAAVALYIT 276 + A +A++ T Sbjct: 290 AVATGIAVFET 300 >gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B] gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] Length = 309 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 27/270 (10%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----- 76 ++RRN +K + F + + G + V AL + S I Q+L K Sbjct: 42 EVRRNEE--RKPKDFETVKFESQVVREDIIEGRNAVIEALKSSSTTIEQILVAKGDTTGS 99 Query: 77 -----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVR 130 A AR VK V + +D++ + VHQG +A+ T D + Sbjct: 100 INVVLAEAR-------EKRLVVKEVDRKKLDEM-SQTGVHQGVIAIVTPYKYCEVEDILE 151 Query: 131 NSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +Q +++LD + DPHN+GAILR+A G++ KR + + + K+++GA+ Sbjct: 152 YAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVYKTSAGAV 211 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +++ ++ N+ + + G G D K + ALI+G+EG+G+ T Sbjct: 212 QYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANFRGAAALIIGSEGRGISKLT 271 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E + + M G I +LN S A + +Y Sbjct: 272 KEKCDLLVKIPMVGQITSLNASVAGGILMY 301 >gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] Length = 261 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 15/193 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142 PV +P +D++VG HQG+ LET+P LL P +++ +++LDH+ Sbjct: 56 IPVIVIPRSELDRMVGS-VNHQGVVLETSPYPYVDFATLLDPAPESI-----VLLLDHLQ 109 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP NI +LR+A A G++ +R + + + +++GA+EH+ ++NL A+ + Sbjct: 110 DPQNIATLLRTAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTL 169 Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G+ + L + + L + + L++GAEG GL P + A + M G I+ Sbjct: 170 REHGYWIVALEPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIE 229 Query: 262 ALNVSNAAAVALY 274 +LN + A ++ALY Sbjct: 230 SLNAAVAGSIALY 242 >gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 249 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H++S A KIF K + PV VP + +D++ K Sbjct: 6 MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65 Query: 108 EAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A+E L L P L + L++LD + D N GAI R+A D Sbjct: 66 N--HQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 124 AIIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIY 237 >gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 246 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 12/192 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ------LLMVLDHVN 142 +K V + +D + E HQG+A + LD ++ ++ +M+LD + Sbjct: 47 IKEVDRKKLDALAQGEN-HQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIE 105 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+RSA D +I R S + + + K + GA ++ IR++NL DA++K+ Sbjct: 106 DPHNLGAIIRSAHLSGVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKL 165 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G L + ++ D IA+I+G EGKG+ ++ + + + M G I + Sbjct: 166 KKAGLWIYCLDMGNDYYFNTDLTGD-IAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDS 224 Query: 263 LNVSNAAAVALY 274 LN S A+++ ++ Sbjct: 225 LNASVASSIVMF 236 >gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 332 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 109 AVHQGLALETAPLLSPT----LDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A+E T LD R+ + LL+ LD V DPHN+GA+LRSA AF DG Sbjct: 145 AAHQGVAIEVPAYEYTTARDLLDRARSLERTPLLVALDQVTDPHNLGAVLRSAGAFGADG 204 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S +A + K ++GA + R +NL AL+++ G +GL +E Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQVKREGCFVVGLDGSGSTDIE 264 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + L+ GAEG GL +ET +A + + +++LN + A ++LY Sbjct: 265 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLY 318 >gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] Length = 252 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 5/188 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147 PVK +P + + +++ + HQG+ALET P D + + ++ LDH+ DP N+ Sbjct: 54 LPVKHLPQRDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNL 112 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 ++R+A A G++ R + + + +++GA+EH+ ++NL AL++ G+ Sbjct: 113 ATLMRTAEAVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGY 172 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L + + + L + L++G+EGKG+ P A L M G + +LN + Sbjct: 173 WVVALEAGPEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAA 232 Query: 267 NAAAVALY 274 A ++ALY Sbjct: 233 VAGSIALY 240 >gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 201 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 8/195 (4%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEG 237 + +I+GAEG Sbjct: 187 QDLTGPTIIIMGAEG 201 >gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] Length = 244 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 4/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N+ +++LD + DP N GAILR++ F+ D +IT++R S ++A +++SGA +++ Sbjct: 91 KNNVFILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATTLRTSSGASQYVNK 150 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND-KIALILGAEGKGLRPKTQET 247 + + N+ + ++ + GF +SD K IK ND KIALI+G EGKG+ +E Sbjct: 151 LIVPNINNVIKDLKKNGFWI--YASDIKGKAINTIKINDTKIALIMGNEGKGIHKLIKEN 208 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G I +LNVS + + ++ Sbjct: 209 SDFLVKIPTTGKIDSLNVSVSTGILIF 235 >gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan troglodytes] Length = 353 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 63/310 (20%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENL---------------FLYGVHT 56 +++D+ + +L H F+ +RH +P E L L+G+ Sbjct: 6 TVRDATWGRLVTRH--------FSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGMSP 57 Query: 57 VSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 AL R + +LL + L R+ ++P P + Q +D + + Sbjct: 58 CLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QKLDTMC-R 112 Query: 108 EAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ +E +PL P +A S QL +VLD + DP N GA+LRSA D Sbjct: 113 YQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVD 172 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSK 217 +IT++R S + V++KS++GA+E + +LT LQ G+ T+G S ++ Sbjct: 173 KVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPS-TE 231 Query: 218 KPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALN 264 P EI L+LG EG GL + Q + T + +P +++LN Sbjct: 232 DPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLN 291 Query: 265 VSNAAAVALY 274 VS AA + L+ Sbjct: 292 VSVAAGILLH 301 >gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 237 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 8/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDP 144 PVK + + +D+++ HQG+A L L+A+ + LL++LD + DP Sbjct: 41 IPVKVLGRKKMDQLLNGN--HQGIAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDP 98 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILR+ DG+I K + + +AK ++GA++ + ++NL A++ + Sbjct: 99 HNLGAILRTCDCIGADGVIIGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKK 158 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ +G ++ + + + + L++G+EG G+ ++ L M G + +LN Sbjct: 159 QGYWVVGTDFENSRDYREGQYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLN 218 Query: 265 VSNAAAVALY 274 S AA + LY Sbjct: 219 ASVAAGILLY 228 >gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 353 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 38/262 (14%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL + L R+ ++P P + Q Sbjct: 51 LLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106 Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL P +A S QL +VLD + DP N GA+LRS Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210 A D +IT++R S + V++KS++GA+E + +LT LQ G+ T+ Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257 G S ++ P EI + L+LG EG GL + Q + T + +P Sbjct: 226 GCPS-AEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284 Query: 258 GIIKALNVSNAAAVALYITQNH 279 +++LNVS AA + L+ N Sbjct: 285 PGLESLNVSVAAGILLHSICNQ 306 >gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] Length = 338 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 6/189 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPH 145 PV+ V +D + HQG+ + T P L A + L++VLDHV D Sbjct: 142 IPVERVARPVLDSLS-SHGAHQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEG 200 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI+RSA G++ + K+++GA+ H+P ++SNL AL+++ + Sbjct: 201 NFGAIVRSAEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAA 260 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF T G + + + + + ++AL++G+EG G+ E L G +++LNV Sbjct: 261 GFWTCGSTEHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNV 320 Query: 266 SNAAAVALY 274 + A V Y Sbjct: 321 AQATTVMCY 329 >gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A+E TA L A+ + LL+ LD V DPHN+GA+LRSA AF DG Sbjct: 83 AAHQGVAIEVPAYEYTTARDLLERARALGRTPLLVALDQVTDPHNLGAVLRSAGAFGADG 142 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S +A + K ++GA + R +NL AL+++ G +GL +E Sbjct: 143 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQLKKEGCFVVGLDGSGSTAVE 202 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + L+ GAEG GL +ET + + + +++LN + A ++LY Sbjct: 203 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAAVATGISLY 256 >gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 248 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 22/221 (9%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +NNP KI Q++A L +L+ + VP + + K+ + HQG+ T+P Sbjct: 33 INNP--KIEQIVAD---LEKLN--------VSISNVPEEKLYKLT--KGNHQGIVALTSP 77 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L+ V + L ++LD ++D N GAILR+A +I K+ S Sbjct: 78 IEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAECTGVHAVIVQKKGGAPVS 137 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 K+++GA+ +IP I++ ++ DA+ + G TI + S+K + + +A+++ Sbjct: 138 GDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEKSEKTIYDQTLTTPVAIVM 197 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+EG+G+ + A L + G I +LNVS A LY Sbjct: 198 GSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLY 238 >gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] Length = 248 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 11/237 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 EN ++G+H++ A+ KI+ L + + + P + VP + ++ Sbjct: 7 ENKMIFGLHSIIEAIEAGRDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPVEKLNSF 66 Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG A + + PTL + L++ LD V D N GAI R+ Sbjct: 67 TEKN--HQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAISRTCECA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ S + +A K+++GAL ++P R NL A++ + + GF I LS + Sbjct: 125 GVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIALSEKAN 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+LGAE +G+ + S + + G I++LNVS AA + +Y Sbjct: 185 IAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIY 241 >gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] Length = 577 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 55/299 (18%) Query: 27 HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 +R++ + +S+ Q++ +S P E +YGV V AAL+ R+ + L + Sbjct: 274 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 329 Query: 81 LDWDAN---------------LPHPFPVKTVPPQTID-KIVGKEAVHQGLALETAPL--- 121 LD +N + + D +V HQGL L+ +PL Sbjct: 330 LDLSSNNRKKKDKKGFEKVLKISEKLGLNLKETSKHDLNMVADNRPHQGLVLDASPLELV 389 Query: 122 ----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L P S L + LD V DP N+GAI+RSA F G++ + S SAV++ Sbjct: 390 KVKELDPISSEEEKSSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVS 449 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAE 236 K+++G+LE + N+ L+ G++ +G S K L + + L+LG E Sbjct: 450 KASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNE 509 Query: 237 GKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274 G GLRP + + T + + +MP +++LNVS AA + L+ Sbjct: 510 GTGLRPLVERSCTELVRISGNMPNDVSVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 568 >gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] Length = 247 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 5/174 (2%) Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQGL AP+ +D + + LL++LD V DP N GA LR A A + Sbjct: 67 EVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADAAGVSAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 IT K S + +A K+++GA E +P +R++NL ++ ++ G IG + +++K + + Sbjct: 127 ITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEAQKTIYE 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LGAEG GLR T+ + +A + M G +++LNVS AA + L+ T Sbjct: 187 FDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240 >gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] Length = 314 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP +D++ +HQGL L+ P L T A LL+ LD+++DP N+G Sbjct: 122 VPRTDLDRM-SNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLG 180 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF+ G++ +R S S +AV ++++GA +P R +NL L+ G Q Sbjct: 181 AIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQ 240 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L++ +++G+EGKGL +E ++ + M G ++LN S A Sbjct: 241 IVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVA 300 Query: 269 AAVAL 273 A V L Sbjct: 301 AGVVL 305 >gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 164 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 3/150 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A N ++++V DHV+ P N+G+I R A AF II S+ L K+A + Sbjct: 11 ASHNKEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTARNTERTV 70 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKN-DKIALILGAEGKGLRPKT 244 + N++ L + GF TI L DS P+ E I N KI+L++GAE G+ P+ Sbjct: 71 RFRESENISTTLINLREQGFSTIALEIDSTSLPIAEVHIANMSKISLVIGAESTGVTPEA 130 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +AH+ M GI ++NV+ AA +ALY Sbjct: 131 LEQCAVIAHIPMHGINSSMNVAQAAGIALY 160 >gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] Length = 250 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ ++I ++L K+ + L + A L F PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGKEIDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ +P+ + P L + LL++LD + D N GAI R+ Sbjct: 63 ITKKN--HQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIY 238 >gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 239 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 13/234 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG + + AL N KI+ K ++ ++ + + + + +VG E Sbjct: 3 YIYGRNAIIEALKNKKVDKIYAAPGLKGSIGKI-YAMAKEQKIVIVEADKKKLKDMVG-E 60 Query: 109 AVHQGL-ALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ AL ++ S D + N +L+M LD + DP+N GAI RSA AF Sbjct: 61 VNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIM-LDEIEDPYNFGAIARSAEAFGFH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S + + KS++GA+E I ++NL+ + ++ G + + Sbjct: 120 GIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIWVYGATMEGDPIC 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +Q++ + I +++G EGKGL ++ + + M G I +LN S A + LY Sbjct: 180 DQDLVGN-ICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILY 232 >gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 16/242 (6%) Query: 44 SQPENLFLYGVHTV--SAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQ 99 S+ + +++YGV+ V S +++ ++I+ +KN +++L L VK V Sbjct: 3 SKDKLMYIYGVNPVLESFKISDALKEIY---ISKNRISKLKEILRLAEEKSISVKIVEET 59 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNS------QLLMVLDHVNDPHNIGAILR 152 I+KI + VHQG+ + P + TLD A++ S ++LD V DP N G+I R Sbjct: 60 FIEKIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICR 117 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A A II K+ S + K+++GA+ H+ + I+N+ A++ + G Sbjct: 118 IADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGA 177 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + +K + + LI+G+EGKG+R + + M G I +LNVS A+A+ Sbjct: 178 EAQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALI 237 Query: 273 LY 274 + Sbjct: 238 TF 239 >gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus hydrogenoformans Z-2901] Length = 237 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 28/238 (11%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTID 102 +YGV+ V AL + + K L+R D N+ + PV VP + + Sbjct: 4 IYGVNPVREAL-------MKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKL- 55 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155 A QG+ + +P+ +D A R ++ ++VL+H+ DP N+GAILRSA Sbjct: 56 -----HAKSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAE 110 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF G+I KR + + +AK+++GA +P R +N+ + L+ + G +G + Sbjct: 111 AFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAK 170 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 SK L +AL++G E GL + M G I +LN S AAA+ + Sbjct: 171 SKASLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLM 228 >gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 18/257 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWD 84 DY +++ N + RH LF+ + +AA P L T+ LD D Sbjct: 16 DYTRLRDVNLR-RHLEAEHGLFMAEGDKVIRRAAAAGFEPR----SFLLTERRAEALD-D 69 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P+ V T +K+VG + +H+G LA L P D + ++ ++VL+ + D Sbjct: 70 VVAASSAPLYVVGEDTAEKLVGFD-LHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVD 128 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GAI RSA D I+ R + K + GA+ +P+ R+ + L + Sbjct: 129 HTNVGAIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLR 188 Query: 204 SWGFQTIGLS-SDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + GF + L+ + PL + D++ L+LG EG GL + E AT+ H+ M Sbjct: 189 AAGFHLMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMAD 248 Query: 259 -IIKALNVSNAAAVALY 274 + +LNV+ AAA+A Y Sbjct: 249 RDVDSLNVTAAAAIACY 265 >gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-23m63] Length = 245 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 4/156 (2%) Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L +D V+N ++LD + DPHN+G+I+R+A A G+I KR S + V+AK Sbjct: 80 LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 139 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P +++N+ + ++++ G D + +Q + + +++G+EG Sbjct: 140 ASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGF 198 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ ++ + + M G + +LN S A + LY Sbjct: 199 GISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 234 >gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] Length = 248 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 6/181 (3%) Query: 99 QTIDKIVGKEAVHQGLA--LETAPLLS--PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRS 153 + +++I G A HQG+ + T S LD RNS LL++L + DPHNIGAI+R+ Sbjct: 61 EKLNQIAGT-AKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRT 119 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + D ++ + +A + K+++GAL H+ ++ +L ++ +H GF+ Sbjct: 120 AEAAAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAAD 179 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D++ AL+LGAEG GL P+ + S + + G I++LNVS A + L Sbjct: 180 MDAELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILL 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] Length = 250 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 15/239 (6%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ENL + G + V A + P K+F L ++ R H + V + +D+I Sbjct: 8 ENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLDQI 67 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG +A A S D + ++ L++LD++ DPHN+GAI+R+A Sbjct: 68 -SETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTANLA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG--FQTIGLSSD 215 G+I KR + +A +AK+++GAL + P +++NL ++++ G F + + Sbjct: 127 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCADMGGE 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S L I +++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 187 SMYRLNL---TGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAY 242 >gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] Length = 246 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 98 FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT ++++ G + + ++K I L++G+EG G+ +ET +A Sbjct: 158 NLTATMEELKKRGMWFVCADMGGEVMYRLDLKG-PIGLVIGSEGNGVGKLVRETCDMVAS 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 217 IPMKGNIDSLNASVAAGVLAY 237 >gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group] Length = 517 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 10/160 (6%) Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL + L+ VR + + + LD V DP N+GAI+RSA F +G++ Sbjct: 297 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 356 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE I + N+ L G++ +G + SK PL + Sbjct: 357 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVASKAIPLSE 416 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + L+LG+EG GLRP + + T + + +PG + Sbjct: 417 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 454 >gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301] Length = 246 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ ++I +L K A +L D + H + VP + ++++ Sbjct: 5 LIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +TA + L+ L+ V + L+++ D V D N GAI RSA Sbjct: 63 -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + L+ + + GFQ + + S+K L Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLF 235 >gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 248 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 4/156 (2%) Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L +D V+N ++LD + DPHN+G+I+R+A A G+I KR S + V+AK Sbjct: 83 LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 142 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P +++N+ + ++++ G D + +Q + + +++G+EG Sbjct: 143 ASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGF 201 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ ++ + + M G + +LN S A + LY Sbjct: 202 GISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 237 >gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] Length = 246 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GA+ + P +++ Sbjct: 99 FIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT A++++ G + + + ++K I L++G EG+G+ +E +A Sbjct: 159 NLTAAIKELKEKGLWFVCADMGGTEMYKLDLKG-PIGLVIGNEGEGVSKLVKENCDFIAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] Length = 332 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A+E TA L A+ ++ LL+ LD V DPHN+GA+LRSA AF DG Sbjct: 145 ATHQGVAIEVPAYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADG 204 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S +A + K ++GA + R +NL L+++ G +GL +E Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVE 264 Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + L+ GAEG GL +ET +A + + +++LN + A ++LY Sbjct: 265 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLY 318 >gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5] Length = 243 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ ++I +L K A +L D H V+ VP + ++++ Sbjct: 4 IIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + + L+ L+ V + L+++ D V D N GAI RSA Sbjct: 62 -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + ++ + + GFQ + + S+K L Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLF 234 >gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] Length = 258 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 VK + +D + G A HQG+A T++ + S +++ D + DPH Sbjct: 57 VKDADSRKLDAMSGG-ASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPH 115 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++R+A GI+ KR S S + +++K+++GA+ ++P R+SNL + ++ Sbjct: 116 NLGALIRTAECAGAHGILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKER 175 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G D + + +AL++G+EG+GL + + L M G + +LN Sbjct: 176 GIWVYGADMDGENWCATDFSGG-VALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNA 234 Query: 266 SNAAAVALY 274 S A + +Y Sbjct: 235 SVAGGILMY 243 >gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 317 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 32/254 (12%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKI 104 L+GV S AL+ R +F+L ++ + + PV V + +D + Sbjct: 56 ILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTSEFVLQAAARGVPVLHVGRRELDTL 115 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR----------NSQLL-MVLDHVNDPHNIGAILRS 153 G VHQG+ LE PL L+ N QLL + L+ + DP N+GA+LRS Sbjct: 116 CGGR-VHQGVCLEATPLRFKRLEEAEEPGLGDGESPNRQLLWLALEQIQDPMNLGALLRS 174 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D ++T++R S + ++K++SGA+E +L L+ + G++ +G Sbjct: 175 AYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDLRSFLKAKAAEGWEVVGTV 234 Query: 214 SDSKK----PLEQEIK---NDKIALILGAEGKGLRPKTQETATSM------AHLHMPGII 260 S S+ P+ ++ N I L++G+EG GL +TQ M LH PG I Sbjct: 235 SQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLCHQMLVIPSGRALH-PG-I 292 Query: 261 KALNVSNAAAVALY 274 ++LNVS A + L+ Sbjct: 293 ESLNVSVATGILLH 306 >gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 254 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A T+D + + L++LD++ DPHN+GAI+R+A G+I Sbjct: 75 HQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGAIIRTANLAGAHGVI 134 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A +AK+++GAL + P +++NL ++++ G + D ++ + Sbjct: 135 IPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDGEQMYDLN 194 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 195 LTG-PIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAAGVLAY 244 >gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 258 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 22/212 (10%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLD-----AVRNSQ 133 PV+T+ + TI VGKE + HQG+ A +D A + + Sbjct: 48 PVRTIVREAKKHGTILNFVGKERLSQLTQTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGE 107 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L+VLD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P + Sbjct: 108 DPFLIVLDGIEDPHNLGAIIRTANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAK 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL ++++ G + D + + + I L++G EG G+ +E + Sbjct: 168 VTNLVKTMEELKEKGIWFVCADMDGQSMYDMNLTG-PIGLVVGNEGDGVSRLVKENCDFV 226 Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 A + M G I +LN S A V Y I + AK Sbjct: 227 ASIPMKGEITSLNASVAGGVLAYEIVRQRLAK 258 >gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] Length = 255 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQG-LALETAPLLSPTLDAVRNSQ---- 133 PV+T+ + TI VGKE + HQG +A A S D ++ ++ Sbjct: 46 PVRTIVREAKKHDTIINFVGKERLSQISVTGKHQGVIAYAAAYEYSEVEDMLKLAEERGE 105 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P + Sbjct: 106 DPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAK 165 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL ++++ G + + +K I L++G EG+G+ +E + Sbjct: 166 VTNLAKTMEELKEKGLWFVCADMGGESMYRLNLKG-PIGLVIGNEGEGVGRLVKEKCDFV 224 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M G I +LN S AA V Y Sbjct: 225 ASIPMKGEIDSLNASVAAGVLAY 247 >gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 595 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL L P L L + LD V DP N+GAI+RSA F G++ Sbjct: 372 HQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVV 431 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE + N+ L G+Q +G S + PL + Sbjct: 432 LCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLGGSVSPRAIPLNE 491 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 L+LG+EG GLRP + + T + + +PG I Sbjct: 492 ISPGAPTILVLGSEGTGLRPLVERSCTQL--IRIPGNI 527 >gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 7/188 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146 V+T + + G QG LA AP ++P + V R ++VLD V +P N Sbjct: 63 VETASAHRVKVLAGNGRHDQGVLADVVAPRMAPVEEFVSDLGTRRGASVLVLDAVTNPAN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ILRSA A DG++ +R P+ ++ K+++G P +R + + + G Sbjct: 123 VGMILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFSAPVLRSATAAQGCAVLRAAG 182 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F GL++ LE E+ +++AL+LG E +GL +E + M G +++LNV+ Sbjct: 183 FAVHGLAAGGDSLLEAELP-ERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVA 241 Query: 267 NAAAVALY 274 +A AVA Y Sbjct: 242 SAGAVAAY 249 >gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] Length = 250 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 8/185 (4%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQL--LMVLDHVNDPHNIGAIL 151 + +D++V ++ HQG+A + P+ + + A R ++ ++LD + D HN+GAI+ Sbjct: 57 KALDRLVPQQR-HQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAII 115 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A ++ KR+S + + K+++GA+E++P + I N T L+ + GF IG Sbjct: 116 RTAECAGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIG 175 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + L++G EGKG+ +E + + M G + +LN S AAA+ Sbjct: 176 ADMNGEADYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAAL 235 Query: 272 ALYIT 276 +Y T Sbjct: 236 LIYET 240 >gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 382 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 40/257 (15%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 L+G+ S AL R +L T A +R D +P V+TVP + +D+ Sbjct: 124 MLFGIAPCSLALATSKRSFSRLFLKAGVTPTTEAFSRQAEDRKIP----VQTVPRKVLDR 179 Query: 104 IVGKEAVHQGLALETAPLLSPT---------LDAVRNSQ----LLMVLDHVNDPHNIGAI 150 + VHQG+ LE PL PT L+ + L + L+ + DP N+GA+ Sbjct: 180 L-SHGGVHQGVCLEATPL-HPTGWTQAPAHRLEGATTEEAPQLLWLALEGIQDPMNLGAV 237 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA DGI+ +++ S + V++K++SGA+E + +L L+ G++ + Sbjct: 238 LRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSKEGWEVL 297 Query: 211 GLSSDSK--------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MP 257 G + +K L+ I L+LG EG GL P+T+ M + P Sbjct: 298 GTVAHAKAQDGIPVVSCLDFRWMKPTI-LVLGNEGHGLSPETKSLCRRMLTIAPGRELEP 356 Query: 258 GIIKALNVSNAAAVALY 274 G I++LNVS AA + L+ Sbjct: 357 G-IESLNVSVAAGILLH 372 >gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] Length = 238 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 10/187 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIG 148 VP +D ++ K HQG+A L P + +A +Q LL+ LD + DP N G Sbjct: 45 VPRIELDTLL-KTTHHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYG 103 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA+A G+++ +R + S + K+++GA +P IR+ NL AL+++ G Sbjct: 104 AMIRSALALGAHGVLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVW 163 Query: 209 TIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL K P E + K +AL++G+EG+G+R +E+ + + + ++LN S Sbjct: 164 VYGLDLKGEKAPRELDFKRP-LALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASV 222 Query: 268 AAAVALY 274 A ++ALY Sbjct: 223 ALSIALY 229 >gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] Length = 258 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 26/243 (10%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH- 89 M+ + R + + G + V AL P KIF LAR + DA L H Sbjct: 1 MREQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIF--------LARGETDATLGHI 52 Query: 90 -------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LL 135 V + +D + A HQG+ A T+D + N+ L+ Sbjct: 53 ASSAREKGIVVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLI 111 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V D ++DPHN+GA++R+A G+I KR S +AV+AK+++GA+ ++P R+ NL Sbjct: 112 VVCDELSDPHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNL 171 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T L+++ G G ++D L A+++G+EG G+ E + Sbjct: 172 TALLKELKDEGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIP 231 Query: 256 MPG 258 M G Sbjct: 232 MKG 234 >gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 255 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 81/148 (54%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++NS L ++L+++ DP N+G I+RSA AF + +K + S ++ G++ H Sbjct: 98 DIIKNSGLFILLENIQDPGNLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFH 157 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P I N+ + L M + S +K L +K A ++G E GLR +T+ Sbjct: 158 LPIIDSINIKNTLNLMKNKKISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETEN 217 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +A ++ ++MPG ++LN + AA++ +Y Sbjct: 218 SADTLVKIYMPGNTESLNAATAASIIMY 245 >gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ] Length = 252 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 24/245 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDK 103 + G+H+++ A+ N + +++AT L RLD + F VK V P + K Sbjct: 6 LIVGIHSIAEAITNRPSAVRKIIATAEGLKEFRKKTRLDKEIK---QFDVKIVSPHDVQK 62 Query: 104 IVGKEAVHQGLALETAP-LLSPTLDAVRNSQL--------------LMVLDHVNDPHNIG 148 + + L+ + P + +D V L ++ LD V D HN Sbjct: 63 MAEQFYKELELSFQRVPSQIFMVVDPVETYDLAWLYDQIDKSPRYKILCLDQVTDVHNAA 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A + D ++T + A+ ASGA+EH+ + S+L A+ K+ Sbjct: 123 AIMRTAAFYGVDCVVTGAKGHFGTGPSFARIASGAIEHVNIVICSSLPKAITKLIEKNVS 182 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG S +K+ + + +AL+LGAE G+ + G IK+LNVS A Sbjct: 183 VIGFSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVA 242 Query: 269 AAVAL 273 AA+A+ Sbjct: 243 AAIAM 247 >gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 165 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 5/151 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + N ++++V +H+ P N G+I R A AF II + S+ L K+A + I Sbjct: 11 STHNKEIILVCEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEKTI 70 Query: 188 PYIRISN-LTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243 P+ R+S+ + + LQ++H F +I L + + KP+ + DK+ALI+GAE G+ + Sbjct: 71 PF-RVSDTIKNTLQELHDLSFTSIALEITSNSKPMSTVDFSRLDKVALIIGAENIGITDE 129 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T E ++AH+ M GI ++NV+ A +ALY Sbjct: 130 TLEQCNNIAHITMYGINSSMNVAQATGIALY 160 >gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500] Length = 520 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 26/192 (13%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDP 144 V Q +D + K VHQGL L+ +PL TL +A L++ LD + DP Sbjct: 316 VDKQRLD-VFSKFRVHQGLVLDCSPLTITTLTGLSVPDMTEFEADNRYPLIIALDELWDP 374 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GAI+R+ F DG+I T + S S +KS+SGA+E P + +L LQ + Sbjct: 375 QNTGAIVRTCHYFGLDGVIVTDKGSIPVSPFASKSSSGAIEEFPIFKCLSLASFLQASKA 434 Query: 205 WGFQTIGLS-SDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G+ IG S SD P ++I N KI L++G EG GL+ K ++H + + Sbjct: 435 RGWHIIGTSVSD---PESKDITNVKIDKPTVLVIGNEGYGLKDKV------VSHCNEMIM 485 Query: 260 IKALNVSNAAAV 271 IK L S+ + Sbjct: 486 IKGLQRSSNEKI 497 >gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] Length = 244 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G I+R+AVAF D ++ + + + +S GAL HI R + L Sbjct: 102 VVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALFHIAISR-TEL 160 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL ++ G IG + +PL + ++ IA++LG EG+G+RP T + A + Sbjct: 161 IPALNELKELGVTVIGTALQGAQPLSELPVSENIAVVLGNEGQGIRPATLDICDQRALIE 220 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + LY Sbjct: 221 MSS-FESLNVAVAAGICLY 238 >gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] Length = 244 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 V+ V + I+K A HQG+ + +D + RN L++LD + DPH Sbjct: 48 VEYVDKKYIEKFAENTA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPH 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A C G+I K + +A K+++GA+ +I R++N+T + + Sbjct: 107 NLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEH 166 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ + Q I L++G EGKG+ +E + + M G ++LN Sbjct: 167 NIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNA 226 Query: 266 SNAAAVALY 274 SNAA++ +Y Sbjct: 227 SNAASILIY 235 >gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] Length = 240 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 8/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDP 144 PVK + + +D+++ HQG+A L L++V + LL++LD + DP Sbjct: 44 IPVKVLGRKKMDQLLNGN--HQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDP 101 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILR+ DG+I K + + +AK ++GA++ + ++NL A++ + Sbjct: 102 HNLGAILRTCDCIRADGVIIGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKK 161 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ +G ++ + + + + L++G+EG G+ ++ L M G + +LN Sbjct: 162 QGYWVVGTDFENSRDYREGQYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLN 221 Query: 265 VSNAAAVALY 274 S AA + LY Sbjct: 222 ASVAAGILLY 231 >gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 271 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 6/188 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P P+ VP + +D I G VH+G+ +T P L L + L++VL +++ Sbjct: 76 PCPIYCVPQKVMDDITGFH-VHRGILGIGKRKTLPSLQSFLKNLPEKALILVLCGISNHD 134 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A AF+ GII K + ++GA +PY + +++ D + +H Sbjct: 135 NMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDIIAALHDE 194 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 F LS + L Q K + ALI G EG GL P + +T++ + M +LNV Sbjct: 195 NFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDSLNV 253 Query: 266 SNAAAVAL 273 + A+ +AL Sbjct: 254 ATASGIAL 261 >gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] Length = 265 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD++ DPHN+GAI+R+A G+I KR + +A +A++++GAL + P +++ Sbjct: 118 FLIILDNIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVT 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + G + D + +K I L++G EG+G+ ++T A Sbjct: 178 NLVKTMEDLKKKGLWFVCADMDGDVMYDVNMKG-PIGLVIGNEGEGVGRLVKDTCDFTAR 236 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 237 IPMKGDIDSLNASVAAGVLAY 257 >gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens] gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Homo sapiens] gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens] gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [synthetic construct] Length = 353 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 38/257 (14%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL + L R+ ++P P + Q Sbjct: 51 LLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106 Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL P +A S QL +VLD + DP N GA+LRS Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210 A D +IT++R S + V++KS++GA+E + +LT LQ G+ T+ Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257 G S ++ P EI L+LG EG GL + Q + T + +P Sbjct: 226 GCPS-TEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284 Query: 258 GIIKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 285 PGLESLNVSVAAGILLH 301 >gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] Length = 259 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 16/236 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG+HTV++ LN+ + +F+L+ + N + ++ ++ V + +D + Sbjct: 6 IYGIHTVNSYLNDKN-VVFELVYILKNSRNNRIFQIKKKLE-SFGVSIRLVNRRFLDHL- 62 Query: 106 GKEAVHQG-LALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG LA+ +++ + + L ++LD + D N+G+ LR+A F Sbjct: 63 SNYISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I +K S + ++ K + GA ++P IR +NL + ++K+ + Q +G + + Sbjct: 123 DAVIVSKNRSARINEIVEKVSCGASRYVPMIR-TNLVNCIEKLKKYDVQVLGTDEKANRS 181 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + EI KIA+I+G E KG+R ++ + + + +LNVS A + L+ Sbjct: 182 IYDLEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLF 237 >gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2] gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2] Length = 238 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 95/180 (52%), Gaps = 13/180 (7%) Query: 108 EAVHQ---GLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 E VHQ G+A E++ + D+ + ++++VLD + DP N GAI R++ + Sbjct: 53 EVVHQNILGIAKESSLTIHTDFDSFIEKINNLNTDKKIILVLDEIQDPGNFGAICRTSKS 112 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII K + + K++ G + ++ +++++NL++ L K+ + T+ + D Sbjct: 113 FQVAGIIFKKNNQIQINETVIKTSLGTVNYLNFLKVNNLSEVLNKLKKENYWTVCTALDE 172 Query: 217 KKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + K D K+ +I+G E KG+ ++ + + + M +++LNVS + A+ LY Sbjct: 173 KSIPLSKFKTDINKLVVIVGNENKGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILY 232 >gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] Length = 263 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ P ++ + N +++LD + DPHN+G+I+R+A GI+ Sbjct: 85 HQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILDEIEDPHNLGSIMRTAEICGVHGIV 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++N+ A+ ++ G G D + Q Sbjct: 145 IPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGTWVYGADMDGENYCFQT 204 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG+G+ T++ + + M G I +LN S AA + +Y Sbjct: 205 NFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGKITSLNASVAAGIMMY 255 >gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 114/251 (45%), Gaps = 28/251 (11%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVK--TVPPQ 99 QPE ++G+H V+ L + +L LA R+ L H P+ +PP Sbjct: 42 QPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIPLDRAGLPPA 101 Query: 100 TIDKIVGKEAVHQGLALETAP--------LLS--PTLD-------AVRNSQLLMVLDHVN 142 E HQG+A AP LL P L A LL+VLD + Sbjct: 102 A------AELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQ 155 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GA+LRSA AF DG+I K S S + K+A+G + R +NL AL + Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G S ++ L + L+LG E KG+RP ++ + + + +++ Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275 Query: 263 LNVSNAAAVAL 273 LNVS AA + L Sbjct: 276 LNVSVAAGIML 286 >gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis] gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis] Length = 517 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 10/158 (6%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL L P L + LD V DP N+GAI+RSA F GI+ Sbjct: 301 HQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFFGAAGIV 360 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE + N+ L G++ +G S S PL + Sbjct: 361 LCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASMAVPLNE 420 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + L+LG+EG GLRP + + T + + +PG I Sbjct: 421 VVPGEPTILVLGSEGTGLRPLVERSCTQL--VRIPGNI 456 >gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] Length = 589 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 57/300 (19%) Query: 27 HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 +R++ + +S+ Q++ +S P E +YGV V AAL+ R+ + L + Sbjct: 286 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 341 Query: 81 LDWDANLPHP-----------------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121 LD +N +K ++ +V HQGL L+ +PL Sbjct: 342 LDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-MVADNRPHQGLVLDASPLEL 400 Query: 122 -----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L P L + LD V DP N+GAI+RSA F G++ + S SAV+ Sbjct: 401 VKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVV 460 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235 +K+++G+LE + N+ L+ G++ +G S K L + + L+LG Sbjct: 461 SKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGN 520 Query: 236 EGKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274 EG GLRP + + T + + +MP +++LNVS AA + L+ Sbjct: 521 EGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 580 >gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae 623-39] gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae 623-39] Length = 203 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 26/210 (12%) Query: 48 NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96 N +YG+H V+A L +P+R + +LL N L RL ++ + Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54 Query: 97 PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150 + +D + A HQGL P L LD A LL+VLD V DPHN+GA Sbjct: 55 SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A +I K S +A ++K A GA E +P +R++NL ++ + G + Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G + ++ + Q +A+++GAEG G+ Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGM 203 >gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO] gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae TMO] Length = 233 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 5/183 (2%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++K+ G+E +QG+ ++ + + + +++LDH+ DPHN+GAI+R+ V Sbjct: 54 LEKLCGEEK-NQGIVIDLD--FNYADETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVS 110 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ TK S + + K ++G + IP + ++N+ ++K+ + G+ G + K Sbjct: 111 AIVITKDRSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKLKNKGYWVYGADMNGKNLY 170 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 E+ + +A++ G EG+GL +E + + M I +LNVS +A + L+ I++ Sbjct: 171 EEGFIS-PVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISRKC 229 Query: 280 FAK 282 F K Sbjct: 230 FMK 232 >gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho melanesiensis BI429] Length = 238 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNI 147 PF T+ I + + E HQG+ ++ + + L++LD + DPHN Sbjct: 45 PF---TIANNRILEKLSNEKKHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNF 101 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R++VA D ++ K S + + K + G L I ++N+ ++K+ + G Sbjct: 102 GAIIRTSVAAGADALVIPKNNSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGI 161 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + D K+ + ++K +A++LG EG G+R + + + M +++LNVS Sbjct: 162 WVYGAAMDGKEYFKVDLK-KPVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSV 220 Query: 268 AAAVALY 274 +A + LY Sbjct: 221 SAGILLY 227 >gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] Length = 245 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 11/233 (4%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+N KIF K L R + + VP + ++++ Sbjct: 7 IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLTKNN 66 Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ L ++ + + L ++LD ++D N GAI+R+A DG Sbjct: 67 --HQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P +++++ DA+ + + G + I S ++ + Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+I+G+E G+ P + A A L + G I++LNVS A V LY Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLY 237 >gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542] gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542] Length = 339 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 10/176 (5%) Query: 108 EAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ++VHQG+A++ P LL + + L++ LD V DP N+GA+LRSA AF Sbjct: 155 DSVHQGVAIQVPPYEYRDPEDLLDIAAE-LEQPALIVALDGVTDPRNLGAVLRSAGAFGA 213 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S +A K ++GA +P R +NLT L + S G +GL + Sbjct: 214 HGVLVPERRSAGVTASAWKVSAGAAARVPVARATNLTRTLLEYKSAGCFIVGLDGGGEVS 273 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + D I L++G+EGKGL +ET ++A + + +++LN AA +ALY Sbjct: 274 VGDLAFSVDPIVLVVGSEGKGLSRLVRETCDAIASIPIASAVESLNAGVAAGIALY 329 >gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 265 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 7/189 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147 P+ +P + ++VG H+G +A PLLS R LMV V DP N+ Sbjct: 72 PIYCLPRDQLQELVGFN-FHRGVMACARRPLLSDLQQVAWPDRERLTLMVAAQVVDPENL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+++R+ AF D I+ R S + ++G IP + SNL D L S GF Sbjct: 131 GSLIRAGSAFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNVARSLGF 190 Query: 208 QTIGLSSD-SKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 Q I D S PL++E ++D+ AL+ G EG GL A + M +LNV Sbjct: 191 QLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRCVTIPMSRGSDSLNV 250 Query: 266 SNAAAVALY 274 S AA V LY Sbjct: 251 SMAAGVFLY 259 >gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] Length = 237 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL E A L +A + LL++LD V DP N GAI+R+AVA G+I Sbjct: 59 HQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHGVI 118 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + +R S S ++ K+++G +P +++ NL ++++ G G S ++K L Sbjct: 119 SEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLTML 178 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A+++G+EG+G+R ++ A + + ++LN S A A+ LY Sbjct: 179 DYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLY 229 >gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana] Length = 577 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 57/300 (19%) Query: 27 HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 +R++ + +S+ Q++ +S P E +YGV V AAL+ R+ + L + Sbjct: 274 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 329 Query: 81 LDWDANLPHP-----------------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121 LD +N +K ++ +V HQGL L+ +PL Sbjct: 330 LDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-MVADNRPHQGLVLDASPLEL 388 Query: 122 -----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L P L + LD V DP N+GAI+RSA F G++ + S SAV+ Sbjct: 389 VKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVV 448 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235 +K+++G+LE + N+ L+ G++ +G S K L + + L+LG Sbjct: 449 SKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGN 508 Query: 236 EGKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274 EG GLRP + + T + + +MP +++LNVS AA + L+ Sbjct: 509 EGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 568 >gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] Length = 308 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 7/188 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV--RNSQLLMVLDHVNDPHN 146 VK+VP +D I HQG+ LE LS + A + L++VLDHV D N Sbjct: 111 VKSVPRTQLDAI-SSHGAHQGIVLEVGKFPYADLSDIIAAAPAGSPALVVVLDHVTDAGN 169 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI+RSA G++ + S + K+++GA+ H+P ++ N+ AL+ + S G Sbjct: 170 FGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHLPIAQVPNIARALEDLKSAG 229 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + ++ ++AL++G+EG G+ +T L G ++LNV+ Sbjct: 230 FWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVLDTCDFTTKLPQRGETESLNVA 289 Query: 267 NAAAVALY 274 AA + Sbjct: 290 QAATALCF 297 >gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] Length = 323 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 111 HQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A E + LD + + LL++LD V DP N GA LR+A A +I Sbjct: 134 HQGIAAIAAERENTLDFADLLDQITDRTLLLILDGVTDPRNFGACLRAADAAGVQAVIVP 193 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + S + AK+A+GA E +P + ++NL A+ ++ G G + ++ + + Sbjct: 194 RDRSARMTPAAAKAAAGAAETVPVVSVTNLASAIMELRDNGVFVAGTAGETDTTIYDVAQ 253 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A +LGAEG+GLR T+ +A + M G +++LNVS A+ + L+ Sbjct: 254 ARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGSVESLNVSVASGICLF 302 >gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] Length = 247 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ D + D HN+GAI+R+A I+ +R+S + +AK+++GA+E++P +RI Sbjct: 97 FLVLADGIEDVHNLGAIIRTAECAGVHAILVPQRHSAPINETVAKTSAGAVEYMPVVRIG 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+T L+++ GF +G ++ + + L++G+EGKG+ ++ + Sbjct: 157 NVTTTLKQLKKQGFWVLGADMVGEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVLVR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AAA+ +Y Sbjct: 217 IPMFGRINSLNASVAAALLMY 237 >gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 248 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 16/195 (8%) Query: 93 VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139 V+ VP + +D GK HQG+ + A + +DA S L+++LD Sbjct: 50 VEMVPRKVLD---GKSDRGSHQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 H+ D N+GA+ RSA A GI+ + S A KS++GA+ H+P ++SNL + Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ GF G + + + + KIAL++G E +G+ E + L + G Sbjct: 167 SRLKEEGFWIAGATEHASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226 Query: 260 IKALNVSNAAAVALY 274 + +LNV+ AA +Y Sbjct: 227 VASLNVAQAATACMY 241 >gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 244 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 8/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPH 145 V+ V + I+K A HQG+ + ++D + L++LD + DPH Sbjct: 48 VEYVDKKYIEKFAENTA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPH 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A C G+I K + +A K+++GA+ +I R++N+T + + Sbjct: 107 NLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEH 166 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ + Q I L++G EGKG+ +E + + M G ++LN Sbjct: 167 NIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNA 226 Query: 266 SNAAAVALY 274 SNAA++ +Y Sbjct: 227 SNAASILIY 235 >gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-66c26] gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP 107932] gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-63q42] gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC 43255] gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-76w55] gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-97b34] gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-37x79] gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-32g58] Length = 245 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + L +D +N ++LD + DPHN+G+I+R+A A G+I Sbjct: 65 HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S + V+AK+++GA+E++P +++N+ + ++++ G D + +Q Sbjct: 125 IPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQN 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 LTG-PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 234 >gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] Length = 261 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 67/107 (62%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V D ++DPHN+GA++R+A A G+I KR S +AV+AK+++GA+ H+P R+ Sbjct: 112 LIVVCDELSDPHNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVP 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 NL AL+++ G G +++ L Q A+++G+EG G+ Sbjct: 172 NLVAALKELQQAGVWVFGTAAEGTTSLYQADLKGPAAIVIGSEGDGM 218 >gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] Length = 257 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 27/208 (12%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVN 142 PVK V Q +D + A HQG+ +E +L D + +++ D + Sbjct: 61 IPVKQVREQKLD-FMAHGAAHQGVIAIGACAEYVEVDDILKIAADKGEDP-FIIICDEIE 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDAL 199 DPHN+GAI+R+A A GII KR S S + + K+++GA +P R++NL D L Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178 Query: 200 QKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +K W + T G D + P + L++G+EG G+ +E + L Sbjct: 179 KKQGIWIYGTDGAGENYSGVDMRGP---------VGLVVGSEGFGMGRLMKEKCDFLLSL 229 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282 M G I +LN S AA + +Y AK Sbjct: 230 PMAGKITSLNASVAAGIFMYEVVRQRAK 257 >gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] Length = 255 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + L P L + L ++LD + D N GAI R+ Sbjct: 63 ITRKN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240 Query: 275 ITQNHFAK 282 + Q F + Sbjct: 241 VKQRGFTE 248 >gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630] gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3 [Clostridium difficile] gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] Length = 248 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + L +D +N ++LD + DPHN+G+I+R+A A G+I Sbjct: 68 HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S + V+AK+++GA+E++P +++N+ + ++++ G D + +Q Sbjct: 128 IPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQN 187 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 188 LTG-PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 237 >gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8] gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8] Length = 238 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 12/199 (6%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVR------NSQLLMVLDHVNDP 144 P VP +D ++ + HQG+A E P + DA+R LL+ LD V DP Sbjct: 41 PYTLVPRIELDTLL-RTTHHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDP 99 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GA++RSA+A G+++ +R + S + K+++GA +P +++ NL L+ + Sbjct: 100 RNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKE 159 Query: 205 WGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G GL +K P E + + L++G+EG+G+R +ET + + + ++L Sbjct: 160 EGLWVYGLDVRGEKAPWELDYAR-PLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESL 218 Query: 264 NVSNAAAVALYITQNHFAK 282 N S A +ALY Q A+ Sbjct: 219 NASVALGIALY--QARLAR 235 >gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] Length = 325 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 87/148 (58%), Gaps = 5/148 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +++++LD V DPHN+GA++R+A F ++ + + SAV +S++GA E +P Sbjct: 175 RGHRIIVLLDGVQDPHNLGAVIRNAEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPL 234 Query: 190 IRISNLTDALQKMHSWG-FQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQ 245 +++N+ AL++ + G + +G D P+ Q+ +D I L+LG+E +G+R T+ Sbjct: 235 GQVTNVARALEQAKASGTWWVVGTVVDEGTPVHEFAQDPPSDMI-LVLGSEERGMRRLTR 293 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + G + +LNVS A AVAL Sbjct: 294 ERCDFLVTIARGGSLGSLNVSAAGAVAL 321 >gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS] gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS] Length = 314 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP +D++ A+HQGL L+ P L T A LL+ LD+++DP N+G Sbjct: 122 VPRSDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF G++ +R S S +AV ++++GA +P R +NL L+ G Q Sbjct: 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D L++ + +++G+EGKGL +E ++ + M G ++LN S A Sbjct: 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300 Query: 269 AAVAL 273 A V L Sbjct: 301 AGVVL 305 >gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++ G +++ A+ N P +KI+ L ++ + NL + + V V +DK+ K Sbjct: 4 YICGKNSLLDAIKNNVPIKKIY--------LTKIVPNLNL-NTYQVHIVEKSFLDKL-AK 53 Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG E + ++++ N + ++VLDH+ D HN+GAI+RSA A II Sbjct: 54 GINHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILP 113 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI 224 K + + + +SG I +I +++L +K+ F S S + KPL+Q + Sbjct: 114 KDNCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIV 173 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 174 FNQPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group] Length = 427 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL + L+ VR + + + LD V DP N+GAI+RSA F +G++ Sbjct: 207 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 266 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE I + N+ L G++ +G + K PL + Sbjct: 267 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE 326 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + L+LG+EG GLRP + + T + + +PG + Sbjct: 327 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 364 >gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 236 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 21/236 (8%) Query: 50 FLYGVHTVSAALNNPSR-KIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDK 103 +++G +TV+A L + + K L N ALA+ V+ V +DK Sbjct: 4 YIFGKNTVTAYLKSGQKPKNLYLFNKGNYQEIVALAK-------EQGIRVQFVDKFRLDK 56 Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + VHQG+ +E L + +N+ L+++ D + DPHN+GAILR+ A Sbjct: 57 MA--DGVHQGVVIEIQDYKYHSLQEIIKGAKNN-LIVLCDQLEDPHNLGAILRTCDACGV 113 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG++ K S ++ +AK ++GA+ + +N+ A+ ++ G+ + + Sbjct: 114 DGVVVGKHRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAV 173 Query: 220 LEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E D + L++G+EGKG+ ++ + + M G + +LNVS A V L+ Sbjct: 174 DYTEFNVDMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLF 229 >gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS] gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS] Length = 314 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP +D++ A+HQGL L+ P L T A LL+ LD+++DP N+G Sbjct: 122 VPRSDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF G++ +R S S +AV ++++GA +P R +NL L+ G Q Sbjct: 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D L++ + +++G+EGKGL +E ++ + M G ++LN S A Sbjct: 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300 Query: 269 AAVAL 273 A V L Sbjct: 301 AGVVL 305 >gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group] Length = 517 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL + L+ VR + + + LD V DP N+GAI+RSA F +G++ Sbjct: 297 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 356 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE I + N+ L G++ +G + K PL + Sbjct: 357 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE 416 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + L+LG+EG GLRP + + T + + +PG + Sbjct: 417 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 454 >gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi] gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi] Length = 246 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 80/141 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N GAILR+A FS D ++TT++ S ++ + +++SGA +++ I ++ Sbjct: 97 FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + + + GF + + +I + KIALILG E KG+ +E + + Sbjct: 157 NINNTIYFLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNESKGVHKLIKENSDFLIR 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I +LNVS + + ++ Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237 >gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter nitrofigilis DSM 7299] Length = 230 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 4/167 (2%) Query: 111 HQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ T ++ ++ + ++VLD + D NIGAI R+A A DGI+ S Sbjct: 61 HQGFFLKLKEEFDYTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDGIVAAGVKS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND 227 +ES V+ +++SGA+ +P+ N D ++ GF IG ++ K K+D Sbjct: 121 LNESGVI-RTSSGAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTDLKKYGTITKDD 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K+AL LG+EG+GL K + M +LNVS AA + +Y Sbjct: 180 KVALFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIY 226 >gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 239 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 77/144 (53%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LD + DP N GAI+R+A F D II K + S + ++ K++ GA+ +I Sbjct: 87 KKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++NL++ ++ + GF S + E+ +K I+G E KG+ P + A Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKVDYANKTVFIVGNENKGVSPLILKNAD 206 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + M G +++LNV A + L Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230 >gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON] gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis 50-1 BON] Length = 249 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP ++ + + +++LD + DPHN+GAI+R+A GII Sbjct: 71 HQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAECMGAHGII 130 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S +A + K+++GA+E+I ++N+ ++++ G +G + + Sbjct: 131 IPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWIMGADMRGRPCRSMD 190 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K I LI+G EG G+R +E + + M G I +LN S AA + +Y Sbjct: 191 LKG-PIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMY 240 >gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus] gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus] gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus] gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 320 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 23/198 (11%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 Q +D + G + VHQG+ +E +PL D ++ QL +VL+ + DP N+GA++ Sbjct: 103 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 161 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D +IT++R S + V++K+++GA+E + +L LQ G+ +G Sbjct: 162 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVG 221 Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPK----TQETATSMAHLHM 256 +S SK P+ ++ + L+LG+EG GL + Q T + H+ Sbjct: 222 TVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRHL 281 Query: 257 PGIIKALNVSNAAAVALY 274 P +++LNVS A + L+ Sbjct: 282 PPGLESLNVSVATGILLH 299 >gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] Length = 318 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 13/182 (7%) Query: 109 AVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +HQGLAL+ L++ L A ++ LL+ LD++ DP N+GA++RS AF Sbjct: 137 GLHQGLALQVPEYQYAHPEDLMADAL-AGSSAPLLVALDNITDPRNLGAVIRSVAAFGGH 195 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R S +AV ++++GA +P NL L G Q +GL + L Sbjct: 196 GVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKKGAQIVGLDAGGDVSL 255 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKGL +E S+ + + +++LN S AA V L + F Sbjct: 256 DDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNASVAAGVVL----SEF 311 Query: 281 AK 282 A+ Sbjct: 312 AR 313 >gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] Length = 263 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 17/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPE-NLFLYGVHTVSAAL--NNPSRKIFQLL-ATKNALARLD 82 R +KK F Q H +P+ + + G + A+ +IF L AT + ++ Sbjct: 3 QRKFKKPGGFRQ---HAPRPKASSLVIGRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135 A + P+ VP + ++ + A HQG T + L V + L Sbjct: 60 QLAE-QYNIPINLVPVEKLNGLT--SANHQGCVAITGNINYLDLQDVISHVTEQGQTPLF 116 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D NIGAI RSAV II R + + KS++GALE I R+++L Sbjct: 117 LILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSL 176 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A+ +H G + I +++ L + +A+I+G+E KG+ P + + ++ H+ Sbjct: 177 LKAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIP 236 Query: 256 MPGIIKALNVSNAAAVALY 274 M G ++ NVS AA + LY Sbjct: 237 MAGNFESFNVSVAAGIILY 255 >gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] Length = 259 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVND 143 PVK V +D + G A HQG+ A ++ + N +++ D + D Sbjct: 62 IPVKQVREIKLDSMAGG-AAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIED 120 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQ 200 PHN+GAI+R+A A GII KR S S + + K+++GA +P R+ NL D L+ Sbjct: 121 PHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNLAAAVDDLK 180 Query: 201 KMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 K W + T G +D + P I L++G+EG G+ +E + L Sbjct: 181 KQGIWIYGTDGAGQNYSGADLRGP---------IGLVVGSEGFGMGRLMKEKCDMLLSLP 231 Query: 256 MPGIIKALNVSNAAAVALY 274 M G I +LN S AA + +Y Sbjct: 232 MAGKITSLNASVAAGIFMY 250 >gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152] gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152] Length = 248 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 10/190 (5%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHN 146 TVP + ++++ K + HQG + +P LL TL+A ++LD ++D N Sbjct: 53 TVPVEKLNRL-SKNSNHQGAVAQISPIDFYDLETLLDDTLEA-EKVPFFLILDQLSDVRN 110 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI+R+A +GII K S +A K+++GA +P ++ ++ DAL + + Sbjct: 111 FGAIIRTAECTGVNGIIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASN 170 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +T+ + + + N IA+I+G+E +G+ P + A L + G I++LNVS Sbjct: 171 IKTVAATEKTDSSIYDVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVS 230 Query: 267 NAAAVALYIT 276 A V LY T Sbjct: 231 VACGVFLYET 240 >gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 272 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 7/180 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV TV P+ +++ G VH+G +++ PL + T D +R ++ +++++ VND NI Sbjct: 76 PAPVYTVTPELAERVTGYH-VHRGALASMQRKPLPA-TADLLRTARRVVIMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ L+ + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGF 193 Query: 208 QTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K + L++ + D++AL+LGAEG GL + A + M + +LN Sbjct: 194 TLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSLN 253 >gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] Length = 250 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 103 FLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 162 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++ + G + ++ + + I LI+G EG+G+ +ET A Sbjct: 163 NLAKTMESLKEKGLWFVCADMGGEEMYDLNLTG-PIGLIIGNEGEGVSRLVKETCDFTAR 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 222 IPMNGDIDSLNASVAAGVLAY 242 >gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Desulforudis audaxviator MP104C] Length = 251 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 7/230 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVG 106 +YG + V AL R + ++L + A RL + P PV+ V +D++ Sbjct: 12 VIYGRNPVREALRG-GRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERPLLDRLTD 70 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 A HQG+A + T++ + ++ L++VL+ + DP N+GAILR+A A DG + Sbjct: 71 GGA-HQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAAGVDGAVV 129 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R + + AK+A+GA+E++P R++N+ L++ G +G D Sbjct: 130 PSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGPVSYWDAD 189 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G E GL + S+ + M G + +LN S AAA+ +Y Sbjct: 190 LGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIY 239 >gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 79/141 (56%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 99 FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + + + ++K I L++G+EG+G+ +E A Sbjct: 159 NLAKTIEELKQKGIWFVCADMNGTPMYDLDLKG-PIGLVIGSEGEGVSRLVKEKCDFTAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVMAY 238 >gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 262 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + LD + DPHN+GA+ R+A F GII T+ S S ++G LE IP+ + Sbjct: 118 IWLALDCLQDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQPP 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252 NL AL+ G +G S +++PL IK D+ LI +G E GLR T E + Sbjct: 178 NLARALELAKKSGVWVLGTSEHAQQPL-SSIKADRPWLIVIGNEEGGLRRLTLELCDEVC 236 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + G + +LNVS A + LY Sbjct: 237 TIPSQGAVGSLNVSVATGILLY 258 >gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 188 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++L+ V DPHN+GA LR+A ++ + S + + + G + +P+++I Sbjct: 41 LILLLEGVQDPHNLGACLRTASGAGVTALLAPMKGSCGITHTVRDVSCGGADEVPFLKIK 100 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N + L+K G Q IG S + L +ILG+EG GLR T + + Sbjct: 101 NTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGSEGWGLRKVTGDLCDQLVS 160 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + LNVS +A V LY Sbjct: 161 IPMAGKVDCLNVSVSAGVCLY 181 >gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] Length = 247 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPL----LSPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + L L RN S LL+VL +NDPHN+GAI+R+A A + DG+I Sbjct: 71 HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDGVILV 130 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +A + K+++GA+ H ++ +L L+ + GFQ I ++K + Sbjct: 131 EGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYTEVDF 190 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A I+G E KGL ++ + M G +++LNVS +A V LY Sbjct: 191 RIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLY 239 >gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] Length = 249 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD++ DPHN+GAI+R+A G+I K + +A +AK+++GAL + P +++ Sbjct: 102 FLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAAGLTATVAKTSAGALNYTPVAKVT 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + D +K I L++G EG+G+ +ET A Sbjct: 162 NLVKTMEELKEKGLWFVCADMDGDVMYRVNLKG-PIGLVIGNEGEGVGRLVKETCDMTAA 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 221 IPMKGDIDSLNASVAAGVLAY 241 >gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 233 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 14/231 (6%) Query: 49 LFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L + G ++V AL N P +K+ L L + + N FPV+ V D++ Sbjct: 4 LIMCGKNSVLDALQNNWPIQKVLLLHENNKHLFK---NVN----FPVEVVRRDKFDELTN 56 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG + L+++ N +L++VLDH+ DPHN+GA++RSA A II Sbjct: 57 EN--HQGFIALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIIL 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S ++ + K +SG I +IR+++++ + + + GF + D +I Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQI 174 Query: 225 KND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L++G EG G+ T ++ G +++LNVS A + L+ Sbjct: 175 NYPYKSVLVVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLF 225 >gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] Length = 209 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209 >gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +A+ A S D ++ ++ +++LD + DPHN+GAI+R+A G Sbjct: 64 GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R + +A +A++++GAL + P +++NLT ++ + G + D +K + Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCADMDGQKMYQ 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ I +++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 184 LNLRG-PIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSY 235 >gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 358 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 23/198 (11%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 Q +D + G + VHQG+ +E +PL D ++ QL +VL+ + DP N+GA++ Sbjct: 141 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 199 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D +IT++R S + V++K+++GA+E + +L LQ G+ +G Sbjct: 200 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVG 259 Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPK----TQETATSMAHLHM 256 +S SK P+ ++ + L+LG+EG GL + Q T + H+ Sbjct: 260 TVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRHL 319 Query: 257 PGIIKALNVSNAAAVALY 274 P +++LNVS A + L+ Sbjct: 320 PPGLESLNVSVATGILLH 337 >gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 246 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN+GAI+R+A G+I KR + + +AK+++GAL + P ++++ Sbjct: 98 FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL++ ++++ G + D Q + I L++G EG G+ +E A Sbjct: 158 NLSNTMEELKERGLWFVCADMDGDMMYRQNLTG-PIGLVIGNEGSGVSRLVKERCDYTAS 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 217 IPMNGDIDSLNASVAAGVLAY 237 >gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 244 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 6/184 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +PV V P+ + K+ + ++ + + P + + ++VLD V DP N+G I Sbjct: 62 YPVYEVTPEILKKL--QSSISGTWIMAVCRM--PQYNTADYGERVIVLDDVQDPGNVGTI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA++F D ++ + + + +S GAL H+P IR + D LQ++ G + + Sbjct: 118 IRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIR-GEVVDMLQELKRKGIRIL 176 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + PL + +++ AL+ G EG G+ A + ++ M ++LNV+ AA Sbjct: 177 ATSLRNATPLHEIAASERFALVFGNEGSGVSEDVLYLADTHVYIEMD-TFESLNVAVAAG 235 Query: 271 VALY 274 + +Y Sbjct: 236 ICMY 239 >gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 280 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 5/188 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + I+K+ G + P P + + S+ + VL+ + D +N+GA+ Sbjct: 88 PIFVLSDNQIEKLTGYRMTRGIICAMRRPQARPLEEILSTSKYIAVLEDLVDVNNVGAVF 147 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQ 208 RSA A + D +I T + + + S + + + G + ++P+ R+ T D ++K+ + F Sbjct: 148 RSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKLKAHSFT 207 Query: 209 TIGLS-SDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 T L+ +DS PL ++ +K K AL G+EG GL KT E + M + +LNV+ Sbjct: 208 TCALALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDSLNVA 267 Query: 267 NAAAVALY 274 ++AVA + Sbjct: 268 ASSAVAFW 275 >gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 249 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPL--- 121 K+F L ++ R H +K V + +D++ GK HQG+ TA Sbjct: 28 KLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQLSETGK---HQGVIAMTAAYNYA 84 Query: 122 -LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + L A R L++LD++ DPHN+GAI+R+A G+I K + +A +A Sbjct: 85 EVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAVGLTATVA 144 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++++GAL + P +++NL ++ + G + + + ++K I L++G EG Sbjct: 145 RTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCADMGGTQMYDLDLKG-AIGLVIGNEG 203 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ +E +A + M G I +LN S AA V Y Sbjct: 204 DGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAY 240 >gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] Length = 237 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 13/196 (6%) Query: 94 KTVPPQTIDK----IVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVND 143 K +P + +D+ + K HQG+A + +++ + S L+++LD + D Sbjct: 39 KQIPVEILDRHKMTSLVKSDRHQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVD 98 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAILR+ A DG+I K S +A +AK + GA++ + ++NL+ ++ + Sbjct: 99 PHNLGAILRTCDAVGADGVIFKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLK 158 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ +G + + K + +K D L++G EGKG+ + HL M G I + Sbjct: 159 KRGYWVVGTAMEGKD--YRSLKYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISS 216 Query: 263 LNVSNAAAVALYITQN 278 LN S + + LY N Sbjct: 217 LNASVSTGILLYEIYN 232 >gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 24/199 (12%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 Q +D + G + VHQG+ +E +PL D ++ QL +VL+ + DP N+GA++ Sbjct: 103 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 161 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK---------M 202 RSA D +IT++R S + V++K+++GA+E + +L LQ Sbjct: 162 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAPAGGGSWW 221 Query: 203 HSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPK----TQETATSMAHLH 255 WG +S SK P+ + + + L+LG+EG GL + Q T + H Sbjct: 222 AQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRH 281 Query: 256 MPGIIKALNVSNAAAVALY 274 +P +++LNVS A + L+ Sbjct: 282 LPPGLESLNVSVATGILLH 300 >gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 15/247 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ ++I ++L K+ + L + A L F PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGKEIDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ +P+ + P L + LL++LD V D N GAI R+ Sbjct: 63 ITKKN--HQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240 Query: 275 ITQNHFA 281 + Q FA Sbjct: 241 VKQRGFA 247 >gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] Length = 197 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 2/146 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188 + + +++LD V DPHN+GA +R+A D +I K +P V++ S GA + Sbjct: 44 KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDTVMSVSCGGA-SNTA 102 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ N+ ++K+ G G S + + L +AL++G+EGKG+R T+E Sbjct: 103 IFRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGSEGKGMRRLTEEKC 162 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + LNVS A V LY Sbjct: 163 DFLLTIPMGGTVPCLNVSVATGVCLY 188 >gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] Length = 244 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 15/246 (6%) Query: 47 ENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E L ++G+ V AL P + + + T N +L +A H + VPP+ + Sbjct: 3 EELHIFGIRAVLEALEAGKTPEKILVRKDLTGNLFRQLQ-EAAKKHNMSLTVVPPERFRR 61 Query: 104 IVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ +P L+ TL A + L ++LD V+D N+GAI+R+A Sbjct: 62 FESRN--HQGVVAVLSPITYREHTALIDETL-ARDKAPLFLLLDGVSDVRNLGAIIRTAE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+ S SA K+++GA ++P R +L D + + + G + + + Sbjct: 119 CAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + +ALI+G+E +G+ P + A L M G I++LNVS A V L+ Sbjct: 179 AESTLYEADLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFE 238 Query: 276 TQNHFA 281 Q A Sbjct: 239 AQRQRA 244 >gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 249 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 15/245 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106 ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++I Sbjct: 1 MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + L ++LD + D N GAI R+ Sbjct: 60 KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277 + D + +I+GAE G+ + + + G I++LNVS AA + +Y + Q Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237 Query: 278 NHFAK 282 F + Sbjct: 238 RGFTE 242 >gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] Length = 248 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + +LD V RNS LL+VL ++DPHNIGAI+R+A A + D ++ Sbjct: 72 HQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLV 131 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +AV+ K+++GAL H+ ++ +L AL+ +H Q I D++ Sbjct: 132 EGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDAELNYNDADM 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG EG G+ P+ + + + M G +++LNVS A V LY Sbjct: 192 KRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLY 240 >gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 225 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++ G +++ A+ N P +KI+ L ++ + NL + + V V +DK+ K Sbjct: 4 YICGKNSLLDAIKNNVPIKKIY--------LTKIVPNLNL-NTYQVHIVEKSFLDKL-AK 53 Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG E + ++++ N + ++VLDH+ D HN+GAI+RSA A II Sbjct: 54 GINHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILP 113 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI 224 K + + + +SG I +I +++L +K+ F + S + KPL+Q + Sbjct: 114 KDNCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIV 173 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 174 FNQPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella tularensis subsp. holarctica FSC200] gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 218 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209 >gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 22/212 (10%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV-------RN 131 PV+T+ + TI V KE + HQG+ + A T+D + Sbjct: 34 PVRTIAREARKTDTIINYVSKERLDQLSETHAHQGVIAQVAAYDYSTVDEILARAEEKGE 93 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++LD+V DPHN+GAI+R+A G+I KR + ++ +AK+++GA+ + P + Sbjct: 94 APFLIILDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAK 153 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++N+ ++++ G + + + ++ + L++G EG+G+ +E Sbjct: 154 VTNIVRTIEELKEKGIWFVCADMGGETMYDLDLTG-PMGLVIGNEGEGVSRLVREACDFT 212 Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 A + M G I +LN S AA V Y I + AK Sbjct: 213 ASIPMKGDIDSLNASVAAGVLAYEIVRQRLAK 244 >gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] Length = 255 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 15/248 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ R+I ++L K+ + L + L + PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + L P L + L ++LD + D N GAI R+ Sbjct: 63 ITRKN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240 Query: 275 ITQNHFAK 282 + Q F + Sbjct: 241 VKQRGFTE 248 >gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii L2-6] Length = 268 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 15/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + + M ++ + QP N +YG + V+ L + S LLA A A + + Sbjct: 2 EERNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAM 61 Query: 88 PHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138 VK V P + + G E+ HQG+A + + T++ + + L++ Sbjct: 62 AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLS 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ G D L + IAL+LG+EG G+ ++ + L M Sbjct: 181 IRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTA 239 Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265 >gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] Length = 246 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ + I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAVQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG +A +A T D V + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL D LQ + S GF + + Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 11/237 (4%) Query: 47 ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ R + + VP + +D+I Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQI 63 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG +A A + D ++ ++ L++LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NLT ++ + G + + Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +K I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 LMYKMNLKG-SIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAY 238 >gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 244 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 25/180 (13%) Query: 111 HQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + +P+ L T++ + + ++LD +ND N GAI+R+A D II Sbjct: 67 HQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVDAII 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------- 214 ++ + +A K+++GA+ +IP +++++ DA+ + S G QT+ + Sbjct: 127 IPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLIYNI 186 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D KKP A+I+G E KG+ P +T A L M G I +LNVS A LY Sbjct: 187 DFKKPT---------AIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLY 237 >gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] Length = 233 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG L +D ++ N + +++LDH++DPHN GAI+R+A A II K Sbjct: 60 HQGYLLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227 S ++ + K +SG + I++SN+ +++K+ WGF L ++ P + Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYAG 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G E KG+ ++ G ++++NVS A + L+ Sbjct: 180 NCALVVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLF 226 >gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] Length = 252 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 5/143 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+R+A G+I KR + +A +AK+++GA+ + P +++ Sbjct: 105 FLILLDDIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 164 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NLT ++++ G F + +S L I L++G EG+G+ +ET + Sbjct: 165 NLTKTMKELKEKGLWFVCADMGGESMYKLNL---TGPIGLVIGNEGEGVSRLVKETCDFV 221 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M G I +LN S A V Y Sbjct: 222 ASIPMKGDIDSLNASVATGVLAY 244 >gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] Length = 251 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 75/140 (53%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD + DPHNIGAI R+A F GI+ TK S +A + ASG +E +P+ + Sbjct: 101 LWLALDCIQDPHNIGAIFRTAAFFGVRGIVLTKDRSAPINATVYDVASGGMEAVPFAVET 160 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ ++ + G +G S +++ + ++ +++G E KGLR T E + Sbjct: 161 NLSRSMTQAKETGVWIMGTSEHAEEDVSVYSQDRPWMVVIGNEEKGLRRLTLEQCDVVTR 220 Query: 254 LHMPGIIKALNVSNAAAVAL 273 L GI+ +LN S AA + + Sbjct: 221 LTPTGIVDSLNASVAAGIMI 240 >gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] Length = 263 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +A+ T D ++ ++ +++LD + DPHN+G+I+R+A GII Sbjct: 85 HQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGII 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++NL A+ + G G + Q Sbjct: 145 IPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMSGESYCFQT 204 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 205 NFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMY 255 >gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] Length = 250 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +LD + DPHN+GAI+R+A G+I KR + +AV+AK+++GAL + P +++ Sbjct: 103 FIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVT 162 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + + + +K I L++G+EG G+ +E +A Sbjct: 163 NLAATIEELKEKGLWFVCADMNGELMYRLNLKG-PIGLVIGSEGDGVGRLVREKCDMVAS 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 222 IPMKGDIDSLNASVAAGVLAY 242 >gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa] gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa] Length = 571 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 111 HQGLALETAPLLS---PTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQGL L+ +PL LDAV L + LD V DP N+GAI+RSA F G++ Sbjct: 349 HQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAIIRSAYFFGASGVV 408 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE + N+ L G++ +G S SK L + Sbjct: 409 LCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLGGSVSSKAVSLSE 468 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L+LG+EG GLRP + + T + + +PG I Sbjct: 469 VLPGQPTILVLGSEGTGLRPLVERSCTQL--VRIPGNI 504 >gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] Length = 250 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +LD++ DPHN+GAI+R+A G+I KR + +A +A++++GAL + P +++ Sbjct: 102 FIFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVT 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + D + + I L++G EG+G+ +ET A Sbjct: 162 NLVKTMEELKEKGLWFVCADMDGESMYRLNLTG-PIGLVIGNEGEGVGRLVKETCDFAAG 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 221 IPMKGNIDSLNASVAAGVLAY 241 >gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1] gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1] Length = 248 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP +D++ +HQG+AL+ P D + + + LL+ LD++ DP N+G Sbjct: 56 VPRSDLDRL-SANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLG 114 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ S G Q Sbjct: 115 AVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQ 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L++ + + +++G+EGKGL +E ++ + M G +++LN S A Sbjct: 175 VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVA 234 Query: 269 AAVAL 273 A V L Sbjct: 235 AGVVL 239 >gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens ATCC 13124] gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] Length = 289 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 VK V + +D ++ + HQG+ + P T++ + +N +++LD + DPH Sbjct: 93 VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A GII KR + + + K++ GA+EH+ +++N+ +A++++ + Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211 Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + E K +I+G+EG+G+ T++ + + M G I +LN Sbjct: 212 NLWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270 Query: 265 VSNAAAVALY 274 S A + +Y Sbjct: 271 ASVAGGIMMY 280 >gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] Length = 246 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN+GAI+R+A G+I KR + + +AK+++GAL + P ++++ Sbjct: 98 FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ ++++ G + D Q + I L++G EG G+ +E A Sbjct: 158 NLSKTMEELKERGLWFVCADMDGDMMYRQNLTG-PIGLVIGNEGSGVSRLVKERCDYTAS 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 217 IPMNGDIDSLNASVAAGVLAY 237 >gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 255 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 11/233 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ V A+N+ K+F K L R VP + ++++ Sbjct: 17 IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLSKNN 76 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ T++ A N+ L ++LD ++D N GAI+R+A DG Sbjct: 77 --HQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P ++ ++ DA+ + + G + + + Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+++G+E +G+ P + A +A L + G I++LNVS A AV LY Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLY 247 >gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 228 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID----KI 104 + +YG V L S KI Q+L K + D F VP +D + Sbjct: 1 MVVYGKRVVEYILTKHSDKIQQVLLAK------EIDKKQFRAFARLNVPLVRVDSKKAQS 54 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + + HQG LE APL+ ++ ++VL ++D NIGA+ R+A DGI+ Sbjct: 55 LARGGNHQGYLLEIAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVI 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223 + VL +++SGA+ +P+ + N D ++ GF+ G S K +E Sbjct: 115 CGLKDFKQEGVL-RASSGAMLDMPFCLVYNALDVANELKFAGFRLYG---ASLKGVESNG 170 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + K AL LGAEG GL K + + +LNVS A A+ Sbjct: 171 VTQGKKALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAI 218 >gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum K10] Length = 247 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 99 FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ ++++ G + + +K I L++G EG+G+ +E +A Sbjct: 159 NLSATIEELKERGLWFVCADMGGESMYRLNLKG-PIGLVIGNEGEGVSRLVKEKCDMVAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] Length = 233 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG L +D ++ N + +++LDH++DPHN GAI+R+A A II K Sbjct: 60 HQGYLLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227 S ++ + K +SG + I++SN+ +++K+ WGF L ++ P + Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYTG 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G E KG+ ++ G ++++NVS A + L+ Sbjct: 180 NCALVVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLF 226 >gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018] gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018] gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 229 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG L+ + + ++ ++VLD V D NIGAI R+A + DGII + + Sbjct: 61 HQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKTI 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---KKPLEQEIKND 227 + S ++ ++++GAL +P+ D ++ GF IG + D KK + E K+D Sbjct: 121 NNSGIV-RTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIE-KSD 178 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K+AL LG+EG+G+ PK + + M +LNVS AA + +Y Sbjct: 179 KVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIY 225 >gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 255 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + L P L + L ++LD + D N GAI R+ Sbjct: 63 ITRKN--HQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240 Query: 275 ITQNHFAK 282 + Q F + Sbjct: 241 VKQRGFTE 248 >gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 266 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 16/254 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNN-PSRKIFQLLATKNALARLDWDA 85 R Y ++ Q+ R E LFL G+ TV+ N P + L + + D+ Sbjct: 15 RKYTRLHQKKQRER-----EGLFLAEGLRTVTELCRNLPDNDMLVALLIRETQSD---DS 66 Query: 86 NLPHPFPVKTVPPQTIDKI-VGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 H F K + + + + QG+ P P + + + ++VLD V Sbjct: 67 GFAHAFSGKVFSISDKECLQLAQTTTSQGVFGVFRQQPDPEPFGEGKKGASFIVVLDDVQ 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+AV F DG+I + +A +S++G++ IP+ + ++ D L ++ Sbjct: 127 DPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGVEHVADELNRL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---I 259 + G+ I S + K E + +K L++G E G+ + Q + + + G Sbjct: 187 KALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLVRIPHAGKKAR 246 Query: 260 IKALNVSNAAAVAL 273 +++LN S +AA+ + Sbjct: 247 VESLNASVSAAILI 260 >gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium phytofermentans ISDg] Length = 248 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 10/185 (5%) Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +E HQG+ A +D A + L++LD + DPHN+GA+LR+A Sbjct: 65 EEGKHQGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQAGA 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR + +A +AK ++GA+ + P +++NL ++++ G + + Sbjct: 125 HGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCADMSGEVM 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277 Q + I L++G+EG+G+ +E + + M G I +LN S A V Y + Q Sbjct: 185 YRQNLTG-PIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQ 243 Query: 278 NHFAK 282 FAK Sbjct: 244 RSFAK 248 >gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5] gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum indicum S5] Length = 228 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 7/194 (3%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H P+K + +D G+ +QG+ A+ A L + ++ +++ D V DP N+ Sbjct: 38 HDIPIKILNRDKMDSQFGQH--NQGVGAIVGAIATQDPLTFLVDASCIVLADRVQDPGNL 95 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA AF D +IT + +P V+ K+++G + H R+ N ++K GF Sbjct: 96 GAIIRSAAAFGADVVITEHQSAPISDTVI-KASAGNIYHTRVGRVVNAARYVEKAKENGF 154 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+ L + + ++ + KI L++G EG GL+ A A + M +++LN S Sbjct: 155 WTVALDGEGESLFRLKL-DGKILLMVGNEGSGLKDILLRHADWRASIPMRPGVESLNASA 213 Query: 268 AAAVALY--ITQNH 279 A A+ALY QNH Sbjct: 214 ATAIALYEIARQNH 227 >gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] Length = 248 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++N L++LD V DP N+G +LRSAVAF DG+I + + +S GA+ +P Sbjct: 100 IKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLP 159 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + NL +A+ + G + G S + +PL + + K+A ILG EG G+ + Sbjct: 160 ILN-QNLEEAVTSLKEQGVRIYGTSLQNGRPLNEIEETMKMAFILGNEGSGVSKELLSLT 218 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M I++LNVS A ++ +Y Sbjct: 219 DGNIFIEMSENIESLNVSIAGSIIMY 244 >gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens str. 13] gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str. 13] gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] Length = 289 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 VK V + +D ++ + HQG+ + P T++ + +N +++LD + DPH Sbjct: 93 VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A GII KR + + + K++ GA+EH+ +++N+ +A++++ + Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211 Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + E K +I+G+EG+G+ T++ + + M G I +LN Sbjct: 212 NVWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270 Query: 265 VSNAAAVALY 274 S A + +Y Sbjct: 271 ASVAGGIMMY 280 >gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 247 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V AL ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEALQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + A L P L + ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans SSM1] gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans SSM1] Length = 223 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 11/195 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNI 147 P + V DK K A Q +A E D V +L VLD + DP N Sbjct: 35 PFEIVSKSEFDKKFSKHA--QSVAAEV-DFRYYDFDEVYEDIVLEENVAVLDKIQDPQNF 91 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+ F + I K S S + + K+++G++ + ++++N+ L K+ GF Sbjct: 92 GAIVRAGHCFGINYFIIPKHGSSSVTPAVFKASAGSIIYSKIVKVTNIAKTLDKLLDAGF 151 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + KK L + + +ILG+EG+G+R + A + M G I +LNVS Sbjct: 152 FITAADINGKKELSEIKTTKRNCIILGSEGEGIRSNVLKRAHITFKIEMTGKIDSLNVSQ 211 Query: 268 AAAVALYITQNHFAK 282 +AA+ Y HF K Sbjct: 212 SAAITFY----HFFK 222 >gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101] gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens SM101] gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] Length = 289 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145 VK V + +D ++ + HQG+ + P T++ + +N +++LD + DPH Sbjct: 93 VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I+R+A GII KR + + + K++ GA+EH+ +++N+ +A++++ + Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211 Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + E K +I+G+EG+G+ T++ + + M G I +LN Sbjct: 212 NVWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270 Query: 265 VSNAAAVALY 274 S A + +Y Sbjct: 271 ASVAGGIMMY 280 >gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 298 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +AL T D + +++ ++VLD + DPHN+G+I+R+A GII Sbjct: 119 HQGVIALVTPFKYCQIADMLNDAKEKGEDPFIIVLDEIEDPHNLGSIIRTAELCGVHGII 178 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + ++ + K + GA+EH+ +++N+ A+ ++ G G ++ Q Sbjct: 179 IPKRRNVGITSTVYKCSVGAIEHMKIAKVTNINSAIDELKESGLWVYGADIAGEEYSYQV 238 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N A+++G+EG+G+ T + + + M G I +LN S A + +Y Sbjct: 239 DFNGPCAMVIGSEGRGISKLTLKKCDKLVKIPMVGKINSLNASVAGGIMMY 289 >gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 99 FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT A++ + G + + +K I L++G EG+G+ +E A Sbjct: 159 NLTAAMEDLKKKGMWFVCADMGGDIMYKVNLKG-PIGLVVGNEGEGVGKLVREHCDMTAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 262 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 78/142 (54%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD++ DP N+G ILR+A GII +K + + +S G++ +P++ + + Sbjct: 113 LLVLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVED 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L +A+ K+ + G T D K ++E K A ++G EG GLR + + A + + Sbjct: 173 LKEAIAKVKAHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRI 232 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 M G +++LN + A +V ++ T Sbjct: 233 PMQGQVESLNAAIATSVLMFET 254 >gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus] gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a [Rattus norvegicus] Length = 320 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 28/251 (11%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-----PQTIDKIV 105 L+GV AL R + +LL A L + +P Q +D + Sbjct: 50 LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQKLDALC 109 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158 G + VHQG+ +E + L D ++ QL +VL+ + DP N+GA++RSA Sbjct: 110 GYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSAYFLG 168 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG------- 211 D +IT++R S + V++K+++GA+E + +L LQ G+ +G Sbjct: 169 VDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTVGCPGP 228 Query: 212 -LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKAL 263 +S SK P+ + I + L+LG EG GL T T + H+P +++L Sbjct: 229 EISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPPGLESL 288 Query: 264 NVSNAAAVALY 274 NVS A + L+ Sbjct: 289 NVSVATGILLH 299 >gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 253 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144 P++TVP Q ++ K HQG+ +P+ L P + LL++LD + D Sbjct: 52 PIQTVPKQKFYQLKNKN--HQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDV 109 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G+I+R++ D II K+Y+ + K++SGAL +P + N+ + ++ + + Sbjct: 110 RNFGSIIRTSACVGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMN 169 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + S + ALILG E KG+ PK E + A + I +LN Sbjct: 170 SGLKIVSATEKSNIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLN 229 Query: 265 VSNAAAVALY 274 VS A V LY Sbjct: 230 VSVACGVILY 239 >gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium dendrobatidis JAM81] Length = 354 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 139/342 (40%), Gaps = 113/342 (33%) Query: 41 RHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLA-------------------------- 73 +H+++P+N+ +LYG V A+ RKI LL Sbjct: 12 QHSTRPKNVEYLYGASVVIPAMEFGVRKIKTLLVKEDQRFGGMKIRGNGEAILSSKILPK 71 Query: 74 ------TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET-AP---- 120 +++ A LD+ L + PVK VP +D++ G HQGL L T AP Sbjct: 72 ISSADMGQDSRALLDYAVALANQREIPVKEVPVSHLDRLAGNRP-HQGLVLATLAPKVTH 130 Query: 121 ---LLSPTLDA--------------------------VRNSQLLMVLDHVNDPHNIGAIL 151 L + LDA R + LD + DP N+GAIL Sbjct: 131 LHALGNCDLDANDVDFEKNVYEVDAGGDGILRLKTREDRKYPFWIALDQIVDPQNLGAIL 190 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F DG++ T+R S S + +K+++GA+E +P NL LQ+ G+Q +G Sbjct: 191 RSAYYFGVDGVVVTERDSAPFSPISSKASAGAMEAMPLYSTVNLGKLLQESAINGWQILG 250 Query: 212 LSSDSKK----PL-------EQEIKND----------------KIALILGAEGKGLRPKT 244 ++++KK PL + E+ ND L+LG EG G+R Sbjct: 251 TNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSAPTILVLGNEGHGMR--- 307 Query: 245 QETATSMAHLHM--------PGI----IKALNVSNAAAVALY 274 + H H+ P I +LNVS AA + L+ Sbjct: 308 -TLVSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLH 348 >gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] Length = 246 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 15/246 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPF-PVKTVPPQTIDK 103 +N ++G+ V A+ ++I ++L K+ + L + A L F PV+ VP + ID+ Sbjct: 4 KNEMIFGIRAVIEAIE-AGKEIDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERIDR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ +P+ L P L + L ++LD + D N GAI R+ Sbjct: 63 ITRKN--HQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R +N+ ++ + GF+ I + Sbjct: 121 AGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKA 240 Query: 275 ITQNHF 280 I Q F Sbjct: 241 IEQRGF 246 >gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] Length = 305 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD + DPHN+GAI+R+A G+I T+ + +A +AK+++GA+ + P +++ Sbjct: 159 FLFLLDGIEDPHNLGAIIRTANLAGAHGVIITRHRAVGLTATVAKASAGAINYTPVAKVT 218 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + ++ G + + D + + ++K I L++G EG+G+ +E A Sbjct: 219 NLGATIDELKKKGMWFVCAAMDGTRMYDLDLKG-PIGLVIGNEGEGVSRLVREKCDFTAS 277 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 278 IPMKGDIDSLNASVAAGVLAY 298 >gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4] Length = 322 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP +D++ +HQG+AL+ P D + + + LL+ LD++ DP N+G Sbjct: 130 VPRTDLDRL-SANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLG 188 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ S G Q Sbjct: 189 AVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQ 248 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + L++ + + +++G+EGKGL +E ++ + M G +++LN S A Sbjct: 249 VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVA 308 Query: 269 AAVAL 273 A V L Sbjct: 309 AGVVL 313 >gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] Length = 247 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V AL ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEALQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + A L P L + ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B] gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B] Length = 333 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ L+ LD V +PHN+GAI+RS F GI+ T+ +S A++A G +EH+ Sbjct: 183 KSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTE-AGLLQSGAAARTAEGGMEHVEG 241 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 IR LTDALQ G+ I SS + L + ++ ++ G E G+ A Sbjct: 242 IRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRAD 301 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + G++++LNVS AA++ L Sbjct: 302 IGVQIPGTGLVESLNVSVAASLIL 325 >gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] Length = 292 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +H+G LA P P ++ + + +L+ + D N+GAI RSA A + D ++ T R Sbjct: 118 LHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNVGAIFRSAAALNVDAVLVTPRC 177 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---K 225 + + + G + +P+ R+ + LQ +H GF++ L+ + +E+ + Sbjct: 178 ADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGFKSAALALEEDSLTLEELSARR 237 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++K+ALILG EG GL P+T + M + +LNV+ A+AVA + T+ Sbjct: 238 DEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLNVAAASAVAFWETR 289 >gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium johnsoniae UW101] Length = 244 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +P+ L + A + L ++LD ++D N GAI+R+A +GII Sbjct: 67 HQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVNGII 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + K+++GA+ ++P ++ ++ DA+ + G +T+ + + + + Sbjct: 127 VQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNIYDL 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY Sbjct: 187 SLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLY 237 >gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 278 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 4/180 (2%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + +++G + LA P + V ++ L+VL+ VNDP N+GAI R+ A Sbjct: 93 DVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGARTLVVLEGVNDPENLGAIFRNCAALG 152 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGLSS 214 DG++ + + + G + +P+ + + +L + GF+TI L+ Sbjct: 153 VDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGTPTTWQRSLDDLRERGFRTIALTP 212 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ PL + + +K+A +LGAEG GL A + M +LNV+ AAAVA Y Sbjct: 213 AAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACDVRAAIPMTDGTDSLNVATAAAVAFY 272 >gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 245 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +P+ T +AV + L ++LD + D N GAI+R+AV D II Sbjct: 67 HQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDAII 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + K+++GA+ +IP ++ ++ DAL + G Q + + ++ + Sbjct: 127 IPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIYDL 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 187 DYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLY 237 >gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] Length = 244 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T+ LD + ++LD + DPHN+G+I+R+A A +I Sbjct: 65 HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGAHAVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S + ++AK+++GA+E++P +++N+ + ++ + G + D +Q Sbjct: 125 IPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIAAVDMDGHTFYQQN 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G+EG+G+ ++ + M G + +LN S A + LY Sbjct: 185 L-GGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLY 234 >gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] Length = 242 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 8/194 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNI 147 ++ VP + I++ G + QG+ +P+ DA + + ++LDH+ DP N+ Sbjct: 49 IQRVPRKKIEETAGTKKT-QGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNV 107 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A GII + S + V+ K+++GA+ ++P ++ N+ + K G Sbjct: 108 GNIIRTAEVLGSSGIIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGG 167 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I + KP+ + ++LG+EGKG+ E + + + M G I +LNVS Sbjct: 168 WVISVEKGG-KPIHKVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSA 226 Query: 268 AAAVALY-ITQNHF 280 AAA++L+ +++ F Sbjct: 227 AAAISLWEVSKQKF 240 >gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] Length = 247 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 13/195 (6%) Query: 89 HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLD 139 H + V + +D++ GK HQG+ A T+D + + S +++LD Sbjct: 48 HDTVINYVKKERLDQMSETGK---HQGVIGYLAAYEYATVDEILDKAREKGESPFVILLD 104 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAI+R+A G+I K + +A +AK+++GAL + P +++N++ + Sbjct: 105 DIEDPHNLGAIIRTANLAGAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTI 164 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +++ G + + ++K I L++G EGKG+ +E +A + M G Sbjct: 165 EELKKEGMWFVCADMGGTTMYDLDLKG-SIGLVIGNEGKGVSRLVKEKCDFVASIPMFGD 223 Query: 260 IKALNVSNAAAVALY 274 I +LN S A V Y Sbjct: 224 IDSLNASVATGVLAY 238 >gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] Length = 246 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 15/237 (6%) Query: 50 FLYGVHTVSAALN--NPSRKIF---QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++GV +V+ +N P K+F +L +A + +A PV VP +++I Sbjct: 5 FVFGVQSVTETINAGKPIDKLFIQRELGRNSPKVAYILEEAK-KREVPVAKVPLDKLNRI 63 Query: 105 VGKEAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG+ A+ PL + P L + L+++LD + D N GAI R+A Sbjct: 64 TRKN--HQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAECA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 I+ R S S+ K++SGAL ++P R +NL ++ + G Q + + + Sbjct: 122 GIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEKTS 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A+++G+E G+ A +A + + G I +LNVS A AV +Y Sbjct: 182 ETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVY 238 >gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] Length = 257 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRN 131 AT+ ALA+ A+L +P PV P +K+ G ++ L P P L D+ R Sbjct: 55 ATEAALAKTPALASL-NPMPVA---PHVAEKLAGTKSSQGVFVLFETPQTDPALLDSARR 110 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ L+ V DP N+G +LRSA AF D ++ + S +S+ GA +P + Sbjct: 111 ---ILALEGVQDPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVH 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETAT 249 NL L ++ G + + +PL++E ++ + +++G+EG+GL +T + Sbjct: 168 TENLPGTLHRLRERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++LN A +V L+ HF Sbjct: 228 AAVRIPMTDRVESLNAGVAGSVLLW----HF 254 >gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 262 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 77/142 (54%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD++ DP N+G ILR+A GII +K + + +S G++ +P++ + + Sbjct: 113 LLVLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVED 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L +A+ K+ + G T D K ++E K A ++G EG GLR + A + + Sbjct: 173 LKEAIAKVKAHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRI 232 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 M G +++LN + A +V ++ T Sbjct: 233 PMQGQVESLNAAIATSVLMFET 254 >gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4] Length = 247 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 20/250 (8%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 + N+K R + + G H + AL + +LL ++ WD N+P Sbjct: 3 EVINKKERIKTN--TFMIEGFHLIEEALK-VDGVVEELLVVEDITLPKSWDVNVPM---- 55 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + I+K + QG+ L+ ++ + LL LD V DP NIG ++R+ Sbjct: 56 -TLLKRGIEKELTDTEQPQGV-FAICRQLNQNVELEGTAYLL--LDGVQDPGNIGTMIRT 111 Query: 154 AVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 A A DG+I T Y+P + +SA G+ H+P + NL + +Q++H GF Sbjct: 112 ADAAGFDGVIMGEGTVDPYNPK----VLRSAQGSHFHLPIVN-KNLVEVVQELHDNGFDV 166 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G S + + + + K ALI+G EG G++ T ++ + G ++LNV+ AA Sbjct: 167 FGTSLQNGEDYREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAA 226 Query: 270 AVALYITQNH 279 V +Y Q Sbjct: 227 GVLMYWGQQQ 236 >gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 292 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 99/194 (51%), Gaps = 6/194 (3%) Query: 89 HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 HP P + ++++ G +H+G LA P P ++ + + +L+ + D N Sbjct: 97 HPDTPAYVGSEEQLEQVTGFH-LHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTN 155 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA A + D ++ T R + + + G + +P+ R+ + LQ +H G Sbjct: 156 VGAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELG 215 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F++ L+ + +E+ +++K+ALILG EG GL P+T + M + +L Sbjct: 216 FKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSL 275 Query: 264 NVSNAAAVALYITQ 277 NV+ A+AVA + T+ Sbjct: 276 NVAAASAVAFWETR 289 >gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S] Length = 252 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W + Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKDD 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + ++ V +A P + + +LL+V D V DP N+ Sbjct: 68 YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ +NL D + + G Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense DSM 16994] gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense DSM 16994] Length = 225 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 10/228 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG V A+ +I ++L L + ++ + + F +K +P + +V K Sbjct: 1 MIIYGKQPVYYAIERHRERI-KVLYLAKELDKKEYSSLMKMGFEIKRIPEKAAQSMV-KG 58 Query: 109 AVHQGLALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG E P SP L + ++VL + D NIG+++RSA A ++ + Sbjct: 59 GNHQGFIAEISQVVPYASPFL---KKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVIS 115 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 P+ A++ +++SGA +P + I N+ D L ++ GFQ G D E Sbjct: 116 GIKDPNLEAMI-RTSSGAALDLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFA 174 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ L+LG EG+GL + Q++ + M +LNV A A+ + Sbjct: 175 AKRV-LVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM 221 >gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] Length = 246 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 99 FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT ++ + G + + +K I L++G EG+G+ +E +A Sbjct: 159 NLTATMEDLKKKGMWFVCADMGGELMYRLNLKG-PIGLVIGNEGEGVGKLVKEHCDMVAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] Length = 246 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I+++ Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRMTR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L+P L + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S S +A K+++GAL +P R NL + LQ + + GF + + Sbjct: 124 DAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA V +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIY 238 >gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] Length = 245 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 13/191 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145 ++ V + +D++ K HQG+ A + L+A R + +LD + DPH Sbjct: 52 IRYVDREILDRL-SKTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A G+I KR + +A +AK+++GAL + P +++NL+ ++++ Sbjct: 111 NLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKE 170 Query: 206 G--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G F + ++ L I L++G EG+G+ +E +A + M G I +L Sbjct: 171 GLWFVCADMGGETMYNLNL---TGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSL 227 Query: 264 NVSNAAAVALY 274 N S AA V Y Sbjct: 228 NASVAAGVLAY 238 >gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 245 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 12/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHP-FPVKTVPPQTIDK 103 E ++G+ TV A+++ + I ++ K+ L + + NL + + VP + ++K Sbjct: 3 ETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLNK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ +P+ +L+ V +SQ L ++LD + D N GAI+R+A Sbjct: 62 L-SKNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII ++ S +A K+++GA+ +IP +++++ DA+ + ++ + I + + Sbjct: 121 CGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEKT 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IA+I+G E KG+ ++ A L M G I +LNVS A LY Sbjct: 181 DDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLY 238 >gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 372 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LDHV D N GAI+RSA +I S K+++GA+ H+P Sbjct: 218 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 277 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ NL A+ ++ GF IG S +++ + K+ LI+G+E G+ Q+ Sbjct: 278 VQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCD 337 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + L G I++LNV+ AA V Y Sbjct: 338 FICKLPQRGRIESLNVAQAATVMCY 362 >gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] Length = 249 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103 +N ++GV V A+ ++I ++L K+ + L + A L F PV+ VP + I++ Sbjct: 4 KNEMIFGVRAVIEAIQ-AGKEIDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ +P+ + P L + LL++LD + D N GAI R+ Sbjct: 63 ITKKN--HQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + +I+GAE G+ + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEA 240 Query: 275 ITQNHFAK 282 + Q F + Sbjct: 241 VKQRGFGE 248 >gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 30/223 (13%) Query: 78 LARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNS 132 AR+D W ++P V P+ + ++ G +H+G A+ PL P+++ V R + Sbjct: 71 FARIDEQWGPDIP----VYVASPEQLKRLTGYR-LHRGALSAMRRWPL--PSVEEVCRGA 123 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + V++++ DP N+GA++RSA A D ++ T A+ + G + +P+ RI Sbjct: 124 HRVAVMENIVDPTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRI 183 Query: 193 SNLTD------ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILG 234 L+++HS GF T+ ++ D L++ + DK+ALI G Sbjct: 184 DGDDKHYWPFKGLEELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFG 243 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 EG GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 244 TEGDGLNRHTIARADLTVKIPMSHDVDSLNVAASSAVAFYATR 286 >gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] Length = 244 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 79/141 (56%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DPHN+G+I+R+A A ++ KR S + V+AK+++GA+E++P +++ Sbjct: 95 FIIILDEITDPHNLGSIIRTADAVGAHAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVT 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + G D +Q++ + L++G+EG G+ ++ + Sbjct: 155 NIVNTIKMLKEEGLWIAAADMDGGVFYKQDLTG-PLGLVVGSEGFGISRLVKQNCDFVVS 213 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LN S A + LY Sbjct: 214 MPMVGNVTSLNASVAGGILLY 234 >gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 15/245 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106 ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++I Sbjct: 1 MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + L ++LD + D N GAI R+ Sbjct: 60 KN--HQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277 + D + +I+GAE G+ + + + G I++LNVS AA + +Y + Q Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237 Query: 278 NHFAK 282 F + Sbjct: 238 RGFTE 242 >gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM 15829] Length = 367 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LDHV D N GAI+RSA +I S K+++GA+ H+P Sbjct: 213 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 272 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ NL A+ ++ GF IG S +++ + K+ LI+G+E G+ Q+ Sbjct: 273 VQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCD 332 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + L G I++LNV+ AA V Y Sbjct: 333 FICKLPQRGRIESLNVAQAATVMCY 357 >gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 229 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 4/185 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAI 150 ++ + Q ++++V K HQG E L + + L+++LDH+ DPHN GAI Sbjct: 40 IEYLSIQEMNQLV-KNGNHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAI 98 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A F II K + + + K +SGA I IR+ +L D L+++ GF Sbjct: 99 IRNANGFGIKHIIIPKNRACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIY 158 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D K + K LI+G E G+ + + ++ ++ G +++LNV++A Sbjct: 159 SSTLDDKATKLHKTKFATPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASAT 218 Query: 270 AVALY 274 AV LY Sbjct: 219 AVLLY 223 >gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925] gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum BKT015925] Length = 263 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +A+ T D ++ ++ +++LD + DPHN+G+I+R+A GII Sbjct: 85 HQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGII 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++NL ++ + G G + Q Sbjct: 145 IPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMAGESYCFQT 204 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 205 NFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMY 255 >gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix jacchus] Length = 350 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 36/256 (14%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL + + RL ++P P + Q Sbjct: 51 LLFGLSPCLLALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRR----QK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLS-PTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL P ++A S QL +VLD + DP N GA+LR Sbjct: 107 LDAMC-RYQVHQGVCMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRC 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-- 211 A D IIT+++ S + V++K+++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 212 ------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPG 258 + SK P+ ++ + L+LG EG GL + Q + T + +P Sbjct: 226 GCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALY 274 ++LNVS A + L+ Sbjct: 286 GFESLNVSVVAGILLH 301 >gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 9/175 (5%) Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + +HQG+AL+ P LL D + +++ LD++ DP N+GA++RSA AF Sbjct: 140 ENGLHQGIALQIPPYSYAHPEDLLRRAADRG-EAPMIVALDNITDPRNLGAVIRSAAAFG 198 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ R S + +AV ++++GA +P + NL L + G Q +GL + Sbjct: 199 GHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYAAAGLQIVGLDAGGDV 258 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+ + + +++G+EGKGL +E S+ + + +++LN S AA V L Sbjct: 259 TLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESLNASVAAGVVL 313 >gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] Length = 252 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + ++ V +A P + + +LL+V D V DP N+ Sbjct: 68 YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ +NL D + + G Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 218 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209 >gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 246 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ + I ++L K+ + L + A PV+ VP + I++ Sbjct: 7 MIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRFTR 65 Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG +A +A T D V + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] Length = 246 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ + I ++L K+ + L + A PV+ VP + I++ Sbjct: 7 MIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRFTR 65 Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG +A +A T D V + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 105 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 164 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ + G + + + I L++G EG+G+ +E +A Sbjct: 165 NLAKTMEELKARGLWFVCADMGGESMYRMNLTG-PIGLVIGNEGEGVSRLVKEKCDFVAS 223 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 224 IPMKGDIDSLNASVAAGVLAY 244 >gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 293 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 28/213 (13%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV T+ K+ G +H+G A+ PL S D RN+ + VL++V D N+G Sbjct: 82 IPVYIGSEATLHKLTGYR-LHRGALAAMRRWPLPS-VEDVCRNATRVAVLENVVDHTNVG 139 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----------- 197 AI+RSA A D ++ T + A+ + G + +P+ RI D Sbjct: 140 AIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKHAWPE 199 Query: 198 -ALQKMHSWGFQTIGLS----SDSKKPLEQEIKN--------DKIALILGAEGKGLRPKT 244 L+++H GF T+ ++ S S + LE+ +++ DK+ALI G EG GL T Sbjct: 200 AGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHIDKLALIFGTEGDGLSHTT 259 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M + +LNV+ ++AVA Y T+ Sbjct: 260 IAHADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct] Length = 218 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209 >gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 246 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145 + V + +D++ G HQG+ A +D + S + +LD + DPH Sbjct: 52 INYVDKERLDRLAGT-GHHQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPH 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A G+I KR + +A +AK+++GA+ + P +++N++ ++++ Sbjct: 111 NLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQ 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + +K I L++G EG G+ ++ +A + M G I +LN Sbjct: 171 GLWFVCADMGGETMYNLNLKG-PIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNA 229 Query: 266 SNAAAVALY 274 S AA V Y Sbjct: 230 SVAAGVLAY 238 >gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] Length = 252 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL+ + +LL +K+ +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALHQDGL-VVELLVSKDVSVPEEWLKGN 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + QG+ P + + +LL+V D V DP N+ Sbjct: 68 YDVFEIST----EISHFISETMTEQGV-FAVVATTEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D +I + + + + +S G+ HIP I+ +NL D + + G Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG D++ K L K D +ALI+G EGKG+ + Q + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGISEELQARLSEKVYIPIYGKSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B1 str. Okra] Length = 257 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA+E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ ++ + M G I +LN S A + +Y Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNASVAGGMLMY 247 >gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 105 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 164 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + + + I L++G EG+G+ +E +A Sbjct: 165 NLAKTMEELKERGLWFVCADMGGESMYRMNLTG-PIGLVIGNEGEGVSRLVKEKCDFVAS 223 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 224 IPMKGDIDSLNASVAAGVLAY 244 >gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 243 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 8/194 (4%) Query: 86 NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 N+P+ +PV V + + K+ ++V + P A+ + +++ +LD V DP Sbjct: 56 NIPYEQYPVYYVTREILKKLT--DSVSGSWVMAVCHF--PEQQALTSDKII-ILDGVQDP 110 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+A++FS I+ +K + + +S GAL H+ IR LT A++++ Sbjct: 111 GNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIRTELLT-AIEELKE 169 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G++ G S PL Q + ALI+G EGKG+R + ++ M ++LN Sbjct: 170 KGYKIYGTSLHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEMD-TFESLN 228 Query: 265 VSNAAAVALYITQN 278 V+ AAA+ +Y +N Sbjct: 229 VAVAAAICMYTFKN 242 >gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 271 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 8/250 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDAN 86 K+++ + K +H + + + GV V AL+ I L+ ++ A + + + Sbjct: 19 KRLKKLHDK-KHREEFKVFLVEGVKAVKEALDYAIEDINLLIFSQEASKKYEEFFSRCIS 77 Query: 87 LPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L + +K + P+ I + + QG+ E + LD ++ ++V+D V DP Sbjct: 78 LLNSGKLKRIVQVPEKIFEHISTTTTPQGVLAECS-FFDKELDVLKKHNRVVVIDSVQDP 136 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R A AF + +IT + + +SA G++ H+ +R + L+ ++ Sbjct: 137 GNLGTIIRCADAFGFECVITVNGTVDVYNPKVVRSAMGSMFHVDVVRERKKEEVLEALNK 196 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF + + + +D+ A+++G E KG+ E AT + MPG ++LN Sbjct: 197 RGFALYVTTPYGDVDISKLSVDDRFAIVIGNESKGVDVAFLENATKKVKISMPGKAESLN 256 Query: 265 VSNAAAVALY 274 + AAA+ LY Sbjct: 257 SAVAAAIVLY 266 >gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 246 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD + DPHN+GAI+R+A G+I KR + ++ +AK+++GA+ + P +++ Sbjct: 99 FLFILDGIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ ++++ G + + +K I L++G+EG G+ +E +A Sbjct: 159 NISATIEELKEKGLWFVCADMGGELMYRMNLKG-PIGLVIGSEGDGVSRLVKEKCDYIAS 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238 >gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 218 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K + ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAE G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEDSGMRQRTK 209 >gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium nodosum Rt17-B1] Length = 234 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P P + K+ G+E +QG+ ++ + + +++LD V DP N+GAI Sbjct: 44 LPYTIAPKNVLKKLCGEEK-NQGVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAI 102 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+AVA + ++ TK S + K+++G + IP + NL ++K+ G Sbjct: 103 VRTAVAAGVNMVVLTKDNSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIY 162 Query: 211 GLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + KPL E+K ++ + ++ G EG G+R +E+ + + M I +LNVS +A Sbjct: 163 G-ADMRGKPL-WEVKLERPLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSA 220 Query: 270 AVALY 274 + +Y Sbjct: 221 GILIY 225 >gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] Length = 247 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVR-----NSQLLMVLDHVNDP 144 F ++ + P+ + + +E HQG+ ++ S + + +R + +++LD + DP Sbjct: 49 FRIEEMAPEKLANLC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDP 107 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI+R++VA D I T S + + K ++G IP I+I N+ + + Sbjct: 108 HNLGAIIRTSVAVGADAIAITSSNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKE 167 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF I S P + ++K A++ G EGKG+R +E + + + M + +LN Sbjct: 168 KGFW-IYASDMEGIPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLN 226 Query: 265 VSNAAAVALYITQNHFA 281 V+ +AA+ L+ + A Sbjct: 227 VAASAAIILFDRRRQLA 243 >gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] Length = 260 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 113 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 172 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + + + + I L++G EG+G+ +E +A Sbjct: 173 NLAKTMEELKERGLWFVCADMGGESMYKMNLTG-PIGLVVGNEGEGVGRLVKEKCDFVAA 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 232 IPMKGEIDSLNASVAAGVLAY 252 >gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola DSM 14237] gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola DSM 14237] Length = 254 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ +P+ TL+ A + L ++LD ++D N GAI+R+A DGII Sbjct: 76 HQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDGII 135 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K+ + +A K+++GA +P ++ ++ DA+ + + G +TI + ++ + Sbjct: 136 IQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVYDI 195 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+I+G+E G+ P + A + + G I +LNVS A V LY Sbjct: 196 SFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLY 246 >gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum subsp. pallidum str. Chicago] Length = 292 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + DPHN+GAI+RSA FS D ++ + + + + ++GA+ +P +R+ Sbjct: 132 LVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAGAVAWVPLVRVR 191 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + GF G + + + + K AL+LG EG G+ P + ++ Sbjct: 192 NLVRTAGILKRSGFWLYG-ADVAGEAIGARTFPPKTALVLGNEGHGVSPLLRTHCDALIS 250 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G + +LNVS AA + LY Sbjct: 251 IPTQGNVDSLNVSVAAGILLY 271 >gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 73/140 (52%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + LD + DPHN+GAI RSA F GII TK S +A + +A+G +E IP+ + Sbjct: 133 IWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGGVEDIPFAVET 192 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL+ G +G S ++K + + + +++G E KGLR E + Sbjct: 193 NLNRALKLSRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGNEQKGLRRLVLEHCDQICQ 252 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + G +LNVS AA + L Sbjct: 253 VPPLGETSSLNVSVAAGILL 272 >gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] Length = 263 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 26/208 (12%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL--------- 135 +++PH F VP T+D++ + HQG+AL L + R +LL Sbjct: 66 SDIPHIF----VPRSTLDRLT--DLPHQGVAL-----LCKSYRPSRAEELLKQTWPRPPL 114 Query: 136 -MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + D V DP N+GAI+RSA AF ++ K S + ++ K+++GA+ +P + N Sbjct: 115 FIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKASAGAVGKLPIAEVGN 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALIL--GAEGKGLRPKTQETAT 249 LT + + +G +GL S+SK P+++ + K DK AL+L G+EG G+ ++ Sbjct: 175 LTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCD 234 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + +LNVS A ++ALY Q Sbjct: 235 ELLTIPTDASVDSLNVSVAVSIALYELQ 262 >gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 244 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 3/167 (1%) Query: 111 HQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ L P+ N + ++VLDH+ DPHN+GAI+R+A +I +K Sbjct: 73 HQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKER 132 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKND 227 S + ++ + K +SG ++ I++++++ L K+ W + + ++ + + Q N Sbjct: 133 SANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNK 192 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 193 PSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLY 239 >gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 231 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 3/167 (1%) Query: 111 HQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ L P+ N + ++VLDH+ DPHN+GAI+R+A +I +K Sbjct: 60 HQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKER 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKND 227 S + ++ + K +SG ++ I++++++ L K+ W + + ++ + + Q N Sbjct: 120 SANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNK 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 180 PSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLY 226 >gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] Length = 342 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 12/261 (4%) Query: 25 RNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARL 81 R+H Y + Q+ R E ++ G AL P ++ +N A Sbjct: 68 RSHAAYARDAQASASPRRDVHAAEGNYIEGRRAAFEALRTGFPIKRALIAQGVENDPAVR 127 Query: 82 DWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQ 133 D A L VK+V +D I HQG+ LE + Sbjct: 128 DLLAGLGEAGVSVKSVARAQLDAIS-SHGAHQGIVLEVGKFPYADLADIIAAAGPADRPA 186 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLDHV D N GAI+RSA G++ + S + K+++GA+ H+P ++ Sbjct: 187 LVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQVP 246 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ AL+ + S GF G + ++ ++AL++G+EG G+ +T Sbjct: 247 NIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFTTK 306 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L G ++LNV+ AA + Sbjct: 307 LPQRGATESLNVAQAATALCF 327 >gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 252 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + ++ V +A P + + +LL+V D V DP N+ Sbjct: 68 YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ ++L D + + G Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYITIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 244 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG + +P+ +D + + L ++LD ++D N GAI+R+A +GII Sbjct: 67 HQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVNGII 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K+ + K+++GA+ IP ++ ++ DA+ M S G + I + + + Sbjct: 127 IQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFVYDV 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+I+G+EG+G+ P + + A L + G I++LNVS A LY Sbjct: 187 SFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLY 237 >gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] Length = 257 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHNFGSILRTAEVCGVHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA+E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ + + M G I +LN S A + +Y Sbjct: 197 SLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVAGGMLMY 247 >gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] Length = 332 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 7/192 (3%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 H PV P + +I G E VH+G ++ PLL+P ++ +R ++ ++V + + N Sbjct: 138 HEAPVYVAGPAVLAQITGFE-VHRGALASMCRRPLLNP-VELLRVARRVLVCEDLVSHTN 195 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA D ++ + R + + + G + +PY R+ AL + G Sbjct: 196 LGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALSLLGEAG 255 Query: 207 FQTIGLS--SDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ + L+ SD+ + + D++AL+LG EG+GL + TAT + M + +L Sbjct: 256 FEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSL 315 Query: 264 NVSNAAAVALYI 275 NV+ AA+A Y+ Sbjct: 316 NVAATAAIACYV 327 >gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 3502] gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 19397] gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. Hall] gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A3 str. Loch Maree] gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] Length = 257 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA+E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ + + M G I +LN S A + +Y Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247 >gi|77407564|ref|ZP_00784377.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] gi|77173827|gb|EAO76883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] Length = 169 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 122 LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 LS + N + L+++LD + DPHN+G+ILR+A A + GII K S + V++K+ Sbjct: 48 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 107 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++GA+EH+P R++NL+ L + F G + P + K+AL++G EGKG Sbjct: 108 STGAVEHVPIARVTNLSQTLDTLKDKEFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKG 166 Query: 240 L 240 + Sbjct: 167 I 167 >gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] Length = 235 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 79/143 (55%), Gaps = 2/143 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + DP N+G I+R+A +F + + ++ + + +++ GA+ IP R + Sbjct: 95 VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGAIFSIPVFR-ED 153 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + + G + +G S PL++ K D IA++LG EG+G++ E + + Sbjct: 154 LKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAILLGNEGQGVKGNLLELCDEITRI 213 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 M G ++LNV+ A A+ +Y+ Q Sbjct: 214 EMSG-FESLNVAVAGAILMYMFQ 235 >gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] Length = 247 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E +P+ L+ LD V + +++LD V D N GAI+RSA D +I Sbjct: 69 HQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAECAGVDVVI 128 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQ 222 + S S+ K+++GAL H+P R+ NL ++++ G + + ++K Sbjct: 129 IPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATEKAEKFYTG 188 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G+E KG+ + AT + G I++LNVS AAAV L+ Sbjct: 189 ADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLF 240 >gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 230 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 4/172 (2%) Query: 111 HQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG A + L ++ S +++LDH+ DP N GAI+RSA F II K Sbjct: 57 HQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKDR 116 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKND 227 + + + K++SG +++ I++++L DA++++ + GF + + + K L N+ Sbjct: 117 ACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFNE 176 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278 KIA+I+G EG G+ + + + ++ +++LNVS A + LY N Sbjct: 177 KIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVFN 228 >gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] Length = 246 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 6 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINRITR 64 Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + L P L + ++LD V D N GAI R+ + Sbjct: 65 KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 123 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 183 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVY 237 >gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. Langeland] gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. 230613] Length = 257 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA+E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ + + M G I +LN S A + +Y Sbjct: 197 NLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVAGGMLMY 247 >gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162] Length = 247 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 21/203 (10%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV--RNSQ--- 133 PV+T+ + TI V KE + HQG+ + A T+D + R + Sbjct: 34 PVRTIAREARKTDTIINYVSKERLDQLSETRAHQGVIAQAAAYEYSTVDEILARAEEKGE 93 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++LD+V DPHN+GAI+R+A G+I KR + ++ +AK+++GA+ + P + Sbjct: 94 PPFLILLDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAK 153 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++N+ ++++ G + + + ++ + L++G EG+G+ +E Sbjct: 154 VTNIVRMIEELKEKGIWFVCADMGGEIMYDLDLTG-PMGLVIGNEGEGVSRLVREACDFT 212 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M G I +LN S AA V Y Sbjct: 213 ASIPMKGDIDSLNASVAAGVLAY 235 >gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P +++ Sbjct: 99 FIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL ++++ G F + ++ L I L++G EG G+ +E + Sbjct: 159 NLVKTMEELKEKGLWFVCADMGGETMYRLNL---TGPIGLVIGNEGTGVGRLVKEECDFV 215 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M G I +LN S AA V Y Sbjct: 216 ASIPMKGDIDSLNASVAAGVLAY 238 >gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] Length = 246 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + L ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A] gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] Length = 247 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVY 238 >gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] Length = 248 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 21/240 (8%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQTIDK 103 L +YG + V A+ + R + ++L ++ L +L + N+ ++ VP + I++ Sbjct: 4 LIIYGRNPVLEAIRS-GRSVEKVLVAHDSHPPHQLVKLCKEKNIK----LQKVPRKKIEE 58 Query: 104 IVGKEAVHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + LA+ + L TL+ L+VLDH+ DP N+G +LR+ Sbjct: 59 LAGTKKTQGVLAILSPVHYVKEEELFRKTLE---RGSFLLVLDHLTDPQNVGNLLRTCEV 115 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G + K S + + K++SGA+ H+ R+S+L +L+ G + + Sbjct: 116 LGGVGALLPKDRSCPINQTVIKASSGAVFHLLLSRVSSLRRSLENFKRVGGWIVVVERGG 175 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +I AL+LG+EG+G+ E A + + M G I +LNVS+A A+A++ T Sbjct: 176 KDIRQVDIPLP-CALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWET 234 >gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05] Length = 240 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 2/146 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R++ +V+D+V DP N+GA +RSA A + G+I K + + ++ + ++G E + Sbjct: 89 RDNPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKHHCSPITPLVRQVSAGGTEAMKI 148 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248 ++NL +A++ G+ +G +S+ K + E+ N I I+G+E +G+R KT E Sbjct: 149 FIVTNLINAIKHFEKLGYLILG-TSEHAKSMHTELDLNKPILTIIGSEEEGMREKTLEKC 207 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +++ L + +LNVS AA V L+ Sbjct: 208 STVCTLSKNETLNSLNVSVAAGVILF 233 >gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] Length = 269 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 9/234 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVH 111 G T+SA L++ LL N L+ L P P+ VP + +D I G VH Sbjct: 38 GKVTLSALLHSKDFSAISLLIVANRLSGLLPLLEKTQPLCPIYCVPQKVMDNITGFH-VH 96 Query: 112 QGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +G+ +T P L L + L++VL +++ N+G+I R+A AF+ +GII K Sbjct: 97 RGVLGIGKRKTLPSLQSFLQHLPEKALILVLCGISNHDNMGSIFRNAAAFASNGIIVDKT 156 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++GA +PY + +++ D + + F LS + L+Q K Sbjct: 157 SCDPLYRKSIRVSAGAALKVPYTQNADINDIIAALKDKNFHLYALSPSASHTLKQANKTK 216 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 ++ALI G EG GL + + ++ + M +LNV+ A+ +AL +I +H Sbjct: 217 RMALIFGTEGDGLPTHILQQSKTL-RIPMTNGFDSLNVATASGIALAHFINFDH 269 >gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 267 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 7/188 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGA 149 P Q + +VG LA+ + AP PT D V N+++L VL+ VND N+GA Sbjct: 78 PAYVTSAQIMSDVVGFHLNRGVLAVADRAP--KPTFDEVVANARVLAVLEGVNDHENLGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+A AF DG++ + + + G + +P+ AL ++ +GF Sbjct: 136 MFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGFHL 195 Query: 210 IGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ S+ + E ++IAL+ G+EG GL + A S + M + +LNV+ Sbjct: 196 AALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLNVA 255 Query: 267 NAAAVALY 274 AAAVA Y Sbjct: 256 TAAAVAFY 263 >gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] Length = 288 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 24/210 (11%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147 PV P+ + ++ G +H+G A++ PL P+++ V R ++ + V++++ D N+ Sbjct: 82 IPVYVASPEQLKQLTGYR-LHRGALAAMKRWPL--PSVEEVCRGARRIAVMENIVDHTNV 138 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GA++RSA A D ++ T A+ + G + IP+ RI +Q+ Sbjct: 139 GALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTGMQE 198 Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETAT 249 +H GF T+ ++ D LE+ ++ DK+ALI G EG GL T A Sbjct: 199 LHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHIDKLALIFGTEGDGLSHHTISRAD 258 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M + +LNV+ ++AVA Y T H Sbjct: 259 LTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288 >gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e] gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes Finland 1988] gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes FSL R2-561] gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459] gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161] gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064] gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175] gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e] gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype 4b str. F2365] gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99] gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208] gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816] gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A] Length = 252 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + ++ V +A P + + +LL+V D V DP N+ Sbjct: 68 YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ ++L D + + G Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] Length = 247 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella byssophila DSM 17132] gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella byssophila DSM 17132] Length = 263 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 24/249 (9%) Query: 41 RHTSQP-ENLFLYGVHTVSAALNNPSR--KIFQLLATKNA-----LARLDWDANLPHPFP 92 +H ++P + F++GV++V L + KI L K+ LAR P Sbjct: 14 KHINRPNKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLAR-------NRGIP 66 Query: 93 VKTVPPQTIDKIVGKEAVHQG-LALETA---PLLSPTLDAVRNSQ---LLMVLDHVNDPH 145 V+ VP + ++++ K HQG +A +A +LS + ++ S L+++LD + D Sbjct: 67 VQKVPMEKLNRVTMKN--HQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDRITDVR 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI RSA ++ R S + K++SGAL IP R ++L + ++ + + Sbjct: 125 NFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVKYLKNS 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GFQ I + + + A+I+G+E G+ + + A + + G +++LNV Sbjct: 185 GFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVESLNV 244 Query: 266 SNAAAVALY 274 S AA V L+ Sbjct: 245 SVAAGVILF 253 >gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays] gi|238908839|gb|ACF86752.2| unknown [Zea mays] Length = 549 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 39/201 (19%) Query: 111 HQGLALETAPLLS---PTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L+ +PL LD VR + + + LD + DP N+GAI+RSA F G++ Sbjct: 332 HQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVV 391 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 + S S V++K+++G+LE I + N+ L G++ +G + +K PL Q Sbjct: 392 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSQ 451 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------------------------ 258 L++G+EG GLRP + + T + + +PG Sbjct: 452 VELGVPTILVMGSEGTGLRPLVERSCTHL--VRIPGNVDVSVEGADADAGEEGDSSSNRD 509 Query: 259 -----IIKALNVSNAAAVALY 274 +++LNVS AA V LY Sbjct: 510 LRSFLAVESLNVSVAAGVLLY 530 >gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] Length = 292 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 32/221 (14%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140 W A++P V P+ + ++ G +H+G A+ PL S + R+++ + V+++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCRSARRVAVMEN 131 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197 + D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191 Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236 + ++ S GF T+ ++ + + P E DK+ALI G E Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680] gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680] Length = 272 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL PT D + ++ +++++ VND N Sbjct: 76 PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPL--PTADELLATARRVVIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAG 192 Query: 207 FQTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + L+ D K K L++ K D++AL+LGAEG GL + A + M + +L Sbjct: 193 FNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] Length = 260 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 17/195 (8%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 VK VP + K+ G HQG+A A + +L+ A + L++ D V DPH Sbjct: 61 VKRVPGNKLQKLCGTPD-HQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPH 119 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203 N+GAI+RSA G++ KR + + K+++GA +P R++NL A++ K H Sbjct: 120 NLGAIIRSAYLCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEH 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PG---I 259 + L PL + + +AL+LG+EG G T++ + L M PG Sbjct: 180 NVFVYCADLGG---APLSRTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATG 236 Query: 260 IKALNVSNAAAVALY 274 + + NVS AA + Y Sbjct: 237 VDSYNVSVAAGILCY 251 >gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor] gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor] Length = 552 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 13/171 (7%) Query: 111 HQGLALETAPLLS---PTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ L+ +PL LD VR + + + LD + DP N+GAI+RSA F G+I Sbjct: 332 HQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVI 391 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL-E 221 + S S V++K+++G+LE I + N+ L G++ +G + +K PL E Sbjct: 392 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSE 451 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 EI I L++G+EG GLRP + + T + + +PG + V A A A Sbjct: 452 VEIGVPTI-LVMGSEGTGLRPLVERSCTHL--VRIPGNVDVF-VEGAGADA 498 >gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 15/262 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89 MQ+F + R+ + N ++G+ V A+++ ++I L + L + H Sbjct: 1 MQNFQRHDRNEKRESNQMVFGIRAVIEAIDS-GKEIESLFVQRGLGGSLFLELKALIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142 + VP + +++I K HQG+ +P+ L P + + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRITRKN--HQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALY--ITQNHFAK 282 LNVS +A V LY I Q K Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259 >gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio] Length = 387 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 40/267 (14%) Query: 41 RHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90 R SQP E ++GV AL R L ++A+ R+ +A + Sbjct: 118 RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 176 Query: 91 FPVKTVPPQTIDKIV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDH 140 +K V QT++K+ GK VHQGL L E P+ S L+ L +VLD Sbjct: 177 VQIKRVNKQTLEKMCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDG 232 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAILRSA D I+++ S + ++K+++G +E + SNL ++ Sbjct: 233 VQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIK 292 Query: 201 KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMA- 252 G+Q T+GL S + + K++ L++G EG GL + ++ + Sbjct: 293 VKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLIT 352 Query: 253 -----HLHMPGIIKALNVSNAAAVALY 274 H+H PG +++LNVS A + L+ Sbjct: 353 IPPRRHMH-PG-VESLNVSVATGILLH 377 >gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp. Re1] Length = 250 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 12/190 (6%) Query: 96 VPPQTIDKI----VGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDP 144 VP ID+ + K A HQG+ + A + L R+ +++L+ + DP Sbjct: 48 VPISEIDEAAFLSMAKTAGHQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDP 107 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G+I+R+A GII K + + +AK +SGA+E++ R++N+ + ++ Sbjct: 108 QNLGSIIRTADGMGAHGIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKK 167 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G IG ++ K E ++ IAL++G E KGL ++ + + + G I +LN Sbjct: 168 EGLWIIGADAEGKNYFEVDLTG-SIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLN 226 Query: 265 VSNAAAVALY 274 + AA++ Y Sbjct: 227 AAVAASILGY 236 >gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] Length = 246 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + L ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] Length = 271 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 10/195 (5%) Query: 94 KTVPPQTIDKIVGKEAVH----QGLA----LETAPLLSPTLDAVRNSQLLMV-LDHVNDP 144 K P Q +D+ V + QG+A + P+ ++A +LMV LD + DP Sbjct: 74 KGCPVQPVDRRVLERVCEVITPQGIAAVVRIPERPMPGFAVEAPEEDPVLMVALDGIQDP 133 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA+LR A A G++ + + S +S+ GA +P IR L + + + H+ Sbjct: 134 GNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSMGAAFTVP-IRQGRLVNMIGEWHA 192 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + ++ N + ++LG EG+G+ P+ + H+ MPG ++LN Sbjct: 193 KGVEPVETAVGEGVRYDRWNWNIPVMIVLGNEGRGISPEVRHLCRGKVHIPMPGGGESLN 252 Query: 265 VSNAAAVALYITQNH 279 V+ AAA+ LY + H Sbjct: 253 VAVAAALLLYEARRH 267 >gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] Length = 249 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A L PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ T+ + L P L + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S S +A K+++GAL +P R +L LQ + GF + + Sbjct: 124 DAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHV 141 W A++P V P+ + ++ G +H+G L P++ + R+++ + V++++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWLLPSVAEVCRSARRVAVMENI 132 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD---- 197 D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 133 VDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTE 192 Query: 198 --------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEG 237 + ++ S GF T+ ++ + + P E DK+ALI G EG Sbjct: 193 NKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEG 252 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 253 DGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Ba4 str. 657] Length = 257 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ + + M G I +LN S A + +Y Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247 >gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum H04402 065] Length = 257 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ T P D +R ++ +++LD + DPHN G+ILR+A G+I Sbjct: 77 HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + + K+++GA E++ +++N+ + + K+ G G Sbjct: 137 IPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IAL++G+EG+G+ T+ + + M G I +LN S A + +Y Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247 >gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHV 141 W A++P V P+ + ++ G +H+G L P++ + R+++ + V++++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWLLPSVAEVCRSARRVAVMENI 132 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD---- 197 D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 133 VDHTNVGALMRSAAALDVDAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTE 192 Query: 198 --------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEG 237 + ++ S GF T+ ++ + + P E DK+A+I G EG Sbjct: 193 NKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLAMIFGTEG 252 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 253 DGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179] gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179] Length = 227 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG + P S L +++ L+VL ++D N+GA+ RS DG+I K P Sbjct: 65 HQGWLAKVLPPKSSALGVLKSLDKLLVLCGLSDVGNVGALFRSVACLGFDGVIMDKAL-P 123 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSSDSKKPLEQEIK 225 E LA+++ GAL +P+ N D LQ ++H +G G + + Q + Sbjct: 124 FEG--LARASMGALYDVPFCVCPNPLDILQGLKDVRVHCYGAHIEG------QNVRQVVF 175 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +A+ LG+EG GL PK ++ ++ M G I +LNVS A A+ + Sbjct: 176 KPPLAIFLGSEGAGLAPKLVRRMDTLVNIGMEGKIDSLNVSVAGAILM 223 >gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 272 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL PT D + + + +++++ VND N Sbjct: 76 PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPL--PTADQLLGAARRVVIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLDAVRDAG 192 Query: 207 FQTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + L+ D K K L++ + D++AL+LGAEG GL K +A + M + +L Sbjct: 193 FTLLALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] Length = 278 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 75/142 (52%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S LL+V DH+ D N+GA++R+A F G+I K S + + K +SGA +P R Sbjct: 121 SALLLVADHITDSGNLGALMRTAAFFGAHGLIIPKDRSAGITPTVLKRSSGAHTKLPVAR 180 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ AL ++ +G + ++++ + + L+LG E KGL P ++ + Sbjct: 181 VTNLSRALNELSRNELWIMGAAGEAEESIYDFDWRRPLVLVLGNERKGLSPSARKQCHGL 240 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + PG +LN+S A V L Sbjct: 241 VSIPSPGNTDSLNISVAGGVIL 262 >gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] Length = 248 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPLLSPTLDAV----RNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + +L+ V RN+ LL+VL ++DPHNIGAI+R+A A + D ++ Sbjct: 72 HQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLV 131 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +AV+ K+++GAL H+ ++ +L AL+ +H Q + +++ Sbjct: 132 EGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAELNYTDADM 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG EG G+ P+ + + + M G +++LNVS A V LY Sbjct: 192 KKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLY 240 >gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 288 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 30/225 (13%) Query: 78 LARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNS 132 AR+D W ++P V P+ + ++ G +H+G A++ PL P+++ V R + Sbjct: 71 FARIDQRWGTDIP----VYVASPEQLKQLTGYR-LHRGALAAMKRWPL--PSVEEVCRGA 123 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + V++++ D N+GA++RSA A + D ++ T A+ + G + IP+ RI Sbjct: 124 RRIAVMENIVDHTNVGALMRSAAALNVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRI 183 Query: 193 SNLTD------ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILG 234 +Q++ GF T+ ++ D LE+ ++ DK+ALI G Sbjct: 184 GGDDKHYWPFTGMQELRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHIDKLALIFG 243 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EG GL T A + M + +LNV+ ++AVA Y T H Sbjct: 244 TEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288 >gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N LA L LP PV +VP +D + G VH+G LA+ + P L Sbjct: 67 LLVLENRLAGLGEQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPGLEAM 125 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 126 LGALPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGATL 185 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY N+ + + + F + LS S + K D+ AL+LG EG+GL P+ Sbjct: 186 KVPYFHGGNIDEIIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLPPRLL 245 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A + M +LNV+ A+ +AL Sbjct: 246 GKLQT-ARIPMSTAFDSLNVATASGIAL 272 >gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 253 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 73/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DPHN G+I+RSA GIIT R S + + K+++GA+EHI R+ Sbjct: 95 FLVLLDEITDPHNFGSIIRSAHLCGAHGIITEARNSCPITPTVEKASAGAIEHIKVARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + + G ++++K + I +I+G+EGKG+ +E A + Sbjct: 155 NLRRTIDSLKEKGVWVYAADNNAEKFVYDCDFKIPICIIIGSEGKGISRLVKEGADFLVK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I + N S AA + + Sbjct: 215 IPQKGKINSYNASVAAGIIFF 235 >gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 246 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A L PV+ VP + I+++ Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRVTR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + L ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R +L + LQ + + GF + + Sbjct: 124 DAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] Length = 288 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 46/294 (15%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 +K S F +DS + HR+Y+ L+GV AL Sbjct: 6 RKLSLDDFPEEDSRERLSKEEHRNYET------------------LFGVSPCLLALTQGR 47 Query: 66 RKIFQLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 R +L A++ A R + P++ V ++K+ VHQGL L+ + Sbjct: 48 RNAHRLFVKEGEASRRASVRQVCEEAHRQGVPIQRVSKNDLNKMCSG-GVHQGLCLQASC 106 Query: 121 LLSPTLDAV----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 L T D R+S L +VLD V DP N+GAILRSA D + ++ R S + Sbjct: 107 LGFLTDDKTSKPPRDSSHIPLWLVLDGVQDPMNLGAILRSAYFLGVDRVASSLRNSCPLT 166 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIA-- 230 V++K++SG +E + +LTD L+ + G+Q IG + ++++ +K K Sbjct: 167 PVVSKASSGVMEVMRVYGYDSLTDMLKVKLAQGWQVIGTVGAEAENAHVPVMKCSKFQMT 226 Query: 231 ----LILGAEGKGLRPKTQETATSM------AHLHMPGIIKALNVSNAAAVALY 274 L++G EG+GL + + M LH PG +++LNVS A + L+ Sbjct: 227 KPTLLLMGGEGEGLSRELRLQCEVMLTIIPRRDLH-PG-VESLNVSVATGILLH 278 >gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 237 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 23/178 (12%) Query: 111 HQGLA--LETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L PL L+ LDA Q+++VLD V DP N+GA++R+ A GI Sbjct: 56 HQGVMARLAAGPLVSLEDVLAAGLDA--PLQVILVLDRVQDPGNVGALVRTLYALGGGGI 113 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K AK+++G L +P +++NL+ AL G+ IG + E+ Sbjct: 114 LVPKHEGARLGPGAAKASAGTLARLPLAKVTNLSQALDAAKEAGYTVIGAAG------EE 167 Query: 223 EIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E +N +AL+LG+E +G+RP ++ ++ + I +LNV+ A A+ + Sbjct: 168 EAQNVHLAKPPFPLALVLGSEEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIMM 225 >gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC20E09] Length = 238 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 52 YGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 YG H++ + +NN I +L + + R+ +L F +K + K EA+ Sbjct: 9 YGFHSIESIINNNPHTIKKLFIPSSRDDKRIHQLISLAEKFEIKYEISNKLKK--DPEAI 66 Query: 111 HQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L ++ N L +++LD++ DP N+G+ +RSA + D +I K + Sbjct: 67 VANSETGSLKDLKVFIEDSSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIINKHHC 126 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + V ++G E I +SNL + L+ + GLS ++K + Sbjct: 127 APLNEVAHNVSAGGAELINIFYVSNLINCLKYLRKSNIDIYGLSEHAQKIYTSCDFTNSS 186 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 A+ILG+E G+R KT E+ + L++ K+ NVS A + L Sbjct: 187 AIILGSEESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIIL 230 >gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 254 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 10/189 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 VP + ++++ K HQG + +P L+ TL++ L ++LD ++D N Sbjct: 58 VPIEKLNRL-SKNGNHQGAVAQISPVEFYDLEELIEKTLES-NKVPLFLLLDQLSDVRNF 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A +GII K S +A K+++GA IP ++ ++ DAL + + Sbjct: 116 GAIIRTAECTGVNGIIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEI 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +T+ + ++ L N IA+++G+E +G+ P + A L + G I +LNVS Sbjct: 176 KTVAATEKTEDVLYDINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSV 235 Query: 268 AAAVALYIT 276 A LY T Sbjct: 236 ACGAFLYET 244 >gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] Length = 238 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 3/166 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ ++ + + + L++LD + DPHN GAI+R+AVA D II K Sbjct: 63 HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPKNN 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + + K + G + I I+ N+ ++ + G G ++ K + +++ Sbjct: 123 SVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKVYYKTDLRK-P 181 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 IA++LG EG G+RP +E ++ + M +++LNVS +A + LY Sbjct: 182 IAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLY 227 >gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-] gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe] Length = 301 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 50/289 (17%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NL 87 KK ++ K R + ++ F++G H+V AL R+ + L +NA +++ L Sbjct: 14 KKAKAHLSKERRLIKEDSEFVFGTHSVKNALATRKREC-RALYVQNADIHSEFEEFLNKL 72 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------RNSQ---- 133 + P+K+V + +++I H G+ LE + L PT+ + +N Q Sbjct: 73 QYKIPIKSVNKEHLNQITACRP-HNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPH 131 Query: 134 ----------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L + +D + DP N+GA++RSA GI+ +K+++ S V++ Sbjct: 132 NDLNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVS 191 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKK------PLEQEIKNDK 228 K+++GALE + N L+ G++ IG D+K ++ E+ N+ Sbjct: 192 KASAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEP 251 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVALY 274 L+LG+E KGLR T ++ +PG + +LNVS AA + LY Sbjct: 252 KILVLGSE-KGLR--TNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLY 297 >gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SS3/4] Length = 248 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD + DPHN+GAI+R+A G+I KR + +A +A++++GAL + P +++ Sbjct: 99 FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVT 158 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ ++ + G F + +S L I L++G EG+G+ +E + Sbjct: 159 NMAATIEDLKKRGIWFVCADMGGESMYRLNL---TGPIGLVIGNEGEGVSRLVKEKCDMI 215 Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 A + M G I +LN S A V Y I + AK Sbjct: 216 ASIPMKGDIDSLNASVATGVLAYEIVRQRLAK 247 >gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) (MRM1) [Danio rerio] Length = 321 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 40/267 (14%) Query: 41 RHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90 R SQP E ++GV AL R L ++A+ R+ +A + Sbjct: 52 RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 110 Query: 91 FPVKTVPPQTIDKIV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDH 140 +K V QT++K+ GK VHQGL L E P+ S L+ L +VLD Sbjct: 111 VQIKRVNKQTLEKMCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDG 166 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAILRSA D I+++ S + ++K+++G +E + SNL ++ Sbjct: 167 VQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIK 226 Query: 201 KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMA- 252 G+Q T+GL S + + K++ L++G EG GL + ++ + Sbjct: 227 VKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLIT 286 Query: 253 -----HLHMPGIIKALNVSNAAAVALY 274 H+H PG +++LNVS A + L+ Sbjct: 287 IPPRRHMH-PG-VESLNVSVATGILLH 311 >gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740] gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes] Length = 257 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 14/169 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG +E + +L ++ L+VL V+D NIG I RSA +G+I T S Sbjct: 88 HQGFLMEIEAISPLSLGEIKRVDRLLVLHGVSDSGNIGGIFRSAYCLGMEGVILTNLSSF 147 Query: 171 S-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S ESA+ +++SGAL +P+ + N D + ++ GF G + LE EI N K Sbjct: 148 SIESAI--RTSSGALLELPFGIVKNPWDLINELRGAGFTLYGAA------LEGEIPNGKS 199 Query: 230 -----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL +G+EG+GL K + + M +LNV AAA+ + Sbjct: 200 FASKRALFMGSEGEGLPKKLLSKLDQLLKIEMERDFDSLNVGVAAAILM 248 >gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] Length = 243 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 N +YG ++V LN +I FQ + N L + A H V + + + Sbjct: 2 NNVVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITAR-RHRIAVGKARLEKLSE 60 Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFS 158 I G HQG+ + + + L+ RNS L+++L + DP+NIGAI+RSA A + Sbjct: 61 IAGTTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVA 119 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + +A + K+++GAL H+ ++ +L L+ + S FQ + +++ Sbjct: 120 ADAVVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAER 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALI+G EG+GL E ++ L M G I++LNVS A V LY Sbjct: 180 NYTDIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLY 235 >gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] Length = 301 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 9/190 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV T + + K+ G A+ +GL + P+ + V ++ + VL++V +P N+GA Sbjct: 110 IPVYTAEYEVLKKLTGF-ALIRGLLCAMRRKVLPSPEGVCSDAHRIAVLENVMNPINVGA 168 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T S A+ + G + IP+ I ++T + +H+ GF+T Sbjct: 169 IFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMTAGMDILHAMGFKT 228 Query: 210 IGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + D P +E+ +K+A+ILG EG+GL+ T + + M + +LN Sbjct: 229 ASMALRNDTIDINDPRLKEV--EKLAVILGTEGEGLKTSTIYASDFTIKIPMFHGVDSLN 286 Query: 265 VSNAAAVALY 274 V+ A+AVA + Sbjct: 287 VATASAVAFW 296 >gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629] Length = 255 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +A+ A + D + N++ +++LD + DPHN+GAI+R+A GII Sbjct: 75 HQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGII 134 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 135 IPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADMGGTTMYDLN 194 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 195 LTG-PIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAY 244 >gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 15/262 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89 MQ+F + R + N ++G+ V A+++ ++I L + L + H Sbjct: 1 MQNFQRHDRSEKRESNQMVFGIRAVIEAIDS-GKEIESLFVQRGLGGSLFLELKSLIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142 + VP + +++I K HQG+ +P+ L P + + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRITRKN--HQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALY--ITQNHFAK 282 LNVS +A V LY I Q K Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259 >gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1] Length = 255 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG +A+ A + D + N++ +++LD + DPHN+GAI+R+A GII Sbjct: 75 HQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGII 134 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 135 IPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADMGGTTMYDLN 194 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 195 LTG-PIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAY 244 >gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 251 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 3/185 (1%) Query: 93 VKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGA 149 V++ P + + K+ G QG+ A AP + P A+ ++ L ++VLD + P N+G Sbjct: 59 VQSAPAERVKKLAGNGRQDQGVFADVVAPRMLPLEVAIDHADLRTVLVLDGITTPANVGM 118 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILRSA A DGI+ +R S ++ K+++G P ++ +A+ + GF Sbjct: 119 ILRSATAAGIDGIVVPRRGVASIDPLVVKASAGIAFRAPILKTFTAVEAVTALKEAGFHI 178 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +GL +D L +++A++LG+E G P+ + + M G +++LNVS AA Sbjct: 179 VGLDADGDDDLFTAHLRERVAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAA 238 Query: 270 AVALY 274 AV + Sbjct: 239 AVVCF 243 >gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 292 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140 W A++P V P+ + ++ G +H+G A+ PL S + ++++ + V+++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197 + D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191 Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236 + ++ S GF T+ ++ + + P E DK+ALI G E Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 252 GDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS] Length = 495 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 121/305 (39%), Gaps = 89/305 (29%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98 F+YG H V +A+ RKI+ L + N+L +L A VK V Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAK----VKIVSS 195 Query: 99 QTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------------- 134 + + V KE HQG+ E +PL P L A+ Q+ Sbjct: 196 EWSQALSRVCKEVNHQGIVAEVSPL--PKLPALSYEQVASLPVTNFNVKVAPQSKEEAAV 253 Query: 135 ------------------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 ++LD + DPHN+GAILRSA F D + Sbjct: 254 NGTSGLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAF 313 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGF----QTIGLSSDSK- 217 + R S S V+ KS+SGA EHIP I I + + + + W F ++ DSK Sbjct: 314 SSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKN 373 Query: 218 ------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIKALNVS 266 K L E++N L+LG EG GL + + A + + P + +LNV+ Sbjct: 374 KNIVSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVA 433 Query: 267 NAAAV 271 A+ + Sbjct: 434 VASGI 438 >gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] Length = 247 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + L P L + ++LD V D N GAI R+ + Sbjct: 66 KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R +L LQ + GF+ + + Sbjct: 124 DAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 268 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 5/188 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV I+ + G +H+G LA P L+ + +R+++ ++VL+ + D N+GA Sbjct: 78 VPVYVGEADVIESMTGFH-LHRGALASMNRPALALPEELLRDARRVVVLEDIVDHTNVGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH--SWGF 207 I RSA A D ++ T R + + + G + +P+ RI ++ ++ W Sbjct: 137 IFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPGSVTRLQEAGWTV 196 Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L+ DS E + +++AL++G EG GL +T + M G + +LNV+ Sbjct: 197 AAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTVAACDVTVRIPMAGGVDSLNVA 256 Query: 267 NAAAVALY 274 A+AVA+Y Sbjct: 257 AASAVAMY 264 >gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 245 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 27/206 (13%) Query: 92 PVKTVPPQ-----TIDKIVGKE--------AVHQGLALETAPLLSPTLDAV-------RN 131 PV+T+ + TI V KE HQG+ + A +++ + Sbjct: 34 PVRTIAREARKKDTIINYVAKERLDQLSETGAHQGVIAQVAAYEYASVEDILAKAREKGE 93 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +LD++ DPHN+GAI+R+A G+I KR + ++ +AK+++GAL + P + Sbjct: 94 DPFIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGALNYTPVAK 153 Query: 192 ISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++NL D L++ W F + ++ L I +++G EG+G+ +E Sbjct: 154 VTNLGHTIDELKEQGMW-FVCADMGGETMYNLNL---TGPIGVVIGNEGEGVSRLIREKC 209 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +A + M G I +LN S AA V Y Sbjct: 210 DFVASIPMKGDIDSLNASVAAGVLGY 235 >gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 495 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 121/305 (39%), Gaps = 89/305 (29%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98 F+YG H V +A+ RKI+ L + N+L +L A VK V Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAK----VKIVSS 195 Query: 99 QTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------------- 134 + + V KE HQG+ E +PL P L A+ Q+ Sbjct: 196 EWSQALSRVCKEVNHQGIVAEVSPL--PKLPALSYEQVASLPVTNFNVKVAPQSKEEAAV 253 Query: 135 ------------------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 ++LD + DPHN+GAILRSA F D + Sbjct: 254 NGTSGLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAF 313 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGF----QTIGLSSDSK- 217 + R S S V+ KS+SGA EHIP I I + + + + W F ++ DSK Sbjct: 314 SSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKN 373 Query: 218 ------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIKALNVS 266 K L E++N L+LG EG GL + + A + + P + +LNV+ Sbjct: 374 KNIVSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVA 433 Query: 267 NAAAV 271 A+ + Sbjct: 434 VASGI 438 >gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 8/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T +++I G + L P + +N++ + VL++V +P N+GAI Sbjct: 91 IPVYTAKLGVLEQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAI 150 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-----DALQKMHSW 205 RSA A + D ++ T S + + G + +P+ I N + +H + Sbjct: 151 FRSAAALNMDAVLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEY 210 Query: 206 GFQTI--GLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T+ L +DS + ++++ +K+A+ILG EG GL +T + M + + Sbjct: 211 GFKTVAMALRNDSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDS 270 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA + Sbjct: 271 LNVAAASAVAFW 282 >gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 233 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 5/193 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 VK V +DK+V HQG LE +++++LDH+ D +N+G I Sbjct: 40 VKIVSRDFLDKLV--RLNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A F II KR + + K +SG + +I ++++ A+ K+ F Sbjct: 98 IRTANCFGIKHIILPKRRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K QEI+ N A+ILG EG G++ + + + + G + +LNV+ A Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217 Query: 270 AVALYITQNHFAK 282 + L+ + + K Sbjct: 218 GIILFFLKQNIKK 230 >gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] Length = 250 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 76/141 (53%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD V DP N+GAI+R+A GI+ +S + + ++++GA+EH+ ++ Sbjct: 96 FLILLDGVEDPQNLGAIIRTAECAGVHGIVLPLHHSVKVTPAVGRASAGAVEHMKIALVT 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A++++ G +G + + + +AL+ G EG+G+R +E + Sbjct: 156 NLVRAIEELKQGGLWIVGADAMANHTYFEVSLAAPLALVFGGEGRGIRRLVREHCDILVS 215 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A A+ + Sbjct: 216 IPMFGQLNSLNVSTACALVTF 236 >gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 220 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP T D + L ++LD + DP N+G ILR+A F II Sbjct: 42 HQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNII 101 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R S + V+ K ASGAL + + NL + L+ + G+ + S + + Sbjct: 102 LPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKL 161 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ +++G EG+G++ E + + + M G + +LNV+ A + L Sbjct: 162 PDLNELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211 >gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68] gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68] gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 292 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140 W A++P V P+ + ++ G +H+G A+ PL S + ++++ + V+++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197 + D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191 Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236 + ++ S GF T+ ++ + + P E DK+ALI G E Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] Length = 251 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 9/169 (5%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ A L L+ + +S L L+VLD V DP N+G + RS A GI+T Sbjct: 74 HQGVIARVAALPFADFDDMLENLADSPLPLLVVLDQVQDPGNVGVLARSLYALGGAGIVT 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQ 222 K K+++GAL +P R++N++ AL K G GL DS Sbjct: 134 AKHGGAFLGPAAVKASAGALNKLPVARVNNISQALDKAIDMGINIYGAGLDDDSSSAYTA 193 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 EI I L+LG E KG+R ++ + H+ +LNV+ A A+ Sbjct: 194 EIHTPAI-LVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAGAM 241 >gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 229 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 31/238 (13%) Query: 49 LFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVG 106 L L G ++V AL NN ++ +LA+K H F +K + + DK Sbjct: 4 LMLCGKNSVLDALENNVKIEMLYVLASK------------VHEFKHIKNIKIEVKDKQFL 51 Query: 107 KEAV---HQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V HQG L +LD +++ + +++LDH+ DP+N GAILRSA AF I Sbjct: 52 DSLVKENHQGYVAVLKSLNFVSLDQMIKSKETILILDHLEDPYNFGAILRSANAFGIKNI 111 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I + + ++ + K +SG ++ + + IS D L+K W + S S P Sbjct: 112 IYPIKRAVDINSTVLKVSSGGFVNLRFYKSNSISATIDKLKKQGYW------IYSSSLDP 165 Query: 220 LEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++I N+ L++G E KG+ T++ + + ++ G +++LN S AA + Sbjct: 166 TSEDINKISFNNPSVLVIGNEKKGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223 >gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni] gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni] Length = 338 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 126/307 (41%), Gaps = 76/307 (24%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------- 87 F ++R +S+ LYG+H V AL R I++L K+ L+ NL Sbjct: 18 FLGRTRQSSE----LLYGIHPVLCALTFRHRDIYRLYV-KDTLSNCKDPDNLVEISTFQI 72 Query: 88 -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL------- 135 + PV VP + + ++ A HQG+ LE +P ++ + LL Sbjct: 73 TEKALKYGIPVTRVPVEKLKELSNSRA-HQGVILEVSPTTIQSISDLSIKNLLFSWNNLS 131 Query: 136 --------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++LDH+ D N G ILRSA F +I + S S +++K + Sbjct: 132 GNLPYAKKYHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISV 191 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDK 228 GA+E I + R+++ ++ + + GF +G +S+ KP E ND Sbjct: 192 GAMESILFYRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDN 251 Query: 229 -------IALILGAEGKGLRPKTQETATSMAHLHMPG--------------IIKALNVSN 267 + L LG+E +GL + + L +PG I +LNVS Sbjct: 252 TGVYPRPLILALGSESRGLSENVLNSCDLL--LRIPGYGDSTKLNQCISQTIPSSLNVSV 309 Query: 268 AAAVALY 274 AA + LY Sbjct: 310 AAGILLY 316 >gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila] gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila SB210] Length = 293 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 25/246 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102 F+YG++ AL++ R I +++ ++ ++ + AN PVK V + +D Sbjct: 37 FVYGLNPTMIALHSNKRNIVEVIINQHVQSHLPPKISNIINTAN-AKKIPVKFVDREKLD 95 Query: 103 KIVGKEAVHQGLALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++V + HQ + ++ PL L + +++ LD + DP N GAI+R+ D Sbjct: 96 RLVQNQP-HQNVVIKAEPLKYLRTKSSDILQGNMILFLDRITDPQNFGAIIRTCQYLGVD 154 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKK 218 ++ + + ++K++SGALE + + + L+ ++ W + GL+ S+ Sbjct: 155 NVVVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVEFLKDCQLRGWKVYSTGLNH-SEN 213 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA------HLHMPGI-----IKALNVSN 267 + E DKI L++G EG G+ PK + + + +L+ P + I +LNV++ Sbjct: 214 QISLEKLKDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTLYLNRPMVFPYTLIDSLNVNS 273 Query: 268 AAAVAL 273 A ++ + Sbjct: 274 ATSILI 279 >gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] Length = 290 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%) Query: 99 QTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +++I G +H+G LA P D + + + +L+ + D N+GAI RSA A Sbjct: 106 EELERITGFH-LHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNVGAIFRSAAAL 164 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ T R + + + G + +P+ RI+ L+ +H GF++ L+ D Sbjct: 165 GVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGFESAALALDED 224 Query: 218 KPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ ++ K+ALILG EG GL P T + M + +LNV+ A+AVA + Sbjct: 225 SLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLNVAAASAVAFW 284 Query: 275 ITQ 277 T+ Sbjct: 285 ETR 287 >gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] Length = 256 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDP 144 P + VP + ++++ K HQG+ +P+ L L V + LL++LD V D Sbjct: 61 PYQRVPVEKLNRVTRKN--HQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDV 118 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GAI R+A II + +A K++SGAL +P R NL + L + + Sbjct: 119 RNFGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRN 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q I + + K L +I+G+E G+ + + A S A + + G +++LN Sbjct: 179 SGLQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLN 238 Query: 265 VSNAAAVALY 274 VS A++V LY Sbjct: 239 VSVASSVVLY 248 >gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 278 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 17/202 (8%) Query: 87 LPHPF---PVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 LP P+ P+ T P + ++ G E L A+ PL SP + R+++ L+VL+++ Sbjct: 72 LPPPWDNIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPE-EICRSARRLVVLENIT 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-- 200 D NIGAI RSA A DG++ + + + G + IP+ + DA Q Sbjct: 131 DSTNIGAIFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHG--DAFQWP 188 Query: 201 -----KMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMA 252 + S GF T ++ +D+ +E + D K+A++LG+EG GL +T A Sbjct: 189 QPGIATLRSLGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTA 248 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A AV + Sbjct: 249 RIPMYHGVDSLNVAAAGAVIFW 270 >gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] Length = 259 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A + L+A + + ++VLD + DPHN+GAI+R+A G+I Sbjct: 80 HQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRTANQAGAHGVI 139 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR++ +A +A++++GA+ + P +++N++ ++++ G + S + + Sbjct: 140 IPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIW-FACADMSGELMYNC 198 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 I L++G+EG G+ +E + + M G I +LN S AA V Y Sbjct: 199 NLTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSY 249 >gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 272 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 7/178 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV P +++ G VH+G A++ PL + D +R ++ + V++ VND NIGA Sbjct: 78 PVYVAAPDIAEQVTGYH-VHRGALAAMQRKPLPA-AADVLRTARRVAVMESVNDHTNIGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ L+ + + GF Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDRWPGDLEPVRAAGFTL 195 Query: 210 IGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + KPL++ + D++AL+LGAEG GL + A + M I +LN Sbjct: 196 LALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253 >gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 220 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ AP T D + L ++LD + DP N+G ILR+A F II Sbjct: 42 HQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNII 101 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R S + V+ K ASGAL + + NL + L+ + G+ + S + + Sbjct: 102 LPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKL 161 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ +++G EG+G++ E + + + M G + +LNV+ A + L Sbjct: 162 PDLNELVILMGNEGEGIKRILMEKSDFVLRIPMHGNLSSLNVTVATGIVL 211 >gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] Length = 258 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIR 191 +++VLD V DPHN+GAILRS F ++ S + + ++A++++GA + + Sbjct: 108 VVIVLDSVTDPHNVGAILRSCDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAK 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250 + NL A+Q + S GF G +D+ +IK K +I+G+EG G+ QE Sbjct: 168 VPNLVRAVQILKSAGFWIYG--ADAGGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDE 225 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G I +LNVS AA V LY Sbjct: 226 IVSIPTCGKIDSLNVSVAAGVLLY 249 >gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 357 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 GL +ET +P D V + L++V +PHN+GAI+RS F G++ + + E Sbjct: 194 GLGVETYLQQAPAKDCV------LALENVGNPHNLGAIMRSCAHFGVQGVV-LQDTAMLE 246 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231 S ++A G EHI I TD L K + G+ + SS L Q +K+ L Sbjct: 247 SGAAVRTAEGGAEHIKGIDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVL 306 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 +LG E GL E + G +++LNVS A + L + QN Sbjct: 307 VLGQESDGLSDSIWEDGDIRLSIGGTGRVESLNVSVATGILLAEWWRQN 355 >gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 273 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%) Query: 99 QTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +++I G +H+G LA P D + + + +L+ + D N+GAI RSA A Sbjct: 89 EELERITGFH-LHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNVGAIFRSAAAL 147 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ T R + + + G + +P+ RI+ L+ +H GF++ L+ D Sbjct: 148 GVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGFESAALALDED 207 Query: 218 KPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ ++ K+ALILG EG GL P T + M + +LNV+ A+AVA + Sbjct: 208 SLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLNVAAASAVAFW 267 Query: 275 ITQ 277 T+ Sbjct: 268 ETR 270 >gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] Length = 251 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQGL-ALETAPLLSPTLDAVRNSQ---- 133 P+K++ + T+ K V KE + HQG+ A+ A + D + ++ Sbjct: 41 PIKSILREARKRDTLIKFVSKEKLDSLSFHEKHQGVVAIAAAYEYATVEDLFKKAEEKGE 100 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ D + DPHN+GAI+R+A G+I KR + ++ +AK ++GAL + P R Sbjct: 101 APFFILCDEIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPVAR 160 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 ++NL+ + ++ G + D L ++ I LI+G EG G+ +E Sbjct: 161 VTNLSRTIDELKDKGMWFV--CGDMGGELMYDLNLTGSIGLIIGNEGNGVSRLVKEKCDY 218 Query: 251 MAHLHMPGIIKALNVSNAAAV-ALYITQNHFAK 282 +A + M G I +LN S A V A I + K Sbjct: 219 IASIPMKGDIDSLNASVATGVLAFEIVRQRMGK 251 >gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 8/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148 VP I+K+ K HQG + AP+ + N S + ++LD ++D N G Sbjct: 54 VPEIKIEKL-SKGRNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A II +K S +A K+++GA+ +IP ++ ++ DA+ + S + Sbjct: 113 AIVRTAECTGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVK 172 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + + ALI+G+EG+G+ P + A L + G I++LNVS A Sbjct: 173 IVAATEKTDNTIYDVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVA 232 Query: 269 AAVALY 274 LY Sbjct: 233 TGAFLY 238 >gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira] Length = 472 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 54/276 (19%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARL-------------DWDA 85 F+YG H V +A+ RKI+ L + N+L +L +W Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEWSQ 199 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQ-------- 133 L V ++P + V ++ + T+ PL S D+ + + Sbjct: 200 ALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQDSYDDHRTQHNPRYP 259 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN+GAILRSA F D + + R S S V+ KS+SGA EHIP I I Sbjct: 260 FTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIH 319 Query: 194 NLTDALQ--KMHSWGF----QTIGLSSDSK-------KPLEQEIKNDKIALILGAEGKGL 240 + + + + W F ++ DSK K L E++N L+LG EG GL Sbjct: 320 DTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGDGL 379 Query: 241 RPKTQETATSMAHLHMP-----GIIKALNVSNAAAV 271 + + A + + P + +LNV+ A+ + Sbjct: 380 SKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGI 415 >gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL J1-023] Length = 201 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 15/153 (9%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 W F T S + ++ ++ +A+++G+ Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGS 201 >gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2] gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2] Length = 227 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 12/227 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID----KI 104 + +YG +++ S I ++L KN DA + + V + ID + Sbjct: 1 MIVYGKQIFHYIIDHHSHIIQRILLNKNV------DAGVWNKLQRLGVKIERIDNKKAQA 54 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG LE + + V+N L++L +V D NIG+I+RSA A DG++ Sbjct: 55 LAKGGNHQGFLLEIEDYVFTPFEVVKNFDFLVLLYNVTDIGNIGSIVRSAYALGVDGLVI 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + V+ +S+ AL+ +P NL DA++++ F + + Sbjct: 115 SGLKDLKMEGVIRRSSGAALD-LPIALQFNLYDAIKELQDRNFLVYAADMQGEDVRTKRF 173 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + K A++LG+EG+G+ K + + + M +LNV+ AAA+ Sbjct: 174 -HGKRAILLGSEGEGVPKKAVQKCNEILKIEMKRDFDSLNVAAAAAI 219 >gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 252 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W L Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + I ++ + QG+ + P + + +LL+V D V DP N+ Sbjct: 65 KGDYDVFEISAE-ISHLISETMTEQGV-FAVVTISEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D +I + + + + +S G+ HIP I+ ++L D + + G Sbjct: 122 GTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG D + K L K + +AL++G EG G+ P+ QE + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGISPELQERLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] Length = 249 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 111 HQGL-----ALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ A E APL L ++ + +LD + DPHN+GA++R+A G+ Sbjct: 69 HQGVIAYLSAYEYAPL-EELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG--FQTIGLSSDSKKPL 220 I KR + +A +A++++GAL + +++NL ++++ G F + +S L Sbjct: 128 IIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCGDMRGESMYKL 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 I L+LG EG+G+ +ET A + M G + +LN S A V Y Sbjct: 188 NL---TGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAY 238 >gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 269 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 4/186 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ Q + +I G L +L V+++ + VL++V +P N+GAI+ Sbjct: 81 PIYIAESQVLTQITGFHLTRGVLCAMRRKVLPSVESLVKDAHRIAVLENVTNPTNLGAIV 140 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210 R+A A D ++ T + A+ + G + IP+ + ++ + + GF+T+ Sbjct: 141 RNAAALGLDAVLFTHGSTDPLYRRAARVSMGTVFQIPWTFLPEGSE-IDTIKGLGFKTVA 199 Query: 211 -GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L +D+K + E+KN DK+A+ LGAEG GL P+T + M + +LNV+ Sbjct: 200 MALRNDTKDISDPELKNADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAAC 259 Query: 269 AAVALY 274 +AVA + Sbjct: 260 SAVAFW 265 >gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067] gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171] Length = 252 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V A+ + +LL +K +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEAIRQDGL-VVELLVSKGVSVPEEWLKGN 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I ++ + QG+ P + + +LL+V D V DP N+ Sbjct: 68 YDVFEIST----EISHLISETMTEQGV-FAVVTTTEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D +I + + + + +S G+ HIP I+ +NL D + + G Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWVANLEEEGV 180 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG D + K L K D +ALI+G EG G+ + Q + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] Length = 244 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 26/250 (10%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85 ++Y K+ +K R + NLFL G H V A N N +++F L + Sbjct: 11 KEYAKL--IQKKERDKT---NLFLVEGEHMVKEAYNANALQELFILEGIE---------- 55 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P F +TV Q ++K+ + + + + + L P V+ +L+ LD+V DP Sbjct: 56 -CPIQFNYETVTQQVLNKLSNQNSNSKMIGVCKKLNLKP----VKEENILL-LDNVQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A +F D I +K + + +S+ GAL +IP I+ ++L + ++K+ Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQ-TDLVEEIKKLQER 168 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + K Q+IK + K A+++G EG+G+R + + + + + M ++LN Sbjct: 169 NIEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEME-TFESLN 227 Query: 265 VSNAAAVALY 274 V+ A ++ +Y Sbjct: 228 VAIATSICMY 237 >gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +LD++ DPHN+GAI+R+A G+I K + +A +AK+++GA+ + P +++ Sbjct: 99 FLFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVT 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL+ ++++ G + D + + + I L++G EG G+ ++ A Sbjct: 159 NLSRTMEELKKEGLWFVCADMDGQVMYDLNLTG-PIGLVIGNEGSGVGDLVRKHCDLFAA 217 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 218 IPMAGEIDSLNASVAAGVLAY 238 >gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] Length = 247 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + ++LD + D N GAI R+ + Sbjct: 66 KN--HQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIY 238 >gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 271 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 17/261 (6%) Query: 29 DYKKMQSFNQKSRHTSQPE-NLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 DY + +S+H +PE LF+ + + AL R +A K + D Sbjct: 16 DYTNLTDIVLRSKH--EPEKGLFIAESSNVIRRALAAGLRPRSFFMAEKWVESMADVVEQ 73 Query: 87 LPHPFPVKTVPPQTIDKIVG-------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 P PV P+ ++ I G A+H+ + A LL+ ++ + + + Sbjct: 74 WPD-VPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGG-EGARRVAIFE 131 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+GA RSA A D ++ T R S + + G + +P+ RI + Sbjct: 132 DVVDHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIP-WPSGI 190 Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ++ + GF L+ SD L++ E KN+K A I G EG GL +T E S+ + M Sbjct: 191 GELQAAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPM 250 Query: 257 PGIIKALNVSNAAAVALYITQ 277 G + +LNV+ +AAV Y T+ Sbjct: 251 AGGVDSLNVAASAAVVFYATR 271 >gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 256 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 14/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ +K R + LFL G H V AL + + I QL+ +N WD + Sbjct: 13 KQWKKL--LMKKERDKT---GLFLIEGFHLVEEALKS-NISIIQLIVKENKAIPATWDIS 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V + I E QG+A L +D R + LL +D V DP N Sbjct: 67 ---GIPVAIVTEDVMKAISDTET-PQGIAAVCEQFLYGDIDWTRANVLL--IDAVQDPGN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A A D +I K + + + ++ G+L H+P IR NL + ++K+ Sbjct: 121 IGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPIIR-GNLREWIEKLQEQN 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G S ++ + AL++G EG G+ + + T ++ + G ++LNV+ Sbjct: 180 VPIYGTSLENGEDYRCINPPRPFALLVGNEGSGVHKELLQMTTKNLYIPIYGQAESLNVA 239 Query: 267 NAAAVALY 274 AA + LY Sbjct: 240 VAAGILLY 247 >gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii] gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii] gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii] Length = 415 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 135/329 (41%), Gaps = 75/329 (22%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTS---QPENLFLYGVHTVSAALNNP 64 F + +H +L+ N R ++ ++ F +K+ P ++YG ++V AAL Sbjct: 85 FGKRKAHELRLKENQRRMEQERTTHVHKFEKKNATQGLRPNPLMEYVYGTNSVLAALQGN 144 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAVHQGLALETAP 120 R+ + L L D L + V DK ++ AVH + LET P Sbjct: 145 KREYYSRLLHYGQL-----DPRLQKLAKSRNVELVETDKHRLNLMTNYAVHNNIILETKP 199 Query: 121 LLSPTLD------------------------------AVRNSQ---LLMVLDHVNDPHNI 147 L P + V+N + L + LD V DPHNI Sbjct: 200 LQPPEISHLQMVNPESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVVDPHNI 259 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHS 204 GAI+RSA D I+ +++ SA ++K++SGA+E +P + + Q+ Sbjct: 260 GAIMRSAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSESQQGGG 319 Query: 205 WGFQTIGLSSDSKK-------------PLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 W F T GL+ ++K LE + + L++G EG G+R T S Sbjct: 320 WTFVTAGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVR--TNLKMRSD 377 Query: 252 AHLHMP-------GIIKALNVSNAAAVAL 273 + +P G + +LNVS A A+ + Sbjct: 378 FFVEIPFGRDDEKGPVDSLNVSVATALLI 406 >gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 250 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 123/249 (49%), Gaps = 18/249 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++KK+ +K R + E + G H V AL + +I +++ ++N WD Sbjct: 14 KEWKKL--LTKKERDKT--ETFLVEGFHLVEEALK--ANQIAEIIISENKDMPPGWDYG- 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV V + I ++ E A+ + P+ + V+ + L++ D V DP N+ Sbjct: 67 --DIPVTMVTEEIIGQLADTETPQGIFAVCSQ---EPSSEEVKGKRFLLI-DAVQDPGNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D +I + + + + +SA G+ H+P +R NL+D + ++ Sbjct: 121 GTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGSHFHLPVLR-GNLSDWIGRLKESKV 179 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ + + +D AL++G EG G+ + A + A+L++P G ++LNV Sbjct: 180 PVYGTALENAREYTKYESSDSFALLVGNEGNGVNKEL--LANTAANLYIPIFGKSESLNV 237 Query: 266 SNAAAVALY 274 + AA + LY Sbjct: 238 AVAAGILLY 246 >gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 284 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G E L P L D + N++ + VL+ + D N+GA Sbjct: 82 IPVFTGSTEILSRLTGFELTRGVLCAMRRPALPSVEDLLANARRVAVLEGIVDHTNVGAA 141 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMHSW 205 RSA A D ++ T + + G + +P+ RI D L+++H+ Sbjct: 142 FRSAAALGIDAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGLERLHAC 201 Query: 206 GFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF T ++ SD+ L N +++A+I+G EG GL +T + M + + Sbjct: 202 GFSTAAMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCDFTVRIPMRHGVDS 261 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA Y Sbjct: 262 LNVAAASAVAFY 273 >gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog [Oryctolagus cuniculus] Length = 346 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 23/198 (11%) Query: 99 QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNS---QLLMVLDHVNDPHNIGAIL 151 Q +D + + VHQG+ +E +PL + T+ A + QL +VLD + DP N+GA+L Sbjct: 108 QKLDALC-RHQVHQGVCMEVSPLQPQPWTETMGAGPGADPQQLWLVLDGLQDPRNLGAVL 166 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D +IT++R S + V++K+++GA+E + +L LQ G+ G Sbjct: 167 RSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQARARQGWLVAG 226 Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHM 256 + S+ P+ + + L+LG EG GL + Q + T + + Sbjct: 227 AVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQEVQASCRCLLTILPGRQL 286 Query: 257 PGIIKALNVSNAAAVALY 274 P +++LNVS AA + L+ Sbjct: 287 PPGLESLNVSVAAGILLH 304 >gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] Length = 260 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128 L T++A+A+ A LP + V DK+ HQG+ +P TLD Sbjct: 52 LFYTESAMAKCPELAGLPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLDE 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V+ + L+ V DP N+G +LRSA AF DG+I + + + +++ GA IP Sbjct: 106 VKAGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIP 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQE 246 I + DA+ ++ + G + + +PL Q + +++G+EG+GL +T Sbjct: 166 VIEAGAMPDAITQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIA 225 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +S + M +++LN A ++ L+ HF Sbjct: 226 ACSSTVRIPMTDRVESLNAGIAGSILLW----HF 255 >gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 236 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 8/182 (4%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILR 152 PQ +D++ G HQG+ +P+ TL + V + L+ + +P N+GAI R Sbjct: 51 PQ-LDRLAGT-GKHQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIAR 108 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S F G++ +R S + V K+++GAL H+ +R+ L + L G L Sbjct: 109 SVELFGGVGLLLPQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGNVYAL 168 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + ++K +A ILG+EGKG+ + E A + G + +LNVS AA +A Sbjct: 169 ETGGRDIRDSQLKR-PLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIA 227 Query: 273 LY 274 + Sbjct: 228 AW 229 >gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 252 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V A+ + +LL +K +W Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEAIRQDGL-VVELLVSKGVSVPEEWLKGN 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + T I + + QG+ P + + +LL+V D V DP N+ Sbjct: 68 YDIFEIST----EISHFISETMTEQGV-FAVVTTTEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D +I + + + + +S G+ HIP I+ +NL D + + G Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG D + K L K D +ALI+G EG G+ + Q + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris] Length = 346 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 21/196 (10%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151 Q +D + + VHQG+ +E +PL V ++ L +VL+ + DP N+GA+L Sbjct: 107 QKLDALC-RHQVHQGVCMEVSPLKPRPWTEVEEARPGDDPRRLWLVLERLQDPRNLGAVL 165 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D +IT+ R S + V++K+++GA+E + +L LQ G+ G Sbjct: 166 RSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKARQGWLVAG 225 Query: 212 LSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPG 258 + + EI + L+LG EG GL Q + T + +P Sbjct: 226 TVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAVQASCQLLLTILPGRQLPP 285 Query: 259 IIKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 286 GLESLNVSVAAGILLH 301 >gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 178 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 I K S + + + K A GA E IP + ++NL L+K+ G +G Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVG 175 >gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 267 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 1/177 (0%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +IVG LA+ P + V ++ + VL+ VND N+G++ R+A Sbjct: 85 EVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLGSMFRNAAGLG 144 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SK 217 D ++ R S + + G + +P+ R+ D L + GFQ I ++ D + Sbjct: 145 VDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQLIAMTPDPAA 204 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + +++AL+LGAEG GL + A + M +LNV+ AAA+A Y Sbjct: 205 RNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVATAAAMAFY 261 >gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 234 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD + DPHN+GAI RSA+ F+ DGII K + + K++ GA++++ +++N Sbjct: 92 LLILDKMEDPHNLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGAVDNVNICQVTN 151 Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L+ ++K+ GF L D+ K ++ + K+A+I+G EGKG+ + + Sbjct: 152 LSQTIEKLKKAGFWIYAALLEGDNIKDVDF---SGKVAIIIGNEGKGISDNLIKASDFKV 208 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + +LN S AA + +Y Sbjct: 209 KIPNLSEFDSLNASVAAGIIMY 230 >gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032] gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter turicensis z3032] Length = 257 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+GAI+RS F G++ + S ES ++A G EH+ I Sbjct: 107 DEDCVLALEDVGNPHNLGAIVRSCAHFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPI 165 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +DAL + + G+ + SS PL + K+ L+LG E +G+ TQ A Sbjct: 166 TGDSFSDALAQFRAAGYAIVTTSSHKGTPLFKATLPKKMVLVLGQESEGISEATQANADL 225 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 226 SLSIDGTGNVESLNVSVATGVLLAEWWRQN 255 >gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia coli [Photorhabdus asymbiotica] Length = 338 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 25/248 (10%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102 E +YG + A N S I + ++ R L W A + V V + Sbjct: 98 EETRIYGENACQAMFKNRSEAIVRAWFIESVTPRFRNALKWMAANRKAYHV--VDEAELT 155 Query: 103 KIVGKE---------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 K+ G E GL +ET +P D V + L+ V +PHNIGAI+RS Sbjct: 156 KVSGTEHHGGVCFLIKKRSGLDVETYLKDAPVKDCV------LALEDVGNPHNIGAIMRS 209 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F G++ + + ES ++A G EHI I +LT L K G+ + S Sbjct: 210 CAHFGVQGVV-LQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRKAGYTIVTTS 268 Query: 214 S-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S L + +K+ L+LG E GL T E + G++++LNVS A + Sbjct: 269 SHKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDMSLFVGGTGLVESLNVSVATGIM 328 Query: 273 L--YITQN 278 L + QN Sbjct: 329 LAEWWRQN 336 >gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] Length = 249 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 19/241 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ ++I ++L + L+R ++ PV+ VP + +D+ Sbjct: 3 ENEMVFGIRAVIEAIQ-ADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ E + P + + +++LD V D N GAI R+ Sbjct: 62 LTRKN--HQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ R S + +A K+++GAL +P + ++T+A++ + + G + + + S Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVK---VYAAS 176 Query: 217 KKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K E IK D +A+++GAE G+ SM + G I +LNVS A+++ + Sbjct: 177 EKAFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILV 236 Query: 274 Y 274 Y Sbjct: 237 Y 237 >gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii ATCC 33406] Length = 268 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 9/182 (4%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151 + +D++ K HQG+ + + +LD + ++ LL++LD V D N GA+ Sbjct: 76 EKLDRVTRKN--HQGVICYLSAINFASLDNIVSACFESGKNPLLVMLDRVTDVRNFGAVA 133 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D +I R + ++ K+++GAL HIP R+ +L D ++ + G + I Sbjct: 134 RSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLIDTVKYLKQCGLRIIA 193 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + + E D +++G+E G+ A + + M G I +LNVS A + Sbjct: 194 CSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVTIPMSGHINSLNVSVATGM 253 Query: 272 AL 273 L Sbjct: 254 IL 255 >gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum ferrodiazotrophum] Length = 259 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 LE +P ++P+ L+ +D V DP N+GA+LR+ A G++ +R S Sbjct: 103 LEASPGIAPSP--------LVAVDGVQDPRNLGALLRTCDAAGVGGVLIPRRRVAPLSQT 154 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALIL 233 +AK+++GAL +P +RI NL+ +L+++ G+ + LS D + + L++ Sbjct: 155 VAKTSAGALFTLPLVRIGNLSGSLRQLKKEGYAIAALDLSGDPLP---EGPLPGPLVLVV 211 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GAE KG+ + A L M G +++LN+S AA + LY Sbjct: 212 GAEEKGVTRPVLDLADWRFRLPMKGKVQSLNLSVAAGIFLY 252 >gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1] Length = 378 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 64/293 (21%) Query: 6 KKKSEKIFSLKDSHY---AKLRRNHRDYKKMQSFNQKSRHT-SQ----PENLFLYGVHTV 57 ++ E F K +H+ K R RD K + +Q R T SQ P +LYG + V Sbjct: 53 REDKESWFKRKHAHHHAKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNPV 112 Query: 58 SAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 AAL R+ F L N ALAR PVK+ + ++ Sbjct: 113 LAALKAQQRESFGTLYLHNPKSTPKLAEILALAR-------ELELPVKSEYGKHDLNLMT 165 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ---------------------------LLMVLD 139 VH G+ +ET P+ L + S+ L + +D Sbjct: 166 NNGVHNGIVVETKPIEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYID 225 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++DPHN+GAILRSA D I+ ++R S V++K++SGALE +P Sbjct: 226 EISDPHNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFF 285 Query: 200 QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLR 241 ++ S G+ I + S+ L+ +++N L++G+EG+G+R Sbjct: 286 EESRSNGWTIISSVAPSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIR 338 >gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX] gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX] Length = 268 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 9/189 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIG 148 PV V +++VG +H+G+ + PL PT+ + V +++ ++VL+ + D N+G Sbjct: 77 PVYVVDDAVAEQLVGFH-IHRGILASFHRKPL--PTVPEVVASARRIVVLEDIVDHTNVG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA D + R + K + GA+ +PY R+++ L+ + GF Sbjct: 134 AIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGFT 193 Query: 209 TIGLSSDSKK-PLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265 + L+ + PL + + D K AL+ G+EG GL + + A A + M + +LNV Sbjct: 194 LVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLNV 253 Query: 266 SNAAAVALY 274 + AAA+A Y Sbjct: 254 TAAAAIACY 262 >gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL S4-378] Length = 201 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 12/127 (9%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 V+ VP Q I+K+V HQG+A + A LD A ++LD + DPH Sbjct: 54 VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202 N+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ + LQK Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171 Query: 203 HSWGFQT 209 W F T Sbjct: 172 GLWIFGT 178 >gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 360 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 23/198 (11%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 Q +D + + VHQG+ +E +PL V + QL +VL+ + DP N+GA+L Sbjct: 112 QKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLERIQDPRNLGALL 170 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA D IIT+ R S + V++K+++GA+E + +L LQ G+ G Sbjct: 171 RSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKAREGWLVAG 230 Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHM 256 +S S+ P+ ++ + L+LG EG GL Q + T + + Sbjct: 231 TVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQASCQLLLTILPGRQL 290 Query: 257 PGIIKALNVSNAAAVALY 274 P +++LNVS AA + L+ Sbjct: 291 PPGLESLNVSVAAGILLH 308 >gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii DSM 2075] gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii DSM 2075] Length = 248 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 28/244 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G H V+ AL + ++ LL A+ RL +A V+ + + +D++ Sbjct: 7 LIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLV-EAARAAGLKVEKIERRRLDQMA 65 Query: 106 GKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G AVHQG+AL A LL+ +A R + L++V+DHV DPHN+GA+LRSA A Sbjct: 66 GG-AVHQGVALRVAAQGRYAAWDELLAVLEEAGRRA-LVLVVDHVQDPHNLGAMLRSAAA 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214 G++ K + + +AK+A+GAL + R++N++ AL G + IGL S Sbjct: 124 AGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVANISQALA-----GLKEIGLWSVA 178 Query: 215 ----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 P +++ +A+++G+E KG+ P Q+ +A L + +++LN S AA Sbjct: 179 AVARGGAAPWALDLRG-PLAVVVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAG 237 Query: 271 VALY 274 V L Sbjct: 238 VMLM 241 >gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1] gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5] gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5] gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1] Length = 228 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 4/167 (2%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 K A HQG E P TL ++ ++VL ++D N+GA+ RS A +G+I Sbjct: 61 KGANHQGFLAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVI-LD 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + P E L +S+ GAL +P+ N+ D + ++ G G + + ++ + Sbjct: 120 LHMPYEG--LVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYG-AHIRGQDVKNAVFT 176 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL LG+EG GL + + H+ M G + +LNVS A A+ + Sbjct: 177 HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223 >gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894] Length = 357 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+GAI+RS F G++ + S ES ++A G EH+ I Sbjct: 207 DEDCVLALEDVGNPHNLGAIVRSCAHFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPI 265 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +DAL + + G+ + SS PL + K+ L+LG E +G+ TQ A Sbjct: 266 TGDSFSDALAQFRAAGYAIVTTSSHKGTPLFKATLPKKMVLVLGQESEGISEATQANADL 325 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 326 SLSIDGTGNVESLNVSVATGVLLAEWWRQN 355 >gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140 W A++P V P+ + ++ G +H+G A+ PL S + ++++ + V+++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197 + D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 132 IVDHTNVGALMRSAAALDVDVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191 Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236 + ++ S GF T+ ++ + + P E DK+ALI G E Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7] Length = 247 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 21/203 (10%) Query: 92 PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV-------RN 131 PVKT+ + TI V KE + HQG+ A ++D + Sbjct: 37 PVKTITREARKQHTIISYVSKERLDQLSETHHHQGVIAIAAAYDYASVDDILAKAREKGE 96 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +LD + DPHN+GAI+R+A G+I K + +A +A++++GAL P + Sbjct: 97 EPFIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGLTATVARTSAGALNFTPVAK 156 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL A+ ++ G + + Q + I L++G EG+G+ +E Sbjct: 157 VTNLGAAMDELKKEGLWFVCADMKGEVMYRQNLTG-PIGLVIGNEGEGVSRLVREKCDFT 215 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M G I +LN S AA V Y Sbjct: 216 ASIPMKGDIDSLNASVAAGVLAY 238 >gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 278 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 114/258 (44%), Gaps = 24/258 (9%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 R+ +Q LF+ + L S + LLA + R + +P P+ V T Sbjct: 23 RNLAQHSGLFIVEGDKLVDRLITSSFAMHSLLAEPDMAER--YATQVPAEVPIYVVDRAT 80 Query: 101 IDKIVGKEAVHQGL-------------ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDP 144 + +G H+G+ L T P + A R + L++VL V DP Sbjct: 81 LQATIGFN-FHRGILGCGYRREQPTVEQLLTTPPTVAQVTAGRAADIGNLILVLAEVQDP 139 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G+ILRSA AF C G++ R + + + + + G+ IP SNL L+ + Sbjct: 140 TNLGSILRSAAAFGCRGVVLGPRCADPFARRVIRVSMGSALTIPITVSSNLACDLESIAE 199 Query: 205 WGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q T + SD K L + AL+LG+EG GL P+ + M +L Sbjct: 200 KGYQLTATVLSDRAKKLGDLQLDVPRALLLGSEGNGLAPEWIAMCREHVTIPMAWGTDSL 259 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ AAAV LY HF+ Sbjct: 260 NVAIAAAVLLY----HFS 273 >gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 256 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 14/247 (5%) Query: 41 RHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVK 94 + + P++ FL YG V AL +P+ + +++ A+A + A PV+ Sbjct: 4 KQATSPKDRFLTVYGRKPVLEALRDPALDVDKVIMADTVRGPAIAEIQRAAEA-RGVPVR 62 Query: 95 TVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAI 150 + + G QG LA AP + P A+ L+VLD + N+G I Sbjct: 63 RASAHRVKVLAGNGKQDQGVLADVVAPRMRPLAAALEGRTPPSPLLVLDGITTSANVGMI 122 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A G++ +R + ++ K+++G P +R + +A++ + G+ Sbjct: 123 LRTATAAGIPGVVVPRRGVAALDPLVVKASAGVAFRAPVLRCATAVEAVESLVEVGYTVY 182 Query: 211 GLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L + + D ++A +LG E +G+ + + MPG +++LNVS Sbjct: 183 ALGARADAESTSLFDTDVPSRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSA 242 Query: 268 AAAVALY 274 AAAV + Sbjct: 243 AAAVVCF 249 >gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] Length = 276 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D I G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL + E + A + M +LNV+ A+ +AL Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASGIAL 269 >gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 282 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + VLD + D N+GAI+RS A DGII + + + G + +P+ R +N Sbjct: 137 IAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADPLYRRAIRVSMGTVFQVPWTRANN 196 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSM 251 L + L +H + T L+ SD+ L+Q +DK+A + G EG GL +T T + + Sbjct: 197 LIEVLDLLHEAHYTTAALALSDNAITLDQFNAENHDKVAFLFGNEGHGLSDRTLATVSRV 256 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M G + +LNV+ +A+ Y T+ Sbjct: 257 VTIPMAGDVDSLNVAATSALVFYATR 282 >gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 303 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 13/200 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV V + + G E LA+ +L ++N++ + +L+ + + NIGA Sbjct: 102 IPVFIVTHEQFRAVTGYEVTRGALAVFERLVLPRPEALLKNARRVAILEDIVNYTNIGAA 161 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----------LTDALQ 200 RSA A S D ++ T A+ + G + +P+ RI + + Sbjct: 162 FRSAAALSIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGSTGDWVESGID 221 Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +H +GF+T+ L+ D PL +++AL+LG EG GL +T+ MA + M Sbjct: 222 LLHRFGFKTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMA 281 Query: 258 GIIKALNVSNAAAVALYITQ 277 I +LNV+ A+AVA + T+ Sbjct: 282 PGIDSLNVAAASAVAFWETR 301 >gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232] gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 233 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 VK V +DK+V HQG LE +++++LDH+ D +N+G I Sbjct: 40 VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A F II K+ + + K +SG + +I ++++ A+ K+ F Sbjct: 98 IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K QEI+ N A+ILG EG G++ + + + + G + +LNV+ A Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217 Query: 270 AVALYITQNHFAK 282 + L+ + + K Sbjct: 218 GIILFFLKQNIKK 230 >gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] Length = 246 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 19/238 (7%) Query: 50 FLYGVHTVSAALNNPSR--KIF--QLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDK 103 ++G+H+V AL KI+ + L ++ A+ RL + +P V VP + +++ Sbjct: 6 IIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIP----VLEVPAERLNR 61 Query: 104 IVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG A +L P + L+++L+ V D N GAI RSA Sbjct: 62 F--TRGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ +R S S SA +++GAL IP R+ +++ A+ + G Q + + + Sbjct: 120 AGAHALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++G+E +G+ P+ AT + G I +LNVS AA + L+ Sbjct: 180 ENTYYTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLF 237 >gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Monodelphis domestica] Length = 425 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 31/260 (11%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPP 98 S P L+G+ + AL R + +LL K + A + DA PV+ + Sbjct: 115 SAPRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAEALG-IPVQLMRR 173 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHNIGA 149 + +D + + +HQGL +E APLL R ++ L ++L+ + DP N+GA Sbjct: 174 RELDALC-RGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGA 232 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-- 207 +LRSA D +IT++R S + V++K+++G +E + +L L+ G+ Sbjct: 233 VLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLV 292 Query: 208 -QTIGLSSD-----SKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHL 254 T+G S P+ ++ + L+LG EG GL + + T + Sbjct: 293 AGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTILPGR 352 Query: 255 HMPGIIKALNVSNAAAVALY 274 +P +++LNVS AA + L+ Sbjct: 353 ELPPEVESLNVSVAAGILLH 372 >gi|328725718|ref|XP_003248590.1| PREDICTED: putative TrmH family tRNA/rRNA methyltransferase-like [Acyrthosiphon pisum] Length = 344 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 11/154 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDP 144 V+TVP ID + + HQG+A + AP +S T D + + L++LD + DP Sbjct: 50 VQTVPKSKIDYLT--DVPHQGIAAQIAPYPYKELEDFISETKD-IDHVPCLLMLDGLEDP 106 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+I+R+A A DGII KR S +A +AK+++GA++H+P IR++NL ++++ Sbjct: 107 HNLGSIMRTADAIGIDGIIIPKRRSVQLNATVAKASTGAIQHVPVIRVTNLPQTIERLQE 166 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + G + + Q + +++G+EG+ Sbjct: 167 VRYWVAGTDAKNATDYRQMDAGMPLVIVIGSEGE 200 >gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 279 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 FPV + + G E LA P L D + +++ + VL+ V + NIGA+ Sbjct: 81 FPVLVATREQFRALTGYEVTRGALAAFERPPLPRVEDLLASARRVAVLEDVTNYTNIGAV 140 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMHSWG 206 RSA A D ++ T A+ + G + +P+ RI + + + + S G Sbjct: 141 FRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVPLLRSLG 200 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T L+ SD L E DK+AL+LG EG GL P T + M + +L Sbjct: 201 FSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGLAPSTIANCDYTVKIPMDHDVDSL 260 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 261 NVAAASAVAFW 271 >gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 268 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 11/203 (5%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQL 134 +ALA + DA + VP + +++ G VH+GL A P+L+ D V ++L Sbjct: 66 DALALVGEDAE------IYVVPAEIAERVTGY-TVHRGLLASMHRPVLASVEDVVEGARL 118 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VL+ + D NIGA RSA A D ++ T R + + + G + +P+ R+ Sbjct: 119 VVVLEDIVDHTNIGAAFRSAAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLPE 178 Query: 195 LTDAL-QKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++A + SD L+ + ++++AL++GAEG GL A ++ Sbjct: 179 WSEAKPLLHAAGLHLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTV 238 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G + +LNV+ A+AVAL+ Sbjct: 239 VTIPMAGGVDSLNVAAASAVALW 261 >gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] Length = 263 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 72/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+MVLDH+ DP N+G ILR+A GI+ + + +S G++ +P++ + Sbjct: 114 LIMVLDHLQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVE 173 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L +Q + G T + ++E + A ++G EG GLR + + A Sbjct: 174 DLGKGIQDLKDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVK 233 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A++V ++ Sbjct: 234 IPMLGQVESLNAAIASSVLMF 254 >gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 250 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%) Query: 94 KTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146 + V P ++K+ G +H G +A+ AP + A V+ + L+VLD + + HN Sbjct: 53 RCVEPAELEKVGGT--LHHGGIVAVVEAPEMREPAAADLTAWVKRCEPLLVLDRIGNAHN 110 Query: 147 IGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 +GAI R+A F +I + PSE+A + A G + H+ R+ +L L+ + Sbjct: 111 LGAIARTAAFFGLPRLILPRDPAAAQPSEAAY--RVAEGGMTHLELARVDDLPAFLRSLV 168 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G+ IG ++ P Q IAL+LG E GL + T + + G +++L Sbjct: 169 AAGYDVIGAATRGGLPQAQSHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESL 228 Query: 264 NVSNAAAVALY 274 NVS A AV ++ Sbjct: 229 NVSVAGAVLIW 239 >gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 246 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L S ++LD + D N GAI R+ Sbjct: 66 KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCECAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIY 238 >gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1] gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1] Length = 242 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 118/245 (48%), Gaps = 15/245 (6%) Query: 47 ENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ENL +YG H V+ + I ++ + + ++D N F + V + I+ +V Sbjct: 2 ENLSLIYGKHAVNEFIKKHPNLIKKIYISSDF--KIDKSNN---EFQILKVDLKKIENLV 56 Query: 106 GKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSC 159 G EA HQG+ E L+ +++ + L+++LD + DP+N GAI+RS+ Sbjct: 57 GNEANHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGV 116 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSK 217 D I+ ++ + K+++G + + +++NL++A++ + GF + L+S+S Sbjct: 117 DQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESN 176 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + N + A+++G E G+ + + + I + N + A ++ LY Sbjct: 177 DMRKVDFAN-RTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVA 235 Query: 278 NHFAK 282 N+ K Sbjct: 236 NYIGK 240 >gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5] gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5] Length = 240 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185 + + +V+DH+ DP N+G +LR+ G +I+ R SP V+ K++SGA+ Sbjct: 87 ECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGGVGALISKDRTSPINETVV-KASSGAVF 145 Query: 186 HIPYIRISNLTDAL---QKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKG 239 H+ ++S+L+ L QKM W F D ++ PL +AL+LG+E KG Sbjct: 146 HLKISKVSSLSRELKNFQKMGGWVFAVEKGGKDIREVDIPLP-------VALVLGSEDKG 198 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + + + M G + +LNV +A A+A++ T Sbjct: 199 VSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWET 235 >gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] Length = 256 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD V +P N+G ILRS A G+I +R ++AK+++G L H P +R ++ Sbjct: 113 LILLDRVTNPQNLGMILRSTTAAGITGVIVPERGCAPLGPLVAKASAGTLFHAPVLRCTS 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++AL + GF LSS ++ +E K +LG E +G+ P + + Sbjct: 173 SSEALDALLGLGFTCYTLSSHTESNFFEEHIPAKAVFVLGNESEGVAPDIASRCQAKVRI 232 Query: 255 HMPGIIKALNVS-NAAAVALYI 275 M +++LNV+ AA +A Y+ Sbjct: 233 PMHNGVESLNVAITAALIAYYL 254 >gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1] Length = 285 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 24/205 (11%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147 P+ T P + K+ G A+ +G+ A+ A L P++++V ++ + VL+ V +P N+ Sbjct: 78 IPIYTAPFDVLTKLTGF-ALTRGMLCAMRRAEL--PSVESVCEHAARIAVLEEVMNPTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTD-- 197 GAI RSA A D ++ T S A+ + G + IP+ I+ N D Sbjct: 135 GAIFRSAAALGMDAVLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFDTLGLAHNKADHG 194 Query: 198 -----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249 + ++HS GF+T + L +D+ + E+K D++A+ILG EG+GL+ +T +++ Sbjct: 195 IWPEFGMGQLHSMGFRTASMALRNDTIDIHDPELKQIDRLAVILGTEGEGLKTETIDSSD 254 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 255 YTVKIPMYHGVDSLNVAAASAVAFW 279 >gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 279 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 FPV + + G E LA P L D + +++ + VL+ V + NIGA+ Sbjct: 81 FPVLVATREQFRALTGYEVTRGALAAFERPPLPRVEDLLASARRVAVLEDVTNYTNIGAV 140 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMHSWG 206 RSA A D ++ T A+ + G + +P+ RI + + + + S G Sbjct: 141 FRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVPLLRSLG 200 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T L+ SD L E DK+AL+LG EG GL P T + M + +L Sbjct: 201 FATAALALSDEAIYLHDERLRACDKLALVLGTEGDGLAPSTIANCDYTVKIPMDHEVDSL 260 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 261 NVAAASAVAFW 271 >gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] Length = 283 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 17/199 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV P + K+ G E L P L D VR ++ + VL+ + + N+GAI Sbjct: 82 PVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHTNVGAIF 141 Query: 152 RSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLT------------DA 198 RSA A D ++ T Y P + + + G + +P+ RI D Sbjct: 142 RSAAALGIDAVLVTPACYDPLYRRAV-RVSMGTVFQVPWTRIGEEAGAGATGTGGWAPDG 200 Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH 255 + +H GF+T + +D PL+ N +++AL+ G EG GL T + Sbjct: 201 VPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDYTVRIP 260 Query: 256 MPGIIKALNVSNAAAVALY 274 M + +LNV+ A+AVA + Sbjct: 261 MACGVDSLNVAAASAVAFW 279 >gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 268 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 12/182 (6%) Query: 106 GKEAV-HQG----LALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFS 158 G++AV HQG LA + L AV + L ++ LD V DP N+G + R+ A Sbjct: 82 GRDAVAHQGVVARLAATSFCELEHIFAAVEQAPLPIILALDQVQDPGNVGTLCRTLYALG 141 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--- 215 GII + S +SA+GALEH+P R++NL AL G G Sbjct: 142 GAGIILPRHNSAYLGPAARRSAAGALEHLPVARVTNLGHALDSAEEAGLTIYGAGGQNGP 201 Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S + ++ + L+LG E KGLRP + M + + +LNV+ A A+ L Sbjct: 202 ASVDAFAEPVRLPAV-LVLGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILLG 260 Query: 275 IT 276 +T Sbjct: 261 LT 262 >gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] Length = 258 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 70/141 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LLMVL+ + DP N G I+R+ G+ TK + + ++ G++ IP+ + Sbjct: 110 LLMVLEDLQDPGNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVE 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ QK+ G + + K ++E D A ++G EGKGL + + A + Sbjct: 170 DVVSLKQKLQGRGIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + AA + +Y Sbjct: 230 IPMCGQVESLNAAMAAGILMY 250 >gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198] gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198] Length = 251 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 17/251 (6%) Query: 31 KKMQSFNQKSRHT-SQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 KK +QK H +QP E+L +YG T L + I ++ +K + + + Sbjct: 2 KKQLRHDQKPTHNPAQPKQEDLIVYGKQTSLYILEQMPQIIKEVYFSK------EMERGV 55 Query: 88 PHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 H F P ID + + K HQG+ L+ + L ++ S+ L++L + D Sbjct: 56 FHQFAKIHKPILKIDNKKAQALSKNGNHQGVFLKISALEYTPFKILKKSEKLLILHGITD 115 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG+I RSA DGI+ S VL +++ GA+ +P+ + N+ D + ++ Sbjct: 116 TGNIGSIFRSAYCLGVDGIVLCGVRGFSIEGVL-RTSVGAILQMPFCVVENILDVIHELK 174 Query: 204 SWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + +T+ L +D++ E I K AL LG+E GL + + + M + Sbjct: 175 NE--KTLCLGADARGEEEGRIAGVQKWALFLGSENTGLPSQVLSKLDRILAIKMHRGFNS 232 Query: 263 LNVSNAAAVAL 273 LNV AA + + Sbjct: 233 LNVGVAAGILI 243 >gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330] gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513] gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1] gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1] gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99] gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 276 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL + E + A + M +LNV+ A+ +AL Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASGIAL 269 >gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 276 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL + E + A + M +LNV+ A+ +AL Sbjct: 233 EGEGLPSRLLERLKT-ARIPMSTTFDSLNVATASGIAL 269 >gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL + E + A + M +LNV+ A+ +AL Sbjct: 233 EGEGLPSRFLERLET-ARIPMSKTFDSLNVATASGIAL 269 >gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium G37] gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 242 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 111 HQGLA--LETAPLLSPT---LDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQ L L+T LL P + V N + L++LD + DP+N GAILR+ +A DGII Sbjct: 66 HQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGII 125 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE- 221 K + + K++ G++ + ++++NL+ + K+ GF T+ + D KP++ Sbjct: 126 FKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ K LI+G E +G+ + A + M I +LNVS A + L+ +N Sbjct: 186 RKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAWKN 242 >gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group] Length = 783 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 13/197 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102 E ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D Sbjct: 386 EGQWIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALD 444 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A L + A LL+VLD V DPHN+GA LRSA Sbjct: 445 G-VGGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAA 503 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ + Sbjct: 504 AAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGE 563 Query: 216 SKKPLEQEIKNDKIALI 232 + L Q IALI Sbjct: 564 ATASLYQLDLKGNIALI 580 >gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823] gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis DSM 16823] Length = 274 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 20/266 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 ++N R+ ++ FNQ R+ + P ++ +YG+ V A+ N +I ++L K Sbjct: 4 KKNDRE-ERGGGFNQDKRNFERKPKEDPTDI-IYGIRVVIEAIKNEV-EINKILIQKGID 60 Query: 79 ARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL- 134 L + + ++ VP + ++K+ HQG+ T+P+ ++ + + L Sbjct: 61 KDLFEELRTVLTGKEYQLQFVPVEKLNKLTVNN--HQGVIAFTSPVEYKNIEELCDQWLS 118 Query: 135 ------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++VLD + D N G I R+A D I+ + S SA K+++GAL IP Sbjct: 119 EGKEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIP 178 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L ++L + GFQ + + SK E A+I+G+E G+ + + Sbjct: 179 VCKTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMS 238 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G I +LNV A + LY Sbjct: 239 DVRLSIPMAGDISSLNVGVATGMILY 264 >gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 272 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 32/268 (11%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNP--------SRKIFQLLATKNAL 78 RDY ++ ++R E L+L GV + AL SR F+ LA Sbjct: 19 RDYTALKDVQLRARREPA-EGLYLAEGVEVIRRALAAGHVPRSLLLSRSRFEDLADV--- 74 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRN 131 LP V P + G + +H+G A + P L +L A Sbjct: 75 --------LPAGATVFVAPVAAFADLTGVD-LHRGALASMQRPAQRSVPDLLASLPA--G 123 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L+VL+ V D N+GA+ RSA AF DG++ + R + + + G + H+P+ R Sbjct: 124 PARLVVLEDVVDHTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWAR 183 Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ L + S GF L+ ++ L +++AL+LG EG GL + A Sbjct: 184 AASWPGDLDLLRSAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADL 243 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M + +LNV+ A+AVAL+ T+ Sbjct: 244 VVRIPMDPRVDSLNVAAASAVALWETRR 271 >gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 267 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 5/187 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV + ++++ G +H+G LA P L + +++++ +++L+ + D N+GA+ Sbjct: 77 PVYVGESELLEQLTGFN-LHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTNVGAV 135 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T R + + + G + +P+ RI N + + GF Sbjct: 136 FRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAGFHLA 195 Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +D L+ N +++ALILG EG GL +T E A S+ + M + +LNV+ Sbjct: 196 ALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSLNVAA 255 Query: 268 AAAVALY 274 A+AV +Y Sbjct: 256 ASAVGMY 262 >gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] Length = 251 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ + ++ LD + N +++LD + DP N+G I+R+A AF+ D II K + Sbjct: 85 QGI-IAVCRIVKKELD-INNYSKVLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSL 142 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIA 230 + +S G+ HI +L + + +MH + L +D K +EQ + K+A Sbjct: 143 YGQKVIRSTQGSNFHIDCFDNIDLVELIDEMHEFNIFATSLKAD--KYIEQLDNITGKVA 200 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278 ++ G EG G+ + ++ + MPG ++LNVS AA + + YI+ N Sbjct: 201 VVFGNEGAGVSEEILSKVNNLLKISMPGRAESLNVSIAAGIVMHYISTN 249 >gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 218 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+ V DP N+G ++R+A A DG++ +++ + + +S G+ H+P + +N+ Sbjct: 77 LVLEDVQDPGNVGTMIRTADAAGLDGVLISEKTADIYNQKTLRSMQGSHFHLP-VWCTNV 135 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +A QK+ S G + LS DS E K + AL++G EG G+ + + A +AH Sbjct: 136 YEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGE-FALVMGNEGNGISEQMTKQADILAH 194 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A + L+ Sbjct: 195 IIMPGQAESLNVAVATGIVLF 215 >gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1] Length = 260 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +LD + DPHN+GAI+R+A G+I KR + +A + K+++GA+ + P +++ Sbjct: 112 FFFILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVT 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ ++++ G D + + + + L++G EG G+ +E + Sbjct: 172 NISKTIEELKDRGMWFACADMDGELMYKCNLTG-SLGLVIGNEGSGVSRLVKEKCDYVVS 230 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 231 VPMKGDIDSLNASVAAGVLAY 251 >gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] Length = 256 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL P D + ++ ++V++ VND N Sbjct: 60 PAPVYAVAPELAERVTGYH-VHRGALASMQRKPL--PAADELLATARRVVVMESVNDHTN 116 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 117 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAG 176 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ + L+ D+K E + +++AL+LGAEG GL + A + M + +L Sbjct: 177 FRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSL 236 Query: 264 N 264 N Sbjct: 237 N 237 >gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 272 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V P+ +++ G VH+G LA L D +R ++ ++V++ VND NIGA Sbjct: 77 VPVYVVDPELAERVTGYH-VHRGALASMRRKPLPAAADLLRGARRVVVMEAVNDHTNIGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ +L + GF Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEQWPGSLAAVTEAGFDL 195 Query: 210 IGLSSDS-KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D+ + L++ + D++AL+LGAEG GL + A + M + +LN Sbjct: 196 LALTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALAAADEPVRIPMSHGVDSLN 253 >gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum rubarum] Length = 192 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 11/145 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ +D V DP N+GA+LR+ A G++ KR S V AK++SGAL IP IR+ N Sbjct: 47 LVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGN 106 Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETAT 249 L+ +L + G+ +G S+ + P + +++G E KG+ RP Q++ Sbjct: 107 LSQSLMYLRKRGYGVASLALGGSTAYRDPFPA-----PLVVVVGEEEKGVSRPVLQQSDW 161 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ L M G + +LN+S A + LY Sbjct: 162 KVS-LPMRGKVSSLNLSVALGIFLY 185 >gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 253 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 19/244 (7%) Query: 42 HTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 T P++ FL YG V AL + ++ +++ A R A + VP Q Sbjct: 5 STISPKDRFLTVYGRKPVLEALADDGLRVDKVILADTA--RGPGAAEIQRAAKAAGVPVQ 62 Query: 100 T-----IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 + + G QG+ A +L+P + A+ R +++LD + P N+ Sbjct: 63 RASAHRVKVLAGNGKQDQGV---LADVLAPRMRALSAALADRRPPSRVLLLDGITTPANV 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A A DG+I +R + ++ K+++G P +R + +A + + GF Sbjct: 120 GMILRTATAAGLDGVIVPRRGVAALDPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGF 179 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L + ++ + + A +LG E G+ + E T + MPG +++LNVS Sbjct: 180 GLYALGASARTTVFDVDLPQRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSA 239 Query: 268 AAAV 271 AAAV Sbjct: 240 AAAV 243 >gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] Length = 284 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 21/205 (10%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147 + PV + KI G +H+G PT+ D R++ + VL+++ D N+ Sbjct: 83 YDIPVFVAGFDLLHKITGYR-LHRGALSAMRRWKLPTVEDICRDAHRVAVLENIVDYTNV 141 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-- 205 GAI+RSA A + D ++ T + A+ + G + +P+ RI H+W Sbjct: 142 GAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGG-----DNPHAWPQ 196 Query: 206 ---------GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 GF T+ ++ +D L+Q + K D++ALI G EG GL +T A Sbjct: 197 PSIHQLTDLGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTLAAADLTVK 256 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ ++AVA Y T Sbjct: 257 IPMSHQVDSLNVAASSAVAFYATMT 281 >gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c] gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName: Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae] gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae] gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c] Length = 412 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 94/341 (27%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58 + K +H KL+ + K NQKS H S+ +N ++YG ++V Sbjct: 79 YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110 AAL NPSR N +RL + +P F V + +DK ++ V Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKFLQIVDELKVTTELVDKHRLNLLTNYGV 184 Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136 H +ALET PL LS T + L + Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE +P + Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304 Query: 197 DAL---QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLRP 242 + Q+M W F T L++ + + L + L++G E +G+R Sbjct: 305 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364 Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 284 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 9/210 (4%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVP-----PQTIDKIVGKEAVHQGLALETAPLLSPT 125 L LA LD D P V VP + + +VG LA+ P + Sbjct: 68 FLGVDKRLAELDADLRTPS---VSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTV 124 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + N++ + +L+ VND NIG+I R+A D ++ + + + G Sbjct: 125 DEILANARSVAILEGVNDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHAL 184 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P+ R L + + GF+ I L+ D + PL Q ++ K+ ++GAEG GL Sbjct: 185 LVPFARFDEWPRGLDALRAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHA 244 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+A Y Sbjct: 245 MAATDVRARIPMSRGTDSLNVATAAAIAFY 274 >gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 249 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD++ DPHN+GAI+R+A G+I K + S +A +AK+++GA+ + P +++ Sbjct: 102 FIIILDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVT 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ + G + +K I L++G EG G+ +E +A Sbjct: 162 NIANTIEDLKDKGLWFACADMGGTTMYQLNLKG-PIGLVIGNEGSGVSRLVREKCDMIAS 220 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S A V + Sbjct: 221 IPMKGDIDSLNASVACGVLAF 241 >gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] Length = 244 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIG 148 VP + ++++ + HQG + +P+ + + ++ L ++LD ++D N G Sbjct: 54 VPVEKLNRLT--KGNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFG 111 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A GI+ K+ + K+++GA+ +P ++ ++ DA+ + + G + Sbjct: 112 AIIRTAECTGVHGIVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVK 171 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 I + + + A+++G+EG+G+ P + A + A L + G I++LNVS A Sbjct: 172 VIAATEKTNDTVFDVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVA 231 Query: 269 AAVALY 274 LY Sbjct: 232 CGAFLY 237 >gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] Length = 275 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 LM+LD++ DP N+G I R+A A GII ++ + +S GAL +P++ + + Sbjct: 128 LMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFVYVED 187 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + + ++ D K ++E A ++G EG GLR + + A + + Sbjct: 188 LRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQCADTWIRI 247 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + AA V ++ Sbjct: 248 PMCGQVESLNAAVAATVLMF 267 >gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] Length = 159 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LDA LLMVLD++ DP N+G ILR+ A G+I + + + +S G++ Sbjct: 4 LDAQGRKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSVY 63 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P++ + +L + L+ + G + K +QE A ++G EG GLR + Sbjct: 64 RMPFVYVEHLPETLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGLRDEVA 123 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G +++LN + A++V ++ Sbjct: 124 DVAECYIKIPMCGEVESLNAAVASSVLMF 152 >gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] Length = 264 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +LD + DPHN+GAI+R+A G+I KR + +A + K+++GA+ + P +++ Sbjct: 116 FFFILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVT 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ ++++ G D + + + + L++G EG G+ +E + Sbjct: 176 NISKTIEELKERGMWFACADMDGELMYKCNLTG-SLGLVIGNEGNGVSRLVKEKCDYVVS 234 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I +LN S AA V Y Sbjct: 235 VPMKGDIDSLNASVAAGVLAY 255 >gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 316 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P +D++ G HQGL L+ P L+ + L++ LD V DP N+GA Sbjct: 125 PRPELDRMTGG-LNHQGLVLQVPPYEYAHPEDLAASAADHGEDPLIVALDGVTDPRNLGA 183 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RS AF G++ +R + +A K+++G P R +NLT AL+ G Sbjct: 184 VVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTV 243 Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL++D + + + E + +++G+EGKGL ET + + MPG ++LN A Sbjct: 244 VGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVA 303 Query: 269 AAVALY 274 A V LY Sbjct: 304 AGVVLY 309 >gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37] Length = 201 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 111 HQGLA--LETAPLLSPT---LDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQ L L+T LL P + V N + L++LD + DP+N GAILR+ +A DGII Sbjct: 25 HQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGII 84 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE- 221 K + + K++ G++ + ++++NL+ + K+ GF T+ + D KP++ Sbjct: 85 FKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDY 144 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ K LI+G E +G+ + A + M I +LNVS A + L+ +N Sbjct: 145 RKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAWKN 201 >gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R] Length = 246 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + I++I Sbjct: 7 MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINRITR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + ++LD + D N GAI R+ Sbjct: 66 KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCECAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIY 238 >gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] Length = 249 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 15/196 (7%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVL 138 + P VP + ++++ GK HQG+ +P+ D++ N + L++L Sbjct: 47 YEIPTSYVPVEKLNRLTGKN--HQGVYAFLSPI---EFDSIENVLPQIYERGKTPFLLIL 101 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V+D N GAI R+A D II + S S +A K+++GAL +IP + +NL Sbjct: 102 DRVSDVRNFGAIARTAECVGIDAIIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKT 161 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + G S S L +A+I+G+E G+ + + + L M G Sbjct: 162 VDYLQQSGIVLAAASEKSDTYLYDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAG 221 Query: 259 IIKALNVSNAAAVALY 274 +LNVS A LY Sbjct: 222 QTASLNVSVACGAILY 237 >gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] Length = 224 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 1/147 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+ ++ LD+V D NIGA +R+A F G++ KR S K+++GA+ HI Sbjct: 72 ALTGGSFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHI 131 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R+ N A++K+ GF T+ D + LE A+++G E +G+ ++ Sbjct: 132 PIARVENFASAIKKLKKLGFTTLAADLDGED-LEAVSLLLPAAVVIGGEDRGVSRPVKKQ 190 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G + +LN+S AA + LY Sbjct: 191 CDFVVKIPGVGKVNSLNLSVAAGIFLY 217 >gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] Length = 251 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A +D + Q + +LD + DPHN+GAI+R+A G+I Sbjct: 72 HQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAIVRTANLCGAHGVI 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A + K+++GA+ + P ++++NL + ++ G D + Sbjct: 132 IPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFACADMDGELMYRCN 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G EG G+ +E + + M G I +LN S AA V Y Sbjct: 192 LTG-PMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVLGY 241 >gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] Length = 339 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRS 153 +D++ + A+HQGL L+ P + L A LL+ LD V DP N+GA +RS Sbjct: 151 LDRLC-QGALHQGLGLQVPPFHYEEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRS 209 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ +R + +A ++++GA +P + +NLT A+Q+ G GL Sbjct: 210 AAAFGAHGVVVPQRRAAGMTATAWRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLD 269 Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +D + L + D + L++G+EG+GL E+ + + +++LN Sbjct: 270 ADGEIDLFDLPAAVDPLMLVVGSEGRGLSRLVGESCDLRVRIPIASAVESLN 321 >gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter thermophilus TK-6] Length = 240 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 11/153 (7%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185 DA++ + ++VLDH+ DP N+G +LR+ G ++ T R SP + V+ K+++G++ Sbjct: 83 DALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALLPTHRSSPI-NQVVVKASAGSVF 141 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLR 241 H+ ++ +L+ AL+ G I + K +I+ I AL+LG+EG+G+ Sbjct: 142 HLKISKVPSLSKALKDFKKQGGWVISVERGGK-----DIRYTSIPLPCALVLGSEGEGVS 196 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + + M G I +LNVS+A A+A++ Sbjct: 197 KSLLEISDLVLSIPMVGKINSLNVSSAGAIAMW 229 >gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 268 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +R+++ + VL+ VND NIG++ R+A D I+ + + + G Sbjct: 113 DVLRDARTVAVLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALR 172 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ +I L + GFQ I L+ + P L + + +++AL+LGAEG GL Sbjct: 173 VPFAQIPEWPRGLNILRDRGFQLISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAM 232 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+A Y Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFY 261 >gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 13/204 (6%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQ 133 N D+ + H V V P+ + ++ + QG+ E A + P L A R Sbjct: 48 NIFVLEDFADRVEHMSNVTFVTPEVLKELTDSKT-PQGIIAEVAMPILPLANLKAGR--- 103 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL+ V DP N+G ++R+A A DG++ + + + + +S G+ H+P R + Sbjct: 104 -YLVLEDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSMQGSHFHLPVWR-T 161 Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250 N+ +A + + + G I LS DS + +K+D AL++G EG G+ K A Sbjct: 162 NVYEACETLQNLGVPIIATTLSKDSVD--YKTVKHDGNFALVMGNEGNGISNKMTNQADV 219 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 +AH+ MPG ++LNV+ A + L+ Sbjct: 220 LAHIIMPGQAESLNVAVATGIVLF 243 >gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 17/196 (8%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV T +T+ K+ G A+ +G+ P+++ + +NS+ + +L+++ +P NIGA Sbjct: 79 IPVYTAEYETLVKMTGY-ALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSW 205 I RSA A D ++ T S A+ + G + IP+ T D ++ + + Sbjct: 138 IFRSAAALHMDAVLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNL 197 Query: 206 GFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 GF+T+ + S D + L QE K+A++LG EG GL +T + M Sbjct: 198 GFKTVAMALRDDSYSIDDPELLAQE----KLAIVLGTEGDGLASETIADCDYTVKIPMAH 253 Query: 259 IIKALNVSNAAAVALY 274 + +LNV+ A+AVA + Sbjct: 254 GVDSLNVAAASAVAFW 269 >gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 272 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL P D + ++ ++V++ VND N Sbjct: 76 PAPVYAVAPELAERVTGYH-VHRGALASMQRKPL--PAADELLATARRVVVMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAG 192 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ + L+ D+K E + +++AL+LGAEG GL + A + M + +L Sbjct: 193 FRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] Length = 106 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 60/95 (63%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGA + +PYI ++NL AL+++ G IG S ++ L + + +AL++GAEG+G Sbjct: 2 ASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLYETKLDGPVALVMGAEGEG 61 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +R T++T + + M G +++LNVS A+ V LY Sbjct: 62 MRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 96 >gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8] gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8] Length = 227 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG H ++ LN+ K+ ++ +K + + F +K P I + Sbjct: 5 VYGKHVITHLLNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] Length = 292 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 32/221 (14%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140 W A++P V P+ + ++ G +H+G A+ PL S + ++++ + V+++ Sbjct: 78 WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKDARRVAVMEN 131 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-DAL 199 + D N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGT 191 Query: 200 QKMHSW-----------GFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236 + H W GF T+ ++ + + P E +K+ALI G E Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIEKLALIFGTE 251 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL T A + M + +LNV+ ++AVA Y T+ Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 261 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 TLD N ++ D V DP N+G I+R+A A DGII TK + +S G+L Sbjct: 105 TLDL--NGSFYLLCDKVQDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSL 162 Query: 185 EHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++P + N+T ++ + F+ + S D+ K QE K+ L +G EG G+ + Sbjct: 163 FYVPVHYDDENMT-LVKSLKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDE 221 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + + MPG ++LNV+ A +V +Y Sbjct: 222 VYELADTKVKIPMPGNAESLNVAIATSVIMY 252 >gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] Length = 271 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 8/154 (5%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +N++ + VL++V +P N+GAI RSA A + D ++ T S ++ + G + IP Sbjct: 114 CQNAKKVAVLENVMNPTNVGAIFRSAAALNMDAVLLTGGCSNPLYRRASRVSMGTVFQIP 173 Query: 189 YIRISN-----LTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGL 240 + I + + ++++H GFQT + LS DS ++ ++ + K+A+ILG EG GL Sbjct: 174 WTFIGEKQEDWIENGIRRLHGLGFQTAALALSDDSVSIDDKRLREEKKLAIILGTEGDGL 233 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + M + +LNV+ A+AVA + Sbjct: 234 AEQTIAECDYTVKIPMTHGVDSLNVAAASAVAFW 267 >gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 235 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 16/235 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGK 107 ++YG V A+ N ++ ++ KNA + + V TV + ++++ G Sbjct: 3 YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAGT 60 Query: 108 EAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQ + +E L+ D + + +LD + DPHN GAI RS F Sbjct: 61 KN-HQAVVALVSDFEYIELEDLIRKLED--KEDARIFILDKIEDPHNFGAIARSCNFFGI 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II R + + + + KS++GA+ I ++SN++ ++ K+ GF + + Sbjct: 118 DAIIFPNRRAATVNDTVVKSSAGAIYDIDVCKVSNISQSIDKLKEAGFWIYATDLEGEDI 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + K A+++G EGKG+ + + + +LN S AAA+ +Y Sbjct: 178 RECDFSG-KAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMY 231 >gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp. Group II '5-way CG'] Length = 192 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 11/145 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ +D V DP N+GA+LR+ A G++ KR S V AK++SGAL IP IR+ N Sbjct: 47 LVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGN 106 Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETAT 249 L+ +L + G+ +G S+ + P + +++G E KG+ RP Q++ Sbjct: 107 LSQSLIYLRKQGYGVASLALGGSTAYRDPFPA-----PLVIVVGEEEKGVSRPVLQQSDW 161 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ L M G + +LN+S A + LY Sbjct: 162 KVS-LPMRGKVSSLNLSVALGIFLY 185 >gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum] Length = 487 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 15/162 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----------LDAVRNSQLLMVLDH 140 PV V Q +D K VH G+ ++ +PL + + +D +++ L++ LD Sbjct: 285 PVYPVKKQLLD-TFSKWNVHNGMVMDCSPLTAESIDKLQVITKEAMDKLKSPPLVVALDE 343 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N GAI+R+ F G++TT ++S + V +K+++GALE P + ++ L+ Sbjct: 344 IWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAGALEDTPIYKTMSMYGFLK 403 Query: 201 --KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 K + W L DS KPL L++G EG G+ Sbjct: 404 GSKENGWKIMGTSLGEDS-KPLNSVKLTQPTILVIGNEGFGV 444 >gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 363 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P +D++ G HQGL L+ P L+ + L++ LD V DP N+GA Sbjct: 172 PRPELDRMTGG-LNHQGLVLQVPPYEYAHPEDLAASAADHGEDPLIVALDGVTDPRNLGA 230 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RS AF G++ +R + +A K+++G P R +NLT AL+ G Sbjct: 231 VVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTV 290 Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL++D + + + E + +++G+EGKGL ET + + MPG ++LN A Sbjct: 291 VGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVA 350 Query: 269 AAVALY 274 A V LY Sbjct: 351 AGVVLY 356 >gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 268 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +R+++ + VL+ VND NIG++ R+A D I+ + + + G Sbjct: 113 DVLRDARTVAVLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALR 172 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ +I L + GFQ I L+ + P L + + +++AL+LGAEG GL Sbjct: 173 VPFAQIPEWPRGLNILRDRGFQLISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAM 232 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+A Y Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFY 261 >gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 276 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL + E + A + M +LNV+ A+ +AL Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASDIAL 269 >gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 275 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%) Query: 71 LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N LA L + LP PV +VP +D + G VH+G LA+ +T P L Sbjct: 63 LLVLENRLAGLGEQLSQLPSEVPVYSVPQTVMDAVAGFH-VHRGILAVGRRKTPPSLQAM 121 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD + L++VL +++ N+G+I R+A AF D ++ + + GA Sbjct: 122 LDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYRKAIRVSVGATL 181 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY ++ + + + F + LS S + K+ + AL+LG EG+GL P+ Sbjct: 182 KVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHGRQALLLGTEGEGLPPRLL 241 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 242 EKLQT-ARIPMSTAFDSLNVATASGIAL 268 >gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ R+ Sbjct: 95 FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAIEYMKIARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + S KP+ + +++G+EGKG+ +E A + Sbjct: 155 NLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G I + N S AA + + Sbjct: 215 IPQKGYINSFNASVAAGIIFF 235 >gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 275 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 21/261 (8%) Query: 29 DYKKMQSFNQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY +++ + + R + + E LF+ V ++ +L T L RL A++ Sbjct: 15 DYVRLR--DSELRKSLEAERGLFIAEGEKVIRRAVATGHRLRSVLTTAKWLDRL---ADV 69 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALE------TAPLLSPTLDAVRNSQLLMVLD 139 P V + + I G + VH+G A+E A LL+ +++L+ Sbjct: 70 IGDVPTYLVSDEVMRGIAGFQ-VHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILE 128 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GAI R A A D II + R + K + GA+ IPY R+ + L Sbjct: 129 DLVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGL 188 Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPK-----TQETATSMAH 253 ++ + GF+ + L+ D S PL + +++AL+LG+EG GL + + M+ Sbjct: 189 GEVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSP 248 Query: 254 LHMPGIIKALNVSNAAAVALY 274 M + +LNV AAA+A + Sbjct: 249 AAMARGVDSLNVVAAAAIACH 269 >gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120] gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120] Length = 252 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W L Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + I ++ + QG+ P + + +LL+V D V DP N+ Sbjct: 65 KGDYDVFEISAE-ISHLISETMTEQGV-FAVVATSEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ + + + + +S G+ HIP I+ ++L D + + G Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K + +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Equus caballus] Length = 355 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 22/187 (11%) Query: 110 VHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ +E +PL R + QL ++L+ + DP N+GA+LRSA D + Sbjct: 117 VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILEGLQDPRNLGAVLRSAYFLGVDKV 176 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTIGL-----SS 214 IT++R S + V++K+++GA+E + +L LQ G+ T+G S Sbjct: 177 ITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFLQVKARQGWLVAGTVGCPGPETSL 236 Query: 215 DSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSN 267 S+ P+ ++ + L+LG EG GL + Q + T + +P +++LNVS Sbjct: 237 SSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASCQVLLTILPGRQLPPGLESLNVSV 296 Query: 268 AAAVALY 274 A + L+ Sbjct: 297 ATGILLH 303 >gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4] gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4] Length = 227 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG ++ LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVITHLLNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ L+ +L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ + N+ D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii DSM 12563] gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii DSM 12563] Length = 237 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 6/187 (3%) Query: 93 VKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 +K V ++KIVGK + + + L L+ +++ L+ +LD + D HN+ Sbjct: 45 IKNVDKNEMEKIVGKVYSIAADIKENAEIGIENFLQKALEK-KDNPLIFILDSITDVHNL 103 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A F GII K S + + + ++GA H+P +NL ++ M GF Sbjct: 104 GAIIRNAYFFGSSGIIIPKDNSAPINEKVYEISAGAAYHLPISIETNLNRTIELMKDKGF 163 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S + + LE N A+ILG E G+R ++ + ++ +LNVS Sbjct: 164 WIYYASEEGETSLEDFKFNTPTAIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSA 223 Query: 268 AAAVALY 274 A+AV Y Sbjct: 224 ASAVIAY 230 >gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus] gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus] gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus] Length = 360 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 22/193 (11%) Query: 104 IVGKEAVHQGLALETAPLLS-PTLDA--VRNS----QLLMVLDHVNDPHNIGAILRSAVA 156 ++ + VHQG+ +E +PL P +A R QL +VL+ + DP N+GA+LRSA Sbjct: 116 VLCRHQVHQGVCMEVSPLRPRPWAEAEVARPGDDPQQLWLVLEGLQDPRNLGAVLRSAHF 175 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----- 211 D +IT++R S + V++K+++GA+E + +L LQ G+ G Sbjct: 176 LGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQARARQGWLVAGTVGCP 235 Query: 212 ---LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIK 261 ++ SK P+ + + + L+LG EG GL Q + T + +P ++ Sbjct: 236 GPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLE 295 Query: 262 ALNVSNAAAVALY 274 +LNVS AA + L+ Sbjct: 296 SLNVSVAAGILLH 308 >gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 290 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 18/212 (8%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVN 142 D + PV P+ + +I G +H+G PT+ + N+ + VL+++ Sbjct: 75 DEHWGDDIPVYVASPEQLRRITGYR-LHRGALAAMHRWELPTVAEVCANATRIAVLENIV 133 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------ 196 D N+GAI+RSA A D ++ T S + + G + +P+ RI Sbjct: 134 DHTNVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPW 193 Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKN---------DKIALILGAEGKGLRPKTQE 246 L+++H GF T ++ SD L+ + DK+ALI G EG GL T Sbjct: 194 QGLEELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIA 253 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M + +LNV+ ++AVA Y T++ Sbjct: 254 NADLTVKIPMSHDVDSLNVAASSAVAFYSTRD 285 >gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 272 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 7/180 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P+ +++ G VH+G +++ PL + + + + ++ +++++ VND NI Sbjct: 76 PAPVYAVAPELAERVTGYH-VHRGALASMQRKPLPA-SEELLATARRVVIMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ AL+ + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKALEGVREAGF 193 Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + L+ D+K E + +++AL+LGAEG GL + A + + M + +LN Sbjct: 194 RLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWVRIPMAHGVDSLN 253 >gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] Length = 264 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD + DP N+G I+R+A GI+ ++ + + +S GA +P+ + Sbjct: 117 LLLVLDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVD 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + +++M G T + K ++E A ++G EG GLR + + A Sbjct: 177 DLAEEVKQMKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIR 236 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A A+ + Sbjct: 237 IPMKGQVESLNAAVATAILTF 257 >gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129] gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252 homolog gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae M129] Length = 242 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+T L D+ S L+M L + DPHN GAILR+ +A DGII K ++ Sbjct: 79 LKTIEQLIQITDSKSTSTLVM-LHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINST 137 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLE-QEIKNDKIALIL 233 + +++ G + + ++++NL+ A+ + GF T+ + D + KP + +++ DK L++ Sbjct: 138 VIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLKPKDYRQVDFDKRILLV 197 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G E KGL + A + M + +LNVS A + L+ Sbjct: 198 GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 238 >gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 292 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 22/206 (10%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV P+ + ++ G +H+G A+ PL S + R+++ + V++++ D N+G Sbjct: 82 IPVYVASPEQLRQLTGYR-LHRGALSAMRRWPLPS-VEETCRDARRVAVMENIVDHTNVG 139 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKM 202 A++RSA A D ++ T A+ + G + IP+ RI L+++ Sbjct: 140 ALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRGLEEL 199 Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATS 250 S GF T+ ++ SD L++ + DK+ALI G EG GL T A Sbjct: 200 RSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIDKLALIFGTEGDGLSRHTIAGADL 259 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 260 TVKIPMSHGVDSLNVAASSAVAFYAT 285 >gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] Length = 271 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 3/175 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQGLA + + +QL L++LD + D N+GAI+R A A GI+ ++ Sbjct: 96 HQGLAARMPEFPYADFEGLFQAQLPALLVILDGIQDSFNLGAIIRCAEALGAGGIVLPEK 155 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 ++ A+S++GA+ +P R+ L A+ ++ S G + + + S++ L + Sbjct: 156 GQSGVNSQAARSSAGAVNFLPIYRVPALDRAIDQLKSRGMKILAATEKSEQSLWNVVIPA 215 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + LI+G EGKG+ + M G +LN + AA + L Q K Sbjct: 216 PLCLIIGNEGKGVSSALLSACDIQVRIPMAGQTSSLNAAVAAGILLAEIQRQSLK 270 >gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8] gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 242 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 4/167 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG+ + +++ + ++ L+++LD + DPHN+GAI+R++V +GII K Sbjct: 65 HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKD 124 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K ++G + ++NL ++++ G T D P+ +E Sbjct: 125 KSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYEEDFTF 183 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230 >gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 248 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 117/236 (49%), Gaps = 7/236 (2%) Query: 46 PENLFL--YGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQT 100 P++ F+ YG V AL++P ++ ++L + A A+ DA V+ Q Sbjct: 5 PKDRFVTVYGRKPVLEALDDPRLEVDKVLMAEGARGPAAKEILDAASRRGVRVQRATAQR 64 Query: 101 IDKIVGKEAVHQG-LALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFS 158 + + G QG LA AP ++P A+ + + +++LD + P N+G ILR+A A Sbjct: 65 VKVLAGNGRHDQGVLADVVAPRMAPLALALESRPRGVLLLDGITTPANVGMILRTATAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +GI+ +R S ++ K+++G P +R +A ++ + G+ L + +K+ Sbjct: 125 VEGIVVPRRGVASIDPLVVKASAGVAFRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKR 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ A +LG+E G+ +E T + M +++LNV++AAAV + Sbjct: 185 SVYAAELPERAAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCF 240 >gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] Length = 255 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 25/254 (9%) Query: 38 QKSRHTSQPE--NLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL-----DWDANL 87 + SR ++P+ N F++G+ +V A+ + Q T + L D DA Sbjct: 2 ENSRRPARPKENNEFIFGIRSVIEAIKAGKDIESIYIQRGLTGGIILELKALLKDVDA-- 59 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDH 140 PV VP + ++++ K HQG+ + + + P + + L+++LD Sbjct: 60 ----PVHNVPVEKLNRMTQKN--HQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDG 113 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GAI R+A I+ + S +A K+++GAL IP R NL Sbjct: 114 ITDVRNMGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTAL 173 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G Q + + + + A+++GAE +G+ + A +A + M G I Sbjct: 174 FLQECGLQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEI 233 Query: 261 KALNVSNAAAVALY 274 +LNVS +A V LY Sbjct: 234 SSLNVSVSAGVILY 247 >gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ Sbjct: 91 KEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKI 150 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+ NL ++++ G + S KP+ + +++G+EGKG+ +E A Sbjct: 151 ARVVNLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVIGSEGKGISRLVKEGAD 210 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G + + N S AA + + Sbjct: 211 FLIKIPQKGYVNSFNASVAAGIIFF 235 >gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 289 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNI 147 P+ + Q I ++ G + LA P + L A+ N+ + +L+H+ +P NI Sbjct: 88 PIYVINDQQIRQLAGYNLLRGALAAMYRVQRPSFADFLKALPNAHPRIAILEHIVNPANI 147 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQKMHS 204 GAI RSA A DG+I T + ++ + G + +P+ I T+ + +H Sbjct: 148 GAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQVPWTYIDAKIWQTEGISLLHR 207 Query: 205 WGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G+QT ++ + + Q +K DK+A+ILG+EG GL +T + + M + Sbjct: 208 LGYQTAAMALRHNTIRIDDPQLVKIDKLAVILGSEGPGLEERTIMQSDFSIKIPMATGVD 267 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+A+A + Sbjct: 268 SLNVAAASALAFW 280 >gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] Length = 226 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 4/225 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +Y V + N KI L K+ + + ++ + F VK +P K+ K Sbjct: 1 MLIYAKQPVQYIIKNYPNKIRTLYLAKD-VDKKEYSELMKMNFEVKRIPADAAGKMC-KN 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A HQG+ E ++ + ++VL + D NIGAI+R+A A + I+ Sbjct: 59 ANHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + V+ ++++GAL +P+ N+ D + + + GF G + +IK K Sbjct: 119 KLNFEPVM-RTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQ-K 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL+LG EG+GL + + + M +LNVS A A+ + Sbjct: 177 RALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221 >gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 288 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 5/198 (2%) Query: 82 DWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 + DA+L P P + + +++G LA P+ +D + +++ + V Sbjct: 86 ELDADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPVERTVVDVIEHARTVAV 145 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ VND NIG+I R+A D ++ + + + G +P+ + + Sbjct: 146 LEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKSQDWPG 205 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L + GF T+ L+ + PL + K+A ++GAEG GL T A + M Sbjct: 206 DLDVLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGLAEHTMRRCDVRARIPM 265 Query: 257 PGIIKALNVSNAAAVALY 274 +LNV+ AAAVA Y Sbjct: 266 SRGTDSLNVATAAAVAFY 283 >gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A L L A R L++LD++ DPHN+GAI+R+A G++ Sbjct: 69 HQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTANQAGAHGVV 128 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A +AK+++GA+ + P +++N++ ++++ G + + Sbjct: 129 IPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCADMGGTTMYDLN 188 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG G+ ++ +A + M G I +LN S A V Y Sbjct: 189 LTG-SIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238 >gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 19/241 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ ++I ++L + L+R ++ PV+ VP + +D+ Sbjct: 3 ENEMVFGIRAVIEAIQ-ADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQG-------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG + E + P + + +++LD V D N GAI R+ Sbjct: 62 LTRKN--HQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ R S + +A K+++GAL + + ++T+A++ + + G + + + S Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVK---VYAAS 176 Query: 217 KKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K E IK D +A+++GAE G+ SM + G I +LNVS A+++ + Sbjct: 177 EKAFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILI 236 Query: 274 Y 274 Y Sbjct: 237 Y 237 >gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] Length = 251 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +VLDH+ DP N+G+I R+ F G++ K S +AV+ KS+SGA+ H+ Sbjct: 93 IEEKGFFVVLDHITDPQNVGSIARTVEVFGGIGLLIPKDRSAPINAVVVKSSSGAIFHLK 152 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +++ A++ G L K + + + ++LG+EG+G+ E + Sbjct: 153 ISKTPSISKAIKTFKEMGGWVYALEKGGKDITKVDFAYP-MCIVLGSEGEGVSKNVLEHS 211 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G + +LNVS A A+ L+ Sbjct: 212 DVRVSIPMKGKVTSLNVSAAGAICLW 237 >gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] Length = 304 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 11/192 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV P+ + + G VH+G LA LS + +R S+ ++VL+ VN+ N+GA+ Sbjct: 108 PVYVGAPEVLQSVTGFH-VHRGALAAFARRPLSSVEEILRTSRRIVVLEDVNNHTNLGAV 166 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R A A DG++ + R + + + GA+ IPY R D L + + F+ + Sbjct: 167 FRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDTWPDELTGVSAAQFRLL 226 Query: 211 GLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ D P +I+ ++IAL+LGAEG GL + + A + M + +LN Sbjct: 227 ALTPD---PAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRVRIPMHAGVDSLN 283 Query: 265 VSNAAAVALYIT 276 V+ AAA+A ++ Sbjct: 284 VAAAAAIACFVV 295 >gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 394 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 21/211 (9%) Query: 92 PVKTVPPQT-----IDKIVGKEAV-------HQGLALETAPLLSPTL-DAVRNSQ----- 133 P++T+ + I K V KE + HQG+ A T+ D + ++ Sbjct: 185 PIRTIVREAKKTDAILKFVDKERLNQLTNEHHQGVVAIVAAYEYGTIEDLFKRAEEKGED 244 Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+GAI+R+A G+I K + + +AK+++GA+ + P +++ Sbjct: 245 PFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKV 304 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +N+ + ++ G D + Q + I L++G EG G+ +E ++ Sbjct: 305 TNIGKTMDELKERGMWFACADMDGEVIYRQNLTG-SIGLVIGNEGSGVSRLVKEKCDFIS 363 Query: 253 HLHMPGIIKALNVSNAAAV-ALYITQNHFAK 282 + M G I +LN S AA V A + + K Sbjct: 364 SIPMKGDIDSLNASVAAGVLAFEVVRQRLGK 394 >gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SSC/2] Length = 246 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DPHN+GAI+R+A G+I K + + +AK+++GA+ + P ++++ Sbjct: 98 FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVT 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + ++ G D + Q + I L++G EG G+ +E ++ Sbjct: 158 NIGKTMDELKERGMWFACADMDGEVIYRQNLTG-SIGLVIGNEGSGVSRLVKEKCDFISS 216 Query: 254 LHMPGIIKALNVSNAAAV-ALYITQNHFAK 282 + M G I +LN S AA V A + + K Sbjct: 217 IPMKGDIDSLNASVAAGVLAFEVVRQRLGK 246 >gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] Length = 248 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ +++ ++L ++ L ++ PV+ VP + +D+ Sbjct: 3 ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ A++ + G + S + Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237 >gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus scrofa] Length = 361 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 22/193 (11%) Query: 104 IVGKEAVHQGLALETAPLL-SPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156 ++ + VHQG+ +E +PL P +A + QL +VL+ + DP N+GA+LRSA Sbjct: 116 VLCRYQVHQGVCMEVSPLRPQPWAEAGESRPGDDPQQLWLVLEGLQDPRNLGAVLRSAHF 175 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----- 211 + +IT+++ S + V++K+++GA+E + +L LQ G+ G Sbjct: 176 LGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKARQGWLVAGTVGCP 235 Query: 212 ---LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIK 261 +S S+ P+ + + L+LG EG GL + Q + T + +P ++ Sbjct: 236 GPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSREVQASCQLLLTILPGRQLPPGLE 295 Query: 262 ALNVSNAAAVALY 274 +LNVS AA + L+ Sbjct: 296 SLNVSVAAGILLH 308 >gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201] Length = 275 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV + +++I G +H+G +A P P + +++ + +L+ + D N+GAI Sbjct: 85 PVYVGADEVLEQITGFH-LHRGAMAAMHRPEPLPLESVLASARRVAILEDIVDHTNVGAI 143 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T R + + + G + +P++R+ + T LQ++ GF T Sbjct: 144 FRSAAALDVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWVRLEHWTADLQRVKDAGFLTA 203 Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ SD ++ +K+ALILG EG+GL T A + M + +LNV+ Sbjct: 204 ALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAATLHHADRHVIIPMSHGVDSLNVAA 263 Query: 268 AAAVALYITQ 277 A+AVA + T+ Sbjct: 264 ASAVAFWETR 273 >gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 296 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 7/193 (3%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H PV + + KI G + L P LS +N++ + +L++V +P N+G Sbjct: 96 HVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNVG 155 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----ALQKMHS 204 AI RSA A D ++ T+ + ++ + G + IP+ A+ +H Sbjct: 156 AIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAMDVLHK 215 Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G++T ++ D ++ E + +K+A++LG EG GL T + M + Sbjct: 216 LGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGVD 275 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+AVA + Sbjct: 276 SLNVAAASAVAFW 288 >gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] Length = 251 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD V DP N+G I+R+A AF+ D II K + + +S G+ HI + Sbjct: 106 VLILDRVQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVD 165 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMA 252 L D L+ M + L +D K +EQ + N +A+I G EG G+ + + ++ Sbjct: 166 LVDLLEHMKDFSIFATSLKAD--KYIEQ-LDNIVGNVAVIFGNEGSGVSEEILDKVNNLL 222 Query: 253 HLHMPGIIKALNVSNAAAVAL-YITQN 278 + MPG ++LNVS AA + + YI+ N Sbjct: 223 KISMPGKAESLNVSIAAGIVMHYISTN 249 >gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18] Length = 565 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + DP N+GAI+RSA F D +I + R S SAV K+++GA E+IP + +N Sbjct: 361 LFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNP 420 Query: 196 TDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T ++ H+ W F QT+G ++ S++ + ++ L+LG+E Sbjct: 421 TLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGSEE 480 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL ++ A + +PG I A NV + A V Sbjct: 481 QGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 512 >gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 264 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVL 176 L L A RN +L +MVL+ + DP N+G I+R+A GI+ TT Y+P + Sbjct: 100 LEDILKAPRNGKLAIMVLETIQDPGNLGTIVRAAEGAGITGIVMNRETTDIYNPK----V 155 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S G++ +P++ + ++ A Q M G + +QE D + ++G E Sbjct: 156 IRSTMGSICRMPFVCVDDIRQACQTMKDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNE 215 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL T A + M G +++LN + AA+V ++ Sbjct: 216 AGGLTDGTAAMADCYVKIPMAGRVESLNAAVAASVLMF 253 >gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 268 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 9/193 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV V + +++ G VH+G AL + AP TL A + + D + D N+ Sbjct: 77 PVYLVSAELAEQVTGFH-VHRG-ALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDHTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA R+A A D ++ + + K + G + +P+ R+++ AL ++ GF Sbjct: 135 GAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLREHGF 194 Query: 208 QT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 T L+ DS E + D K+ALI G EG GL P + M G + +LN Sbjct: 195 VTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVDSLN 254 Query: 265 VSNAAAVALYITQ 277 V+++AAVA Y T+ Sbjct: 255 VASSAAVAFYATR 267 >gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] Length = 268 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 8/253 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + RD ++ ++ ++ E + V + A ++ R + LL+ A D A Sbjct: 15 DFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRAL--LLSEAQAQRLGDVIA 72 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETA-PLLSPT--LDAVRNSQLLMVLDHV 141 LP PV + +D++VG +H+G LAL A PL P L+ + L++ + Sbjct: 73 ALPQDVPVYVAGQKVMDQVVGFP-IHRGILALGVARPLPEPAALLERLGERALVVAALGL 131 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 + N+G I R+A AF D ++ + + GA +P+ R+++ A++ Sbjct: 132 TNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGAAAVEL 191 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + GF+ + LS ++PL + ++ ++A + G EG GL P T + M Sbjct: 192 LKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGL-PDAVMAMTRTVAIPMAAGFD 250 Query: 262 ALNVSNAAAVALY 274 +LNV+ + + L+ Sbjct: 251 SLNVATTSGIVLH 263 >gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] Length = 249 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++GV V A+ ++I ++L K+ + L + A PV+ VP + ++++ Sbjct: 7 IIFGVRAVIEAVE-AGKEIDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNRVTR 65 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + L P L + ++LD V D N GAI R+ Sbjct: 66 KN--HQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCECGGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ + S S +A K+++GAL +P R +L ++ + GF+ + + Sbjct: 124 DAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKGDYN 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q I LI+G+E KG+ + + + G I++LNVS AA V +Y Sbjct: 184 YTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIY 238 >gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] Length = 253 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ Sbjct: 92 EAAFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIA 151 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R+ NL ++++ G + S KP+ + +++G+EGKG+ +E A Sbjct: 152 RVVNLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPACIVIGSEGKGISRLVKEGADF 211 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G I + N S AA + + Sbjct: 212 LIKIPQKGYINSFNASVAAGIIFF 235 >gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03] Length = 565 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + LD + DP N+GAI+RSA F D +I + R S SAV K+++GA E+IP + + Sbjct: 359 FALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTT 418 Query: 194 NLTDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGA 235 N T ++ H+ W F QT+G ++ S++ + ++ L+LG+ Sbjct: 419 NPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGS 478 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 E +GL ++ A + +PG I A NV + A V Sbjct: 479 EEQGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 512 >gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905] gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905] Length = 254 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 24/253 (9%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y K + +K R S + G H V AL N ++ Q++ + +LP Sbjct: 14 YWKKLATTRKERERSG--EFIVEGFHLVEEALKN-KEQVLQIIVREGV--------DLPM 62 Query: 90 PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +P+ + + +V KE QG+ A+ P L + A LL +D V DP Sbjct: 63 LWPIDGIAIIEVTSVVAKEFAETETSQGVFAICKQPALEEEVKASWRKVLL--IDAVQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ++R+A A D +I K + + ++A G+ HIP +R LT+ + + + Sbjct: 121 GNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIPVVR-EELTECVDFLQA 179 Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIK 261 G G + D +I+ A+I+G EG G++P Q A + ++ +P G + Sbjct: 180 QGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGIQP--QLLAMTDQNIIIPIFGQAE 237 Query: 262 ALNVSNAAAVALY 274 +LNV+ A + LY Sbjct: 238 SLNVAVATGIVLY 250 >gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma proteobacterium EB000-45B06] gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine bacterium 562] Length = 240 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 69/140 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD++ DP N+GA +RSA D +I K + +++ K + G E I ++ Sbjct: 92 LILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVT 151 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+ + GLS + K + A+I+GAE G+R KT E + Sbjct: 152 NLVNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAEESGVREKTLERCDHKIN 211 Query: 254 LHMPGIIKALNVSNAAAVAL 273 L + K+ NVS A + L Sbjct: 212 LSSNKLFKSFNVSVATGIIL 231 >gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi] Length = 366 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L+ A LS D + ++ L+ V +PHN+G I+RS F G++ + ES Sbjct: 204 GLDVAAYLSEAGD----TDCVLALEDVGNPHNLGGIMRSCAHFGVKGLLVND-AAQLESG 258 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++A G EH+ I L DAL + + G+ + SS L + K ++LG Sbjct: 259 AAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKTVIVLG 318 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 EG GL + + G +++LN+S A + L + QNH Sbjct: 319 QEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 365 >gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 272 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL P ++V +N++ + +++ VND N Sbjct: 76 PAPVYAVSPELAERVTGYH-VHRGALASMQRKPL--PDAESVLQNARRVAIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI RSA A D ++ + + K + GA+ +PY R+ + L+ + G Sbjct: 133 TGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRDAG 192 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ + L+ D K + + +++AL+LGAEG GL + A + M + +L Sbjct: 193 FKILALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei ATCC BAA-286] Length = 246 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQG-------LALETAPLLSPTLDAVRNSQLLMVLDHV 141 H V+ VP + +D+ K HQG + E + P L ++VLD + Sbjct: 47 HDVAVQRVPNERLDRFTRKN--HQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGI 104 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N GAI R+ + I+ + S + +A K+++GAL IP + NLT A+Q Sbjct: 105 TDVRNFGAIARTCEVAGVNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQF 164 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + G + + +S+ + EI IA ++GAE G+ + A ++ + G I Sbjct: 165 LRNSGIKVVA-ASERGADIYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTI 223 Query: 261 KALNVSNAAAVALY 274 +LNVS AA V +Y Sbjct: 224 GSLNVSVAAGVLIY 237 >gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185 + ++ + +V DH+ DP N+G +LR+ G +I +R SP V+ K++SGA+ Sbjct: 86 ETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVGALIPRERSSPMNQTVV-KASSGAIF 144 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ +++NL L++ G + K E EI AL+LG+E KG+ Sbjct: 145 HLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRELEIVLP-CALVLGSEDKGVSKSLL 203 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + + M G +LNV +A A+A++ Sbjct: 204 EVSDEVLSIPMKGKTTSLNVGSAGAIAMW 232 >gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937] gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937] Length = 362 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L+ A LS D + ++ L+ V +PHN+G I+RS F G++ + ES Sbjct: 200 GLDVAAYLSEAGD----TDCVLALEDVGNPHNLGGIMRSCAHFGVKGLLVND-AAQLESG 254 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++A G EH+ I L DAL + + G+ + SS L + K ++LG Sbjct: 255 AAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKTVIVLG 314 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 EG GL + + G +++LN+S A + L + QNH Sbjct: 315 QEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 361 >gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC31A08] Length = 240 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 69/140 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD++ DP N+GA +RSA D +I K + +++ K + G E I ++ Sbjct: 92 LILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVT 151 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+ + GLS + K + A+I+GAE G+R KT E + Sbjct: 152 NLVNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAEESGVREKTLERCDHKIN 211 Query: 254 LHMPGIIKALNVSNAAAVAL 273 L + K+ NVS A + L Sbjct: 212 LSSNKLFKSFNVSVATGIIL 231 >gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira hyodysenteriae WA1] Length = 236 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 6/188 (3%) Query: 92 PVKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P+K V ++KIVGK + + + + + + R + L+ +LD + D HN Sbjct: 44 PIKNVDKNEMEKIVGKIYSIAADIKENVEIGIDSFIEKAFEK-RENPLIFILDSITDVHN 102 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A F GII K S + + + + GA H+P +NL + M G Sbjct: 103 LGAIIRNAYFFDVAGIIMPKDNSAPINEKVYEISEGAAYHLPISIETNLNRVIDLMKDKG 162 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F S + LE N A+ILG E G+R ++ + ++ +LNVS Sbjct: 163 FWIYYASEKGETSLEDFKFNSPTAIILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVS 222 Query: 267 NAAAVALY 274 A+A+ Y Sbjct: 223 AASAIIGY 230 >gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 249 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 22/240 (9%) Query: 51 LYGVHTVSAALNNP---SRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTI 101 +YG+H + A+ + S+ FQ+ K L L N+P + VP Sbjct: 7 IYGIHPLIEAIQSKRSISKLFFQIGWKKKCNPYYKKLISLSKRENIP----IHIVPKNKF 62 Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++ K HQG+ +P+ L P + LL++LD + D N G+I+R+A Sbjct: 63 HQLNNKN--HQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 D II +Y+ + K++SGAL +P + N+ ++ + G + + + Sbjct: 121 ACAGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATE 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S + + A+ILG E G+ PK E A + I +LNVS A + LY Sbjct: 181 KSNIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILY 240 >gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 280 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 22/266 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATK------NALARL 81 DY + +SRH + L++ TV AL R LLA + LA L Sbjct: 19 DYVSLTDVALRSRHEPA-KGLYIAESSTVLGRALRAGHRPRSVLLAPRWVPDLERMLAEL 77 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV--- 137 D PV ++ I G VH+G LA P L P D + ++ Sbjct: 78 PDDGAT---VPVYVADEPVLEAITGFH-VHRGALAAMHRPPLPPVADVLAAARGGAGARR 133 Query: 138 ---LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ V D N+GA RSA A D ++ T R + + + G + +P+ RI Sbjct: 134 VAVLEDVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDP 193 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251 D ++++ S GF T L+ +D L++ + + +++AL+LGAEG GL+P T + + Sbjct: 194 WPDGIEELRSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLV 253 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M G + +LNV+ AAAVA + T+ Sbjct: 254 VRIPMAGGVDSLNVAAAAAVAFWATR 279 >gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13] gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23] Length = 412 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58 + K +H KL+ + K NQKS H S+ +N ++YG ++V Sbjct: 79 YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110 AAL NPSR N +RL + +P V + +DK ++ V Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 184 Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136 H +ALET PL LS T + L + Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE +P + Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304 Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242 + Q+M W F T L++ + + L + L++G E +G+R Sbjct: 305 EFFTKSQEMGGWTFITSHLANXTSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364 Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] Length = 288 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV P+ + ++ G +H+G P+++ V R ++ + V++++ D N+GA Sbjct: 82 IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203 ++RSA A D ++ T A+ + G + IP+ RI ++++H Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGMRELH 200 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251 GF T+ ++ D L++ ++ D++ALI G EG GL T A Sbjct: 201 DLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 261 VKIPMSHSVDSLNVAASSAVAFYST 285 >gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] Length = 244 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 11/189 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 VP + +D+ K HQG L + P +++V + + + ++LD V D N G Sbjct: 54 VPVERLDRFSSKN--HQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFG 111 Query: 149 AILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 AILRSA A D + I++ +P V+ SA GA + +P ++ +L D + + + Sbjct: 112 AILRSAAATGVDAVFISSTGSAPLNGDVVKTSAGGAFK-VPISKVQHLKDVVYYLKAHDI 170 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+G++ S + L +AL+ GAE G+ + A L M + +LNVS Sbjct: 171 PTLGITEKSTETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSV 230 Query: 268 AAAVALYIT 276 A AV Y T Sbjct: 231 ACAVVFYET 239 >gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae FH] Length = 239 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+T L D+ S L+M LD + D HN GAILR+ +A DGII K ++ Sbjct: 76 LKTIEQLIQITDSKSTSTLVM-LDEIQDLHNFGAILRTCMAAEVDGIIFKKHNQAPINST 134 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLE-QEIKNDKIALIL 233 + +++ G + + ++++NL+ A+ + GF T+ + D + KP + +++ DK L++ Sbjct: 135 VIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLKPKDYRQVDFDKRILLV 194 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G E KGL + A + M + +LNVS A + L+ Sbjct: 195 GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 235 >gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 233 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 VK V +DK+V HQG LE +++++LDH+ D +N+G I Sbjct: 40 VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A F II K+ + + K +SG + +I ++++ A+ K+ F Sbjct: 98 IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K QEI+ N A+ILG E G++ + + + + G + +LNV+ A Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217 Query: 270 AVALYITQNHFAK 282 + L+ + + K Sbjct: 218 GIILFFLKQNIKK 230 >gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 196 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 4/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A R L +V+D+V+DPHN+ AILRS AF + Y+ S VL KS++ A + Sbjct: 18 ARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHLY--YTTSAFPVLGQKSSASARKW 75 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R S+ T + + FQ + S+ KPL + A+ILG E G P+ Sbjct: 76 VMRTRHSDATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGNEHNGASPELA 135 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ M G++++LNVS AAA+ LY Sbjct: 136 QVADGEIYIPMMGMVQSLNVSVAAAIILY 164 >gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 270 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V + +P + LL + R++ A+L Sbjct: 20 DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRR---RIEALADLL 75 Query: 89 HPF--PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P P P + +VG LA+ + AP L+ V S+ L VL+ V D Sbjct: 76 APLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAE-HLVATSRRLAVLEGVGDHE 134 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+ R+A A DG++ + S + + G + +P+ R+ + D L + Sbjct: 135 NLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDG 194 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF+ L+ +D+ E + + +A++LG+EG GL + A + M G + +L Sbjct: 195 GFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSL 254 Query: 264 NVSNAAAVALY 274 NV+ A A+A + Sbjct: 255 NVATAGAIAFH 265 >gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27] gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27] Length = 218 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 91 FPVKTVPPQTID------KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 F +K P I + + K HQG+ + L+ +L V+ +Q L+VL + D Sbjct: 28 FALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLAASLKEVKKAQKLLVLCGITDV 87 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG I RSA DG+I + ++ +S+ G + +P+ +SN D + ++ + Sbjct: 88 GNIGGIFRSAYCLGMDGVILDFAKELAYEGIV-RSSLGLMYDLPFSVMSNTLDLINELKT 146 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF +G S +E + K AL LG+E +GL K ++ + M +LN Sbjct: 147 SGFLCLGASMQGSSQVEN-LSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLN 205 Query: 265 VSNAAAVAL 273 VS AA + + Sbjct: 206 VSVAAGILM 214 >gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 212 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 30/215 (13%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143 P+ +V ++ + G HQG L L +L+ + + + +VLD V D Sbjct: 1 IPIASVDKGVLNTLSGNRP-HQGYVLRCGKLFFESLNKIPHPDEDSAAPSMWLVLDEVVD 59 Query: 144 PHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 P N+GA+LRSA GI+ + S S ++ +++GALE + SNL L Sbjct: 60 PQNLGALLRSAYFLGGSTKVGILVCAKNSAPPSPTVSAASAGALELVDLYSTSNLPRTLA 119 Query: 201 KMHSWGFQTIGLSSDSKKPLE------QEIK--NDKIALILGAEGKGLRPKTQETATSMA 252 S GF+ +G S+ + L QEI + L+LG+EG GLR ++ T Sbjct: 120 AAESDGFRIVGASASVPRDLNVPLYELQEISEMSGPTILVLGSEGHGLRSLVAKSCTEF- 178 Query: 253 HLHMPGIIKA-----LNVSNAAAVALYITQNHFAK 282 + +PG + A LNVS + L+ HF K Sbjct: 179 -VKVPGAVDAGGVDSLNVSVTGGILLW----HFLK 208 >gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] Length = 241 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP + +D+I K HQG+ +P+ + PT+ L+++LD + D N G Sbjct: 49 VPIEKLDRITRKN--HQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFG 106 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A D ++ + S + K+++GAL I R +LT ++ + G Q Sbjct: 107 AIARTAACAGVDALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQ 166 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + + + A+++GAE G+ A +A + M G I +LNVS + Sbjct: 167 VVACTEKTGDTIYKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVS 226 Query: 269 AAVALY 274 A V +Y Sbjct: 227 AGVIIY 232 >gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 233 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 VK V +DK+V HQG LE +++++LDH+ D +N+G I Sbjct: 40 VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A F II K+ + + K +SG + +I ++++ A+ K+ F Sbjct: 98 IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K QEI+ N A+ILG E G++ + + + + G + +LNV+ A Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217 Query: 270 AVALYITQNHFAK 282 + L+ + + K Sbjct: 218 GIILFFLKQNIKK 230 >gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] Length = 288 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV P+ + ++ G +H+G P+++ V R ++ + V++++ D N+GA Sbjct: 82 IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203 ++RSA A D ++ T A+ + G + IP+ RI ++++H Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGMRELH 200 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251 GF T+ ++ D L++ ++ D++ALI G EG GL T A Sbjct: 201 DLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYST 285 >gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora erythraea NRRL 2338] Length = 287 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V + +P + LL + R++ A+L Sbjct: 37 DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRR---RIEALADLL 92 Query: 89 HPF--PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P P P + +VG LA+ + AP L+ V S+ L VL+ V D Sbjct: 93 APLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAE-HLVATSRRLAVLEGVGDHE 151 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+ R+A A DG++ + S + + G + +P+ R+ + D L + Sbjct: 152 NLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDG 211 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF+ L+ +D+ E + + +A++LG+EG GL + A + M G + +L Sbjct: 212 GFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSL 271 Query: 264 NVSNAAAVALY 274 NV+ A A+A + Sbjct: 272 NVATAGAIAFH 282 >gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 288 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV P+ + ++ G +H+G P+++ V R ++ + V++++ D N+GA Sbjct: 82 IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203 ++RSA A D ++ T A+ + G + IP+ RI ++++H Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTGMRELH 200 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251 GF T+ ++ D L++ ++ D++ALI G EG GL T A Sbjct: 201 DLGFTTVAMALEDDSISLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYST 285 >gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB] Length = 412 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 86/342 (25%), Positives = 138/342 (40%), Gaps = 96/342 (28%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58 + K +H KL+ + K NQKS H S+ +N ++YG ++V Sbjct: 79 YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP-----QTIDK----IVGKEA 109 AAL NPSR N +RL + +P ++TV + +DK ++ Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKI-LQTVDELKVTTELVDKHRLNLLTNYG 183 Query: 110 VHQGLALETAPL-----------------LS-----------------PTLDAVRNSQLL 135 VH +ALET PL LS T + L Sbjct: 184 VHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLG 243 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE +P + Sbjct: 244 LYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKP 303 Query: 196 TDAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLR 241 + Q+M W F T L++ + + L + L++G E +G+R Sbjct: 304 LEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVR 363 Query: 242 PKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 364 TNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 250 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 23/241 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIV 105 ++ G + V L R+ F+LL + + L PV VP +D + Sbjct: 4 WICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDSL- 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMV-LDHVNDPHNIGAILRSAVAFS 158 HQG+ALE + L + R LL + LD + +P N+G +LRSA A Sbjct: 63 --SESHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL----QKMHSWGFQTIGL-S 213 G++ + + + +++SGA EH+ + +NL AL ++ +W +GL Sbjct: 121 AHGVVIPLARAAGITPAVVQASSGASEHL-LVAQANLAQALETFKEEADAW---VVGLEG 176 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 S +P ++ + + L++G EG+G+RP + + L M G I++LN + A ++ L Sbjct: 177 SPESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIML 236 Query: 274 Y 274 Y Sbjct: 237 Y 237 >gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 249 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 15/234 (6%) Query: 48 NLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +FL G H AL K +L+ ++NA + WD PV V + I + Sbjct: 28 GMFLAEGYHLAEEALK--GEKAIELIISENAELPVRWDYG---ELPVTMVTDEIIKSLSD 82 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E QG+ +P +V+ S L++ D V DP N+G ++R+A A D +I K Sbjct: 83 TE-TPQGVIAVCKEEKTPA--SVKGSTFLLI-DAVQDPGNLGTMIRTADAAGIDAVIVGK 138 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + + +SA G+ H+P IR +L + + ++ G + ++ P ++ Sbjct: 139 GSADIYNPKVLRSAQGSHFHLPIIR-GSLNEWMDRLEEEEIPVYGTALENGSPYKETHPA 197 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALYITQN 278 + AL++G EG G+ P+ A + +L++P G ++LNV+ AA + LY +N Sbjct: 198 GRFALLVGNEGSGVSPEL--LARTDKNLYIPIYGKSESLNVAVAAGILLYYLKN 249 >gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 244 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100 +YG H V F+LL + + W D + + F +K V Sbjct: 5 LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKNTKIKVNVVSENK 53 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154 +D+++ + HQG+ + + + + N L+++LD ++DP+N GAI+RS Sbjct: 54 LDQLLETQTQHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSC 113 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212 + DGII + ++ + K++SG+ +I + +NL +A++ + + GF L Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNL 173 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAA 270 + +S + + N K A+I+G E KG+ T S ++++P I + N S A + Sbjct: 174 NQNSIDMTKTQFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACS 230 Query: 271 VALYITQNHFAK 282 + + N+ K Sbjct: 231 IICFWIANYLNK 242 >gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] Length = 260 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LLMVL+ + DP N+G I+R+A DGI+ +K + + +S G++ +P++ I Sbjct: 110 LLMVLEDLQDPGNVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIE 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ +AL+ + T K + E A +G EG GL + E A Sbjct: 170 NMEEALRLLKKKKVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + AA + +Y Sbjct: 230 IPMEGQVESLNAAMAAGILMY 250 >gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor bescii DSM 6725] Length = 253 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 72/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ R+ Sbjct: 95 FLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G ++ KP+ + +++G+EGKG+ +E A + Sbjct: 155 NLRRTIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVIGSEGKGITRLVKEGADFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G + + N S AA + + Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235 >gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] Length = 248 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ +++ ++L ++ L ++ PV+ VP + +D+ Sbjct: 3 ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ A++ + G + S + Sbjct: 120 AGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237 >gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae YJM789] gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291] gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796] gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3] Length = 412 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58 + K +H KL+ + K NQKS H S+ +N ++YG ++V Sbjct: 79 YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110 AAL NPSR N +RL + +P V + +DK ++ V Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 184 Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136 H +ALET PL LS T + L + Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE +P + Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304 Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242 + Q+M W F T L++ + + L + L++G E +G+R Sbjct: 305 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364 Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] Length = 226 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG E +LD ++ + +L ++D NIGAI+R+A A C G++ + Sbjct: 61 HQGFLAEVEEFEFKSLDEIKKQNFIAILYGLSDVGNIGAIVRTAHALGCGGVVIVAKNLA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229 E + +++SGA + + L ++ GF+ +S K E+K D K+ Sbjct: 121 MEGVL--RASSGAAYETDIALVEDGLSLLNELKQVGFKIYATASGGKNA--HEVKFDRKV 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 AL++G+EG+GL K + + + M +LNVS A A+ Sbjct: 177 ALVMGSEGEGLHKKVLTKSDEIVGIKMKNDWDSLNVSAAFAI 218 >gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 272 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 9/191 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 PV T + + K+ G A+ +G+ P+++ + RN+ + VL++V +P NIGAI Sbjct: 78 PVYTAEYELLVKLTGF-ALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAI 136 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSWG 206 RSA A D ++ T S A+ + G + IP+ T D +Q + + G Sbjct: 137 FRSAAALHMDAVLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLG 196 Query: 207 FQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T + L DS ++ +++ +K+A+ILG EG GL +T + M + +L Sbjct: 197 FKTAAMALRDDSVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSL 256 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 257 NVAAASAVAFW 267 >gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38] gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38] Length = 227 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG ++ LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVITHLLNSHKEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + K Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 179 CALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J] Length = 245 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 11/187 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ V P+ + ++ + QG+ E A SP + + LL L+ V DP N+G ++ Sbjct: 63 PIYIVTPEVLKELT-ESPSPQGIVAEIAMPDSPLPLSQKGKYLL--LEDVQDPGNLGTMI 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A DG+I +++ + +S G+ H+P R +++ Q + S G + Sbjct: 120 RTADAACFDGVILSEKTVDLYNQKTLRSMQGSHFHLPVWR-TDVYSFCQTIQSNGVPVLA 178 Query: 212 --LSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LS DS K L Q ND L++G EG+G+ + A + H++MPG ++LNV+ Sbjct: 179 TTLSKDSIDYKALPQ---NDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAV 235 Query: 268 AAAVALY 274 AA + ++ Sbjct: 236 AAGILIF 242 >gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 11/203 (5%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 N D+ + H V V P+ + ++ + QG+ E A + S L+ ++ + L Sbjct: 49 NIFVLEDYADRVSHFSMVTYVTPEILKELTDSKT-PQGIIAELA-MPSLPLENLKVGRYL 106 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 VL+ V DP N+G ++R+A A DG++ +++ + + +S G+ H+P R +N+ Sbjct: 107 -VLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR-TNV 164 Query: 196 TDALQKMHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +A QK+ + T+ S S K +E N AL++G EG G+ + A + Sbjct: 165 YEACQKLQNLDVPLIATTLSKESVSYKTVEH---NGNFALVMGNEGNGISDSMTKQADIL 221 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 AH+ MPG ++LNV+ A + L+ Sbjct: 222 AHIIMPGQAESLNVAVATGIVLF 244 >gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] Length = 292 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV P+ + ++ G +H+G P+++ V R ++ + V++++ D N+GA Sbjct: 82 IPVYVASPEQLKRLTGYR-LHRGALAAMKRWSLPSVEEVCRGARRVAVMENIVDHTNVGA 140 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMH 203 ++RSA A D ++ T A+ + G + +P+ RI ++++H Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTGMRELH 200 Query: 204 SWGFQTIGLS----SDSKKPLEQEIKN--------DKIALILGAEGKGLRPKTQETATSM 251 GF T+ ++ S S L + + N DK+ALI G EG GL T A Sbjct: 201 DLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTISRADLT 260 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ ++AVA Y T+ Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYATR 286 >gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 273 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T P + + G L PLL + R ++ ++V+ V D NIGAI Sbjct: 78 LPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T+ + + + G++ +P+ + L D++ + GF+T Sbjct: 138 FRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPW---TWLDDSIASLSRLGFRTA 194 Query: 211 GLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ +D PL+ ++A+++G EG GL +T E A + + M + +LNV+ Sbjct: 195 AMALTDRSVPLDDPALATEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAA 254 Query: 268 AAAVALY 274 A+AVA + Sbjct: 255 ASAVAFW 261 >gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] Length = 273 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147 PV T + ++ G + +G+ A+ PL P L+ + + ++ +++L++V +P N+ Sbjct: 78 IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204 GAI RSA A + D I+ +K S + + G + IP+ + + T D + ++ Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKE 194 Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G++ + ++ +D ++ E + DK+A+ILG EG GL +T + + M + Sbjct: 195 LGYKNVAMALTDRSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+AVA + Sbjct: 255 SLNVAAASAVAFW 267 >gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] Length = 253 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 72/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ R+ Sbjct: 95 FLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G ++ KP+ + +++G+EGKG+ +E A + Sbjct: 155 NLRRTIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVIGSEGKGISRLVKEGADFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G + + N S AA + + Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235 >gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] Length = 226 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG E ++D ++ + VL ++D NIGAI+R+A A C GI+ + Sbjct: 61 HQGFLAEVEEFEFKSIDEIKKQNFIAVLYGLSDVGNIGAIVRTAHALGCGGIVVVAKNLA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229 E + +++SGA + + L ++ GF+ +S K E+K D K+ Sbjct: 121 MEGVL--RASSGAAYEANIALVEDGLSLLNELKQVGFKIYATASGGKNA--HEVKFDQKV 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 AL++G+EG+GL K + + + M +LNVS A A+ Sbjct: 177 ALVMGSEGEGLHKKVLAKSDEIVGIKMKNDWDSLNVSAAFAI 218 >gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces cerevisiae RM11-1a] Length = 385 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58 + K +H KL+ + K NQKS H S+ +N ++YG ++V Sbjct: 52 YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 106 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110 AAL NPSR N +RL + +P V + +DK ++ V Sbjct: 107 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 157 Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136 H +ALET PL LS T + L + Sbjct: 158 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 217 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE +P + Sbjct: 218 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 277 Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242 + Q+M W F T L++ + + L + L++G E +G+R Sbjct: 278 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 337 Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 338 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 378 >gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] Length = 240 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L++LD V DP N+G + R+ A GII + S K+++GAL I +++ Sbjct: 94 VLLLLDQVQDPGNLGTLARTLAALGGAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQVT 153 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL L + GF + D + + ++ L+LG E KG+RP + H Sbjct: 154 NLARTLDHIDQAGFNIYAATMDQGQSVLEQTFVFPAVLVLGGEEKGIRPNVLKRCPGKIH 213 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G + +LNV++A A+ L Sbjct: 214 IPMAGGMDSLNVAHAGALIL 233 >gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] Length = 251 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 18/254 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+ +K R Q + + G H V A+ + I +L+ ++ W N Sbjct: 13 KQWKKL--LTKKGR--LQTKRFLIEGEHLVEEAVR--AGIIKELIVREDVQVPGSWKKNA 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + +++ K++ + QG+ + T R LL LD + DP N+ Sbjct: 67 ADLITID----ESVAKVLSETETTQGI-FAVCEMKQQTERLERGRYLL--LDRLQDPGNV 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A DG+I ++ + ++ G++ H+P I +S L +A+Q +H G Sbjct: 120 GTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGSIFHLPVIMMS-LEEAIQDLHELGV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + +P I LI+G E +G+ P+ + A++ + G ++LN + Sbjct: 179 FILGTALRGAQPYTDVENLGAIGLIIGNEAQGVAPELLDQCDGRAYIPIRGKAESLNAAV 238 Query: 268 AAAVALYITQNHFA 281 AA + LY HFA Sbjct: 239 AAGILLY----HFA 248 >gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 273 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147 PV T + ++ G + +G+ A+ PL P L+ + + ++ +++L++V +P N+ Sbjct: 78 IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204 GAI RSA A + D I+ +K S + + G + IP+ + + T D + ++ Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMYRLKE 194 Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G++ + ++ +D ++ E + DK+A+ILG EG GL +T + + M + Sbjct: 195 LGYKNVAMALTDRSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+AVA + Sbjct: 255 SLNVAAASAVAFW 267 >gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 273 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T P + + G L PLL + R ++ ++V+ V D NIGAI Sbjct: 78 LPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T+ + + + G++ +P+ + L D++ + GF+T Sbjct: 138 FRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPW---TWLDDSIASLSRLGFRTA 194 Query: 211 GLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ +D PL+ ++A+++G EG GL +T E A + + M + +LNV+ Sbjct: 195 AMALTDRSVPLDDPALAAEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAA 254 Query: 268 AAAVALY 274 A+AVA + Sbjct: 255 ASAVAFW 261 >gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78] gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78] Length = 273 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + R + E LF+ G V AL++ + +L T+ L + D Sbjct: 17 DYTSLTDVQLRRRREPE-EGLFIAEGEKVVRRALDS-GHGMRSMLLTEKWLPAMA-DVIE 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV V P+T +++ G VH+G +L PL +P D + ++ + V + + D Sbjct: 74 ASEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHA 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA R+A A D + T R + K + GA+ +PY R+ + + Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQA 191 Query: 206 GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF SD L+ + ++ ++AL+ G+EG GL P A + M I + Sbjct: 192 GFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDS 251 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A AV Y T+ + Sbjct: 252 LNVAAATAVVFYATRKN 268 >gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 23/256 (8%) Query: 39 KSRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKT 95 K+ T P + F+ YG V AL+NP I +LL NA +D VK Sbjct: 2 KTNQTKHPRDKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61 Query: 96 V--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---------------SQLLMVL 138 P+ I +I QG+ ++ P P ++A+ + + L Sbjct: 62 SRESPKYITRISRNGRHDQGVVVDVIP---PAMEALSTYLERQQSHPPNQKPQTHKFLAL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V +P N+G I+R+ +A DGII ++ P + ++ K+++G + +R + L+DA Sbjct: 119 DGVKNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDA 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 LQ++ + GLS + L + +LG E +G+ + + + Sbjct: 179 LQQLRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEF 238 Query: 259 IIKALNVSNAAAVALY 274 ++LNV++AAAV + Sbjct: 239 PAESLNVASAAAVVCF 254 >gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 256 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 8/152 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182 D V+ ++LD V DP N+G I+RSA AF+ DG+ T Y+P + +S G Sbjct: 100 DIVKEGGFYVILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPK----VLRSTMG 155 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + + + G + + S ++K + + ALI G E +G+ Sbjct: 156 SIFHLPVVNDVEPSRLFHVLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNR 215 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E S + M G+ ++LNVS AA++ LY Sbjct: 216 LLDEFIDSSFKIPMDGMAESLNVSVAASICLY 247 >gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] Length = 255 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 14/252 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF 91 MQ N K R + N ++G+ V A+ + I L + + + L F Sbjct: 1 MQDRNFK-RQEPRESNQMIFGIRAVIEAIK-AGKDIESLFIQRGLTGGIYTELKTLLREF 58 Query: 92 --PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142 P + VP + +++I K HQG+ +P+ + P + + L+++LD++ Sbjct: 59 DIPSQQVPVEKLNRITAKN--HQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N GAI R+A I+ KR + + K+++GAL +P R +L L+ + Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + + + + A+I+GAE G+ + + + + M G I++ Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236 Query: 263 LNVSNAAAVALY 274 LNVS +A + LY Sbjct: 237 LNVSVSAGIILY 248 >gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF] gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 273 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + R + E LF+ G V AL++ + +L T+ L + D Sbjct: 17 DYTSLTDVQLRRRREPE-EGLFIAEGEKVVRRALDS-GHGMRSMLLTEKWLPAMA-DVIE 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV V P+T +++ G VH+G +L PL +P D + ++ + V + + D Sbjct: 74 ASEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHA 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA R+A A D + T R + K + GA+ +PY R+ + + Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQA 191 Query: 206 GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF SD L+ + ++ ++AL+ G+EG GL P A + M I + Sbjct: 192 GFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDS 251 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A AV Y T+ + Sbjct: 252 LNVAAATAVVFYATRKN 268 >gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] Length = 270 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 T D +++S +L++VLD+V DP N+G ++R+A A C G+I TK + S ++ G Sbjct: 108 TFDDLQSSDRELIVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMG 167 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +L H+P I + + G + + + DS +A++ G EG G+ Sbjct: 168 SLFHLPVITGVAEQEVAAFLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSK 227 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A ++ + G ++LNV+ AAAV LY Sbjct: 228 VILEKADERLYIPLYGRAESLNVAVAAAVILY 259 >gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] Length = 270 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 4/188 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ T P + I G + L P L + ++ + + VL+++ +P N+GAI Sbjct: 79 IPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGAI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKMHSWGFQT 209 RSA A + D ++ T S + + G + IP+ I ++ +H+ GF+T Sbjct: 139 FRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFKT 198 Query: 210 --IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L+ +S ++ +K+ +K+A+ILG EG+GL T ++ + M + +LNV+ Sbjct: 199 AAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNVA 258 Query: 267 NAAAVALY 274 A+AVA + Sbjct: 259 AASAVAFW 266 >gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila RKU-1] gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2] gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] Length = 242 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 4/167 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG+ + +++ + ++ L+++LD + DPHN+GAI+R++V +GII K Sbjct: 65 HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKD 124 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K + G + ++NL ++++ G T D P+ +E Sbjct: 125 KSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYEEDFTF 183 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230 >gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] Length = 304 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQ-----LLMVLDHV 141 P PV + ++++ G LA P P LD V + + VL+ + Sbjct: 86 PVPVFVASMELMEQLTGFNVTRGALAAFRRPRQIPVDEFLDGVVEAAGERPVRVCVLEGI 145 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----- 196 D N+GAI RSA A + DGI+ + A+ + G + +P+ RI + Sbjct: 146 VDHTNVGAIFRSAAALNVDGILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEARVWPH 205 Query: 197 DALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 D L +H GF + L+ DS P+ QEI D++A+ +G EG GL KT Sbjct: 206 DGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEI--DRLAIFMGTEGAGLGAKTIAGCDRA 263 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 264 VRIPMAHGVDSLNVAAASAVAFW 286 >gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Taeniopygia guttata] Length = 198 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 26/186 (13%) Query: 113 GLALETAPL-LSPTLDAVR---------NSQLL-MVLDHVNDPHNIGAILRSAVAFSCDG 161 G+ LE APL L DA N QLL +VL+H+ DP N+GA+LRSA D Sbjct: 4 GVCLEAAPLPLRSLRDAEEPQLGHGERGNRQLLWLVLEHIQDPMNLGALLRSAYFLGVDR 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ T+ S + V++K+++GA+E +L L+ + G++ +G S + + Sbjct: 64 VVATRGNSCPLTPVVSKASAGAMEVFDVYGTDDLQGFLKAKSAEGWEVVGTVSRPEDVED 123 Query: 222 ------QEIKNDK-IALILGAEGKGLRPKTQETATSM------AHLHMPGIIKALNVSNA 268 E + DK + +++G+EG+GL +TQ+ M LH PG + +LNVS A Sbjct: 124 VPVISCSEFQWDKPVIVVIGSEGEGLSLETQQQCQRMLAIPPGRALH-PG-LDSLNVSVA 181 Query: 269 AAVALY 274 A + L+ Sbjct: 182 AGILLH 187 >gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99] gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99] Length = 227 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 10/226 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG ++ LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I R Sbjct: 61 GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVILDFAR 120 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 E V +S+ G + +P+ + N D + ++ + GF +G S E + Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 178 KCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 283 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 17/199 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV P + K+ G E L P L D VR ++ + VL+ + + N+GAI Sbjct: 82 PVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHTNVGAIF 141 Query: 152 RSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLT------------DA 198 RSA A D ++ T Y P + + + G + +P+ RI Sbjct: 142 RSAAALGIDAVLVTPACYDPLYRRAV-RVSMGTVFQVPWTRIGEEAGAGATGTGGWAPTG 200 Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH 255 + +H GF+T + +D PL+ N +++AL+ G EG GL T + Sbjct: 201 VPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDYTVRIP 260 Query: 256 MPGIIKALNVSNAAAVALY 274 M + +LNV+ A+AVA + Sbjct: 261 MACGVDSLNVAAASAVAFW 279 >gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 239 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 42/255 (16%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDW 83 ++YKK+Q N+K R Q L G + +S A + L ++K+ + R+D+ Sbjct: 12 KEYKKLQ--NKKYRKEKQQ--FLLEGFNLISEA--KKYTNVITLESSKDLIYKDSIRVDY 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + H K+ PQ+I +G A L PT + + + ++L++V+D Sbjct: 66 EI-IKHLSETKS--PQSI---IG-----------VASFLKPT-NKINKT---VILNNVSD 104 Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGAL-EHIPYIRISNLTDALQ 200 P NIG ILRSA+AF D +I Y+P + +S+ GA+ ++ I SNL + L+ Sbjct: 105 PGNIGTILRSALAFEFDTVIIENIDIYNPK----IIRSSLGAIFSNLNIISTSNLEEILK 160 Query: 201 KMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + F+ L ++KK E N+KIA+++G E G+ + A+ +++P Sbjct: 161 DLKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASE--KVYIPI 218 Query: 259 IIKALNVSNAAAVAL 273 ++LNV++A A+ L Sbjct: 219 AFESLNVASALAIIL 233 >gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 268 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 10/247 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPF 91 +QS QK ++ + + G+ V AL + + I +L+ L + + + +P Sbjct: 16 LQSLLQK-KYRDREGKFLVEGLRFVQEALQSGA-DIEELILAAGVLEKNPSFQSIIPDKI 73 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ + Q KI E QG+A + + L V N L+++D V DP N+G Sbjct: 74 PITIIADQLFKKITDTET-PQGIAALVRKKEFRAEDLFVVANP-FLLIIDKVQDPGNLGT 131 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGF 207 I+R+A A G+ K + + ++ G++ H+P I ++ +A L K H Sbjct: 132 IIRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIINFDSIEEACHLAKKHGLKL 191 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +S DS L + ++ +AL++G E +G E + + MPG ++LNVS Sbjct: 192 IVTDISKDSSSYLAVDY-SEPVALVVGNEARGASSFAIENSDYRVAIKMPGKAESLNVSV 250 Query: 268 AAAVALY 274 AA + L+ Sbjct: 251 AAGIILF 257 >gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 290 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DP N+G I+R+A A DGII + + + + + + A G++ H+P ++ L Sbjct: 143 VILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLPVLQTGAL 202 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHL 254 + + G + IG S K L + K + +ILG E KG+ + + L Sbjct: 203 EKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSMADLCDDLYKL 262 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNVS AA + +Y Sbjct: 263 PMYGHAESLNVSVAAGILMY 282 >gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] Length = 275 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 8/196 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T +T+ + G E L PL + RN++ + VL+ + D N+GAI Sbjct: 80 PVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGAIF 139 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206 RSA A + D ++ T + + G + +P+ +I + + ++HS G Sbjct: 140 RSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHSLG 199 Query: 207 FQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T ++ SD ++ K+A++LG EG GL T + M + +L Sbjct: 200 FKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVDSL 259 Query: 264 NVSNAAAVALYITQNH 279 NV+ A+AVA + N Sbjct: 260 NVAAASAVAFWQLGNR 275 >gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 237 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 42/255 (16%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDW 83 ++YKK+Q N+K R Q L G + +S A + L ++K+ + R+D+ Sbjct: 10 KEYKKLQ--NKKYRKEKQQ--FLLEGFNLISEA--KKYTNVITLESSKDLIYKDSIRVDY 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + H K+ PQ+I +G A L PT + + + ++L++V+D Sbjct: 64 EI-IKHLSETKS--PQSI---IG-----------VASFLKPT-NKINKT---VILNNVSD 102 Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGAL-EHIPYIRISNLTDALQ 200 P NIG ILRSA+AF D +I Y+P + +S+ GA+ ++ I SNL + L+ Sbjct: 103 PGNIGTILRSALAFEFDTVIIENIDIYNPK----IIRSSLGAIFSNLNIISTSNLEEILK 158 Query: 201 KMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + F+ L ++KK E N+KIA+++G E G+ + A+ +++P Sbjct: 159 DLKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASE--KVYIPI 216 Query: 259 IIKALNVSNAAAVAL 273 ++LNV++A A+ L Sbjct: 217 AFESLNVASALAIIL 231 >gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] Length = 244 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD ++D N GAI+R+A GII K+ + V K+++GA +IP ++ Sbjct: 97 LFILLDQLSDVRNFGAIIRTAECTGVHGIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVD 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ DA+ + G Q + + ++ L + A+++G E G+ P + A Sbjct: 157 HIKDAIYYLQGSGVQVVAATEKTETTLFETDFTSPTAIVMGREDSGVSPGVLKIVDKQAK 216 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L + G I +LNVS A LY Sbjct: 217 LPLKGSIASLNVSVACGAFLY 237 >gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] Length = 254 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-QDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T+ + M GF G ++ L++ K+D A+I+G EG+G+ + ++ Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4] gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4] Length = 233 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+ LD R +++LD + P N+G ILR+A A G+I +R + ++ KS++ Sbjct: 73 LAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVAALDPMVVKSSA 132 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G P +R + +A + + G+ L + + + + A +LG E +G+ Sbjct: 133 GVAFRAPVLRCGSAREAAELLVEAGYSLFALGASATTSIFDAELPQRSAFVLGGETEGVG 192 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV 271 E T + MPG +++LNVS AAAV Sbjct: 193 EAVAELVTEWLSIPMPGDVESLNVSAAAAV 222 >gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 267 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 119/263 (45%), Gaps = 36/263 (13%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--------SRKIFQLLATKNALARLD 82 K++++ +K ++ Q F+ G+ V AL S K+ + K L +L+ Sbjct: 13 KEIKALKEK-KYRDQTGLFFIEGIRFVEEALKEKIEISKILVSDKLADVHGGKEILEQLE 71 Query: 83 WDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132 ++N + + + T PQ I I+ K+++ +L++V N Sbjct: 72 -NSNCCNVYTLTNKLYMEVTDTENPQGILAILNKKSI--------------SLESVYDNK 116 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VLD + DP N+G I+R+A A G+I +K + + +S G+L HIP Sbjct: 117 NFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKVLRSTMGSLFHIPICYS 176 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ L++M + G + S SK E + K D IA+I+G E G+ + + Sbjct: 177 ENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYK-DNIAIIVGNEANGISDSVAGISNEL 235 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G ++LN S AA + +Y Sbjct: 236 VRIPMAGKSESLNASVAAGLLMY 258 >gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba] gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba] Length = 227 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 8/225 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG V LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVVMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ ++ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGILARVELPIAISLKEIKKAQKLLVLCSITDVGNIGGIFRSAYCLGMDGVILDFAK 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ +S+ G + +P+ + N D + ++ + GF +G + P ++ + K Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSP-KEYLALKK 178 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223 >gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] Length = 255 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 31/281 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ KI + K AK R+ Y + G H V A Sbjct: 1 MEVIQSKQNPKIKAWKKLATAKGRQKAGQY-------------------LIEGTHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALE 117 L + + + L+AT LD+D + LP + + + K + + QG+ + Sbjct: 42 LKS-GQPVRHLVAT------LDYDLSQLPDQALSLPLLLVSPELLKDLSETPTPQGI-MA 93 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L S LD + Q ++LD V DP N+G ++R+A A + DG+I K + + Sbjct: 94 IIDLPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVL 153 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAE 236 +++ G+L H+ + + L +A + G + + + QE+ N K+AL+LG E Sbjct: 154 RASQGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNE 213 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G+G+ + A ++ MPG ++LNV+ A + ++ Q Sbjct: 214 GQGVSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254 >gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] Length = 289 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 7/190 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + K+ G + L L + + VL++V +P N+GAI Sbjct: 95 PVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNVGAIF 154 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSWGF 207 RSA A D +I T S ++ + G + IP+ + N + ++ + GF Sbjct: 155 RSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILRELGF 214 Query: 208 QT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +T + L DS + E+ K DK+A+ILG EG GL P+T + M + +LN Sbjct: 215 KTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGVDSLN 274 Query: 265 VSNAAAVALY 274 V+ A+AVA + Sbjct: 275 VAAASAVAFW 284 >gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68] gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68] gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] Length = 254 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T+ + M GF G ++ L++ K+D A+I+G EG+G+ + ++ Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] Length = 248 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ +++ ++L ++ L ++ PV+ VP + +D+ Sbjct: 3 ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ ++ + G + S + Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237 >gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03] Length = 241 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 68/140 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD+V DP N+GA +R A D +I K +AV K + G E I ++ Sbjct: 92 LILILDNVIDPRNLGACIRCAAVAGVDAMIINKHQCAPLNAVAHKVSVGGAEVIKLFHVT 151 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+ ++ GLS + + + ALI+GAE G+R KT E + Sbjct: 152 NLINCLKFLNEKNINIYGLSEHADESYHECNFKFATALIMGAEESGIREKTLERCDHKIN 211 Query: 254 LHMPGIIKALNVSNAAAVAL 273 L + K+ NVS A + L Sbjct: 212 LSGNKLFKSFNVSVATGIIL 231 >gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 260 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N FPV + +V E QG+A A + + L A ++ D + DP Sbjct: 69 NFQCDFPVYFMEKGVFKAMVNTEN-PQGIA---AVVENRELKASNKEGFYILADKIQDPG 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA A G+I TK + +S G++ H+P I +L ++ + Sbjct: 125 NMGTIIRSAHASGALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIYDEDLK-KVELLRKS 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF+ IG S D+ K+ + +G EG GL Q+ + + MPG ++LNV Sbjct: 184 GFKLIGSSLDTDISFYSANLKGKVIIAVGNEGNGLSKTIQDISDIKVKIPMPGGAESLNV 243 Query: 266 SNAAAVALY--ITQN 278 S AA++ ++ + QN Sbjct: 244 SAAASIMMFEAVRQN 258 >gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 172 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ ++LD V P+N+GAILR+A A+ + +P A AK+A G ++ + Sbjct: 23 EVALLLDSVQTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTWTIC 82 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +++A++ + + G+ +G+ +D P+ + +K L G E +GL T + Sbjct: 83 EEVSEAIEGIRAAGYGLVGVELADQAVPINEAALPEKACLAFGHEDRGLSATTLAACDVV 142 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + G + +LNVS AA +ALY Sbjct: 143 AFIPQLGKVGSLNVSTAAGIALY 165 >gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895] gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895] Length = 397 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 122/287 (42%), Gaps = 62/287 (21%) Query: 39 KSRHTSQP---ENLF--LYGVHTVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFP 92 KSRH P + L +YG +++ AL + R+ F +LL + N ++ A L Sbjct: 102 KSRHAFDPLTPDPLLDRIYGRNSILLALQSNRREYFVRLLHSGNLDPQI---AKLAGQLG 158 Query: 93 VKTVPPQTID-KIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129 +K Q ++ AVH GL LE PL ++A+ Sbjct: 159 IKVQSAQRHQLNMMTNNAVHNGLVLEAKPLYPQEINALGAVDHEAGTFELIDQWSNNGTA 218 Query: 130 ----------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + + LD V DPHN+GAILRSA D + + R S SA ++K+ Sbjct: 219 QKVPFLQSAKKRYPVGLYLDEVVDPHNVGAILRSAYFLGADFVAVSHRNSAPLSAAVSKT 278 Query: 180 ASGALEHIPYIRISNLTDALQKM---HSWGF------QTIGLSSDSKK---PLEQE---I 224 +SGALE +P + ++ H W F Q G+SS K P+E Sbjct: 279 SSGALEVLPIYSVDKPLQFFERSRDEHDWVFVASHLTQGPGISSHVKNRVLPIEDMADLA 338 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHM-----PGIIKALNVS 266 ++ + L++G EG G+R Q+ + + P ++ +LNVS Sbjct: 339 QSSPVMLVVGNEGTGIRSNLQQRSDFFVQVPFGRADEPQLVDSLNVS 385 >gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] Length = 269 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 17/253 (6%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHP 90 +M N+ R +Q ++G+ V A+ + ++I L + L ++ NL + Sbjct: 11 EMSFRNEPKREYNQ----MVFGIRAVIEAIRS-GKEIESLFIQRGLGGELFYELKNLLNE 65 Query: 91 FPVKT--VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHV 141 + +++ VP + ++++ K HQG+ +P+ + P + L+++LD V Sbjct: 66 YKIESQQVPVEKLNRVTTKN--HQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGV 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+GAI R+A I+ + S + K+++GAL +IP R S+L ++ Sbjct: 124 TDVRNVGAIARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKF 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S G Q + + + + A+++G E G+ + A +A + M G I+ Sbjct: 184 LQSSGLQIVCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIE 243 Query: 262 ALNVSNAAAVALY 274 +LNVS + V LY Sbjct: 244 SLNVSVSTGVILY 256 >gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] Length = 296 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 15/197 (7%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H PV + + KI G + L P LS +N++ + +L++V +P N+G Sbjct: 96 HVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNVG 155 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLT----DALQ 200 AI RSA A D ++ T P+ + L + AS G + IP+ A+ Sbjct: 156 AIFRSAAALGMDAVLLT----PACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMD 211 Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +H G++T ++ D ++ E + +K+A++LG EG GL T + M Sbjct: 212 VLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMT 271 Query: 258 GIIKALNVSNAAAVALY 274 + +LNV+ A+AVA + Sbjct: 272 HGVDSLNVAAASAVAFW 288 >gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 228 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 3/163 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG LE PL ++ ++VL ++D N+G+I RSA A DGI+ Sbjct: 61 HQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKDF 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + VL +++SGA+ +P+ + N D + ++ F G +S K L+ + K A Sbjct: 121 KQEGVL-RASSGAMLGMPFCVVHNPLDVINELKQSDFTLFG-TSMQGKDLQNALSGKK-A 177 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L LG+EG GL K + M +LNV A A+ + Sbjct: 178 LFLGSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILI 220 >gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC 6260] Length = 395 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 130/321 (40%), Gaps = 67/321 (20%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K++ Y+ R + R+ + + + P ++YG H V AAL R F L Sbjct: 72 KEAEYSSQRESSRETTSYRP----TGMSRNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127 Query: 76 NALARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTL------- 126 N + + V Q+ I+ VH G+ LET PL P + Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIHELGVCD 187 Query: 127 -----------DAVRNSQ--------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + NSQ L + LD + DP N+GAI+R+A D Sbjct: 188 PEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDF 247 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ + + V AK+A+G+L+ + + S+ ++++ G+ I SS + + L+ Sbjct: 248 IVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQ 307 Query: 222 QE--IKNDKIA-----------------------LILGAEGKGLRPKTQETATSMAHLHM 256 Q+ +K+ K+ L++G+EG G+R Q + + L Sbjct: 308 QDQKLKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSK 367 Query: 257 ----PGIIKALNVSNAAAVAL 273 GI+ +LNVS A A+ + Sbjct: 368 GREDEGIVDSLNVSVACALMV 388 >gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] Length = 253 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ R+ Sbjct: 95 FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + KP+ + +++G+EGKG+ +E A + Sbjct: 155 NLRRTIEELKEKGIWVFATDASGPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G + + N S AA + + Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235 >gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N G+I+RSA GI+ R S + + K+++GA+E++ R+ Sbjct: 95 FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVV 154 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G + KP+ + +++G+EGKG+ +E A + Sbjct: 155 NLRRTIEELKEKGIWVFATDASGPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G + + N S AA + + Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235 >gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 75/148 (50%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + +++LD + DP N G I+R+A A ++ +K S + +S G++ H Sbjct: 110 EVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFH 169 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P N+T+ +Q + G++ I K QE + A+I+G E G+ +T Sbjct: 170 VPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGNEANGISDETAN 229 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A S+ + MPG ++LN S AA++ +Y Sbjct: 230 MADSLVKIPMPGKAESLNASVAASIMIY 257 >gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] Length = 276 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 38/274 (13%) Query: 24 RRNHR----DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 RRN R +YK + K ++ QP+ + ++G+ +V + L + + Sbjct: 4 RRNPRVNRPNYKP-RPGGSKPQYQPQPDEM-VFGIQSV-----------IETLKSDQQID 50 Query: 80 RLDWDANLPHP----------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPT 125 +L + L +P ++ VP + +D+ K HQG+ A + LS Sbjct: 51 KLYMEKGLSNPDIQNLAFQKRVTIQRVPVERLDRFTRKN--HQGVVCLIAQVQYVKLSNV 108 Query: 126 L-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + D ++ ++LD + D N GAI R+A I+ R + + ++ K++SG Sbjct: 109 IADVFERGEVPFFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSG 168 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGL 240 AL HI R +LT+ ++ + G + + S + L + + +A+I+G+E G+ Sbjct: 169 ALNHISVCREPDLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGI 228 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ + + + G + +LNVS A V LY Sbjct: 229 SPELLRMVDTHVKIPLLGAVGSLNVSVATGVILY 262 >gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12] gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12] gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] Length = 254 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T+ + M GF G ++ L++ K+D A+I+G EG+G+ + ++ Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 290 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V D + DP N G I+R+ + G+I K ++A G LE +P + Sbjct: 138 LIVVFDQIQDPGNAGTIIRTLYSLGGAGVIIPKHNGVFLGQDARRAAVGCLERLPISKAI 197 Query: 194 NLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL+ A++ + GF G S DSK E E+K + LILG+E G+R + ++ ++ Sbjct: 198 NLSRAIETANEKGFHIYGTSIEKDSKNVFEAELKFPAL-LILGSEKSGIRLQLKKRCHTI 256 Query: 252 AHLHMPGIIKALNVSNAAAVALYI---TQNHFA 281 H+ M + +LNV+ A + + QN+F Sbjct: 257 LHIPMVRDVNSLNVAQAGGIIISCFARCQNNFT 289 >gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 15/185 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL------LSPTLDAVRNSQLLMVLDHVND 143 PV V P +++ G VH+G +++ PL LSP VR + V + + D Sbjct: 78 PVYAVTPALAERVTGYH-VHRGALASMQRKPLPDAGALLSPGTGDVRR---VAVFEDIVD 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA R+A A D ++ T R + K + G++ H+P+ R+++ + L + Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLR 193 Query: 204 SWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 GF T L SD L++ + + +K+AL+ G EG GL P+ A + + M + Sbjct: 194 QAGFTTAALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRIPMDAGV 253 Query: 261 KALNV 265 +LNV Sbjct: 254 DSLNV 258 >gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 380 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + ++ L+ V +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 231 TDCVLALEDVGNPHNLGGIMRSCAHFGVKGVLVND-ASQLESGAAVRTAEGGAEHVKAIS 289 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L DAL + + G+ + SS L Q K ++LG EG GL + Sbjct: 290 AEGLVDALAQFRAAGYTIVTTSSHKGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVK 349 Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQNH 279 + G +++LN+S A + A + Q+H Sbjct: 350 VSIDGTGNVESLNISVATGILLAEWWRQHH 379 >gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] Length = 244 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVK-------TVPPQT 100 +YG H V ++LL + + W NL + F +K V Sbjct: 5 LIYGKHVV-----------YELLKKHKNMVKEIWVKNLKLLNEFDLKNTKIKINVVSENK 53 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154 +D+++ HQG+ E D + N L++VLD ++DP+N GAI+RS Sbjct: 54 LDQLLKTNEPHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSC 113 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212 + DGII + ++ + K++SG+ I + +NL +A++ + + GF L Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNL 173 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAA 270 + +S + + N K +I+G E KG+ T S ++++P I + N S A + Sbjct: 174 NQNSTDMTKTQFAN-KTVVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACS 230 Query: 271 VALYITQNHFAK 282 + + N+ K Sbjct: 231 IICFWIANYLNK 242 >gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 270 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 17/272 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LAT 74 K+S + R Y++ +SF +K L +YG + V AL +PS +I +L L+ Sbjct: 4 KNSTHNAQRTTLVSYEEKKSFYEKV--------LTIYGRNPVLEALEDPSLQIHRLHLSE 55 Query: 75 KNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 N ++ LD L ++T + + +I QG+AL+ T DA N Sbjct: 56 SNKPSKQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLN 115 Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 L+ LD V +P N+G I+RS A DGI+ + K +P S + K+++G L I Sbjct: 116 EHKRFRLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKI 175 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P IR +L L+ G + L S + + + ILG E +G+ P+ Sbjct: 176 PIIRADSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAAL 235 Query: 248 ATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + + M +++LNV+ A+ +A + +N Sbjct: 236 SDERIAIPMNRGVESLNVAVTASLLAFCLPEN 267 >gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] Length = 170 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 129 VRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++N QL ++++D V DP N+G I+R+A AFS D II K + + +S Sbjct: 12 IKNKQLDISKYSRVLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQ 71 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240 G+ HI ++ D + KM + L D + LEQ + +K+A+I G EG G+ Sbjct: 72 GSNFHIDCFDNIDILDVIPKMEDFDLYATSLKGD--RYLEQIDSVGEKVAVIFGNEGSGV 129 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ++ ++M G ++LNV+ AA + ++ Sbjct: 130 SEEILDKVNNLLKINMTGQAESLNVAVAAGIVMH 163 >gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 272 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 13/244 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 RDY + + R E LF+ G + A + LL++K A D Sbjct: 16 RDYTGLTDVELRRRREPA-EGLFIAEGEKVIRRAKDAGYAMRSMLLSSKWVDAMRDVIDE 74 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVND 143 LP P V V P+ +++ G VH+G AL + P DA ++ + +++ VND Sbjct: 75 LPAP--VYAVSPELAERVTGYH-VHRG-ALASM-QRKPEPDAAELLAGARRVAIMEAVND 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAI RSA A D ++ + + K + GA+ +PY R+ L+ + Sbjct: 130 HTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDGWPKGLEGVR 189 Query: 204 SWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 GF + L+ K E+ + D++AL+LGAEG+GL + A + M + Sbjct: 190 EAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALMAADEWVRIPMAHGV 249 Query: 261 KALN 264 +LN Sbjct: 250 DSLN 253 >gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893] gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893] Length = 565 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 128/318 (40%), Gaps = 97/318 (30%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84 S P + F+YG V+AA+ RK+ L ++++ L W+ Sbjct: 223 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRLGEPKWEQPEIRSIAKYASLAG 282 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135 A + H P KT T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 283 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLGFQTVVSKSNSHFLAQ 337 Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160 ++LD + DP N+GAI RSA F D Sbjct: 338 LAPQPEEQAAVNGTDGHIQFDSRRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 397 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211 I+ + + S S V+ K+A+GA E IP + + +++ + + + W F T+ Sbjct: 398 AIVFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQTNGWKFFAADAPDATLA 457 Query: 212 LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 K P L E+ L+LG EG GL+ K + A + +PG Sbjct: 458 NDYTRKIPVTKSLDSLSSELTKAPCVLMLGGEGSGLQQKIKNRADMF--VTIPGAYSDNI 515 Query: 260 ------IKALNVSNAAAV 271 + +LNVS A+A+ Sbjct: 516 RDDTAGVSSLNVSVASAL 533 >gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC 6260] Length = 395 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 129/321 (40%), Gaps = 67/321 (20%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K++ Y+ R + R+ + + + P ++YG H V AAL R F L Sbjct: 72 KEAEYSSQRESSRETTSYRP----TGMSRNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127 Query: 76 NALARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTL------- 126 N + + V Q+ I+ VH G+ LET PL P + Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIHELGVCD 187 Query: 127 -----------DAVRNSQ--------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + NSQ L + LD + DP N+GAI+R+A D Sbjct: 188 PEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDF 247 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ + + V AK+A+G+L+ + + S+ ++++ G+ I SS + + L+ Sbjct: 248 IVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQ 307 Query: 222 QE------------------------IKNDK-IALILGAEGKGLRPKTQETATSMAHLHM 256 Q+ I N+ + L++G+EG G+R Q + + L Sbjct: 308 QDQKSKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSK 367 Query: 257 ----PGIIKALNVSNAAAVAL 273 GI+ +LNVS A A+ + Sbjct: 368 GREDEGIVDSLNVSVACALMV 388 >gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 257 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 16/201 (7%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVR-----NSQLLM 136 A LP+ TV + +D+I ++ HQG + + LS + + N ++ Sbjct: 53 AYLPNSVKFTTVSARELDRI-AQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVL 111 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195 +LD + DP N+G +LR+A ++ + R + + V+ K ++GA+ HI R++NL Sbjct: 112 ILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLK 171 Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252 D L+K W T + ++ + + + + ++A+I+G EG+G++ E A +A Sbjct: 172 HGIDFLKKNEYWILAT---DEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVA 228 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 + + G + +LNV A + L Sbjct: 229 RIPLYGAVTSLNVVVACGITL 249 >gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320] gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 10/160 (6%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +PT D V + L+ V +PHN+GAI+RS F G+I+ S ES ++A G Sbjct: 214 APTKDCV------LALEDVGNPHNVGAIMRSCAHFGVKGVISPD-SSVLESGAAVRTAEG 266 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLR 241 E+I I N L++ G+ + SS PL + +K+ LILG E GL Sbjct: 267 GAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSHKGSVPLAKAQLPEKMVLILGQEKDGLS 326 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 T + ++ G I++LNVS A+ V L + Q+H Sbjct: 327 DSTLKQGDMSIYIGGTGHIESLNVSVASGVLLAEWWRQHH 366 >gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 201 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASG-AL 184 A R L +VL++++DPHN+ AILRS AF G+ TK PS LA S+SG A Sbjct: 19 ARRQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPS----LANSSSGSAK 74 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + I R +Q + G Q +G S + +P+ A+ILG E +G+ P Sbjct: 75 KWIDLTRHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGNEHRGMDPD 134 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ M G++++LNVS AAA LY Sbjct: 135 VKIHVPDEIYIPMFGMVQSLNVSVAAATILY 165 >gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] Length = 245 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 9/185 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A +++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELC-ETQTPQGIVAEVAKESQSLPESLSGKYLL--LEDVQDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210 +A A DG+ + + + + +S G+ H+P R I + + QK GF + Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPIFEMIETCQKQ---GFPIL 178 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + +K +D AL++G EG+G+ E+A + H++MPG ++LNV+ AA Sbjct: 179 ATTLSTVSVDYRAVKTDDNFALVMGNEGQGISQDMAESANQLVHINMPGRAESLNVAVAA 238 Query: 270 AVALY 274 + ++ Sbjct: 239 GILMF 243 >gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] Length = 242 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 30 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 88 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 89 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 148 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 149 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 208 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 209 ERLET-ARIPMSKTFDSLNVATASGIAL 235 >gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L++ LD V DP N G + R+ A GII K + + + K+++GAL +P R Sbjct: 103 KLVLALDQVQDPGNAGTLARTLYALGGGGIIMPKHNASALGSAAVKASAGALARLPVARA 162 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATSM 251 +NL+ AL+ GF D + D A L+LG E KG+RP + T+ Sbjct: 163 TNLSRALETAADQGFSIYAARFDDGSVNAFTARLDTPAVLVLGNEDKGVRPGVAKRCTAS 222 Query: 252 AHLHMPGIIKALNVSNAAAV 271 H+ M +LNV+ A A+ Sbjct: 223 IHIPMQREFDSLNVAQAGAM 242 >gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7] gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7] Length = 238 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 6/145 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP NIG ++R+A+AFS D +I + + L +S GA H+ I NL Sbjct: 99 LLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNL 157 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T + ++ G IG + ++ K + Q + K+A ++G EG G+ P+ + ++ Sbjct: 158 TQLISQLQEKGVVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIP 217 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 + I++LNV+ A ++ +Y HF Sbjct: 218 I-NTIESLNVAIAGSIMMY----HF 237 >gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 271 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 10/194 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ VP + +D I G VH+G+ +T P L L + L+ VL +++ N+ Sbjct: 78 PIYCVPQKVMDDIAGFH-VHRGMLGIGERKTLPSLQDFLQNLPEKTLVPVLCGISNHDNM 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A AF+ GII K + + GA IPY + +++ ++ ++ F Sbjct: 137 GAIFRNAAAFASHGIIVDKTSCDPLYRKAIRVSVGAALKIPYTQGADIDSIIEALNDADF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LS + + L++ + A+ILGAEG GL + + ++ + M +LNV+ Sbjct: 197 HLYALSPSAPRYLKEAKSTKRTAIILGAEGDGLPAHILQKSETL-RIPMAYGFDSLNVAT 255 Query: 268 AAAVALYITQNHFA 281 A+ +AL HFA Sbjct: 256 ASGIAL----AHFA 265 >gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 228 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 16 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 75 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 195 ERLET-ARIPMSKTFDSLNVATASGIAL 221 >gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638] gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638] Length = 365 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GA++RS F G++ + + ES ++A G EH+ I Sbjct: 218 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAAIVESGAAIRTAEGGAEHVQPITGE 276 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ DA+++ G+ + SS + PL Q K+ L+LG E GL TA Sbjct: 277 SVLDAIEEFRKAGYSIVTTSSHTGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVS 336 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 337 IEGTGKVESLNVSVATGVLLAEWWRQN 363 >gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1] gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1] Length = 227 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG ++ LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVITHLLNSHKEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 244 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 22/234 (9%) Query: 68 IFQLLATKNALARLDWDANLP--HPFPVK-------TVPPQTIDKIVGKEAVHQGLALET 118 I++LL + + W NL F +K V +D+++ +HQG+ + Sbjct: 12 IYELLKKHKNMVKEIWVKNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNELHQGIIAQI 71 Query: 119 APLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 D + N L++VLD ++DP+N GAI+RS + DGII + Sbjct: 72 KDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQV 131 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIA 230 ++ + K++SG+ I + +NL +A++ + + GF L+ +S + + N K Sbjct: 132 NSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTKTQFAN-KSV 190 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQNHFAK 282 +I+G E KG+ T S ++++P I + N S A ++ + N+ K Sbjct: 191 VIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] Length = 128 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 63/113 (55%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ + Sbjct: 6 IIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIY 65 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 66 QAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 118 >gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD V DP N+G I+R+AV+F D ++ + + + +S GAL HIP IR + Sbjct: 102 VIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIR-GD 160 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L + G + + S + L + D AL+ G EGKG+ + A + + Sbjct: 161 VQAMLMSLKQKGNRILATSLHNASALREIAVPDAFALVFGNEGKGVSEEVLRLADTHVFI 220 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + +Y Sbjct: 221 EMH-TFESLNVAVAAGICMY 239 >gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] Length = 247 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S KI+ + A L + A PV VP + +++ Sbjct: 6 LIYGIHALNESLASHSDIDKIYMKKGAVTGELLEIKRTAR-TQGVPVMEVPAERLNRF-- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L P L +++LD V D N GAI R+ Sbjct: 63 TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 + +++G+E KG+ + T + G I +LNVS A + LY + + Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242 Query: 279 HFA 281 H A Sbjct: 243 HNA 245 >gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] Length = 288 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 26/202 (12%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG-LA-------LETAPLLSPTLDAVRNSQLLMVLD 139 P P PV P + I G E VH+G LA L+ A LLS ++ ++V + Sbjct: 86 PAP-PVYLAGPAVLAAITGFE-VHRGALASMCRREPLDPAHLLS-------TARRVLVCE 136 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + N+GAI RSA D ++ + R + + + G + +PY R+ AL Sbjct: 137 DLVSHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAAL 196 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI------KNDKIALILGAEGKGLRPKTQETATSMAH 253 + + GF+ + L+ P QE+ +D++A++LG EG GL + TAT A Sbjct: 197 SLLRTAGFEVVALT---PAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRAR 253 Query: 254 LHMPGIIKALNVSNAAAVALYI 275 + M + +LNV+ AA+A Y+ Sbjct: 254 IPMAHGVDSLNVAATAAIACYV 275 >gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 272 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 7/180 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P +++ G VH+G +++ PL + + ++ ++V++ VND NI Sbjct: 76 PAPVFAVDPALAERVTGYH-VHRGALASMQRKPL-PDAAELLGTARRVVVMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ L+ + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGF 193 Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + L+ D K E + +++AL+LGAEG GL K A + M + +LN Sbjct: 194 RLLALTPDEKATSIDEAAPHRLERVALMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253 >gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 266 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 6/161 (3%) Query: 110 VHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +H+G+ +++ PL +PT + + +++ +++L++V DP N+GAI RS D ++ T++ Sbjct: 93 LHRGVIASMQRPPLPTPT-ELLTDARRIVILENVVDPTNVGAIFRSVAGIGADAVLVTEQ 151 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 S + + G + +P+ RI N D + + GFQ L+ D L + Sbjct: 152 CSDPFYRRAIRVSMGTVLQVPWTRIGNWADTRVLLTASGFQIAALALEDGAVSLRDYAAD 211 Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +K+AL+LG EG GL + + A ++ + M I +LNV Sbjct: 212 APEKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLNV 252 >gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24] gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24] gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24] Length = 272 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 7/180 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P +++ G VH+G +++ PL + ++ ++V++ VND NI Sbjct: 76 PAPVYVVDPALAERVTGYH-VHRGALASMQRKPL-DTAAGLLTTARRVVVMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D I+ + + K + GA+ +PY R+ L + GF Sbjct: 134 GAIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPAGLAAVGEAGF 193 Query: 208 QTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D + +PL+ + D++AL+LGAEG GL + + + + M + +LN Sbjct: 194 TLLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWVRIPMSHGVDSLN 253 >gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 269 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N++ + VL+ + D N+GAI RSA A D ++ + R + + G + +P+ Sbjct: 117 NARRVAVLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWA 176 Query: 191 RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQET 247 R+ + L + GF + L+ D+ E +N DK+AL+LG EG G+ P+T Sbjct: 177 RLESWPGDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSA 236 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 237 VDLAVRIPMRAGVDSLNVAAASAVAFW 263 >gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] Length = 238 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 6/145 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP NIG ++R+A+AFS D +I + + L +S GA H+ I NL Sbjct: 99 LLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNL 157 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T + ++ G IG + ++ K + Q + K+A ++G EG G+ P+ + ++ Sbjct: 158 TQLISQLQEKGVVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIP 217 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 + I++LNV+ A + +Y HF Sbjct: 218 I-NTIESLNVAIAGGIMMY----HF 237 >gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] Length = 226 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 14 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 72 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 73 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 132 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 133 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRFL 192 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 193 ERLET-ARIPMSKTFDSLNVATASGIAL 219 >gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15] gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15] Length = 254 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-QDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T+ + M GF G ++ L++ K+D A+I+G EG+G+ ++ Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQGILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas autotrophica DSM 16294] gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas autotrophica DSM 16294] Length = 228 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +Y + +NN +KI L K L + ++ + F +K +P + K+ K Sbjct: 1 MLIYAKQPIYYLINNYPQKIKTLYLAKE-LDKKEYSRLMKMGFEIKRIPNEAAVKM-SKN 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A HQG E N ++VL + D NIGAI+RSA A D II + Sbjct: 59 ANHQGFLAEVEDYKLHDYQTFLNKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSGIK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + +L ++++GAL +P +N+ + L GF + G E +I + Sbjct: 119 HLNIEPLL-RTSTGALFDMPLAVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR 177 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+LG EG+GL + ++ + M +LNVS A A+ + Sbjct: 178 V-LVLGNEGEGLTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILM 221 >gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] Length = 228 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 16 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 75 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 195 ERLKT-ARIPMSTTFDSLNVATASGIAL 221 >gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] Length = 247 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S KI+ + A L + A PV VP + +++ Sbjct: 6 LIYGIHALTESLASHSDIDKIYMKKGAATGELLEIKRTAR-AQGIPVMEVPAERLNRF-- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L P L +++LD V D N GAI R+ Sbjct: 63 TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLY 237 >gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162] Length = 258 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 69/141 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LLMVL+ + DP N G I+R+ G+ TK + + ++ G++ IP+ + Sbjct: 110 LLMVLEDLQDPGNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVE 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ QK+ + G + K ++E + A ++G EGKGL + + A + Sbjct: 170 DVVLLKQKLQNCGIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A + +Y Sbjct: 230 IPMCGHVESLNAAMAGGILMY 250 >gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] Length = 262 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 32/210 (15%) Query: 91 FPVKTVPPQTIDKIVGKEAV----HQGLALETAPLLSPTLDAV--------------RNS 132 P K +DK+ +V H+G+ L + TL+ + Sbjct: 52 IPCKKTESGELDKLTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAER 111 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--------SAVLAKSASGAL 184 Q ++VLD V DPHNIGAILR SCD + + P S V++++++GA Sbjct: 112 QTVVVLDSVTDPHNIGAILR-----SCDQLGVSLAVLPERRGVKNVDGSEVISRASAGAS 166 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P SNL A+ ++ + GF G S P+ + LI+G+EG G+ Sbjct: 167 AWVPISIASNLVRAVGQLKAAGFWIYGADSGG-TPVTDVDFPPRTVLIMGSEGSGISRLL 225 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + G + +LNVS AA + LY Sbjct: 226 AEQCDRIVSIPTCGKLDSLNVSVAAGILLY 255 >gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 279 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 3/143 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + D N+GA RSA A D ++ T R + + + G + +P+ RI D Sbjct: 136 LEDLVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPD 195 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHL 254 + + GF T L+ S+ PL++ + + +++AL+LGAEG GL+P+T + Sbjct: 196 GIATLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVRI 255 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 M G + +LNV+ AAAVA + T+ Sbjct: 256 PMAGGVDSLNVAAAAAVAFWATR 278 >gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] Length = 216 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 4/167 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG+ + +++ + S+ L+++LD + DPHN+GAI+R++V +GII K Sbjct: 39 HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPHNLGAIVRTSVGAGANGIIIPKD 98 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K ++G + ++NL ++++ G S + P+ +E Sbjct: 99 KSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKERGVWVYA-SDVNGTPIYEEDFTL 157 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G EG+G+R +E + + M I +LNVS + + L+ Sbjct: 158 PTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNVSVSVGIVLF 204 >gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 293 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 3/180 (1%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H P+ ++K+ G LA P L + VR++ ++++++ + D N+G Sbjct: 97 HDVPIYVGSEADLEKVAGFRLHRGALASTQRPHLPSVAEVVRDTSVVVIIEDLVDHTNVG 156 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RS A D ++ T R + + + G + +P+ RI +++ GF Sbjct: 157 AIFRSVAALGADAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPESIDTFQDAGFV 216 Query: 209 TIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ + L++ + D K+AL+ G+EG GL T++ + M G + +LNV Sbjct: 217 VAGMTLGEGAITLDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNV 276 >gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502] gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502] Length = 254 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + +A ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSSADQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 259 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 14/214 (6%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128 L T++AL + + LP + V DK+ HQG+ +P TL+ Sbjct: 51 LFCTESALEKCPELSELPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 104 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V+ + L+ V DP N+G +LRSA AF DG++ + + + +++ GA IP Sbjct: 105 VKTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246 I + +A+ + G + + +PL + D + +++G+EG+GL +T Sbjct: 165 VIEAGKMPEAIALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIA 224 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++LN A ++ L+ HF Sbjct: 225 ACTGTVRIPMTDRVESLNAGIAGSILLW----HF 254 >gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 263 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 APLL+ + L++VLD V DP N+G I+RSA A + DG+I + + Sbjct: 105 VAPLLA------KERSLVVVLDGVQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVL 158 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ G+L H+P + ++L + L + G + G S + + L+ G+EG Sbjct: 159 RATMGSLFHLPVVH-ADLAEVLPQAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEG 217 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL P +E + M G ++LNV+ AA+V LY Sbjct: 218 GGLSPAVRELMDDGLLIPMRGQAESLNVAMAASVLLY 254 >gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 233 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 16/201 (7%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVR-----NSQLLM 136 A LP+ TV + +D+I ++ HQG + + LS + + N ++ Sbjct: 29 AYLPNSVKFTTVSARELDRI-AQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVL 87 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195 +LD + DP N+G +LR+A ++ + R + + V+ K ++GA+ HI R++NL Sbjct: 88 ILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLK 147 Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252 D L+K W T + ++ + + + + ++A+I+G EG+G++ E A +A Sbjct: 148 HGIDFLKKNEYWILAT---DEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVA 204 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 + + G + +LNV A + L Sbjct: 205 RIPLYGAVTSLNVVVACGITL 225 >gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] Length = 292 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV P+ + ++ G +H+G A+ PL S + R+++ + V++++ D N+G Sbjct: 82 IPVYVASPEQLRQLTGYR-LHRGALSAMRRWPLPS-VEETCRDARRVAVMENIVDHTNVG 139 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKM 202 A++RSA A D ++ T A+ + G + IP+ RI L+++ Sbjct: 140 ALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRGLEEL 199 Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATS 250 S GF T+ ++ SD L++ + K+ALI G EG GL T A Sbjct: 200 RSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIGKLALIFGTEGDGLSRHTIAGADL 259 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 260 TVKIPMSHGVDSLNVAASSAVAFYAT 285 >gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 111 HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ +P+ + + + +VLD V +P N+GAI R+ +F GI+ Sbjct: 64 HQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEPQNLGAIARTVESFGGVGILLP 123 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 ++ S + + K++SGAL H+ R+ +L ++L F+ +G S + + ++I+ Sbjct: 124 EKNSAPINEIALKASSGALFHLMVSRVPSLNESLIT-----FKKLGGSIYAVETGGKDIR 178 Query: 226 N----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N + LILG+EGKG+ + + + + G +LNVS AA +A++ Sbjct: 179 NINFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231 >gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] Length = 263 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD++ DP N+G ++R+A GI+ + + +S G++ +P R + Sbjct: 115 ILVLDNLQDPGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKD 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 LT+A+++M G T D ++ A +G EG GLR + A + + Sbjct: 175 LTEAVRRMKESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRI 234 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + AAAV ++ Sbjct: 235 PMEGEVESLNAATAAAVLMF 254 >gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58] gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58] Length = 232 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-- 127 +L +N L+ + D A+ P PV +D IVG +H+G+ + L+ Sbjct: 17 ILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDDGLEQM 75 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A+ S L++V +++ N+GA+ R+A AF D ++ + + + G++ Sbjct: 76 TAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVL 135 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY R + L+++ GF GLS D K + +++++AL++G EG+GL P++ Sbjct: 136 SVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALVIGTEGEGL-PQSV 194 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + + +LN A+ +ALY Sbjct: 195 LSRFQTARIAQSPQVDSLNAGTASGLALY 223 >gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis] Length = 364 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 32/272 (11%) Query: 31 KKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDW 83 +K Q QK++ S+ ++ ++G+ AL+ RK F+L A + ++ ++ Sbjct: 90 EKWQQLRQKTKVDSRSDSHEIVFGIAPCLLALSQGRRKAFKLFVKDGEAAERASVLKVCE 149 Query: 84 DANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPL--LSPTLDAVRNSQ------L 134 +A+ + V +DK+ +G+ VHQG+ L+ + L L+ T R S+ L Sbjct: 150 EAH-SRGVQICHVRKNDLDKMSLGR--VHQGVCLQASRLDFLTKTTCNSRGSKDSNRPPL 206 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ + DP N+GAILRSA D + ++ S S V++K++SG +E + + Sbjct: 207 WLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLSPVVSKASSGVMEVMEVYGYES 266 Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQET 247 L D L+ + G+Q +G + ++++ I+ L++G EG+GL Sbjct: 267 LEDMLRMKVAQGWQVVGSVGTEAEATHIPIIRCSDFHLTKPTLLLMGGEGEGLSRGLLSL 326 Query: 248 ATSMAHL-----HMPGIIKALNVSNAAAVALY 274 ++ + PG I++LNVS AA + L+ Sbjct: 327 CQALLSIPAGRNLFPG-IESLNVSVAAGIILH 357 >gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO] Length = 295 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 75/290 (25%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK-- 103 ++YG ++V AAL NPSR N +RL + +P V + +DK Sbjct: 9 YVYGTNSVYAALLNPSR---------NCHSRLLYHGTIPSKILQXVDEMKVTTELVDKHR 59 Query: 104 --IVGKEAVHQGLALETAPL-----------------LS-----------------PTLD 127 ++ VH +ALET PL LS T Sbjct: 60 LNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKT 119 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L + LD + DPHNIGAI+RSA D I+ ++R + V++K++SGALE + Sbjct: 120 DAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELL 179 Query: 188 PYIRISNLTDAL---QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALIL 233 P + + Q+M W F T L++ + + L + L++ Sbjct: 180 PIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVV 239 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 G E +G+R + + + G I+ +LNVS A A+ + Sbjct: 240 GNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289 >gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis M163/99/10] gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] Length = 265 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 127/274 (46%), Gaps = 14/274 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 EG+GL + E + A + M +LNV+ A+ Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATAS 265 >gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 274 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 11/192 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + ++ G + L P L +D +N++ + VL++V +P NIGAI Sbjct: 80 PVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGAIF 139 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWGF 207 RSA A D ++ T S + + G + IP+ + T+ ++ + + GF Sbjct: 140 RSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAMGF 199 Query: 208 QTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +T + S D P + +K+A++LG EG GL +T + M + + Sbjct: 200 KTAAMALREDSFDIDDP--HLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA + Sbjct: 258 LNVAAASAVAFW 269 >gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] Length = 531 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------------------ 127 PV++V T+D K HQG+ L+ +PL +D Sbjct: 303 PVRSVNKGTLDSF-SKGRPHQGIILDASPLTLLNIDFLEKFDINERVNKRMNGGGGGGGG 361 Query: 128 ----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + N + L +VLD + DP N+GAI+R+ F+ DG++ + + S + +KS+S Sbjct: 362 GGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSS 421 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---KKPLE--QEIKNDK-IALILGA 235 GA E R ++ L+ G+ +G S D +P +IK D+ LILG Sbjct: 422 GACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGN 481 Query: 236 EGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274 EG GL+P E + I +LNVS + + ++ Sbjct: 482 EGFGLKPSVLEICNKTIKIVGGNYKIDSLNVSVTSGILIH 521 >gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] Length = 244 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 3/149 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D V ++++ LD V DP N+G ILRSA +F D ++ +K + S + +S GAL Sbjct: 95 MDFVMGEKVIL-LDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQGALF 153 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ IR ++L+ + ++ IG + ++ + D++AL+ G EG G+ + Sbjct: 154 HMQVIR-TDLSQIIDQLKEKKIPVIGTALENASAMSTIEAVDRVALLFGNEGNGVSKELL 212 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M ++LNV+ AA +A+Y Sbjct: 213 AKCDETMYIEMHA-FESLNVAVAAGIAMY 240 >gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] Length = 247 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-----AKSA 180 LD + ++LL+ LD + DP N+G ++R+A++F DG+ Y +E+ L +S Sbjct: 96 LDITKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGV-----YCSTETCDLYNDKAIRST 149 Query: 181 SGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 GAL HIP +R S L ALQ S G + I S + + + +A ++G EG+ Sbjct: 150 QGALFHIPVVRKDFSTLIPALQ---SQGVKVIATSLQESTTMGEIPVTECMAFVMGNEGQ 206 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ A + M G ++LNV+ A + +Y Sbjct: 207 GVHQDIIAQADFRVRIEMEG-FESLNVAVAGGIIMY 241 >gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 203 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 6/192 (3%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDHV 141 LP PV +VP +D + G VH+G LA+ ++ P L L A+ L++VL + Sbjct: 7 QLPLGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGI 65 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++ N+G+I R+A AF D ++ + + + GA +PY + D Sbjct: 66 SNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAA 125 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF + L+ + + + + ++ AL+LG EG+GL + E + A + M Sbjct: 126 LAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLLERLET-ARIPMSKTFD 184 Query: 262 ALNVSNAAAVAL 273 +LNV+ A+ +AL Sbjct: 185 SLNVATASGIAL 196 >gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 6/174 (3%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +DKI G + LA P SP ++N + L+VL+ +NDP N+G ++RSA+AF + Sbjct: 83 LDKISGMQHSPGVLAEVKMPSPSP----LKNIRSLLVLNQINDPGNLGTLIRSALAFGWE 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI + + +SA GA +PY R +L + L+++ + T ++ S P+ Sbjct: 139 GIFIVNQSCDIFNEKAIRSARGATFRLPY-RKGDLQE-LEEILTHNKLTTWVADVSGTPM 196 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +K+AL+L E +G+ T + + M G +++LNV+ A A+ L+ Sbjct: 197 QDITPPEKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNVAVAGAILLH 250 >gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 294 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 15/197 (7%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H PV + + KI G + L P L +N++ + +L++V +P N+G Sbjct: 96 HVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKNARRVAILENVVNPTNVG 155 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLT----DALQ 200 AI RSA A D ++ T P+ + L + AS G + IP+ A+ Sbjct: 156 AIFRSAAALGMDAVLLT----PACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMD 211 Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +H G++T ++ D ++ E + +K+A++LG EG GL T + M Sbjct: 212 VLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMT 271 Query: 258 GIIKALNVSNAAAVALY 274 + +LNV+ A+AVA + Sbjct: 272 HGVDSLNVAAASAVAFW 288 >gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum gryphiswaldense MSR-1] Length = 248 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 15/195 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPH 145 P + VP + + K+ G +H G+ P +AV++ + L++LD + +PH Sbjct: 52 PFRHVPTEELTKVAGTP-LHGGIVAVCQPKGLTPFEAVKSFNWAKAKEPLVILDGIGNPH 110 Query: 146 NIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 N+GAI R+ F +I + ++ PS++A + A G LE + +++NL AL ++ Sbjct: 111 NLGAIARTMAFFGLGRLIVSDHPEQALPSDAAF--RIAEGGLEWVDVYQVANLGKALPRL 168 Query: 203 HSWGFQTIGLSSDSKKPLEQEI-KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII 260 +Q IG + + + ++ NDK +AL+LG E +GL T + + G + Sbjct: 169 KPH-YQVIGTALGAHRSMKDTFSSNDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRV 227 Query: 261 KALNVSNAAAVALYI 275 ++LNVS AA+ +++ Sbjct: 228 QSLNVSATAAILIHL 242 >gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464] Length = 227 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + K Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] Length = 242 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD V DP N+G ILRSA+AF I+ + + +S GA+ H+ +R + Sbjct: 98 VLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR-DD 156 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ G + I S + ++ DK+A ++G EG G+R +T A S A L Sbjct: 157 LHHVIPELQKLGVRVIATSLHNASSIDDIKSTDKMAFVMGNEGNGVRDET--IAMSDASL 214 Query: 255 HMP-GIIKALNVSNAAAVALY 274 ++P +++LNV AA + +Y Sbjct: 215 YIPIDTMESLNVGVAAGIVMY 235 >gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268] gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268] Length = 260 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++L+++ DP N+G + R+A A + I ++ S + +S G+L +P+ Sbjct: 107 LFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEE 166 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + + S G Q L D KK Q A + G EG GL + + AT Sbjct: 167 DLFFLCESLKSAGVQVFALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLL 226 Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 + M G I++LNV+ +A++ LY + Q + K Sbjct: 227 IPMEGKIESLNVATSASIVLYEAVRQRRYIK 257 >gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] Length = 308 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 15/192 (7%) Query: 99 QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +T+ ++ G + +H+GL A AP LS + + ++ + ++VL+ V D NIG+I R+A Sbjct: 111 ETLAQVAGYD-MHRGLLAAANRAPELSLS-EVIKTATTVVVLEGVGDHENIGSIFRNAAG 168 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGL 212 D I+ + + + G + +P+ +N L ++ GFQ + L Sbjct: 169 LGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEGKHTNWHYGLDQLKESGFQLVSL 228 Query: 213 SS-DSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + PL+Q + + +KIAL++GAEG GL +T A + M +LNV Sbjct: 229 TPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLNV 288 Query: 266 SNAAAVALYITQ 277 + AAA+ALY Q Sbjct: 289 ATAAAIALYERQ 300 >gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 255 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S K ++I LKD R HR+ +K+ + G H + A N+ Sbjct: 7 VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + I LL T AL L + +P+ V + KI Q A+ + P + Sbjct: 45 --QIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D N +++LD + DP N+G ++RSA +F+ +I + + + +S G Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239 L + + L + ++H + IG S D KPL + +K +DK ALI+G EGKG Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ + ++ M + ++N + A ++ +Y N Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + R + + VL+ + DP N+G+ILR+A G+I KR + + + K + GA Sbjct: 93 TAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHGVIIPKRRACGVTPAVVKVSEGAA 152 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 ++ R++N+ L+ + G +G D +P + +AL++G E KGL Sbjct: 153 GYVNVARVTNIASTLECLKEKGLWVVGADMDG-EPYHRVDLTGPVALVIGGEDKGLGRLV 211 Query: 245 QETATSMAHLHMPGIIKALN 264 +E + L M G + +LN Sbjct: 212 REKCDLLVKLPMRGHVPSLN 231 >gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 273 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147 PV T + ++ G + +G+ A+ PL P L+ + + ++ +++L++V +P N+ Sbjct: 78 IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204 GAI RSA A + D I+ +K S + + G + IP+ + + T D + ++ Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKE 194 Query: 205 WGFQTIGLSSDSKK-PLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G++ + ++ ++ ++ E + DK+A+ILG EG GL +T + + M + Sbjct: 195 LGYKNVAMALTARSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+AVA + Sbjct: 255 SLNVAAASAVAFW 267 >gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 260 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 18/251 (7%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF-PV 93 FN K ++ + E L L+G + V L NN K L + L +L + + + Sbjct: 9 FNNKHQNKHKKERLCLFGYNAVYEGLINNLKIKKVYLHKEDHLLLKLIKQKGIEYELHTI 68 Query: 94 KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146 K Q D + HQG E + + ++N Q +++VLD ++DP N Sbjct: 69 KWFDNQYRDL-----SNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-W 205 G ILRS +A + G+I K S + + K++ GA ++ I ++NL+ A++ + + Sbjct: 124 FGGILRSCLAANVLGVIFKKDNQASINNTVIKTSLGACFYLNLIEVANLSYAIKDLQDKY 183 Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKAL 263 GF + + SD + + N I LI+G E KG+ + + A + M I++L Sbjct: 184 GFWSYVSNLSDQAQDYNVDYANKSI-LIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSL 242 Query: 264 NVSNAAAVALY 274 NVS A + L+ Sbjct: 243 NVSVATGIMLF 253 >gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 253 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Query: 87 LPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLL-------MVL 138 LP V + +D +V G+ HQG+ +P D + L +VL Sbjct: 54 LPSFVKVHRISGSKLDSLVPGRN--HQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVL 111 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+G ILR+A F II +R S + V+ K +SGAL + + NL + Sbjct: 112 DRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANT 171 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ + G+ + S + + + ++A+++G EG+G++ E + + + + G Sbjct: 172 LELLKENGYWIVSTSDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHG 231 Query: 259 IIKALNVSNAAAVAL 273 + +LNV+ A + L Sbjct: 232 NLSSLNVTVATGIVL 246 >gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio bacteriovorus HD100] Length = 297 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 65/124 (52%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++++LD + DPHN+GAILR++ G++ + + + + K A G +EH+P Sbjct: 139 DKSMVLILDGIEDPHNLGAILRTSWLVGAQGVLIPEDRAVGLTPTVHKVACGGVEHVPVE 198 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +N + +++ G+ GLS K+ + + DK+ +G+E KG+R T+ Sbjct: 199 ETTNFANYAEELKKQGYWIYGLSPRGKRSIFELELPDKVVWAIGSEDKGMRVTTERLCDE 258 Query: 251 MAHL 254 + + Sbjct: 259 LVFI 262 >gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 278 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 3/157 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 APL P D + +++ + VL+ VND N+G++ R+A D ++ K + + Sbjct: 117 APLELP--DVLEHTRTVAVLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVR 174 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237 + G + +P+ ++ L + GFQ I L+ + + L + + +K+AL+LGAEG Sbjct: 175 VSMGHVLRVPFAHVTKWPHDLDALRERGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEG 234 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A + M +LNV+ AAA+A Y Sbjct: 235 PGLTEHAMRATDIRARIPMAPGTDSLNVATAAAMAFY 271 >gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50] gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50] Length = 255 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S K ++I LKD R HR+ +K+ + G H + A N+ Sbjct: 7 VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + I LL T AL L + +P+ V + KI Q A+ + P + Sbjct: 45 --QIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D N +++LD + DP N+G ++RSA +F+ +I + + + +S G Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239 L + + L + ++H + IG S D KPL + +K +DK ALI+G EGKG Sbjct: 157 LFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ + ++ M + ++N + A ++ +Y N Sbjct: 215 ISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253 >gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] Length = 242 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 30 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 88 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 89 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 148 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 149 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 208 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 209 ERLET-ARIPMSKTFDSLNVATASDIAL 235 >gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] Length = 254 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] Length = 228 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 LL +N L L + LP PV +VP +D + G VH+G LA+ ++ P L Sbjct: 16 LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A+ L++VL +++ N+G+I R+A AF D ++ + + + GA Sbjct: 75 LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY + D + GF + L+ + + + + ++ AL+LG EG+GL + Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + A + M +LNV+ A+ +AL Sbjct: 195 ERLET-ARIPMSKTFDSLNVATASDIAL 221 >gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568] gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568] Length = 366 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 13/173 (7%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL +T +P D V + L+ V +PHN+GAI+RS F +G++ P Sbjct: 202 RQGLDAQTYLKEAPAKDCV------LALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DP 252 Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ES ++A G EHI I + L G+ + SS PL Q K Sbjct: 253 AVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSHKGTPLAQAKLPAK 312 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + L+LG E GL + + G +++LNVS A + L + QN Sbjct: 313 MVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLADWWRQNQ 365 >gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO] Length = 254 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 255 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S K ++I LKD R HR+ +K+ + G H + A N+ Sbjct: 7 VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + I LL T AL L + +P+ V + KI Q A+ + P + Sbjct: 45 --QIIKTLLGTSKALEILKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D N +++LD + DP N+G ++RSA +F+ +I + + + +S G Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239 L + + L + ++H + IG S D KPL + +K +DK ALI+G EGKG Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ + ++ M + ++N + A ++ +Y N Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 290 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +L+ V +P NIGAI RSA A DG+I T + ++ A G + +P+ + Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196 Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++ + +H +G++T + + D P Q + D++A+ILG+EG GLR +T Sbjct: 197 KAWRSEGIDLLHRFGYKTAAMALRHNTVDIDDP--QLAEADRLAIILGSEGPGLREETIT 254 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M + +LNV+ A+A+A + N K Sbjct: 255 QSDFTIKIPMAAGVDSLNVAAASALAFWELGNRKVK 290 >gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 214 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 17/195 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDA---VRNSQLLMVLDHVNDP 144 P + P + + KI+G +H G+ T P + P DA + + L+VLD V +P Sbjct: 18 PYRMAPTEELTKILGSP-LHGGILAVTRPKPIRVFDPA-DAHVWAKEGRPLLVLDGVGNP 75 Query: 145 HNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 HN+GAI R+ F + ++ + + SPSE+++ + + G LE + IR AL++ Sbjct: 76 HNLGAIARTMAFFGLERLLISDHPGQASPSEASL--RVSEGGLEWVEVIRAQKFVAALKR 133 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + +G + S KP+ + + IALILG E GL T + L G Sbjct: 134 LRD-SHRIVGTALGSGKPVAEVLNRPGKPIALILGNEEDGLPTATLAACDDIVTLPGSGR 192 Query: 260 IKALNVSNAAAVALY 274 +++LNV+ AA+ ++ Sbjct: 193 VQSLNVAATAAILIH 207 >gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180] gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180] Length = 227 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG V LN+ K+ ++ +K + D L F +K P I K+ K+A Sbjct: 5 IYGKQVVMHILNSHKEKLQEIYLSK------EIDKKLF--FALKKACPNII-KVDNKKAQ 55 Query: 111 -------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 56 SLARGGNHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ + N D + ++ + GF +G S E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 256 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 74/153 (48%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++ L ++LD V DP N+G I+RSA AF+ D + T + +S G++ H Sbjct: 100 DLIKEDGLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFH 159 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P + + + + G + + + ++K + + IALI G E +G+ Sbjct: 160 LPVVNDVPVDKLFEALKRNGVRVLSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDI 219 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G+ ++LNVS AA++ LY +Q Sbjct: 220 YVDGSFKIPMDGMAESLNVSVAASICLYESQRQ 252 >gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51] Length = 227 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG V LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVVMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCAITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 244 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 35/253 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100 +YG H V F+LL + + W D + + F +K V Sbjct: 5 LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKNTKIKVNVVSENK 53 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154 +D+++ + HQG+ + + + N L+++LD ++DP+N GAI+RS Sbjct: 54 LDQLLETQTQHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSC 113 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211 + DGII + ++ + K++SG+ I + +NL +A++ + + W + T Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYAT-N 172 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269 L+ +S + + N K A+I+G E KG+ T S ++++P I + N S A Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNVYVPSNKNIDSFNASVAC 229 Query: 270 AVALYITQNHFAK 282 ++ + N+ K Sbjct: 230 SIICFWIANYLNK 242 >gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 278 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 APL P D + +S+ + VL+ VND N+G++ R+A D ++ K + + Sbjct: 117 APLELP--DVLEHSRTVAVLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVR 174 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEG 237 + G + +P+ ++ L + GFQ I L+ + L + + +K+AL+LGAEG Sbjct: 175 VSMGHVLRVPFAHVTKWPHDLDALRERGFQLISLTPNPGAVTLAEAMTGEKVALLLGAEG 234 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A + M +LNV+ AAA+A Y Sbjct: 235 PGLTEHAMRATDIRARIPMAPGTDSLNVATAAAMAFY 271 >gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 88/169 (52%), Gaps = 4/169 (2%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +H+G LA P L +D +R ++ ++VL+ + D N+GAI RS D ++ + R Sbjct: 95 LHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNVGAIFRSVAGLGADAVLVSPRC 154 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IK 225 + + + G + +P+ RI +A + GF+ L+ +D L++ Sbjct: 155 ADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGFEIAALALADEAVALDEYAVAP 214 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++A++LG+EG GL + A + + M + +LNV++A+AVAL+ Sbjct: 215 PERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLNVASASAVALW 263 >gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7] Length = 227 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 VYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAISLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ N D + ++ + GF +G + P E ++ Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPRE-DL 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 ALKKCALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223 >gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 267 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++LD V DP N+G I+R+A A G+I +K + + +S G++ H Sbjct: 110 DVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFH 169 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 IP + ++ + + +M G + + S + E KN+ IA+++G E G+ + + Sbjct: 170 IPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNN-IAIVIGNEANGISEEVK 228 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + MPG ++LN S AA + +Y Sbjct: 229 NFADILVRIPMPGRAESLNASVAAGILMY 257 >gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] Length = 248 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + + +L+ V RNS LL+VL ++DPHN+GAI+R+A A + D ++ Sbjct: 72 HQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAADAVVVV 131 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +A + K+A+GAL H+ ++ +L L+ +H Q D+++ Sbjct: 132 EGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERNYTDVDM 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LG EG GL P+ + ++ L M G +++LNVS A V LY Sbjct: 192 RQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLY 240 >gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] Length = 267 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++LD V DP N+G I+R+A A G+I +K + + +S G++ H Sbjct: 110 DVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFH 169 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 IP + ++ + + +M G + + S + E KN+ IA+++G E G+ + + Sbjct: 170 IPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNN-IAIVIGNEANGISEEVK 228 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + MPG ++LN S AA + +Y Sbjct: 229 NFADILVRIPMPGRAESLNASVAAGILMY 257 >gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57] Length = 227 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVIMHILNSYQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 273 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + ++ + G VH+G A+ PL S P L + ++ ++VL+ + D N+G Sbjct: 78 PVYLADERVLEGVAGFP-VHRGALAAMARTPLPSVPEL--IAAARRVLVLEDLVDHGNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R A A D ++ + R + K + GA+ IPY R+ + L + + GF+ Sbjct: 135 AIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGFR 194 Query: 209 TIGLSSD-SKKPLEQEI--KNDKIALILGAEGKGLRPK-----TQETATSMAHLHMPGII 260 + L+ D S P+++ + +++AL+LG+EG GL + + M+ M + Sbjct: 195 LLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGV 254 Query: 261 KALNVSNAAAVALY 274 +LNV AA++A Y Sbjct: 255 DSLNVVAAASIACY 268 >gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] Length = 367 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL ET +P D V + L++V +PHN+G I+RS F +G++ P Sbjct: 203 RQGLDAETYLQTAPAKDCV------LALENVGNPHNLGGIMRSCAHFGINGMMVQ---DP 253 Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ES ++A G EH+ I N + L+ G+ + SS L + K Sbjct: 254 AQLESGAAVRTAEGGAEHVKAISADNFLEVLETFRKAGYTIVTTSSHKGTALGKAQLPAK 313 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + L+LG E GL + + G +++LNVS A+ + L + QN Sbjct: 314 MVLVLGEESDGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAEWWRQNQ 366 >gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908] gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018] gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017] Length = 227 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 10/226 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG ++ LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 VYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I R Sbjct: 61 GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAR 120 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 E V +S+ G + +P+ + N D + ++ + GF +G S E + Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K + + M +LNVS AA + + Sbjct: 178 KCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223 >gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 129 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 61/113 (53%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 2 VIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELY 61 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 62 QQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 114 >gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 23/257 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WD 84 +D KK++ + + + + G H + AL R I Q+ +N L +L Sbjct: 7 KDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGRSIKQIFVEENKLTKLTEMIGS 65 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L V V + + + E+ QGL E + +D ++ ++L++V DP Sbjct: 66 EKLLTDLSVNLVSKEVLKSLADSES-PQGLIAEVTKI-EEVIDF--SAAKFLLLENVQDP 121 Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 N+G ++R+A A +I T YSP + +S G+ H+P +R++ D Sbjct: 122 GNVGTMIRTADAAGFSAVILLGETADIYSPK----VMRSMQGSNFHLPLVRMAK-EDCFA 176 Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++ G T LS++S + +I N+ ALI+G EG G+ + + A + H+ MP Sbjct: 177 QLKKAGISILTTTLSANS---VSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMP 233 Query: 258 GIIKALNVSNAAAVALY 274 G ++LNV+ AA + ++ Sbjct: 234 GQAESLNVAVAAGILMF 250 >gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] Length = 260 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128 L T+NAL + A LP + V DK+ HQG+ +P TL+ Sbjct: 52 LFYTENALEKCPELAALPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR + L+ V DP N+G +LRSA AF DG+I ++ + + +++ GA IP Sbjct: 106 VRPGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIP 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246 I + A+ + G + + +PL + +++G+EG+GL +T Sbjct: 166 VIETGAMPQAITLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIA 225 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + M +++LN A ++ L+ HF Sbjct: 226 ACNSTVRIPMTDRVESLNAGIAGSILLW----HF 255 >gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans] gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans] Length = 393 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 49/219 (22%) Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ------------------------------ 133 I+ AVH + LET PL P + V + Sbjct: 170 ILTNYAVHNNVVLETKPLQLPEISQVGSCDPEGSTFAYDELFFDEASERRTSFIQKENKK 229 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + LD V+DPHN+GAI+RSA D +I ++R S ++K++SGA E +P Sbjct: 230 FPLGLYLDEVSDPHNMGAIIRSAYFLGVDFMIMSRRNCAPLSPTVSKTSSGATELLPIFT 289 Query: 192 ISNLTDALQKMH--SWGFQTIGLSSDSK----KPLEQE-----IKNDKIALILGAEGKGL 240 + D K W F + G+S +K K +E + +K + L++G EG+G+ Sbjct: 290 VDKPLDFFSKSQKEGWTFVSAGVSKQNKFAKNKKIEAQDLHGMLKELPVILVVGNEGEGV 349 Query: 241 RPKTQETATSMAHL----HMPGI--IKALNVSNAAAVAL 273 R Q + + + G + +LNVS A A+ L Sbjct: 350 RTNLQMRSDFLVEIPQGRGAAGTRSVDSLNVSVATAILL 388 >gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 260 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128 L T+NAL + A LP + V DK+ HQG+ +P TL+ Sbjct: 52 LFYTENALEKCPELAALPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR + L+ V DP N+G +LRSA AF DG+I ++ + + +++ GA IP Sbjct: 106 VRPGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIP 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246 I + A+ + G + + +PL + +++G+EG+GL +T Sbjct: 166 VIETGAMPQAIALLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIA 225 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + M +++LN A ++ L+ HF Sbjct: 226 ACNSTVRIPMTDRVESLNAGIAGSILLW----HF 255 >gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12] gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12] Length = 227 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG + LN+ K+ ++ +K + + F +K P I K+ K+A Sbjct: 5 VYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNII-KVDNKKAQ 55 Query: 111 -------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 56 SLARGGNHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703] gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] Length = 349 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 7/163 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 +GL ++T +P D V + L+ V +PHN+G I+RS F +G++ + S Sbjct: 185 RRGLDVQTYLPHAPEKDCV------LALEDVGNPHNLGGIVRSCAHFGVNGVLV-RDASQ 237 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ES ++A G EH+ I+ NL DAL + G+ + SS L + Sbjct: 238 LESGAAVRTAEGGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSHKGTALYDTQLPARTV 297 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++LG E GL + ++ G +++LN+S A + L Sbjct: 298 IVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILL 340 >gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] Length = 364 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 100/244 (40%), Gaps = 15/244 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102 E +YG + A N I + ++ R L W A + V V + + Sbjct: 123 EETRIYGENACQAMFKNRPDAIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDDEELS 180 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K G E H G+ + DA + ++ L+ V +PHN+G I+RS F Sbjct: 181 KASGTEH-HGGVCFIIKKRGGMSADAYLQQAAGNDCVLALEDVGNPHNLGGIMRSCAHFG 239 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSK 217 G+I + ES ++A G EHI I LTD L K G+ + SS Sbjct: 240 IKGVI-LQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRKAGYTIVTTSSHKGS 298 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YI 275 + L + K+ L+LG E GL T + ++ G +++LNVS A + L + Sbjct: 299 QDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLAQWW 358 Query: 276 TQNH 279 QN Sbjct: 359 QQNQ 362 >gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52] Length = 227 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG ++ LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVITHLLNSHKEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RS+ DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + Sbjct: 117 DFTKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K + + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223 >gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75] Length = 227 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG V LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ + N D + ++ + GF +G S E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQAEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 258 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 69/141 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+MVL+ + DP N G ILR+ G+ TK + + +S G++ +P++ + Sbjct: 110 LVMVLEDLQDPGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVE 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ +K+ G ++ + +QE A +G EGKGL + E A + Sbjct: 170 DVVSLEKKLKEKGIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A+ + +Y Sbjct: 230 IPMCGKVESLNAAMASGILMY 250 >gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus TB-2] gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus TB-2] Length = 221 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 14/186 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 F +K + + K+ K + HQG +E P D + + +++LD+V D NIG Sbjct: 40 FEIKFIDNKLAQKL-SKNSNHQGFFAKIEFTP---QNWDIIGDK--ILILDNVTDMGNIG 93 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A A D +I T ++ +++SGA + I I N+ D + + + G+ Sbjct: 94 AITRTAYALGIDLLIITGINELKWDRII-RTSSGAALDMKIISIKNILDVINILKTKGYL 152 Query: 209 TIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G K KP + +KIALILG EG+GL K ++ + + M +LNVS Sbjct: 153 IVGADLGGKCKPS----RKNKIALILGNEGEGLNKKIKQKLDEVITIEMKREFDSLNVSV 208 Query: 268 AAAVAL 273 AA + + Sbjct: 209 AAGILI 214 >gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 339 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 GL +ET +P D V + L++V +PHN+GAI+RS F G+I + + E Sbjct: 176 GLDVETYLQQAPAKDCV------LALENVGNPHNLGAIMRSCAHFGVQGVI-LQDVAMLE 228 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231 S ++A G EHI I T L + G+ + SS L + +K+ L Sbjct: 229 SGAAVRTAEGGAEHIKGIDADGFTTTLNQFRCAGYTIVTTSSHKGSTTLAKADLPEKMVL 288 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +LG E GL E + G I++LNVS A + L Sbjct: 289 VLGQESDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIML 330 >gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] Length = 267 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 29/252 (11%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH------PFPVKTVPP--QTI 101 +YG+ AL RKI+ + ++ L + ++ H + +P + + Sbjct: 9 IIYGIAPCQLALKADRRKIYHIY-VRDPAGTLKPNKSIEHIIFKARKLGIHVLPSDKRYL 67 Query: 102 DKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 DK+ HQG+A++ PL L T A L + L+ V DP N+GA++R+ Sbjct: 68 DKLTEGRP-HQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLGALIRT 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A + ++ R + SAV++K+++GA+E P + NL+ L + + IG Sbjct: 127 AALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNIIGTV 186 Query: 214 SDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETATSMAHL----HMPGIIKA 262 + Q + L+LG EG G+ +E S + P I + Sbjct: 187 GHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDIDS 246 Query: 263 LNVSNAAAVALY 274 LNVS AA + LY Sbjct: 247 LNVSVAAGILLY 258 >gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 138 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 61/113 (53%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 11 VIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELY 70 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 71 QQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 123 >gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 268 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 6/186 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P+L + R+++ ++V+D V D NIGAI Sbjct: 79 PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L K+ GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKL---GFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 ++ +D ++ I ++A+++G EG+GL KT A + + M + +LNV+ A Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATA 255 Query: 269 AAVALY 274 AAVA + Sbjct: 256 AAVAFW 261 >gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 265 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 A+ P PT+ + L++ LD V DP N+G I+R+A F D ++ ++ + + Sbjct: 97 FAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYN 156 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +S +G+L +P+ R + + L + G+ + S + + E DK +++ Sbjct: 157 PKVVRSCAGSLFALPHYRCNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVI 216 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAV 271 G E G+ Q +A + + G +++LN S AAA+ Sbjct: 217 GNEANGVSQAVQASADMLVRIPHAGSKPAVESLNASIAAAI 257 >gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX] gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX] Length = 275 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 30/253 (11%) Query: 41 RHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT---- 95 R Q E FL G V AL+ P + +L AT A+ R H ++T Sbjct: 23 RAFRQRERRFLAEGPQAVREALDLPD-VVHELYATAEAMQR--------HTALIRTAEQA 73 Query: 96 -VPPQ--TIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +P T+D + + + QGL L + L AV +L++VL HV DP N G + Sbjct: 74 GIPVHRVTLDVMGELAQTVTPQGL-LAVCSFVDVPLSAVDRPRLVVVLSHVRDPGNAGTV 132 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWGF 207 LRSA A D +I T + ++++G+L H+P +RI +T L+ G Sbjct: 133 LRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLPVVVGVRIEEVTGFLRDA---GL 189 Query: 208 QTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + K+ L++ + +A I G E GL +T A + + G ++L Sbjct: 190 TLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQETLALADETVSVPIYGRAESL 249 Query: 264 NVSNAAAVALYIT 276 N++ AAAV LY T Sbjct: 250 NLATAAAVCLYAT 262 >gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii DSM 22836] Length = 246 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 23/217 (10%) Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-------LALE 117 S+++F LL +++ V+ VP + +D+ K HQG + E Sbjct: 37 SKELFALLKSRD--------------IAVQRVPNERLDRFTRKN--HQGVIAFLSAITYE 80 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + P L ++VLD + D N GAI R+ D I+ + S + +A Sbjct: 81 HIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAGVDAIVIPAKGSVTVNADAI 140 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GAL IP + +LT+A+Q + + G + + + + IA ++GAE Sbjct: 141 KTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGADDYTAVDYSGPIAFVMGAED 200 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ A ++ + G I +LNVS AA V +Y Sbjct: 201 TGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIY 237 >gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933] gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933] Length = 223 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 81 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 139 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 140 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 199 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 200 PMKGNAESLNVGVAAGIVLY----HFS 222 >gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] Length = 279 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 68/130 (52%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD++ DP N+G I R+A A GI+ + + + +S GA+ +P+ + + Sbjct: 132 VIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAVFRMPFFYVKD 191 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L A++ + S G +T + K ++E + A ++G EG GLR + E A + + Sbjct: 192 LPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDEVSECADCLIRI 251 Query: 255 HMPGIIKALN 264 M G ++LN Sbjct: 252 PMCGKAESLN 261 >gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] Length = 196 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 4/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186 A R + L +V+++++DPHN+ AILRS AF + Y+ + L K +SG A + Sbjct: 18 AKRQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKW 75 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R + + GF + S S++ +PL++ K+A+ILG E +G+ + Sbjct: 76 VETTRHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGNEHRGVDEELA 135 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M G++++LNVS AAAV LY Sbjct: 136 PYVDGALYIPMQGMVQSLNVSVAAAVILY 164 >gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] Length = 286 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A + D ++ T + + G + +P+ R+ Sbjct: 136 VLEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDV 195 Query: 197 -----DALQKMHSWGFQT--IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248 L+++H+ GF+T + LS DS + + +K+AL+ G EG GL P+T T Sbjct: 196 HDWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATC 255 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 256 DYTVRIPMSHGVDSLNVAAASAVAFW 281 >gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 268 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 1/149 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +++++ ++VL+ VND N+G++ R+A D ++ K + + + G + Sbjct: 113 DVLKDAKTVVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLR 172 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ ++ L ++ GFQ I L+ + + L + + +K+AL+LGAEG GL Sbjct: 173 VPFAHVAKWPHDLDELRGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAM 232 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+A Y Sbjct: 233 RATDIRAKIPMAPGTDSLNVATAAAMAFY 261 >gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01] gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01] Length = 623 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + DP N+GAI+RSA F D +I + R S SAV K+++GA E+IP + +N Sbjct: 419 LFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNP 478 Query: 196 TDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T ++ H+ W F QT+ ++ S++ + ++ L+LG+E Sbjct: 479 TLFVKSSHTNGWKFFAAEAPAAANASQQTLEAPTEQVLSRREVSTKLNEAPCVLMLGSEE 538 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL ++ A + +PG I A NV + A V Sbjct: 539 QGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 570 >gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 246 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 7/201 (3%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 N D+ + H V V P+ + ++ + QG+ E A P D L Sbjct: 48 NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKT-PQGIIAEVAMPSLPLADLKAGRYL- 105 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 VL+ V DP N+G ++R+A A DG++ +++ + + +S G+ H+P R +++ Sbjct: 106 -VLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR-TDV 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 +A QK+ + I ++ SK+ ++ + N AL++G EG G+ + A +AH Sbjct: 164 YEACQKLQNLDVPLIA-TTLSKESVDYKTVEHNGDFALVMGNEGNGISELMTKQADILAH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A + L+ Sbjct: 223 IIMPGQAESLNVAVATGIVLF 243 >gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] Length = 250 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 15/193 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQ--LLMVLDHV 141 P+ V +D++ G E HQG+ E + +LS DA + L++LD + Sbjct: 51 PLDFVKRSRLDEMSGGEN-HQGVMAYLAAYRYYEISDMLS---DAREKGEDPFLILLDGI 106 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAI+R+A G++ KR + +A AK+++GAL + +++NL+ +++ Sbjct: 107 EDPHNLGAIIRTANLAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEE 166 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + + + Q + IAL++G EG+G+ +E+ A + M G I Sbjct: 167 LKKEGIWFLCADMEGESMYRQRLTG-PIALVIGNEGEGVSRLVRESCDMRASIPMKGEID 225 Query: 262 ALNVSNAAAVALY 274 +LN S A V Y Sbjct: 226 SLNASVACGVLAY 238 >gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 25/203 (12%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ T + + K+ G + L A++ PLL+ D +++L++V +P N+GAI Sbjct: 84 PIFTAEFEVLTKLTGFKLTRGMLCAMKRKPLLNYQ-DMCAGKDRIVILENVMNPTNVGAI 142 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLTD--------- 197 RSA A + D + T P S L + AS G + IP+ I + + Sbjct: 143 FRSAAALNMDAVFLT----PGCSDPLYRRASRVSMGTVFQIPWTFIQDNNEMRCQREILW 198 Query: 198 ---ALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSM 251 A+ ++ G++T + L+ DS E+ + +K+A+ILG EG+GL +T E Sbjct: 199 PRQAITELREMGYKTAALALTDDSVGIDNPELMQEEKLAIILGTEGEGLMDRTIEMCDYT 258 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 259 VKIPMSHDVDSLNVAAASAVAFW 281 >gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] Length = 394 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +S L ++ L+ V++PHN+GAI+RS F G++ S ES ++A Sbjct: 236 VSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 294 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G EH+ I + ++ L+ G+ + SS PL Q +K+ L+LG E +GL Sbjct: 295 GGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAQLPEKMVLVLGQEREGLS 354 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQN 278 + + G +++LNVS A V A + QN Sbjct: 355 DTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393 >gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] Length = 255 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 11/236 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQL-LATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103 L +YG + V AL++P+ +L AT N A R+ A+ V+ +T+ + Sbjct: 14 LTIYGRNAVFEALSDPTIACLRLHWATSNQKSPATKRI-LQASEARGIDVREHTRKTLSR 72 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFS 158 I QG+AL+ + D +++S ++ LD + +P N+G I+RSAVA Sbjct: 73 ISRNGKQDQGVALDITCEKFSSFDELKDSLSTSSLRILALDGITNPQNVGMIIRSAVAGG 132 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ K+ + ++ K+++G + P I +L AL+++ G L +S Sbjct: 133 IDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDSLAPALEQLQIGGAAIATLEGNSAT 192 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + +LG E G+ + A H+ M +++LNV+ AA++ Y Sbjct: 193 SLFTYRPAKSVVYVLGGESDGVSSQVSNLADIKLHIPMGSGVESLNVAVAASLVAY 248 >gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 281 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 1/149 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +++++ ++VL+ VND N+G++ R+A D ++ K + + + G + Sbjct: 126 DVLKDAKTVVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLR 185 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ ++ L ++ GFQ I L+ + + L + + +K+AL+LGAEG GL Sbjct: 186 VPFAHVAKWPHDLDELRGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAM 245 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+A Y Sbjct: 246 RATDIRAKIPMAPGTDSLNVATAAAMAFY 274 >gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 256 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 15/168 (8%) Query: 122 LSPTLDAVRNSQLL-----MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L LD V+ L ++L+++ DP N+G I+R+ AF I + + S+ + Sbjct: 90 LCNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGVDFYNSK---V 146 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALIL 233 ++ GA+ P +++ NL+ L K+H F +IG LS + K + I+N+ K A+I Sbjct: 147 ISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIF 206 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279 G E G+ ++ +++P ++LN++NA A+ LY TQN+ Sbjct: 207 GNESSGISAALEKIIQK--QIYIPIAFESLNIANATAILLYEFSTQNY 252 >gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 261 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 74/139 (53%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 M++D V DP N+G I+R+A A G+I TK + ++ G++ IP I + Sbjct: 116 MLVDKVQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDN 175 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++++ GF+ I S D++ N+K+ + +G EG G+ K + + + + Sbjct: 176 FSKIKELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIP 235 Query: 256 MPGIIKALNVSNAAAVALY 274 MPG +++LNV AAA+ ++ Sbjct: 236 MPGNVESLNVGVAAAIMMF 254 >gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF] gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF] Length = 254 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + + ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSSTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 269 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 4/159 (2%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +H+G LA P L + V +++ ++V++ V D N+GA+ RSA A D ++ T R Sbjct: 96 LHRGTLASMQRPELKSVEEVVADARRVLVIEDVVDHTNVGAVFRSAAALGMDAVLVTPRC 155 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN- 226 + + + G + +P+ RI + + GF L+ SD L++ N Sbjct: 156 ADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINLLRDSGFTVAALALSDDAVGLDELAANP 215 Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +++AL+LG EG GL +T E A + + M G + +LN Sbjct: 216 PERLALVLGTEGDGLSRRTVEGADVVVKIPMAGGVDSLN 254 >gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] Length = 232 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGAL 184 ++A+ + +++ LD V DP N+G ++R+A A S G++ + + A++A+GAL Sbjct: 72 VEALEDRLVVLALDGVQDPGNVGTLVRTAAALSDAVGVLVGPGSADPFNPKAARAAAGAL 131 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E +P + LT AL+++ G + IGL + PL E + + L++GAEG GL Sbjct: 132 ERVPIAEVDELTPALRELRVRGARVIGLDPRAPSPLAPETQ--RRVLVVGAEGAGLSAAV 189 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A L +P +++LN + A A+AL+++ A Sbjct: 190 DGELDERAALVVPPRLESLNAAVAGALALWVSLGGGA 226 >gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] Length = 256 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 15/168 (8%) Query: 122 LSPTLDAVRNSQLL-----MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L LD V+ L ++L+++ DP N+G I+R+ AF I + + S+ + Sbjct: 90 LCNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGVDFYNSK---V 146 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALIL 233 ++ GA+ P +++ NL+ L K+H F +IG LS + K + I+N+ K A+I Sbjct: 147 ISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIF 206 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279 G E G+ ++ +++P ++LN++NA A+ LY TQN+ Sbjct: 207 GNESSGISAALEKIIQK--QIYIPIAFESLNIANATAILLYEFSTQNY 252 >gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 244 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148 VP + ++K+ + HQG +P+ + + N + L ++LD ++D N G Sbjct: 54 VPIEKLNKLT--QLNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFG 111 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A G+I K+ + V K+++GA +P ++ ++ DA+ + G Q Sbjct: 112 AIIRTAECTGAHGVIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQ 171 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + L + A+++G E G+ P + A L + G I +LNVS A Sbjct: 172 VVAATEKTDNTLYDVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVA 231 Query: 269 AAVALY 274 LY Sbjct: 232 CGAFLY 237 >gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20] gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20] Length = 227 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L ++ + + +L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A DG+I E + +++SGA + +++ L ++ GF+ Sbjct: 100 IVRTAYALGVDGLIFIGERLAMEGVI--RTSSGAALDLEIALNNDIFTVLNELKQVGFKL 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +S K+ ++ K ALILG+EG GL K + + M +LNVS A Sbjct: 158 FASASGGKQIHHYKVDKGKKALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 277 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 9/210 (4%) Query: 71 LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 LL T LA L D A PF + + ++VG +++G+ + PT+ Sbjct: 64 LLGTDRRLAELAGDLAGRAVPF--YRTSAEVMAQVVGFH-LNRGVLAAARRVPEPTVAGL 120 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V ++ + VL+ VND N+G+I R+A D ++ + + + G +P Sbjct: 121 VEGARTVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVP 180 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKT 244 Y R ++ L+ + GF+ + ++ DS E ++++IA+++GAEG GL P T Sbjct: 181 YARATDWPAELKMLKQKGFRVLAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPAT 240 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M +LNV+ AAA+A Y Sbjct: 241 LRLSDARVRIPMSRGTDSLNVATAAALAFY 270 >gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34] gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34] Length = 246 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAVRNS 132 N D+ + H V V P+ + ++ + + LA+ + PL L A R Sbjct: 48 NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKTPQGIIAELAMPSLPL--ADLKAGR-- 103 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL+ V DP N+G ++R+A A DG++ +++ + + +S G+ H+P R Sbjct: 104 --YLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR- 160 Query: 193 SNLTDALQKMHSWGFQTIG--LSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ +A QK+ + I LS +S K +E N AL++G EG G+ + A Sbjct: 161 TDVYEACQKLQNLDVPLIATTLSKESVDYKTIEH---NGDFALVMGNEGNGISELMTKQA 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +AH+ MPG ++LNV+ A + L+ Sbjct: 218 DILAHIIMPGQAESLNVAVATGIVLF 243 >gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51] gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 8/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + G + L P L +A + + VL+ + D N+GAI Sbjct: 79 IPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGAI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMHSW 205 RSA A D ++ T + + G + +P+ RI + + ++ + Sbjct: 139 FRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRKL 198 Query: 206 GFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T+ ++ +D+ ++ Q + +K+A++LG+EG GL P T A + M + + Sbjct: 199 GFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVDS 258 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA + Sbjct: 259 LNVAAASAVAFW 270 >gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591] gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] Length = 397 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + ++ L+ V +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 248 TDCVLALEDVGNPHNLGGIMRSCAHFGVKGVLVND-ASQLESGAAVRTAEGGAEHVKAIS 306 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L DAL + + G+ + SS L + K ++LG EG GL + Sbjct: 307 AEGLVDALAQFRAAGYTIVTTSSHKGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVK 366 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + Q+H Sbjct: 367 VSIDGTGNVESLNISVATGILLAEWWRQHH 396 >gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023] Length = 252 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W L Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + I ++ QG+ + P + + +LL+V D V DP N+ Sbjct: 65 KGDYDVFEISSE-ISHLISDTMTEQGV-FAVVAISEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ + + + + +S G+ HIP I+ ++L + + + G Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWVGNLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K + +AL++G EG G+ + Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] Length = 196 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188 R + L +V+++++DPHN+ AILRS AF + Y+ + L K +SG A + + Sbjct: 20 RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77 Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR + + G+ + L S++ +PL+ K+A+ILG E +G+ Sbjct: 78 TIRHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDEDLAPH 137 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 ++ M G++++LNVS AAAV LY Q H A Sbjct: 138 VDGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAA 173 >gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 240 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V + Q ++LD V DP N+G ++R+A+AF D +I ++ + + ++ GAL + Sbjct: 93 VEDGQRYLLLDRVQDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALFQMN 152 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + NL DA+ + G G +E DK+A ++G EG+G+ + E Sbjct: 153 -VCVMNLKDAIVFLKHQGVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELC 211 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFAK 282 L++P +++LNV A+A+ +Y HF K Sbjct: 212 QH--RLYIPIQTVESLNVGIASAITMY----HFQK 240 >gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] Length = 270 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 4/240 (1%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-V 96 + ++ Q E GV A + R I ++ T+ AL R D L + + Sbjct: 21 KSAKFRRQEEAFLAEGVRLCRDAAYSGVR-ILRMFYTEEALERYPKDVELLREKAERAFL 79 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 Q + + QG+ A L + LD + S L+ L+ + DP N+G +LR+A Sbjct: 80 LSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDIQDPSNLGTVLRTAE 139 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I T+ S + + + GA+ +P + + A+ + GF T+ D Sbjct: 140 ALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNALEQKGFVTMAAVPD 199 Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +P+ Q + + +++G EG GL+P+T + M G ++LN S AA++ ++ Sbjct: 200 REAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRAESLNASVAASLLMW 259 >gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia] Length = 261 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 39/260 (15%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------------NALAR---LDWD 84 SR +SQ +LYG++ V +AL R QL + N L R L D Sbjct: 8 SRFSSQKSYDYLYGINPVMSALYANKRSFTQLYVNQTQQNDYINPRVSNILNRAQSLKLD 67 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V+ +P +++ + HQ + L+ + L + + + ++LD V DP Sbjct: 68 --------VQMIPKNKLERYCSNDH-HQNVILKCSKL--NYCNQLPDESNFVLLDSVQDP 116 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-QKMH 203 N GAILR + +I K+ S ++K+++GALE + NL + + Q+ H Sbjct: 117 QNFGAILRVCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANFVKQRKH 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMA------H 253 FQ IG +S E + D K +I G+E G+R + + ++ H Sbjct: 177 E--FQVIGSGFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNIMTSRH 234 Query: 254 LHMPGIIKALNVSNAAAVAL 273 ++ +LNVS +A + L Sbjct: 235 TFPETLVDSLNVSVSAGIIL 254 >gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A] Length = 227 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 10/226 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG LA PL P L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGVLAKVELPLALP-LKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFA 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + Sbjct: 120 KELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLK 177 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 178 KCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7] Length = 274 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + ++ G L + L D +N++ + +L+ V +P N+GAI Sbjct: 79 IPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTNVGAI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWG 206 RSA A DGI+ T S + + G + IP+ ++S A+ ++H G Sbjct: 139 FRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRLHEMG 198 Query: 207 FQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ ++ D Q + +K+A++LG EG GL T + M + +L Sbjct: 199 FKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDSL 258 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 259 NVAAASAVAFW 269 >gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 596 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S SAV+ K+++GA E+IP + +N Sbjct: 393 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 452 Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T+ L+ +M+ W QT G S++ S++ + ++ L+LG+E Sbjct: 453 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 512 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + +PG I + + A V Sbjct: 513 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 544 >gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 261 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 34/265 (12%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ K++ + +R L G H V AAL+ + +L+A+ L R + Sbjct: 7 RDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDA-GWPLRELVASDQGLGRAEI- 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPT-LDAVRN---------- 131 A+L +++ G A+H AL +P+ +P+ L AV + Sbjct: 65 ADL-------------LERCTGVPAIHLTDALFAHVSPVDTPSGLLAVIDLPVPPPTRAF 111 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ L+VLD V D N+G ILR+A A ++ T + + S + ++ G H +R Sbjct: 112 AESLLVLDGVQDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAGMGG--HF-CLR 168 Query: 192 ISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + D + + Q + GL + ++ E +++ +A + GAEG+GL AT Sbjct: 169 LYEHADVAVLLQGYPGQILATGLGAGARGLYEMDLRG-TVAWLFGAEGRGLSMAVAALAT 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + MPG +++LNV+ AAAV L+ Sbjct: 228 DTVVIPMPGAVESLNVAAAAAVCLF 252 >gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24] Length = 227 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 VYGKQVIMHILNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I R Sbjct: 61 GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAR 120 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 E V +S+ G + +P+ + N D + ++ + GF +G S E + Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K + + M +LNVS AA + + Sbjct: 178 KCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223 >gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] Length = 274 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 122 LSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L L+A RN+ L + LD V DP N+GA+ R+ A GII + AK+ Sbjct: 108 LDDVLEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGIILPRHEGARLGPGAAKA 167 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238 ++G L +P +++NL+ AL++ GF +G + + + + + L+LG E + Sbjct: 168 SAGTLSRLPVAKVANLSRALEEAAEAGFAVVGAAGEDGAENALAARPEFPLVLVLGNEDE 227 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+R ++ ++ + + +LNV+ A A+ L Sbjct: 228 GIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262 >gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 285 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 15/192 (7%) Query: 99 QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +T+ ++ G + +H+GL A AP L + + ++ + ++VL+ V D NIG+I R+A Sbjct: 88 ETLAQVAGYD-MHRGLLAAANRAPELGLS-EVIKTATTVVVLEGVGDHENIGSIFRNAAG 145 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGL 212 D I+ + + + G + +P+ +N L ++ GFQ + L Sbjct: 146 LGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEGKHTNWHYGLDQLKESGFQLVSL 205 Query: 213 SS-DSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + PL+Q + + +KIAL++GAEG GL +T A + M +LNV Sbjct: 206 TPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLNV 265 Query: 266 SNAAAVALYITQ 277 + AAA+ALY Q Sbjct: 266 ATAAAIALYERQ 277 >gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3] Length = 522 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S SAV+ K+++GA E+IP + +N Sbjct: 319 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 378 Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T+ L+ +M+ W QT G S++ S++ + ++ L+LG+E Sbjct: 379 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 438 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + +PG I + + A V Sbjct: 439 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 470 >gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 297 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA----SG 182 + RN++ + VL+ + D NIGAI RSA A D ++ SPS L + A G Sbjct: 137 EVCRNARRVAVLEGIVDSTNIGAIFRSAAALGMDAVL----LSPSCCDPLCRRAIRVSMG 192 Query: 183 ALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILG 234 + +P+ R+ L ++H+ GF T ++ D + P++ +K+A++LG Sbjct: 193 TVFQVPWARLGEDKTQWPEAGLARLHAMGFTTAAMALDDRALPVDDPALQAAEKLAIVLG 252 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG GL +T + + M + +LNV AAAVA + Sbjct: 253 TEGDGLAAETIARCDATVMIPMQHGVDSLNVGAAAAVAFW 292 >gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138] gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata] Length = 384 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 60/328 (18%) Query: 6 KKKSEKIFSL--KDSHYAKLR---RNHRDYKKMQSFNQKSRHTS------QPENLFLYGV 54 +KK +K SL +++H +L ++RD K K+ +T+ P + +LYGV Sbjct: 53 QKKRQKAGSLGKREAHEQRLDGICHSYRDNKNAHRQKFKNLYTNVTKFAINPLSEYLYGV 112 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAV 110 + + AAL + R F L + + + K + T DK ++ K AV Sbjct: 113 NPILAALESDRRGYFTRLLHHDTNDKDSNKLTILRLCKEKGIKIDTADKHQLNLITKSAV 172 Query: 111 HQGLALETAPLLSPTLDAVRNSQL--------------------------------LMVL 138 H + LE PL P +++++N + + L Sbjct: 173 HNNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSEKFHNNERKKYPVGIYL 232 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN+GAI+RSA D + +++ + V+AK++SGA++++P + Sbjct: 233 DEVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSGAVDYLPMFYVDKPLKF 292 Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA 248 + + G+ + S SKK + + + + I L++G E G+R ++ + Sbjct: 293 FELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGNEYSGIRTNLKQRS 352 Query: 249 ---TSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + +LNVS A + L Sbjct: 353 DFLVAIPQMTNNSTVDSLNVSVATGILL 380 >gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695] gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 227 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVIMHLLNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA G+I Sbjct: 61 GNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMGGVILDFAK 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + K Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIEN-LSLKK 178 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626] gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626] Length = 292 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 17/217 (7%) Query: 71 LLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 +L L R W D N+ P+ +PPQ ++++VG + L P + Sbjct: 67 ILQASEILERCGWHRCTQDQNV---IPLLVMPPQELERLVGYKITRGLLTAMERPQGASI 123 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + ++ + VL+++ D N+GA+ R+A A D ++ + + + + G + Sbjct: 124 TETLGKARTVAVLENLVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVF 183 Query: 186 HIPYIRISN---LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN----DKIALILGAEG 237 +P+ + + + +H GF T L+ +D+ PL +IK K AL G+EG Sbjct: 184 QVPWAHVPEELWVEGLMHMLHEEGFITTALALTDTAVPL-TDIKRTSSLGKHALFFGSEG 242 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL +T E A + M + +LNV+ ++AVA + Sbjct: 243 YGLDQRTIEACDQTAIIPMSHAVDSLNVAASSAVAFW 279 >gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 147 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 66/138 (47%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD V D N GAI R+ + D +I R S S +A K+++GAL +P R NL Sbjct: 1 MLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLR 60 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 LQ + GF+ + + + + +I+GAE G+ + + M Sbjct: 61 STLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPM 120 Query: 257 PGIIKALNVSNAAAVALY 274 G I++LNVS AA + +Y Sbjct: 121 LGTIESLNVSVAAGILIY 138 >gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 71/141 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+M+L+ + DP N G ILR+ G++ TK + + +S G++ +P++ + Sbjct: 110 LVMILEDLQDPGNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVE 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ Q++ +T K +QE A ++G EGKGL + ++A + Sbjct: 170 SVVSLAQELKDRNIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A+ + +Y Sbjct: 230 IPMCGKVESLNAAMASGILMY 250 >gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081] Length = 522 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S SAV+ K+++GA E+IP + +N Sbjct: 319 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 378 Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T+ L+ +M+ W QT G S++ S++ + ++ L+LG+E Sbjct: 379 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 438 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + +PG I + + A V Sbjct: 439 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 470 >gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 254 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 20/251 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y K + +K R S + G H + AL + ++ Q++ + +LP Sbjct: 14 YWKKLATTRKERERSG--EFIVEGFHLIEEALKH-KEQVLQIIVREGV--------DLPM 62 Query: 90 PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +P+ + + +V KE QG+ A+ P+L +A + + ++++D V DP Sbjct: 63 LWPIDGIAIVEVTSVVAKEFAETETSQGVFAICKQPVLEE--EAKTSWRKVLLIDAVQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ++R+A A D +I K + + ++A G+ HIP +R LT+ + + Sbjct: 121 GNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIPVVR-EELTECVDFLQD 179 Query: 205 WGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G G + D +I A+I+G EG G++P+ + + G ++L Sbjct: 180 QGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGIQPQLLAMTDQNIIIPILGQAESL 239 Query: 264 NVSNAAAVALY 274 NV+ A + LY Sbjct: 240 NVAVATGIVLY 250 >gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 285 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL+ V NDP N G ++R A A D ++ + +S A++++G+L H+P R Sbjct: 123 QLVSVPVETNDPGNAGTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARS 182 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 +N+ D L ++ + G Q + ++D + L+ EI A + G E GL + A Sbjct: 183 TNVKDVLGQLRAQGLQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADL 242 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ +Y Sbjct: 243 RVSIPIRGRAESLNLATAASICMY 266 >gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 223 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 13/200 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHN 146 + V +D+++ +HQG+ + D + N L++VLD ++DP+N Sbjct: 25 INVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYN 84 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI+RS + DGII + ++ + K++SG+ I + +NL +A++ + + G Sbjct: 85 FGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNG 144 Query: 207 FQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKA 262 F L+ +S + + N K +I+G E KG+ T S ++++P I + Sbjct: 145 FWIYATNLNQNSTDMTKTQFAN-KSVVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDS 201 Query: 263 LNVSNAAAVALYITQNHFAK 282 N S A ++ + N+ K Sbjct: 202 FNSSVACSIICFWIANYLNK 221 >gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 230 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 21/234 (8%) Query: 49 LFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+L G +++ A+ N +KIF + + D+++ + V+ QT++++V Sbjct: 3 LYLSGKNSIREAIENKVEIKKIF-------LINKKDYES-IYKDIIVEYTNLQTLNELV- 53 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQ + E +L+ + + +++LDH+ D N G+ILRSA AF + II Sbjct: 54 -KTNHQNIVAELKEFNYFSLENIIKDKADKVLILDHIQDSFNFGSILRSANAFGWNYIII 112 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S + V K +SG ++ I+I +L A+ + GF G D EI Sbjct: 113 PSKRSVEINDVALKVSSGGFYNVKIIKIDSLIVAINFLKEHGFWIYGSMLDENSF---EI 169 Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KN I LI+G E GL + + M G +++LN + A + L+ Sbjct: 170 KNAPINFPIGLIIGNEHSGLSKTMINSLDVKVKIMMSGTVQSLNAAVATGILLH 223 >gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] Length = 260 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VL + P N+GAILR+ DG++ R + S + +++ G++ +P +R Sbjct: 115 LLVVLHGLEKPGNVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQGSVFTVP-LRQQ 173 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + +AL + GF + + D+ + Q ++AL+LG E +GL P+ S Sbjct: 174 DEAEALAWLEEEGFTLVACTPDAPRTFWQADLTGRVALLLGTEHEGL-PEHWRRHESAVS 232 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ AAAV LY Sbjct: 233 IPMRGQADSLNVATAAAVVLY 253 >gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 262 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 68/130 (52%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD++ DP N+G I R+A A GI+ +K + + +S GA+ +P++ + + Sbjct: 114 LVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVED 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++++ G +T + ++E A ++G EG GLR + + A + + Sbjct: 174 LPEKIKELQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRI 233 Query: 255 HMPGIIKALN 264 M G ++LN Sbjct: 234 PMEGEAESLN 243 >gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] Length = 394 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +S L ++ L+ V++PHN+GAI+RS F G++ S ES ++A Sbjct: 236 VSEWLSQATTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 294 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G EH+ I + ++ L+ G+ + SS PL Q +K+ L+LG E +GL Sbjct: 295 GGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAKLPEKMVLVLGQEREGLS 354 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQN 278 + + G +++LNVS A V A + QN Sbjct: 355 DTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393 >gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C] gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C] Length = 271 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 13/244 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 RDY + + R E LF+ G + A + LL+ K D Sbjct: 16 RDYTGLTDVELRRRREPA-EGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDE 74 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVND 143 LP P V V P +++ G VH+G +++ PL PT + + +++ + V++ VND Sbjct: 75 LPAP--VYAVSPDLAERVTGYH-VHRGALASMQRKPL--PTAQELLASARRVAVMEAVND 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAI RSA A D ++ + + K + GA+ +PY R+ +L + Sbjct: 130 HTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKSLDTVR 189 Query: 204 SWGFQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 GF+ + L+ K P++ D++AL+LGAEG GL + A + M + Sbjct: 190 EAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGV 249 Query: 261 KALN 264 +LN Sbjct: 250 DSLN 253 >gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47] Length = 302 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 15/198 (7%) Query: 90 PFPVKTVPPQTIDKIVGKEAV----HQG-LALETAPLLSPTLDAVRNS---QLLMVLDHV 141 P +VP ID+ +GKE H+G LA +P + P L+ R+S L + L + Sbjct: 94 PLIPDSVPVYLIDRELGKELAGYDFHRGVLAHGFSPTIEP-LEKFRDSPQSSLALALMGL 152 Query: 142 NDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +DP N+G++LRSA A D ++ + SP V+ S + H Y R N L+ Sbjct: 153 SDPENVGSLLRSAAALGVRDILLGPQTISPMTRRVIRVSMASVFRHRFY-RFDNPVGQLR 211 Query: 201 KMHSWGFQTIG-LSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + G +I L D+ P L I++ + L++G E GL P+ E AT + L M Sbjct: 212 DLANAGIASIATLLDDTAIPLIDLSSAIQSKRRILMVGNEANGLPPEIAEAATHRSTLPM 271 Query: 257 PGIIKALNVSNAAAVALY 274 +LNV A+A+ LY Sbjct: 272 RNDTDSLNVGVASAIFLY 289 >gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 361 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 111 HQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H G+ + + PL LS LD R L+ +D V + HN+G ++R++ AF G+I K Sbjct: 188 HGGICMLVKKARPLTLSGYLDIPRKQDCLVFIDGVQNAHNLGGVIRTSAAFGVKGVIVEK 247 Query: 167 RYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEI 224 ++ + S+ A+ A G +E+I + +ALQ++ G+Q + L+S+ + KPL + Sbjct: 248 VFADNLNSSAAARVAEGGMEYIRVLETDYADNALQQLRKAGYQIVHLTSNKQAKPLAKLK 307 Query: 225 KNDKIALILGAEGK 238 K+ ++ +GK Sbjct: 308 FAQKVVFVVNEQGK 321 >gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori v225d] Length = 227 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30] Length = 227 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVLMRILNSYQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + K HQG LA PL P L V+ +Q L+VL + D NIG I RSA DGII Sbjct: 57 LAKGGNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. ND132] gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans ND132] Length = 253 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPH 145 P K+V + +D + HQG+A A L L+ + L ++ LD V D Sbjct: 59 PYKSVSAKELDYMF--RGNHQGVAARCAALDYTPLEQLLEEALQAPLPLIVALDQVQDTG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--H 203 N+G + R+ A G+I + + A +S++GAL +P ++ NL +A++ + Sbjct: 117 NVGVLARTVYALGGAGLIVCQHHGAYIGAGAVRSSAGALNKLPVAKVGNLANAMKDCVNY 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + L+ DS +++ + LILG E KG+RP + A H+ +L Sbjct: 177 DYTLYCARLAPDSDNVYTADLQTPAV-LILGNEEKGIRPGVAKFAQHSLHIPFLREFDSL 235 Query: 264 NVSNAAAV 271 NV+ A A+ Sbjct: 236 NVAQAGAI 243 >gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus subsp. fetus 82-40] Length = 226 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG E +L+ ++ L+VL ++D NIG+I+R+ A G+I + + Sbjct: 61 HQGFLAEVCEFEFASLNEIKKQDFLVVLYGLSDVGNIGSIVRTTYALGGGGVIMISKSAS 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 E + A SA A +P +S+ L ++ GF+ G + K P E + K Sbjct: 121 MEGIIRASSA--AAYELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNPSECKF-GKKTV 177 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L++G+EG+G+ K E ++M +LNVS A + Sbjct: 178 LVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGI 218 >gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 255 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 36/279 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S K ++I LKD R HR+ +K+ + G H + A N+ Sbjct: 7 VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + I LL T L L + +P+ V + KI Q A+ + P + Sbjct: 45 --QIIKTLLGTSKTLEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D N +++LD + DP N+G ++RSA +F+ +I + + + +S G Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239 L + + L + ++H + IG S D KPL + +K +DK ALI+G EGKG Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ + ++ M + ++N + A ++ +Y N Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262] gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262] gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378] Length = 252 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R + + G H V AL + +LL + +W L Sbjct: 13 KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLISSGVSVPEEW---L 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + I ++ QG+ + P + + +LL+V D V DP N+ Sbjct: 65 KGDYDVFEISSE-ISHLISDTMTEQGV-FAVVAISEPDMMLLYGKKLLLV-DAVQDPGNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ + + + + +S G+ HIP I+ ++L + + + G Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWVANLEEEGV 180 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K + +AL++G EG G+ + Q+ + ++ + G ++LNV+ Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRLSEKVYIPIYGDSESLNVA 240 Query: 267 NAAAVALY 274 AA + LY Sbjct: 241 VAAGILLY 248 >gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 269 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%) Query: 89 HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 HP PV +++I G +H+G +A P P + N+Q + VL+ + D N Sbjct: 74 HPDVPVYIGKASLLEEITGFH-LHRGAMAAMHRPAPVPLATLLANAQRIAVLEDIVDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA A D ++ + R + + G + +P+ R+ + D L ++ G Sbjct: 133 VGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPDHLAQLKEQG 192 Query: 207 FQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + +D+ L+ K K+AL+LG EG G+ +T + M + +L Sbjct: 193 FTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVKIPMRAGVDSL 252 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 253 NVAAASAVAFW 263 >gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] Length = 262 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD V DP N+GA++R+ A G++ K ++ K+++GAL +P R++ Sbjct: 104 LLVALDQVLDPGNVGALVRTVYALGGAGLLVPKHHAARLGTGALKASAGALLRLPIARVT 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL++ G+ G + + L ++LG E KG+RP + Sbjct: 164 NLARALEECAEAGYTIYGTQGEVGENLFFLEPRLPAVVVLGGEEKGMRPGVAKRCDFTLR 223 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +LNV+ A A + HFA+ Sbjct: 224 IPLQHGFDSLNVAQAGA----LITGHFAR 248 >gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus DSM 2366] Length = 254 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLP- 88 N + + N F++G+ V A+ ++I + + L L + + P Sbjct: 3 NSRRPARGKESNEFIFGIRAVIEAIK-AGKEIESIYIQRGLTGGIIMELKALLKEVDAPV 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H PV+ + T+ G AV + + + P + + L+++LD + D N+G Sbjct: 62 HNVPVEKLNRMTLKNHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRNMG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A I+ + S +A K+++GAL IP R NL + G Q Sbjct: 122 AIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECGLQ 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + + A+++GAE +G+ + A +A + M G I +LNVS + Sbjct: 182 IVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVSVS 241 Query: 269 AAVALY 274 A + LY Sbjct: 242 AGIILY 247 >gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 246 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 13/204 (6%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAVRNS 132 N D+ + H V V P+ + ++ + + LA+ + PL L A R Sbjct: 48 NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKTPQGIIAELAMPSLPL--ADLKAGR-- 103 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L+ V DP N+G ++R+A A DG++ +++ + + +S G+ H+P R Sbjct: 104 --YLILEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR- 160 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATS 250 +++ +A QK+ + I ++ SK+ ++ + N AL++G EG G+ + A Sbjct: 161 TDVYEACQKLQNLDVPLIA-TTLSKESVDYKTVEHNGDFALVMGNEGNGISELMTKQADI 219 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 +AH+ MPG ++LNV+ A + L+ Sbjct: 220 LAHIIMPGQAESLNVAVATGIVLF 243 >gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] Length = 226 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG +E + ++++ +++L +++D NIGAI+RSA A DGII + Sbjct: 61 HQGFLMEIDEFEFSSFESLKEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKSVA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + +++SGA + + ++ + ++ GF I S+ + DK Sbjct: 121 MDGVI--RASSGAALDMKIVLNDDILSMINELKQKGFY-IYASASGGSDIHTIKTKDKKV 177 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LI+G+EG G+ PK + + M +LNVS A A+ Sbjct: 178 LIMGSEGFGIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAI 218 >gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 280 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 16/198 (8%) Query: 89 HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 HP PV T P ++ + G +H+G LA P P D + ++ +++ + V D N Sbjct: 82 HPDVPVFTGPDDVLEALTGFH-LHRGALAAMDRPAPRPLADVLAGARRVLIAEDVVDHTN 140 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSW 205 +GA++RSAVA D ++ T + + + + G + +P+ R+ + ++L + + Sbjct: 141 LGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAESLPALRAA 200 Query: 206 GF---------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 GF + +GL S +PL +++AL+LG EG G+RP+T + + M Sbjct: 201 GFAVAALEVTERAVGLDSPEIEPLR---TAERLALVLGQEGPGVRPETLAQTDADVVIPM 257 Query: 257 PGIIKALNVSNAAAVALY 274 P + +LNV+ AAAVAL+ Sbjct: 258 PDGVDSLNVAAAAAVALW 275 >gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] Length = 257 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 72/140 (51%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 LM+LD++ DP N+G I+R+A GII +K + +S G++ +P++ + + Sbjct: 111 LMILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVED 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++++ + K ++E A ++G EG GLR + E A + Sbjct: 171 LENTIEEVKKQDIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKI 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + A+++ ++ Sbjct: 231 KMHGEVESLNAAIASSILMF 250 >gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1] gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1] Length = 267 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 127 DAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180 D +R Q L++++D V DP N+G I+RSA A G+I T Y+P ++ Sbjct: 108 DIIRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKT----LRAT 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P I++S++ +AL+ + S G + P+ + + +I+ EG G Sbjct: 164 MGSLFHLPVIQVSDVNEALEYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGP 223 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279 R + + MPG ++LNV+ A ++ LY I Q H Sbjct: 224 REEIFRYNHQKITIPMPGCAESLNVAIATSIILYEAIRQRH 264 >gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099] gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099] Length = 265 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHV 141 P PV V +D I G +H+G+ A AP P LDA+ + L++VL + Sbjct: 72 PADLPVYVVTSAVMDAIAGFH-MHRGILAIGRKATPQAP--GPLLDALPDQALVLVLVGI 128 Query: 142 NDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + N+G+I R+A AF D ++ T P + S AL+ IP+ ++ + Sbjct: 129 ANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSVGAALK-IPFASFTDTSGFTA 187 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + LS + + +++AL LG EG+GL P+ + M Sbjct: 188 MLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGL-PERLLARLQTVRITMSKGF 246 Query: 261 KALNVSNAAAVALYITQNHFA 281 +LNV+ A+A+AL+ HF+ Sbjct: 247 DSLNVAAASAIALH----HFS 263 >gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] Length = 273 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 12/201 (5%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V + + ++ G + +H+GL ++ + N++ L+VL+ V D NI Sbjct: 70 PIDAPVYVVTRELLAEVAGYD-MHRGLIAVADRAEETSISEMLNARTLIVLEGVGDHENI 128 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MH 203 GAI R+A DG++ + + + G + +P+ + + Q+ + Sbjct: 129 GAIFRNAAGMDVDGVLLGAGTADPLYRRSVRVSMGHVLRLPFAHLDGTSTTWQRSLDQLR 188 Query: 204 SWGFQTIGLSSDSKKP-LEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHM 256 GF+ + L+ DS+ L + + +D K+AL++G EG GL A + M Sbjct: 189 EQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEHAMRATDVRARIPM 248 Query: 257 PGIIKALNVSNAAAVALYITQ 277 +LNV+ +AA+A Y Q Sbjct: 249 AAGTDSLNVATSAAIAFYERQ 269 >gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10] gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10] Length = 227 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 10/226 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVLMRILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG LA PL P L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFA 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + Sbjct: 120 KELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLK 177 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 178 KCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109] gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109] Length = 250 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 21/168 (12%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+ P + P LD L+VLD + DP N+G +LR+A+A + + P + V Sbjct: 70 LDRLPTVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPLGTKV 123 Query: 176 LAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTI------GLSSDSKKPLE 221 L ++++GAL +P+ R IS L L+++ S+G Q + +D P Sbjct: 124 L-RASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKADPPSPYW 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 AL+LG EG GL P Q T L +++LNV++AA Sbjct: 183 DLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAA 230 >gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64] gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64] Length = 237 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 7/141 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD+V DP N+G I+R+A F D +I+ + + + ++ GAL + I+ +N Sbjct: 96 VILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYNDK---VVRATQGALFQVSLIKENN 152 Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D ++ +++ G+ + L DS K E +I +K+ LILG EG G+ + Sbjct: 153 NEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQ-- 210 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 +++P ++LNV+ A+ + L Sbjct: 211 KVYIPIEFESLNVAVASGIIL 231 >gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 22/236 (9%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 F+ G+++V AL++ + + ++ D + F + + + KI Sbjct: 29 FFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFKLIRIANKLFKKISDTV 81 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR- 167 + +A+ P+ D ++ + ++ D+V DP N+G I+R+A AF D + T Sbjct: 82 TPQKIMAIVRMPVYREE-DFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAVFTINNS 140 Query: 168 ---YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 Y+P + +++ G++ HIP I +N + L K+ G + +K + E+ Sbjct: 141 VDIYNPK----VLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFV-HEV 193 Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + DK A ILG E +G+ + + + M G ++LNVS AAA+ LY +Q Sbjct: 194 EIDKGTAFILGNEARGV--SSLDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQ 247 >gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 271 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 5/181 (2%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H PV I+++ G +H+G LA P L V +++ ++VL+ + D N+ Sbjct: 76 HDVPVFVGEHDVIERLTGFH-LHRGALASMQRPGLPEVASLVADARRIVVLEDIVDHTNV 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+ RSA A D ++ T R + + + G + +P+ RI + + S GF Sbjct: 135 GAVFRSAAALGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQSHGF 194 Query: 208 QTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ SD L+ + K+A++LGAEG GL T A + + M G + +LN Sbjct: 195 TVAALALSDDAVALDVLEAAPPTKVAVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSLN 254 Query: 265 V 265 V Sbjct: 255 V 255 >gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] Length = 254 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 254 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 26/260 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y K + +K R S + G H V AL N + ++ Q++ + +LP Sbjct: 14 YWKKLATTRKERERSG--EFLVEGFHLVEEALKNKN-QVLQIIVREGI--------DLPM 62 Query: 90 PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNS-QLLMVLDHVND 143 +P+ + + V KE QG+ A+ P+L +D V + + ++++D V D Sbjct: 63 LWPIDDIAIVEVSTAVAKEFAETETSQGVFAVCKQPVL---VDNVMTTWRKVLLIDAVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG ++R+A A D +I K + + ++A G+ HIP +R +L + + + Sbjct: 120 PGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIPVVR-GDLAEWIDILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G + D + +I+ A+I+G EG G++P+ + + G ++ Sbjct: 179 DQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAMTDQNMIIPLFGQAES 238 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A + LY FAK Sbjct: 239 LNVAVATGIVLY----GFAK 254 >gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] Length = 254 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] Length = 254 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori HPKX_438_AG0C1] Length = 227 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 16/229 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG V LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + K HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + ++ +S+ G + +P+ N D + ++ + GF +G S E + Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQAEN-L 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium] Length = 259 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 42/194 (21%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +T+ PQ I LA+ T P ++ A+ S+ + L V DP N G ILRS Sbjct: 88 ETITPQGI------------LAVCTIPQITFDSIALNGSRRFIYLSEVQDPGNAGTILRS 135 Query: 154 AVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW---- 205 A AF+ D +IT+ YSP + +S +G+L HIP SW Sbjct: 136 ADAFAMDAVITSPGSVDMYSPK----VVRSTAGSLWHIPV------------FESWRLEE 179 Query: 206 ----GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G L ++ K L Q ++ D +A + G E +GL + + + MPG Sbjct: 180 LLNLGLNAFSLGAEGSKSLSQYQMSGDTLA-VFGNEARGLSTAQNADSIDVVSIPMPGNA 238 Query: 261 KALNVSNAAAVALY 274 ++LN+S AA++ +Y Sbjct: 239 ESLNLSAAASIVMY 252 >gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83] Length = 227 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVLMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + K HQG LA PL P L V+ +Q L+VL + D NIG I RSA DGII Sbjct: 57 LAKGGNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 249 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 7/141 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD+V DP N+G I+R+A F D +I+ + + + ++ GAL + I+ +N Sbjct: 108 VILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYNDK---VVRATQGALFQVSLIKENN 164 Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D ++ +++ G+ + L DS K E +I +K+ LILG EG G+ + Sbjct: 165 NEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQ-- 222 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 +++P ++LNV+ A+ + L Sbjct: 223 KVYIPIEFESLNVAVASGIIL 243 >gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] Length = 247 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 13/240 (5%) Query: 46 PENL--FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 PE L +YG H V A+ + P K+ + + + P + VP + + Sbjct: 2 PEKLSEIVYGRHPVVDAIKSGWPVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERL 61 Query: 102 DKIVGKEAVHQGLALETAPL----LSPTLDAV-RNSQ--LLMVLDHVNDPHNIGAILRSA 154 +K+ G HQG+ +P+ L L +V N Q L+++LD + D N GAI RSA Sbjct: 62 NKLAGGN--HQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F ++ + + S +A K+++GAL IP R ++ A++ + G + Sbjct: 120 EVFGAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDL 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++G+E +G+ P A + G +LN S AA + LY Sbjct: 180 AATASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILY 239 >gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 275 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 8/191 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + ++ G E L P P + +N++ + VL+ + D N+GAI Sbjct: 80 PVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELCKNARRVAVLEGIVDSTNVGAIF 139 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206 RSA A + D ++ + + G + +P+ ++ + +HS G Sbjct: 140 RSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEKGMDILHSLG 199 Query: 207 FQTIGLS-SDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T ++ SD + EQ K K+A++LG EG GL T + + M + +L Sbjct: 200 FKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIASCDYTVKIPMSHGVDSL 259 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 260 NVAAASAVAFW 270 >gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] Length = 244 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 17/189 (8%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQL--LMVLDHVNDP 144 + +P +DK++ A HQG+A A + SP L+ V ++ L L+ LD V DP Sbjct: 52 QILPRAQLDKLI--SAHHQGIA---ARVFSPGFVDPQVLLETVADAPLPLLIALDQVQDP 106 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG + R+ + G++ K S K++SGAL ++P +++NL L++ Sbjct: 107 GNIGTLARTLYSLGGAGLVLPKNRSAPLGGGALKASSGALNYLPVAQVTNLGRFLEQATQ 166 Query: 205 WGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 I GL+ DS + + + L+LG E KG+RP + ++ + + + Sbjct: 167 AALPVIGTGLTPDSLSVYKARLSTPAV-LVLGNEHKGMRPGVAKKCETVVSIPLQRQFDS 225 Query: 263 LNVSNAAAV 271 LNV+ A A+ Sbjct: 226 LNVAQAGAI 234 >gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 296 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 16/162 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191 ++VLD + DP N+G + R+A+A + ++ +P VL +++SG++ H+P+ R Sbjct: 128 FMLVLDRIQDPGNMGNLFRTALAAGVNKVLLAGGANPLGQKVL-RASSGSVFHLPFKRFD 186 Query: 192 ------ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDK-IALILGAEGKG 239 I++L +L + GFQ I SS +K P + EI K ALILG EG G Sbjct: 187 GGEEEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNG 246 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + QE T + ++++LNV+ AV L + + A Sbjct: 247 IHERIQEAFTETITIPHSELVESLNVA-CVAVPLLLERKRVA 287 >gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] Length = 254 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + M GF G ++ L++ K + A+I+G EG+G+ + ++ Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G ++LNV AA + LY HF+ Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253 >gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 244 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 15/246 (6%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M N+ + ++ + + +YG V L KI + K + D + Sbjct: 1 MSKINKYKNNENRIKLMVVYGKRIVELILAQHQEKIINIYLAK------EVDKTFFNRLK 54 Query: 93 VKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P +D + + K HQG LE L +++ ++VL ++D N+G Sbjct: 55 KTQKPILRLDAKKAQAMAKGGNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLG 114 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ RSA DGI+ ++ + VL +++SGA+ +P+ + N D ++ F Sbjct: 115 SLFRSAYGLGVDGIVICGIHNFKQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFV 173 Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G S + P+ E K AL+LG EG+GL K + M +LNV Sbjct: 174 LLGTSLQGQNLPISLESKK---ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGV 230 Query: 268 AAAVAL 273 A A+ + Sbjct: 231 AGAILI 236 >gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 285 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLS---PTLDAVRNS-QLLMVLDHVNDPH 145 PV + + +I G +H+G +A P L+ L+AV + ++VL+++ D Sbjct: 82 IPVYVCDEEKLQEIAGFH-LHRGAIAAMNRPALADPRAMLEAVGSGPARIVVLENLVDHT 140 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA A D + T + + + G + +P+ RI + + + Sbjct: 141 NVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTVFQVPWTRIDGWPRSAKMLSEC 200 Query: 206 GFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 G+ T L+ +D L+ K+ KIA+ILGAEG GLR T + M Sbjct: 201 GYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAEGDGLRDSTIAAVDHSVVIPMA 260 Query: 258 GIIKALNVSNAAAVALY 274 G + +LNV+ A AVA + Sbjct: 261 GDVDSLNVAAAMAVACW 277 >gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 256 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASGALEH 186 R S + + ++ V+D HN AILRSA AF +I K+ + PS+ GA + Sbjct: 45 RTSYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSKGVT-----QGAHKW 99 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R+ ++ A+ +H+ GFQ + +P++ A++ G E G+ P+ + Sbjct: 100 LTLQRMPDIGRAIDALHARGFQVYATDLGEGAQPIDAVDLARPTAILFGNEKDGVSPEAR 159 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A ++ M G +++ NVS AAA+ALY Sbjct: 160 ERADGRFYIPMAGFVQSFNVSVAAAIALY 188 >gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470] gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470] Length = 227 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + LN+ K+ ++ +K +L + P+ V Q++ K Sbjct: 5 IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 61 GNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ +S+ G + +P+ N D + ++ + GF +G S +E + K Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L LG+E +GL K ++ + M +LNVS AA + + Sbjct: 179 CTLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] Length = 245 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A D++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVQDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210 +A A DG+ + + + + +S G+ H+P R I + + +K T Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181 Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +S D K +K D AL++G EG+G+ + E+A + H++MPG ++LNV+ Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236 Query: 268 AAAVALY 274 AA + ++ Sbjct: 237 AAGILMF 243 >gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 289 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNI 147 P+ + Q I ++ G + LA P L+ ++ N + +L+ V +P NI Sbjct: 88 PIYVINDQQIRQLAGYNLLRGALAAMYRVQRPNLASLFKSIPNPHPRIAILERVVNPANI 147 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204 GAI RSA A DG+I T + ++ + G + IP+ I T + + +H Sbjct: 148 GAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIPWTYIDAKTWHMEGIDLLHR 207 Query: 205 WGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 +G+QT + L ++ + + + K DK+A+ILG+EG GL +T + + M + Sbjct: 208 FGYQTAAMALRHNTIRIDDPRLAKLDKLAIILGSEGPGLEEQTITQSDFTIKIPMAVGVD 267 Query: 262 ALNVSNAAAVALY 274 +LNV+ A+A+A + Sbjct: 268 SLNVAAASALAFW 280 >gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32] Length = 227 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG V LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + K HQG LA PL P L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLALP-LKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12] gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 269 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 6/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + + G L P+L + R ++ ++++D V D NIGAI Sbjct: 78 IPVYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ + + + + GA+ +P+ + L L + WGF+T+ Sbjct: 138 FRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPW---TWLDGPLSDLARWGFRTV 194 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ +D+ ++ + K+A+++G EG GL + A + + M + +LNV+ Sbjct: 195 AMALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAA 254 Query: 268 AAAVALY 274 A+A+A + Sbjct: 255 ASAIAFW 261 >gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03] Length = 245 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A D++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVQDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210 +A A DG+ + + + + +S G+ H+P R I + + +K T Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181 Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +S D K +K D AL++G EG+G+ + E+A + H++MPG ++LNV+ Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236 Query: 268 AAAVALY 274 AA + ++ Sbjct: 237 AAGILMF 243 >gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 3/179 (1%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 I+ I G LA P L + + N++ + +L+ V +P N+GAI RSA A Sbjct: 88 NVINNITGFNLTRGVLAACRRPALPDPKELLANTKRIAILEDVMNPTNVGAIFRSAAALG 147 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSK 217 + + T + A+ + G + +P+ +D + +H GF+ + ++ ++ Sbjct: 148 VEAVFLTHPSADPFYRRAARVSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALKENA 207 Query: 218 KPLEQ-EIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PL E+KN DK+A++ G E G++ T + + + M + +LNV+ A+AV + Sbjct: 208 IPLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFW 266 >gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 367 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A + ++ L+ V++PHN+GA+LRS F + ++ + + +S ++A G EH+ Sbjct: 214 AAQQQDCVLALEQVSNPHNLGAMLRSCAHFGVNSVMVSD-SALLDSGAAVRTAEGGAEHV 272 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I+ ++ LQ+ G+ + L+ +S L + L+LG EG L Sbjct: 273 KAIKCDDVLQDLQRFQRAGYTVVTLAGNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQ 332 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 A ++ G + +LNVS +A + L + QNH Sbjct: 333 ADIAVTINGSGRVPSLNVSVSAGILLAEWWRQNH 366 >gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] Length = 272 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DP N+G I RSA A G+I + Y+P + +S GA+ +P+++ Sbjct: 123 LILDTIQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPK----VVRSTMGAIFRVPFVQ 178 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L + + G G D ++ + E DKIA ++G EG GL +TA + Sbjct: 179 SDDLIYTIDALKRKGVLIYGAHLDGEELYDTEFP-DKIAFLIGNEGNGLSKAVSDTADRL 237 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G +++LN + +A + Y Sbjct: 238 LRIPMEGKVESLNAAISATLLSY 260 >gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 267 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V P +++ G VH+G ++E PL + + ++ + VL+ + D N+GA Sbjct: 78 PVHLVDPVLAERVTGYH-VHRGALASMERKPLPGAP-EVLAGARRVAVLEGLVDHTNLGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K++ GA+ +PY R+ DAL + GF+ Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAGFEL 195 Query: 210 IGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L+ + + K AL+LGAEG GL PK A + M I +LNV Sbjct: 196 LALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNVG 254 >gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20] Length = 227 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVIMHILNSRPEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + K HQG LA PL P L V+ +Q L+VL + D NIG I RSA DG+I Sbjct: 57 LAKGGNHQGVLAKVELPLAVP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] Length = 248 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 15/249 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + +QK T ++ + G H A+ N + +I Q+ + L R++ N+ Sbjct: 13 KNAKKLHQKKYRT---DSYLIEGWHLFEEAVENQA-EIRQVFVLEAYLDRVENIQNV--- 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 TV I ++ QG+ E L P L + L L+ V DP N+G + Sbjct: 66 ----TVVTSEILSLLADSKTPQGIVAEIL-LEQPVLPYQLQGRYLY-LEDVQDPGNVGTM 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A DG++ +K + S +S G+ H+P ++ + ++ + Sbjct: 120 IRTADAAGFDGVMLSKASADLYSLKTLRSMQGSHFHLPIWKLDR-EELFERASQSNLAVL 178 Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + S++ Q + D++ L++G EGKG+ P+ A + H+ MPG ++LNV+ AA Sbjct: 179 ATTLSEASIDYRQLPQIDQLILVMGNEGKGISPEMATRADQLVHITMPGRAESLNVAVAA 238 Query: 270 AVALYITQN 278 + ++ +N Sbjct: 239 GILMFYLRN 247 >gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7] Length = 227 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 10/190 (5%) Query: 91 FPVKTVPPQTID------KIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVND 143 F +K P I + + K HQG LA PL P L ++ +Q L+VL + D Sbjct: 37 FALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLALP-LKEIKKAQKLLVLCGITD 95 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG I RSA DG+I + ++ +S+ G + +P+ + N D + ++ Sbjct: 96 VGNIGGIFRSAYCLGMDGVILDFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELK 154 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + GF +G S +E + K AL LG+E +GL K ++ + M +L Sbjct: 155 TSGFLCLGASMQGSSQVEN-LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSL 213 Query: 264 NVSNAAAVAL 273 NVS AA + + Sbjct: 214 NVSVAAGILM 223 >gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] Length = 278 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LLM+L+++ DP N+G I R+A GI+ ++ S + +S G+L +P++ Sbjct: 129 LLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRVPWLITE 188 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L+ L++ G +K +Q ++G EG GLR T A + Sbjct: 189 DLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAALAEARIR 248 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + AA + +Y Sbjct: 249 IPMGGRLESLNAAMAAGILMY 269 >gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] Length = 229 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A + D + +++ + + +S G+ H+P R+ Sbjct: 87 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 145 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + G I + S+ + K D ALI+G EG+G+ E A +AH Sbjct: 146 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 205 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA V ++ Sbjct: 206 IEMPGQAESLNVAVAAGVVIF 226 >gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] Length = 302 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 25/209 (11%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 PV + + ++ G +H+G + PT++ V + ++ + VL+++ D N+GAI Sbjct: 83 PVFVASAELLHRLTGYR-LHRGALSAMHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAI 141 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMHS 204 +RSA A D ++ T + A+ + G + +P+ RI + +H Sbjct: 142 MRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHR 201 Query: 205 WGFQTIGLS-----------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 GF T+ ++ D+ ++ + DK+ALI G EG GL KT + Sbjct: 202 LGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALIFGTEGDGLSRKTLAS 261 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 262 TDLTVKIPMSHQVDSLNVAASSAVAFYAT 290 >gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] Length = 229 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A + D + +++ + + +S G+ H+P R+ Sbjct: 87 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 145 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + G I + S+ + K D ALI+G EG+G+ E A +AH Sbjct: 146 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAH 205 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA V ++ Sbjct: 206 IEMPGQAESLNVAVAAGVVIF 226 >gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] Length = 261 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N+G + R+ A G+I + S ++A+GALE +P R++ Sbjct: 112 LVVALDQVQDPGNVGTLCRTLYALGGAGVILPRHNSAYLGPAAHRAAAGALERLPVARVT 171 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL AL + GF G D+ E ++ + L+LG E KGLRP + M Sbjct: 172 NLAHALDEAEEAGFSIYGAGCGPDAADAFEHAMQLPAV-LVLGNEDKGLRPGVAKRCGRM 230 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + + +LNV+ A A+ L + Sbjct: 231 LRIPLARKFDSLNVAQAGAILLGLA 255 >gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 244 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 35/253 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100 +YG H V F+LL + + W D + + F +K V Sbjct: 5 LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKKTKIKVNVVSENK 53 Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D+++ + HQG+ + +P + + + L+++LD ++D +N GAI+RS Sbjct: 54 LDQLLETQTQHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSC 113 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211 + DGII + ++ + K++SG+ I + +NL +A++ + + W + T Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYAT-N 172 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269 L+ +S + + N K A+I+G E KG+ T S ++++P I + N S A Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVAC 229 Query: 270 AVALYITQNHFAK 282 ++ + N+ K Sbjct: 230 SIICFWIANYLNK 242 >gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] Length = 245 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A D++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVRDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210 +A A DG+ + + + + +S G+ H+P R I + + +K T Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181 Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +S D K +K D AL++G EG+G+ + E+A + H++MPG ++LNV+ Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236 Query: 268 AAAVALY 274 AA + ++ Sbjct: 237 AAGILMF 243 >gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] Length = 247 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A + D + +++ + + +S G+ H+P R+ Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + G I + S+ + K D ALI+G EG+G+ E A +AH Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 223 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA V ++ Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244 >gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 251 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 116/251 (46%), Gaps = 16/251 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ +K R + LFL G H V A+ + + + +L+ + W+ Sbjct: 13 KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV T+ + + K + QG+A LS L+ V+ + +++D V DP N Sbjct: 67 ---GVPV-TIVTEAVMKAISSTETPQGIA-AVCRQLSTELEGVKTA---LLIDAVQDPGN 118 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A D +I + + + + ++ G+L H+P ++ +L + + G Sbjct: 119 LGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++ ++ AL+ G EG G+RP T ++ + G ++LNV+ Sbjct: 178 IPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237 Query: 267 NAAAVALYITQ 277 AA + LY Q Sbjct: 238 VAAGILLYSLQ 248 >gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307] Length = 279 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNI 147 P++ V P+ + + ++ +AL P +P L A Q LL+ LD V DP N+ Sbjct: 77 PLQPVSPEVLQAMASTDSPDGVIALLPHP--APGLQAPSWPQAKSPLLLALDRVQDPGNL 134 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A+A D + P + VL SA ALE + R+ +L L G Sbjct: 135 GTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAALE-LSMQRLDDLAPVLAMARERGV 193 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVS 266 D +P Q + L+LG EG GL P Q+ T++ H +++LNV+ Sbjct: 194 ACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTIPHH-AAVESLNVA 252 Query: 267 NAAAVALY--ITQNH 279 AA V L + Q H Sbjct: 253 VAAGVLLLERVRQGH 267 >gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae 2603V/R] gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 247 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A + D + +++ + + +S G+ H+P R+ Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + G I + S+ + K D ALI+G EG+G+ E A +AH Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 223 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA V ++ Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244 >gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901] gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901] Length = 258 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + LD V +P N+G I+RS A +I ++ A++ K+++G L P IR Sbjct: 113 FIALDSVTNPQNLGMIIRSVCASPATALILPRKGCAKLDALVIKASAGTLFKAPVIRCDT 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L LQ + G +GL+ D+K LE E +LG E G+ P + Sbjct: 173 LMSCLQAFKTKGACVVGLALDAKTSLENESSAGTRIYVLGNETDGISPDVSRLCDEQLKI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M +++LNV+ A++ + Sbjct: 233 PMRNGVESLNVAVTASLIAF 252 >gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae NEM316] gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316] Length = 247 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A + D + +++ + + +S G+ H+P R+ Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + G I + S+ + K D ALI+G EG+G+ E A +AH Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAH 223 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA V ++ Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244 >gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois] gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806] gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis] gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois] Length = 253 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 81/150 (54%), Gaps = 3/150 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D S L+++++ + DP+N GAI+R+ VA + II + + + V+ K++ G Sbjct: 96 DQKNTSYLIVMVEKIQDPYNFGAIIRTCVAAGVNYIIYSSSNNTKLNNVVLKTSQGYALK 155 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + I++ +L+ AL ++ + F + L S SK + +N I ++LG EG+G+ P+ Sbjct: 156 MQLIQVKDLSKALAELKKFNFLSYAASLKSPSKNYFSVKYENRTI-IVLGNEGEGISPRL 214 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M +++LNVS A + +Y Sbjct: 215 ENSVDYRIKIPMNNGVESLNVSVANGILIY 244 >gi|326392900|ref|ZP_08214113.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325991058|gb|EGD49837.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 82 Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 51/77 (66%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + DPHN+GAI+RSA AF GII KR + +A + K+++GA+EH+ ++SN Sbjct: 1 MLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSN 60 Query: 195 LTDALQKMHSWGFQTIG 211 + + ++ + G +G Sbjct: 61 INNTIRGLKERGLWIVG 77 >gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97] Length = 572 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 126/318 (39%), Gaps = 97/318 (30%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84 S P + F+YG V+AA+ RK+ L ++++ W+ Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135 A + H P KT T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 290 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 344 Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160 ++LD + DP N+GAI RSA F D Sbjct: 345 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 404 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------ 214 I + + S S V+ K+A+GA E IP + + +++ + + G++ + Sbjct: 405 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 464 Query: 215 ----------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 +S L E+ L+LG EG GL+ K + A S + +PG Sbjct: 465 NDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANI 522 Query: 260 ------IKALNVSNAAAV 271 + +LNVS A+A+ Sbjct: 523 RDDTAGVSSLNVSVASAL 540 >gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 260 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T+++ + ++ D V DP N+G I+R+A A II TK + +S G++ Sbjct: 103 TMESKFDGDFYLLCDKVQDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSI 162 Query: 185 EHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +IP Y NL+ ++++ GF + S D+ K Q ++ L +G EG G+ + Sbjct: 163 FYIPIYYDDENLS-LVKELKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSRE 221 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 E A + + MPG ++LNV+ A++V +Y + QN Sbjct: 222 VLEMADTKVKIPMPGNAESLNVAVASSVIMYEKVRQNQL 260 >gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 307 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 10/195 (5%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV ++++VG + +H+G +A P L + S+ ++VL+ + D N+G Sbjct: 113 PIPVFVATEAVLEQLVGFQ-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A +RSA A + D I+ T + + + G + +P+ R+ DA H+ GF+ Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230 Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + L D+ + +++ D K+AL+ GAE GL+ T A + + M + Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290 Query: 262 ALNVSNAAAVALYIT 276 +LNV+ A AVA + T Sbjct: 291 SLNVAGACAVACWAT 305 >gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] Length = 257 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+R+A A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D ++ + G++ + S K +E K+ + +G EG G+ K + A Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDKVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 300 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 68/138 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 150 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 209 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ + Sbjct: 210 DNAQAMAQLRQAGFAVAATLVDGGQDVFATALPQRLVYVMGAESEGMDRQFASACDLQLS 269 Query: 254 LHMPGIIKALNVSNAAAV 271 +H G++++LNV++A AV Sbjct: 270 IHGSGLVESLNVASATAV 287 >gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] Length = 247 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S KI+ + A L + A PV VP + +++ Sbjct: 6 LIYGIHALNESLASHSDIDKIYMKKGAVTGELLEIKRTAR-TQGVPVMEVPAERLNRF-- 62 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L P L +++LD V D N GAI R+ Sbjct: 63 TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL I R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 + +++G+E KG+ + T + G I +LNVS A + LY + + Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242 Query: 279 HFA 281 H A Sbjct: 243 HNA 245 >gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 300 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 68/138 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 150 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLP 209 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ + Sbjct: 210 DNAQAMAQLRQAGFAVAATLVDGGQDVFATALPQRLVYVMGAESEGMDRQFASACDLQLS 269 Query: 254 LHMPGIIKALNVSNAAAV 271 +H G++++LNV++A AV Sbjct: 270 IHGSGLVESLNVASATAV 287 >gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818] Length = 572 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 126/318 (39%), Gaps = 97/318 (30%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84 S P + F+YG V+AA+ RK+ L ++++ W+ Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135 A + H P KT T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 290 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 344 Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160 ++LD + DP N+GAI RSA F D Sbjct: 345 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 404 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------ 214 I + + S S V+ K+A+GA E IP + + +++ + + G++ + Sbjct: 405 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 464 Query: 215 ----------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 +S L E+ L+LG EG GL+ K + A S + +PG Sbjct: 465 NDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANI 522 Query: 260 ------IKALNVSNAAAV 271 + +LNVS A+A+ Sbjct: 523 RDDTAGVSSLNVSVASAL 540 >gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 283 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 12/196 (6%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV ++++VG +H+G A+ P P + ++++ +++L+ + D N+ Sbjct: 86 PIPVFVASEDLLERLVGFH-LHRGAIAAMLRKPAPDPR-EILKHASRVLILEDLVDHTNV 143 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA +RSA A D I+ T + + + G + +P+ R+ D H GF Sbjct: 144 GAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP-ALFHEAGF 202 Query: 208 Q--TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + L DS+ + E+ D K+ALI GAE GL+P+T A + + M + Sbjct: 203 ELAALALREDSQDLRDYATELAGDPTRKVALIAGAERDGLKPQTIARADKVVRIAMAHGV 262 Query: 261 KALNVSNAAAVALYIT 276 +LNV+ A A+A + T Sbjct: 263 DSLNVAGAIAIACWAT 278 >gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca] Length = 366 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 31/206 (15%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 Q +D + + VHQG+ +E +PL V + QL +VL+ + DP N+GA+L Sbjct: 112 QKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLERIQDPRNLGALL 170 Query: 152 RSAVAFSCDGIITTKRYSPSE--------SAVLAKSASGALEHIPYIRISNLTDALQKMH 203 RSA D IIT+ R + V++K+++GA+E + +L LQ Sbjct: 171 RSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKA 230 Query: 204 SWGFQTIG--------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA---- 248 G+ G +S S+ P+ ++ + L+LG EG GL Q + Sbjct: 231 REGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQASCQLLL 290 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T + +P +++LNVS AA + L+ Sbjct: 291 TILPGRQLPPGLESLNVSVAAGILLH 316 >gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 231 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 85/152 (55%), Gaps = 15/152 (9%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRYSPSESAVLAKSASGALEHIPY 189 S+ ++VL+++NDP N+G ++RSA AF + +I Y+ +++ GA ++ Sbjct: 88 SKRILVLENINDPGNLGTLVRSAFAFGFNDVIVEGVDIYNHK----FLQASQGAFFYVNL 143 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 I++ N D L+ +H++ L SD+ + ++N K +AL+LG E G+ + ++ A Sbjct: 144 IKVKNAVDFLKSLHNYQIYVTTLRSDAFEY--DAVENPKWLALVLGNEANGISLEMEKLA 201 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + ++ ++LNV++A A+ L NHF Sbjct: 202 SKLIYIKTN--FESLNVASAGAILL----NHF 227 >gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 253 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 22/236 (9%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 F+ G+++V AL++ + + ++ D + F + + + KI Sbjct: 29 FFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFMLIRIANKLFKKISDTV 81 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR- 167 + +A+ P+ D ++ + ++ D+V DP N+G I+R+A AF D + T Sbjct: 82 TPQKIMAIVRMPVYREE-DFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAVFTINNS 140 Query: 168 ---YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 Y+P + +++ G++ HIP I +N + L K+ G + +K + E+ Sbjct: 141 VDIYNPK----VLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFV-HEV 193 Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + DK A ILG E +G+ + + + M G ++LNVS AAA+ LY +Q Sbjct: 194 EIDKGTAFILGNEARGV--SSLDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQ 247 >gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] Length = 290 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +L+ V +P NIGAI RSA A DG+I T + ++ A G + +P+ + Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196 Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++ + +H G++T + + D P Q K D++A+ILG+EG GLR T Sbjct: 197 KVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDP--QLAKVDRLAIILGSEGPGLRENTIT 254 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M + +LNV+ A+A+A + N K Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWELGNRKVK 290 >gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] Length = 260 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 18/251 (7%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF-PV 93 FN K ++ + E L L+G + V L NN K L + L +L + + + Sbjct: 9 FNNKHQNKHKKERLCLFGYNGVYEGLINNLKIKKVYLHKEDHPLLKLIKQKGIEYELHTI 68 Query: 94 KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146 K Q D HQG E + + ++N Q +++VLD ++DP N Sbjct: 69 KWFDNQYRDL-----PNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-W 205 G ILRS +A + G+I K S + + K++ GA ++ I ++NL+ A++ + + Sbjct: 124 FGGILRSCLAANVLGVIFKKDNQVSINNTVIKTSLGACFYLNLIEVANLSYAIKDLQEKY 183 Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKAL 263 GF + + SD + + N I LI+G E KG+ + + A + M I++L Sbjct: 184 GFWSYVSNLSDQAQDYNVDYANKSI-LIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSL 242 Query: 264 NVSNAAAVALY 274 NVS A + L+ Sbjct: 243 NVSVATGIMLF 253 >gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1] gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1] Length = 271 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 76/148 (51%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + + L++ LD + DP N+G I+R+A A D I+ ++ + + +SA G+L H Sbjct: 109 DVQKENFLMIALDRIQDPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFH 168 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P I+ +L L ++ G + + +KKP +++G+E +G+ + Sbjct: 169 VPIIQTDDLIKTLIELKEKGGKVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVR 228 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + MPG ++LNV+ A + ++ Sbjct: 229 ISDELVKIPMPGSAESLNVAIAHGIMVF 256 >gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3] gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3] Length = 290 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84 RD ++ ++ R ++ + L H A S +L KN L+ + D Sbjct: 35 RDIRERDLTGRQGRFIAEGTVVLRMLAAAHKAGGAFAAES-----ILILKNRLSGVADIL 89 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDH 140 A+ P PV +D IVG +H+G+ + TLD + + S L++V Sbjct: 90 ADFPPDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDITLDGLTDALPASSLVLVGCG 148 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +++ N+GA+ R+A AF D + + + + G++ +PY R L+ Sbjct: 149 ISNHDNLGAMFRNAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGAVQMLE 208 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ GF LS + + + ++D++AL++G EG+GL P++ + A + + Sbjct: 209 RLSQAGFAIWSLSPNGETEIRDIPRSDRMALVIGTEGEGL-PQSVLSRFHTARIAQSPQL 267 Query: 261 KALNVSNAAAVALY 274 +LN A+ +ALY Sbjct: 268 DSLNAGTASGLALY 281 >gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128] gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128] Length = 179 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I Sbjct: 15 HQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKEL 74 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ +S+ G + +P+ + N D + ++ + GF +G S +E + K A Sbjct: 75 AYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKKCA 132 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L LG+E +GL K ++ + M +LNVS AA + + Sbjct: 133 LFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175 >gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] Length = 255 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H V ALN + I ++AT+ + + D +P P V + + + + K Sbjct: 31 MLDGWHLVQEALNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTN 86 Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 QG+ +T+ L + + D V N L+ LD + DP N+G ++R+A A G+ +K Sbjct: 87 TPQGIFAQTS-LPNNSFDPKYVHNGSWLL-LDRIQDPGNVGTLIRTADAAGFSGVALSKE 144 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + ++ G+ H+ ++ +L D + K+ + + G + S++ + + Sbjct: 145 SADPFNPKVVRAMQGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPE 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG EG+G+ P+ Q + H++ G ++LNV+ A + ++ Sbjct: 205 KNFALILGNEGQGIDPEIQAKTSENLHINFLGKAESLNVAVAGGILMF 252 >gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT 98-5491] gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] Length = 228 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG LE L +++ ++VL ++D N+G++ RSA DGI+ ++ Sbjct: 61 HQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHNF 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKI 229 + VL +++SGA+ +P+ + N D ++ F +G S + P+ E K Sbjct: 121 KQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNLPISLESKK--- 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL+LG EG+GL K + M +LNV A A+ + Sbjct: 177 ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220 >gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1] Length = 263 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 76/141 (53%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V +P N+G I+RS A + D I+ + + S ++ K++ G L + I+ SN Sbjct: 123 IIALDGVTNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSN 182 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + L+ G LSS + K +++I ++K +LG E +G+ P ++ + + Sbjct: 183 LKETLKHFRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAI 242 Query: 255 HMPGIIKALNVSNAAAVALYI 275 M +++LNV+ A++ ++ Sbjct: 243 PMQRGVESLNVAVTASLLAFL 263 >gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 23/257 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +D KK++ + + + + G H + AL R I Q+ +N L +L Sbjct: 7 KDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGRSIKQIFVEENKLTKLTEMIGA 65 Query: 88 PHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V V + + + E+ QGL E + +D ++ ++L++V DP Sbjct: 66 EKSLTDLSVNLVSKEVLKSLADSES-PQGLIAEVTKI-EEVID--FSAAKFLLLENVQDP 121 Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 N+G ++R+A A +I T YSP + +S G+ H+P +R++ D Sbjct: 122 GNVGTMIRTADAAGFSAVILLGETADIYSPK----VMRSMQGSNFHLPLVRMAK-EDCFA 176 Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++ G T LS++S + +I N+ ALI+G EG G+ + + A + H+ MP Sbjct: 177 QLKKAGISILTTTLSANS---VSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMP 233 Query: 258 GIIKALNVSNAAAVALY 274 G ++LNV+ AA + ++ Sbjct: 234 GQAESLNVAVAAGILMF 250 >gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 249 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASGALEH 186 R + + ++ V+D HN AILRSA AF +I K+ + PS+ GA + Sbjct: 41 RTGYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSKGVT-----QGAHKW 95 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R+ ++ A+ +H+ GFQ D +P++ A++ G E G+ P+ + Sbjct: 96 LTIHRMPSVGRAIDALHARGFQVYATDLGDGAEPIDAVDLARPTAILFGNEKDGVSPEAR 155 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A ++ M G +++ NVS AAA+ALY Sbjct: 156 ERADGRFYIPMAGFVQSFNVSVAAAIALY 184 >gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104] Length = 258 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ QN+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFQNN 257 >gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103] gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103] gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355] Length = 377 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L+ + ++ L+ V++PHN+GAI+RS F G++ S ES ++A G E Sbjct: 223 LNKAESKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAEGGAE 281 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ I + + L+ G+ + SS L + K+ L+LG E +GL T Sbjct: 282 HVQAISGATFNEGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMVLVLGQEREGLSDSTF 341 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + + G +++LNVS A V L + QN Sbjct: 342 QQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 376 >gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] Length = 303 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +L+ + D N+GAI RSA A + DGI+ + A+ + G + +P+ RI Sbjct: 138 VCILEGIVDHSNVGAIFRSAAALNVDGILASPTCVDPLYRRSARVSMGTVFQVPWTRIGT 197 Query: 195 LT-----DALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKT 244 D L +H GF + LS DS P Q I +++A+ +G EG GL+PKT Sbjct: 198 EARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSI--ERLAVFMGTEGAGLQPKT 255 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 256 IAGCDKTIRIPMAHGVDSLNVAAASAVAFW 285 >gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] Length = 367 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS----ESAVLAKSASGALEHIPY 189 ++ L+ V +PHN+GAI+RS F G+I SP ES ++A G E+I Sbjct: 219 CVLALEDVGNPHNVGAIMRSCAHFGVKGVI-----SPDSAVLESGAAVRTAEGGAEYIQG 273 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I N L K G+ + SS PL + K+ LILG E GL T Sbjct: 274 IDADNFAQTLDKFKKAGYTLVATSSHKGSVPLSKAQLPAKMVLILGQEKDGLSESTLNQG 333 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 ++ G +++LNVS A+ V L Sbjct: 334 DMSIYIGGTGHVESLNVSVASGVLL 358 >gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 269 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 11/202 (5%) Query: 83 WDANLPHPF------PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLL 135 W A+L F PV +++I G +H+G +A P P + + ++ + Sbjct: 63 WLADLDDVFQAYPDVPVFIGKAALLEEITGFH-LHRGAMAAMERPDPVPLPELLAGARRV 121 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+ + Sbjct: 122 AVLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESW 181 Query: 196 TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252 LQ + GF + L+ D++ N D++AL+LG EG G+ P+T Sbjct: 182 PQDLQVLKDHGFTVAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAV 241 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 242 KIPMRNGVDSLNVAAASAVAFW 263 >gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1] Length = 272 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P +++ G VH+G +++ PL P + + ++ + +++ VND N Sbjct: 76 PAPVYAVSPDLAERVTGYH-VHRGALASMQRKPL--PEAEQLLEGARRVAIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLETWPRGLEAVRHTG 192 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+ + L+ D K + + +++AL+LGAEG GL + A + M + +L Sbjct: 193 FKILALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 236 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 16/172 (9%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P R ++VLD + DP N+G + R+A+A + I P VL +++SGA Sbjct: 63 PNYQFNRKDDFVLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGGAHPLGQKVL-RASSGA 121 Query: 184 LEHIPYIRISNLTDALQKMHSW--------GFQTIGLSS---DSKKPLEQEIKND---KI 229 + H+P++R + + + GF+ SS +KKP + + D + Sbjct: 122 VFHLPFLRFDGIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWSRRT 181 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ALILG EGKG+ K QE + I+++LNV+ AV L + + A Sbjct: 182 ALILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVA-CVAVPLLLERKRVA 232 >gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae] gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae] Length = 471 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 17/180 (9%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV--PPQTI 101 N FL+G+ AL R QL + R++ +L VK V P + Sbjct: 254 NEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADRIEEIESLADEKEVKVVRIPKHRM 313 Query: 102 DKIVGKEAVHQGLALETA-----PL----LSPTLDA-VRNSQLLMVLDHVNDPHNIGAIL 151 K++G + HQG+ LE PL +SPT+D + +VL+ V DP N GAIL Sbjct: 314 TKMIG-DGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPIWLVLNEVQDPMNFGAIL 372 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RS+ D II + + V++K++SGA+E + ++ LQ + S G+ +G Sbjct: 373 RSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMEDIPALLQNLSSSGWTVVG 432 >gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 310 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 16/256 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY + + R E LF+ V + LL +A + A+L Sbjct: 48 RDYVGLTDVALRRRREPA-EGLFIAEGEMVIERARRAGYRPRSLLVGPAKVATVP--ADL 104 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV P + I G + VH+G LA +P D + ++ ++V + + N Sbjct: 105 EPGVPVYLAGPDVLATITGFQ-VHRGALASMCRRPPAPAADVLATARRVLVCEDIVSHTN 163 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRISNLTDALQKM 202 +GAI RSA D ++ SPS + L + + G + +PY R+ AL + Sbjct: 164 LGAIFRSAAGLGMDAVL----LSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLL 219 Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 GF + L+ S + PL++ + D++AL+LG+EG GL AT + M Sbjct: 220 VKHGFMLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRIPMAHG 279 Query: 260 IKALNVSNAAAVALYI 275 + +LNV+ AA+A Y+ Sbjct: 280 VDSLNVAATAAIACYV 295 >gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 278 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++L+ + DP N+G ILR+ G+I T Y+P + +S G++ +P++ Sbjct: 124 LVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPK----VIRSTMGSVYRVPFV 179 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +L DA++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 180 YVEDLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADA 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + AA++ +Y T Sbjct: 240 YIKIPMLGKVESLNAAVAASILMYET 265 >gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88] Length = 462 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S + SAV K+++GA E+IP + +N Sbjct: 258 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNP 317 Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T L+ H W F Q++ S++ S++ ++ ++ L+LG+E Sbjct: 318 TLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSED 377 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + + +PG I + + A V Sbjct: 378 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 409 >gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 285 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V NDP N G ++R A A D ++ + +S A++++G+L H+P R Sbjct: 123 RLVSVPVETNDPGNAGTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARS 182 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 +N+ D L ++ + G Q + ++D + L+ EI A + G E GL + A Sbjct: 183 TNVKDVLGQLRAQGMQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADL 242 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ +Y Sbjct: 243 RVSIPIRGRAESLNLATAASICMY 266 >gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 277 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + +++ + VL+ VND N+G+I R+A + D +I + + + G Sbjct: 119 DVIADARTIAVLEGVNDHENLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALL 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ---EIKNDKIALILGAEGKGLRP 242 +P+ R S+ L+ + GF+ + ++ D S L +++ D++A+++GAEG GL Sbjct: 179 VPFARASSWPTDLELLRDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTE 238 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + + M +LNV+ AAA+A Y Sbjct: 239 RTMRASDVRVRIPMSRGTDSLNVATAAALAFY 270 >gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] Length = 275 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G + L P L P ++AV R ++ + VL++V +P NIGA Sbjct: 79 IPVYTAEFDVLTKLTGFKLTRGMLCAMYRPKL-PAVEAVCRGARRIAVLENVMNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWG 206 I RSA A + D ++ T S + + G + +P+ + ++ + G Sbjct: 138 IFRSAAALNMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLG 197 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T ++ SD ++ + D++ALILG EG GL +T + M + +L Sbjct: 198 FKTAAMALSDESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSL 257 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 258 NVAAASAVAFW 268 >gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143] Length = 419 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S + SAV K+++GA E+IP + +N Sbjct: 215 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNP 274 Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T L+ H W F Q++ S++ S++ ++ ++ L+LG+E Sbjct: 275 TLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSED 334 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + + +PG I + + A V Sbjct: 335 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 366 >gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 270 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 6/249 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R + LL T L+ L D P Sbjct: 17 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-PV 74 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + + ++VG LA P P D ++ ++ + VL+ VND N+G+ Sbjct: 75 DVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGS 134 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D ++ + + + G +P+ R+ +L ++ GF+ Sbjct: 135 IFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRL 194 Query: 210 IGLS--SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ DSK + ++ +K+AL++GAEG GL + + M +LNV Sbjct: 195 LAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLNV 254 Query: 266 SNAAAVALY 274 + AAA+A Y Sbjct: 255 ATAAALAFY 263 >gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 324 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 25/209 (11%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 PV + + ++ G +H+G + PT++ V + ++ + VL+++ D N+GAI Sbjct: 105 PVFVASAELLHRLTGYR-LHRGALSAMHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAI 163 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMHS 204 +RSA A D ++ T + A+ + G + +P+ RI + +H Sbjct: 164 MRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHR 223 Query: 205 WGFQTIGLS-----------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 GF T+ ++ D+ ++ + DK+ALI G EG GL KT + Sbjct: 224 LGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALIFGTEGDGLSRKTLAS 283 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA Y T Sbjct: 284 TDLTVKIPMSHQVDSLNVAASSAVAFYAT 312 >gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] Length = 254 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193 ++L+ V DP N+G ++R+A A DG++ T + + + +S G+ H+P IR+ Sbjct: 111 LLLEDVQDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSMQGSHFHLPVIRLPKE 170 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L A+++ + T LS +S + E K L++G EG+G+ K E+A + H Sbjct: 171 QLLTAIEESQLPIYATT-LSQNSVDYKQVE-KVPAFVLVMGNEGQGISSKMAESADQLVH 228 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + ++ Sbjct: 229 ITMPGQAESLNVAVAAGILIF 249 >gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 260 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 LMVL+++ DP N+G ILR+ G+I ++ + + +S G++ +P+ + Sbjct: 113 LMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPFFYTDD 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + + G + K EQE A ++G EG GL K + A + + Sbjct: 173 LEQTVLDLKARGIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMADTWVKI 232 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 M G +++LN + AA++ ++ T Sbjct: 233 PMEGKVESLNAAIAASILMFET 254 >gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 272 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 7/180 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV + P +++ G VH+G +++ PL + + ++ ++V++ VND NI Sbjct: 76 PAPVYAIQPDLAERVTGYH-VHRGALASMQRKPL-PDAAELLVGARRVVVMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ L+ + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPRGLEAVREAGF 193 Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + L+ K E + +++AL+LGAEG GL + A + M + +LN Sbjct: 194 KLLALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253 >gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] Length = 257 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+RSA A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRSAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D ++ + G++ + S K +E K+ + +G EG G+ + + A Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] Length = 255 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H V ALN + I ++AT+ + + D +P P V + + + + K Sbjct: 31 MLDGWHLVQDALNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTN 86 Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 QG+ +T+ L + + D V N L+ LD + DP N+G ++R+A A G+ +K Sbjct: 87 TPQGIFAQTS-LPNNSFDPKYVHNGSWLL-LDRIQDPGNVGTLIRTADAAGFSGVALSKE 144 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + ++ G+ H+ ++ +L D + K+ + + G + S++ + + Sbjct: 145 SADPFNPKVVRAMQGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPE 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG EG+G+ P+ Q + H++ G ++LNV+ A + ++ Sbjct: 205 KNFALILGNEGQGIDPEIQAKTSENLHINFLGKAESLNVAVAGGILMF 252 >gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P P+ T P + ++++ G +H+G AL A L T ++ ++VL+ + Sbjct: 84 PVPIFTAPEEVLEQLTGFH-LHRGALAAMHRPALPRADELLATARGGAPARRVVVLEDLV 142 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GA+ RSA A D ++ T + + + G + +P+ R+ D + + Sbjct: 143 DHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWPD-MGAL 201 Query: 203 HSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 H GF L+ SD PL+ K+A+++G EG GL +T + + Sbjct: 202 HGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASDYTVRI 261 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282 M + +LNV+ A+AV + T+ A+ Sbjct: 262 PMEHGVDSLNVAAASAVVFWATRGVGAR 289 >gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 371 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 75/142 (52%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V ++ DP N+GA +RS++A D ++ + + +A++++GALE + R Sbjct: 221 KLIAVATNIEDPRNLGACIRSSLALGVDILLLPAKGMCGITPSVARTSAGALEKLRICRP 280 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL A+ ++ G+Q +GL +D++ L D + L +G E GL P ++ ++ Sbjct: 281 DNLEGAIGELKMAGYQILGLDADTETNLAGFDFADHVVLAVGGEDVGLPPFIKKQCDAVL 340 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M + N S A ++ LY Sbjct: 341 RIPMKPEAHSYNASVALSLGLY 362 >gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] Length = 270 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 +MVL+ + DP N+G I+R+ GI+ T Y+P + +S G++ +P++ Sbjct: 115 IMVLETIQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPK----VIRSTMGSIFRMPFV 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L DA M + G + +QE D + ++G E GL +T A Sbjct: 171 YADDLQDACLLMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADC 230 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + + M G +++LN + AA+V ++ T Sbjct: 231 LVKIPMEGKVESLNAAIAASVLMFET 256 >gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126] gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126] Length = 245 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 5/183 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A +++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELC-ETQTPQGIVAEVAKQSQALPESLSGKYLL--LEDVQDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A DG+ + + + + +S G+ H+P R + D ++ G + Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYR-GPILDMVEACKKQGVPVLAT 180 Query: 213 SSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + +K D AL++G EG+G+ E+A + H+ MPG ++LNV+ AA + Sbjct: 181 TLSDISVDYKAVKTDGNFALVMGNEGQGISQDMAESADQLVHISMPGQAESLNVAVAAGI 240 Query: 272 ALY 274 ++ Sbjct: 241 LMF 243 >gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] Length = 260 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 34/280 (12%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIF 69 I SLK+ ++R+ HR + + +NL L+ G H + A N S Sbjct: 2 ITSLKNPLVKQIRQLHRTKGRRE------------QNLLLFEGTHLLETACEVNCSLDCL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLS 123 A W + P + + T Q I+ +V E V Q LA P ++ Sbjct: 50 CYTA--------QWQSRYPQLWELATQKAQRIE-LVSPE-VLQALATTVNPDGVIATAVN 99 Query: 124 PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 P + + + ++ ++L+ + DP N+G I+R+AVA DGI + ++ + +S++ Sbjct: 100 PKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA H+P I +L+ ++ + G Q I L + + + ++ + ++LG EG GL Sbjct: 160 GAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSL-ILLGNEGAGL 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + I++LNV+ A A+ LY Q Sbjct: 219 SEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQM 258 >gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605] gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605] Length = 249 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+ P + P LD L+VLD + DP N+G +LR+A+A + + P + V Sbjct: 70 LDRLPAVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPLGTKV 123 Query: 176 LAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIG-LSSDSKK----PLEQ 222 L ++++GAL +P+ R IS L L+++ + G Q + L DS + P Sbjct: 124 L-RASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASPIPYWD 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 AL+LG EG GL P Q T L +++LNV++AA Sbjct: 183 LDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAA 229 >gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] Length = 291 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P P+ + + + G LA P L ++ + + + VLD + D N+G Sbjct: 80 EPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTNVG 139 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMH 203 A RSA A + D ++ + + + G + +P+ R+ S D + + Sbjct: 140 AAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMATLR 199 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF L+ +D L+ I D++AL G EG+GL + E + + M G + Sbjct: 200 AAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAGGV 259 Query: 261 KALNVSNAAAVALYITQNH 279 +LNV+ A+AV + H Sbjct: 260 DSLNVAAASAVVFWQLCPH 278 >gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 290 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +L+ V +P NIGAI RSA A DG+I T + ++ A G + +P+ + Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196 Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++ + +H G++T + + D P E+ D++A+ILG+EG GLR T Sbjct: 197 KVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDPQLAEV--DRLAIILGSEGPGLRENTIT 254 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M + +LNV+ A+A+A + N K Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWELGNRKVK 290 >gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33] gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33] gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1] gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14] Length = 246 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N+G ++R+A A DG+ + + + + + +S G+ H+P R+ Sbjct: 104 FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYRMP- 162 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 ++ L + S Q + + S+ +EI + AL++G EG+G+ + A + H Sbjct: 163 ISSILTALKSNQIQILATTLSSQSVDYKEITPHSSFALVMGNEGQGISDLVADEADQLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + L+ Sbjct: 223 ITMPGQAESLNVAIAAGILLF 243 >gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus] Length = 550 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 17/159 (10%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 Q+ + LD V DP N GA+LRSA F G++ + S + +A ++KS++GA+E + Sbjct: 376 GQVWLALDEVTDPQNFGALLRSAHFFGASGVVACAKNSAALTATVSKSSAGAVEVMRVHS 435 Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIA----LILGAEGKGLRPKT-- 244 +N+ L++ G++ +G S S+ PL E+ A ++LG EG G+R Sbjct: 436 TANMMRFLKRSRENGWRVVGTSVSERSGPL-HELPAGPGAPPTIVVLGNEGYGVRTNVLR 494 Query: 245 ---------QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++A P + +LNVS V L+ Sbjct: 495 ECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGGVVLF 533 >gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora] Length = 593 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 145/344 (42%), Gaps = 82/344 (23%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQPENL----------FLYGVH 55 ++ E+ S +D+ + R D + + F R + P++L FLYG Sbjct: 226 QRPERRDSFRDTRSSTRERRETDRTPRRELFRDNDREETTPKSLSIPYTTAASQFLYGTS 285 Query: 56 TVSAALNNPSRKIFQL----------LATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 V AAL RK+++L LA A+ +L + F V + +DK+ Sbjct: 286 VVEAALQAARRKLYKLYIYAGANREKLAKDAAIQKLAQRNKVEIVF-VNEDGLKMMDKMS 344 Query: 106 GKEAVHQGLALETAPLLSPTL----------------------------DAVRNSQ---- 133 G H G LE +PL P + +A+ N + Sbjct: 345 GSRP-HNGYILEASPLPQPPVISLGEVVEAETGQGTTGYKVVLGHQSHEEALINGKSDFV 403 Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++V+D + DP N+GAILRS + TKR S S + V K+++GA Sbjct: 404 SASSTTHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKASAGAS 463 Query: 185 EHIPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLE----QEI---KNDKIA 230 E + + +L LQ G+ +T G S + +K L+ +EI + + Sbjct: 464 ESLALFSVGHLPKFLQDSRENGWLVYAAVPRTSG-SGNLQKHLDLHEIEEIDPLRTNPCI 522 Query: 231 LILGAEGKGLRPKTQETATSMAHL-HMPG--IIKALNVSNAAAV 271 L+LG+EG+GL + + A ++ +M G +I +LNVS AA + Sbjct: 523 LLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGL 566 >gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1] gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1] Length = 251 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 34/255 (13%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 RD KK Q+ ENLF+ G+H V+ A+ R I + + + + +D N Sbjct: 19 RDDKKFQT----------VENLFVIEGLHMVNEAI---KRNIVKTIFLEEKMFSKIYDIN 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 F + +KI + QG+ T L ++ + N +++LD + DP N Sbjct: 66 ---NFECVLISENVSNKISSTKT-SQGI-FATCILEDQKINMLEN---ILILDQIQDPGN 117 Query: 147 IGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +G ++RSA +F ++ + Y+P + +S G L I I +L + ++ Sbjct: 118 MGTLIRSAASFEFQTVVASNNSVSFYNPK----VLRSTQGNLFSINLIN-DDLIKTIDEL 172 Query: 203 HSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +Q IG + + ++I KN K ALI+G E KG+ + + ++ M Sbjct: 173 KQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNE 232 Query: 260 IKALNVSNAAAVALY 274 +++LN + A ++ +Y Sbjct: 233 VESLNAAIAGSIIMY 247 >gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 252 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 +KK+ N+K R + LF+ G H V A+ N + +L+ ++ W+ + Sbjct: 15 WKKLH--NKKDR---DKQGLFMVEGFHLVEEAIKNKDC-VKELIIRESIEVPAQWNIDGI 68 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 TV + I K++ QG+ + + + +Q +++LD V DP N+G Sbjct: 69 EI----TVVNEAIIKLLSDTETPQGII--AVCFQTKHAEIIHTAQKVLLLDAVQDPGNLG 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R+A A D II + + + +S GA+ H+P ++ +L + + + G Sbjct: 123 TIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK-GDLLEMISLLKERGIA 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G S + K +++ ALI+G EG G+ K E ++ + G ++LNV+ A Sbjct: 182 VYGTSLQNGKVYTCVKPSNEFALIVGNEGNGVSEKVLEQTDQNLYIPIYGKSESLNVAIA 241 Query: 269 AAVALY 274 + + LY Sbjct: 242 SGILLY 247 >gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] Length = 283 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+V + DP N+G ++RSA AF GI+T +A + ++++G++ +P + Sbjct: 131 LLLVTASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFRMPVVARC 190 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L ++ + G ++D P Q AL++G EG GL P + A + Sbjct: 191 E-EEVLARLAAQGVTLFATTADGDLPATQAALTQPCALLIGNEGAGLTPHLLQAADARLA 249 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + PG +++LN + A ++ LY Sbjct: 250 IPTPGPVESLNAAIAGSILLY 270 >gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801] gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801] Length = 260 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 34/280 (12%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIF 69 I SLK+ ++R+ HR + + +NL L+ G H + A N S Sbjct: 2 ITSLKNPLVKQIRQLHRTKGRRE------------QNLLLFEGTHLLETACEVNCSLDCL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLS 123 A W + P + + T Q I+ +V E V Q LA P ++ Sbjct: 50 CYTA--------QWQSRYPQLWELATQKAQRIE-LVSPE-VLQALATTVNPDGVIATAVN 99 Query: 124 PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 P + + + ++ ++L+ + DP N+G I+R+AVA DGI + ++ + +S++ Sbjct: 100 PKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA H+P I +L+ ++ + G Q I L + + + ++ + ++LG EG GL Sbjct: 160 GAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSL-ILLGNEGAGL 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + I++LNV+ A A+ LY Q Sbjct: 219 SEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQI 258 >gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 247 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPH 145 ++ VP + +D++ + HQGL + + L+++ L+++LD + D H Sbjct: 51 IRRVPREKLDRLTRRN--HQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVH 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N GAI RS + I+ S S +A K ++GAL + R SN+ +A++ + Sbjct: 109 NFGAIARSCECAGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLC 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ + + + A+++G+E KG+ P + + G I +LNV Sbjct: 169 GYKVYAATEKATTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNV 228 Query: 266 SNAAAVALY 274 S A AV LY Sbjct: 229 SAATAVLLY 237 >gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 245 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 9/185 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK V P+ + ++ + QG+ E A +++ LL L+ V DP N+G ++R Sbjct: 65 VKLVSPEVLKELC-ETQTPQGIVAEVAKQSQALPESLSGKYLL--LEDVQDPGNVGTMIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210 +A A DG+ + + + + +S G+ H+P R I + + +K H Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKK-HDLTVLAT 180 Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 LS S + +K D AL++G EG+G+ + E+A + H++MPG ++LNV+ AA Sbjct: 181 TLSEVSVDY--KAVKTDGNFALVMGNEGQGISKEMAESADQLVHINMPGQAESLNVAVAA 238 Query: 270 AVALY 274 + ++ Sbjct: 239 GIIMF 243 >gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR] Length = 462 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 20/154 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+GAI+RSA F D II + R S SAV K+++GA E+IP + +N Sbjct: 258 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSAPISAVAVKASAGAAENIPILTTTNP 317 Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237 T L+ H W F Q++ S++ S++ ++ ++ L+LG+E Sbjct: 318 TLFLKNTHMNGWKFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNESPCILMLGSED 377 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +GL+ ++ A + + +PG I + + A V Sbjct: 378 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 409 >gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 255 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 36/279 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S K ++I LKD R HR+ +K+ + G H + A N+ Sbjct: 7 VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 K LL T AL L + +P+ V + KI Q A+ + P + Sbjct: 45 QIIK--TLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D N +++LD + DP N+G ++RSA +F+ +I + + + +S G Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239 L + + L + ++H + IG S D K L + +K +DK ALI+G EGKG Sbjct: 157 LFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKALSK-VKFDSDDKYALIIGNEGKG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ + ++ M + ++N + A ++ +Y N Sbjct: 215 ISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253 >gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS] gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] Length = 245 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEYET----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397] gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397] Length = 212 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A N + L+ V DP N+G I+R+A A Sbjct: 48 PQGIVAVVQKEEVGQ---------------ADLNQGKFLFLEDVQDPGNVGTIIRTADAA 92 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 93 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209 >gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] Length = 246 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A N + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLNQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] Length = 147 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+ V +PHN+GAI+RS F +G++ + + ES ++A G EHI I + Sbjct: 1 MLALEEVGNPHNLGAIVRSCAHFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADD 59 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L G+ + SS PL Q K+ L+LG E GL + + Sbjct: 60 FLSVLDTFRKAGYTIVTTSSHKGTPLAQAKLPSKMVLVLGQERDGLSDSAWQQGDMSVSI 119 Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279 G +++LNVS A + L + QN Sbjct: 120 GGTGKVESLNVSVATGILLADWWRQNQ 146 >gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 307 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV ++++VG +H+G +A P L + S+ ++VL+ + D N+G Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A +RSA A + D I+ T + + + G + +P+ R+ DA H+ GF+ Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230 Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + L D+ + +++ D K+AL+ GAE GL+ T A + + M + Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290 Query: 262 ALNVSNAAAVALYIT 276 +LNV+ A AVA + T Sbjct: 291 SLNVAGACAVACWAT 305 >gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum] Length = 282 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ D + P N+GA++R+A A GI +T P + L ++A+G+ +P I Sbjct: 117 LFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKAL-RAAAGSAFRLPIIAG 175 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 S++ D LQK++ G + + P E + L LG+EG GLR T + +A Sbjct: 176 SSVADELQKLYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHGLRSLTDDFKHRLA 235 Query: 253 H---LHMPGIIKALNVSNAAAVALY 274 + M G +++LNV+ A A+ LY Sbjct: 236 ARLVIPMEGQVESLNVAVAGAILLY 260 >gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 245 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 ++L+ + DP N+G I+R+A A + DG+ +++ + + +S G+ H+P R I Sbjct: 104 LILEDIQDPGNLGTIIRTADAANFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDIY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ A+Q+ T LS DS + ++ +AL+LG EG+G+ P+ A + H Sbjct: 164 QVSQAMQQQKIPVLATT-LSQDSIDYKDLSARS-SLALVLGNEGQGISPEMAALADQLIH 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + ++ Sbjct: 222 ISMPGQAESLNVAVAAGILIF 242 >gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] Length = 279 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 16/158 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191 +VLD + DP N+G++LRSA+A + P VL ++++GAL +P+ R Sbjct: 116 LVLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGGKVL-RASAGALLQLPHRRFGPE 174 Query: 192 ----ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIKNDK-IALILGAEGKGLR 241 I +L AL+ + + G Q + L D+ PL E+ K AL+LG EG GL Sbjct: 175 QEKAIDDLDQALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAGLH 234 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 P+ Q T L +++LNV+ AAAV L + + Sbjct: 235 PRLQACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 271 >gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] Length = 345 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + +K+ L+LG E +GL ++ + Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTTLPEKMVLVLGQEYEGLPDAARDPNDVRVN 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLAEWWRQN 343 >gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans] gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 294 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 25/245 (10%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP-------VKTV-PPQTID 102 L+G+H+V A+ + R + K R D DA + KT+ +D Sbjct: 45 LFGLHSVLEAIRSGKRDFHSVFLKKAVENRADSDARIKEILSRIDELGIQKTLLTDDQLD 104 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++ + +H G+ ++ + L + S + +D V DP N+GAI RSA F DG+ Sbjct: 105 RLT-EFQLHNGICMDASALQFSNFEPKTVS---IFVDKVLDPGNLGAIGRSAWYFGADGL 160 Query: 163 ITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------S 213 K P S + + KS+ GALEH+P + N + K+ + G + + + Sbjct: 161 GLVKGRGPKSITPAMIKSSCGALEHLPVQQFLNFNEFRDKIKAAGGELVATCDPGAAEKA 220 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QETATSMAHLHMPGI-IKALNVSNAA 269 S K L+Q + ++LG EG G+ +T S++ + G + +LNVS A Sbjct: 221 GISAKSLDQWTPEKPVGIVLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVA 280 Query: 270 AVALY 274 + L+ Sbjct: 281 GILLH 285 >gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 338 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 25/248 (10%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102 E +YG + A N S I + ++ R L W A + V V + Sbjct: 98 EETRIYGENACQAMFKNRSEAIVRAWFVESVTPRFRNALKWMAANRKAYHV--VDEAELT 155 Query: 103 KIVGKE---------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 K+ G E GL ET +P D V + L+ V +PHN+G I+RS Sbjct: 156 KVSGTEHHGGVCFLIKKRNGLDAETYLKDAPVKDCV------LALEDVGNPHNLGGIMRS 209 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F G+I + + ES ++A G EHI I +L L G+ + S Sbjct: 210 CAHFGVQGVI-LQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRKAGYTIVTTS 268 Query: 214 S-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S L + +K+ L+LG E GL E + G++++LNVS A + Sbjct: 269 SHKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDMSLFVGGSGLVESLNVSVATGIM 328 Query: 273 L--YITQN 278 L + QN Sbjct: 329 LAEWWRQN 336 >gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3] Length = 250 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 7/155 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + QL++ LDH+ DP N+GAI RSA F I+ K + ++ GA Sbjct: 93 KQDQLVLALDHITDPRNLGAIARSAAFFGVKYILIPKMRQVLLTPASVATSQGAFAFSEL 152 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248 + + NL AL+K+ GF I + +K E+ I + K+ L+LG+E KG+ ++ + Sbjct: 153 VLVPNLGQALEKLKEEGFWVICADAKGEK-FEKVIGEYQKVVLLLGSEDKGVSELLKKRS 211 Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFAK 282 + + + +LNVS AA + L N FAK Sbjct: 212 DRVVSISTDTQTLDSLNVSVAAGILL----NGFAK 242 >gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 267 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPY 189 N + +++L+ V DP N+G+I RSA AF D +I SP+ L +SA G++ H+P Sbjct: 116 NWRRVLLLERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTL-RSAMGSVFHVPV 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247 + S+ A + F + D + E ++D KIAL +G EG GL ++ Sbjct: 175 LPFSDTEAAYTFLKQENFWIAAATLDGRPLAEIARRHDLPKIALAIGNEGNGLSSYARKE 234 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + ++ + G ++LN + AA + Y Sbjct: 235 ADATVYIPISGKAESLNAACAAGILCY 261 >gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4] Length = 281 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 19/271 (7%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + +K ++I S+K+ + +KK+ + +K R + + G H V AL Sbjct: 26 VKEKSMKRIDSVKNEQV-------KGWKKLHT--KKGRDKAG--RFLIEGFHLVEEALK- 73 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 I +L T+ + L W+ + + V PQ + +I E QG+A A Sbjct: 74 AKFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETET-PQGIAAVCAIPAP 129 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P++ + LL +D V DP NIG ++R+A A G++ + ++ + +++ G+ Sbjct: 130 PSMTTLSGQFLL--IDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQGS 187 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + H+P IR +L + ++K+ G S + ALI+G EG+G++ + Sbjct: 188 IFHMPVIR-GSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPEFALIVGNEGEGVQSE 246 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + ++ + G ++LNV+ A + LY Sbjct: 247 LLEGSDQNIYIPIYGQAESLNVAVATGILLY 277 >gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 288 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-- 192 + VL+ + +P N+GAI RSA A DGII T + ++ A G + +P+ I Sbjct: 135 IAVLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVPWTYIDA 194 Query: 193 -SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + T ++ +H G+QT ++ + + Q + DK+A+ILG+EG GL +T + Sbjct: 195 HTWQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVDKLAIILGSEGPGLAEQTIAQS 254 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+A+A + Sbjct: 255 DFTIKIPMAAGVDSLNVAAASALAFW 280 >gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEVIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] Length = 345 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVS-GT 241 Query: 195 LTDALQKMHSWGFQTIG----LSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPK 243 D M +G + + SSD+ K L + N+ + L+LG+EG GL + Sbjct: 242 WHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCLVLGSEGNGLSAE 301 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + A + ++ M G ++LNVS A + L++ Q Sbjct: 302 TLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 307 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV ++++VG +H+G +A P L + S+ ++VL+ + D N+G Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A +RSA A + D I+ T + + + G + +P+ R+ DA H+ GF+ Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230 Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + L D+ + +++ D K+AL+ GAE GL+ T A + + M + Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290 Query: 262 ALNVSNAAAVALYIT 276 +LNV+ A AVA + T Sbjct: 291 SLNVAGACAVACWAT 305 >gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 333 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + N Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLPIVS-GN 235 Query: 195 LTDALQKMHSWGFQTIG----LSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPK 243 D + +G + SSD K L + ++ + L+LG+EG GL + Sbjct: 236 WCDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCLVLGSEGNGLSEE 295 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + A + + M GI ++LNVS A + L++ Q Sbjct: 296 TVQ-ACDLVSIPMEGIFESLNVSVAGGIFLFMLQ 328 >gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 265 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 10/240 (4%) Query: 37 NQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 N + RH LFL G+ ALN+ F L+ + + L R V Sbjct: 22 NYRKRH-----GLFLVEGLRATEEALNSDYLVEF-LVVSDDFLERHREKIKEYENIKVYE 75 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSA 154 VP + D + EA QG+ + + + L ++ L+V LD + DP NIG I+R+A Sbjct: 76 VPRKVYDTLSDTEA-PQGI-MAVVRMKNHELTSIYEDNFLIVALDGIKDPGNIGTIIRTA 133 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GI+ K + + +S G++ H+P I +L L ++ + + Sbjct: 134 DAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQKRAKIVVTHL 193 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K + L+ G+E +G+ P+ + +T + + MPG ++LNV+ A + L+ Sbjct: 194 GAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLNVAVAGGIVLF 253 >gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 362 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 13/173 (7%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL +T +P D V + L+ V +PHN+GAI+RS F +G++ P Sbjct: 198 RQGLDAQTYLQSAPAKDCV------LALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DP 248 Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ES ++A G EHI I + L G+ + SS L Q K Sbjct: 249 ALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGTTLAQAKLPAK 308 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + L+LG E GL + + G +++LNVS A + L + QN Sbjct: 309 MVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLADWWRQNQ 361 >gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 124 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 60/113 (53%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 5 VIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLY 64 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 65 QSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 117 >gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 277 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 111 HQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 H+GL + PL D + L + LD V +PHN GAILRSA F ++ Sbjct: 102 HEGLVADVLRAPVVPLAQWLADLEQGPVLALWLDGVGNPHNFGAILRSAAHFGVKALLLP 161 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + S A+ A G E +P +++ A+ ++ S GF + + + Sbjct: 162 AGSTLALSGAAARVAEGGAESVPLVQLPETAQAMAQLRSAGFGLAATLVEGGDDVFRASL 221 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ ++GAEG+G+ + G +++LNV++A AV L Sbjct: 222 PERLVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLL 269 >gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555] gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016] gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 266 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%) Query: 129 VRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 +++ Q +L D + DP N+G I+RSA A GIITTK + ++ G++ +I Sbjct: 107 IKDEQGFYILADRIQDPGNMGTIIRSAHASGALGIITTKGTVDVYNEKTLRATMGSIFYI 166 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P I+ NL + + + GF+ I S DS KI + +G EG GL ++ Sbjct: 167 PIIQDENL-EKVSTLRQMGFKLISSSLDSDINFYDMDLRGKIIIAIGNEGNGLLQDVKKI 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ MPG ++LN + AA++ ++ Sbjct: 226 SDIEVNIPMPGNAESLNAAVAASIMMF 252 >gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 257 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 19/267 (7%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIF 69 +I ++ D +LR +RD K R + E LF+ G + +P Sbjct: 3 EIIAITDPSDVRLRL-YRDVKD--------RDLTGREGLFMAEGRVVIERLFVSPWCVCI 53 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDA 128 +L T + L LD + PV V +D++ G A+H+G LAL + + Sbjct: 54 SVLTTPDRLKMLDI--SQAGDVPVYVVDQAIMDQVAGF-AIHRGYLALGRYSGPAGLGEV 110 Query: 129 VRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ ++ ++ L + + N+G ++R+A AF D ++ + + G + + Sbjct: 111 LKPGRVRVLALSTIANTDNMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQV 170 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P+IR+ NL +AL + G LS L+ ++ A + GAEG GL P+ Sbjct: 171 PHIRVPNLVEALT---AHGVAPYALSPSGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAA 227 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 TS+ + M G +LNV+ + + LY Sbjct: 228 CTSV-RIDMHGGFDSLNVATTSGIVLY 253 >gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GA++RS F G++ + + ES ++A G EH+ I Sbjct: 214 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ DA+++ G+ + SS + PL + K+ L+LG E GL +A Sbjct: 273 SVLDAIEQFRKAGYSIVTTSSHAGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC 13124] Length = 257 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+R+A A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + N D ++ + G++ + S K +E K+ + +G EG G+ + + A Sbjct: 165 IVE-DNSLDFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 274 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 15/185 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL------LSPTLDAVRNSQLLMVLDHVND 143 PV V P+ +++ G VH+G A+ PL L+P VR + V + + D Sbjct: 78 PVYAVTPELAERVTGYH-VHRGALAAMRRRPLPAVDTLLAPATGDVRR---VAVFEDIVD 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA R+A A D ++ T R + K + G++ H+P+ R+ + D L + Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLG 193 Query: 204 SWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF T L SD L+ + ++K+ALI G EG GL + A + + M + Sbjct: 194 AAGFTTAALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRIPMDAGV 253 Query: 261 KALNV 265 +LNV Sbjct: 254 DSLNV 258 >gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] Length = 265 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ +K R T F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQT--KKERDTKGL--FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKESNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 SVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 265 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 233 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIG 148 F V+ + + K+ A HQG E S ++ + S+ +++VLDH+ D +N+G Sbjct: 41 FKVEILSNLELSKLTN-NANHQGFVAELDFTYSD-INKIYESKPKIVLVLDHIMDTYNLG 98 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA A I+ K ++ + K +SG I + ++S+L L K+ + Sbjct: 99 AIIRSANAAGIKDIVMPKENCADITSNVLKVSSGGFIGINFYKVSSLNAFLNKLKKHSYW 158 Query: 209 TIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G D K N +A ILG E KG+ H+ G +++LNVS Sbjct: 159 IYGSMLDKNSTSYYSAKYNFPMAFILGNEEKGISKSALVEVDEKIHIPQSGSVESLNVSV 218 Query: 268 AAAVALY 274 AA + L+ Sbjct: 219 AAGILLF 225 >gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] Length = 320 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 19/179 (10%) Query: 111 HQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ L+ L PT++ V + + + LD V DP N+GA+LRSA DGI+ Sbjct: 138 HQGVLLDAEALEIPTVEELPRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVV 197 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S +A ++K+++GA+E R + L + G+ +G ++D P + I Sbjct: 198 CTKNSAPFNATVSKASAGAMEAQVVHRTGVMHRFLARARDDGWDVVGAAAD---PRAENI 254 Query: 225 KNDKIA----LILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALNVSNAAAVALY 274 ++A L++G EG G+R + + + G+ + +LNVS AA + ++ Sbjct: 255 HAFEVAAPTVLVVGNEGVGIRTNVRRACNRLVSIPR-GVSATDGVDSLNVSVAAGILIH 312 >gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94] gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] Length = 249 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 13/245 (5%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R ++ + + L + + SA Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58 Query: 61 LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116 S LL +N L L + LP PV +VP +D + G VH+G LA+ Sbjct: 59 FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + GA +PY + D + GF + L+ + + + + ++ AL+LG Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232 Query: 236 EGKGL 240 EG+GL Sbjct: 233 EGEGL 237 >gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma proteobacterium NOR51-B] gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma proteobacterium NOR51-B] Length = 250 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 70/143 (48%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V +P N+G I+RSAVA GI+ ++ S ++ K+++G L P I Sbjct: 105 VLALDGVTNPQNVGMIIRSAVASGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCET 164 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L AL++ G + L + L + + +LG E G+ T+ AT + Sbjct: 165 LAPALRQCLENGLDIVALDGAAPDSLFGDRPSRAAVYVLGGETHGVSDATRSLATRSLSI 224 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 M G +++LNV+ AA+ Y Q Sbjct: 225 PMAGGVESLNVAVTAALIGYAAQ 247 >gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] Length = 326 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 14/160 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI---- 187 S +++VLD ++DP N GAILRSA C ++ + R + S +++++ GALE + Sbjct: 169 SPVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTAPLSPAVSRASVGALEVMVAND 228 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 ++ NL + L +G++ +G SS ++ + + L++G E +GLR ++ Sbjct: 229 KLMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSDGQPTILVMGNEHRGLRKHIRQ 288 Query: 247 TATSMAHLHMPG-------IIKALNVSNAAAVALYITQNH 279 + + +PG + +LNVS A+A+ LY +H Sbjct: 289 CCQDV--VIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326 >gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 246 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD V DP N+G I+R+A+A G++ + +A + ++ GAL H+P + + + Sbjct: 104 FVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRATQGALFHLP-VYMGD 162 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L ++ + G G S P +Q ++ AL+LG EG+G++ + AT + Sbjct: 163 LVTWIEALKESGIPVYGTSLQDATPHDQFHSQEQFALLLGNEGEGVQSHLLDAATENLFI 222 Query: 255 HMPGIIKALNVSNAAAVALY 274 ++LNVS AA + L+ Sbjct: 223 RQNRKAESLNVSVAAGILLF 242 >gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] Length = 368 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 32/289 (11%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 ISK+ SE+ L++ H ++ D ++++ Q E +YG + A N Sbjct: 94 ISKQDSEE---LENDHGGISGKSQIDPEQLRKQRQ--------EETRIYGENACQAMFKN 142 Query: 64 PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--- 116 I + ++ R L W A + V V + ++K G E H G+ Sbjct: 143 RPDGIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDAEELEKASGTEH-HGGVCFIIK 199 Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L ++ ++ L+ V +PHN+G I+RS F G+I + ES Sbjct: 200 KRGGMQAEAYLQEAADTDCVLALEDVGNPHNLGGIMRSCAHFGIQGVI-LQDAGMLESGA 258 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIAL 231 ++A G EH+ I T L+K G+ + SS Q+I K+ L Sbjct: 259 AIRTAEGGAEHVKAIDADGFTPTLEKFRQAGYTIVTTSSHKGS---QDIAKVQLPKKMVL 315 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 +LG E GL T + ++ G +++LNVS A + L + +QN Sbjct: 316 VLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 364 >gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13] Length = 252 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 Q + G H V AL + +++ +++ +WD N H + VP + K Sbjct: 25 EQSGTFIIEGFHLVEEALK-VDNLVEEIIISEDRSIPSEWDLN--HVELIYAVP--NVLK 79 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + QG+A + L N ++L+ LD+V DP N+G ++R+A A D +I Sbjct: 80 EISETETPQGVAAICRIPVQHDLTLQPNQKILL-LDNVQDPGNVGTMIRTADAAGMDMVI 138 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + + S+ + +S G++ H+P R +L +++ G S + P ++ Sbjct: 139 LGEGCADLYSSKVIRSTQGSIFHLPIAR-GDLKTYIKQCKELQTPVYGTSLQNGVPFQEV 197 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ ALILG EGKG+ + E ++ + G ++LNV AA + +Y Sbjct: 198 QSSNTFALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMY 248 >gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 286 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+++ V DP N G ++R A AF D ++ T + +++ G++ H+P I Sbjct: 122 RLVVICAQVRDPGNAGTVVRCADAFGADAVVLTHGSVDITNPKTVRASVGSIFHLPIISG 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 LT A++ H+ G Q + + S +P++ ++ A ++G E GL E A Sbjct: 182 VELTGAIEWAHASGLQVLA-ADGSGQPVDLMAGAGQLGQPTAWLMGNEAWGLPRHDLELA 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A + M G ++LN+S AAA+ LY T Sbjct: 241 DRVAAVPMWGAAESLNLSTAAAICLYAT 268 >gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 271 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 23/258 (8%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 Q ++K R Q + G H V AL + + + + + + A HP V Sbjct: 19 QLLSRKGREEQQ--RFLVEGAHLVEEALKSGAEVVTVIYDQQRDMDPACQRALANHPEAV 76 Query: 94 KTVP-PQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ---LLMVLDHVNDPHN 146 + + P+T+ + + QG+ E TA + +D R Q LL+ LD + DP N Sbjct: 77 QVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAKWVDQKREEQGSLLLLFLDEIQDPGN 136 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ILR+A A + DG++ + + ++ GAL IP + +L D + + G Sbjct: 137 LGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATMGALFRIP-VFTQSLVDTADEWKAKG 195 Query: 207 FQTIGLSSDSKKPLEQ-EIKNDK------IALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + +SS LEQ + D+ AL++G EG+G+ + A H+ + G Sbjct: 196 GRVL-ISS-----LEQNSVSYDEADYAGLTALVIGNEGRGVSKEMFAKADQFVHIPLYGG 249 Query: 260 IKALNVSNAAAVALYITQ 277 ++LN + AA + +Y Q Sbjct: 250 AESLNAAVAAGIFVYEAQ 267 >gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232] gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 245 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 269 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 27/279 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++ I +K H K R H Y F+ G+ VS A Sbjct: 1 MNYIQSSQNSTIKDIKSLHLKKNRDAHGLY-------------------FVEGIRFVSDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVK----TVPPQTIDKIVGKEAVHQGLAL 116 ++N + I +++ ++ L L+ + L ++ P+ I + V QG+ L Sbjct: 42 IDN-GQSIAKIIISEK-LEGLNGGSELIEKVKGACSDISLVPEKIFREVSDTQTPQGI-L 98 Query: 117 ETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + D V +++LD + DP N G I+R+A A ++ +K S Sbjct: 99 AVIKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S G++ HIP N+T+ ++ + ++ I K QE + A+I+G Sbjct: 159 VLRSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E G+ +T A S+ + MPG ++LN S AA+V +Y Sbjct: 219 EANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIY 257 >gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] Length = 265 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W] gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. A1055] gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W] Length = 254 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes MGAS315] gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1] gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] Length = 265 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLKEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 270 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P L + R ++ ++V+D V D NIGAI RSA A D ++ T+ + + Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKND-KIALILGAE 236 + G++ + + I +L ++ GF+T+ L+ DS + +K + K+A+I+G E Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTVAMALTDDSISIDDPVLKTEPKLAIIMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G GL +T A + + M + +LNV+ AA+VA + Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261 >gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71] gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71] Length = 257 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 6/171 (3%) Query: 112 QGLALETAPLLSPTLDA-VRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QG+AL+ LDA +R+ Q ++ LD V +P N+G ++RSA A G+I Sbjct: 83 QGVALDVYCAAMGELDAYLRDMSDAPQRILALDGVTNPQNMGMVIRSAAAAGIQGLIYAD 142 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIK 225 R +P+ ++ K+++G + P +R + D +++ GF L +D ++ L + + Sbjct: 143 RGNPALGPLVIKASAGTVFRAPLLRCQTVMDGARQLSDAGFTLYRLQADGRRSLFDGQDF 202 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LG E G+ + + M +++LNV+ + A+ YI Sbjct: 203 AQRALFVLGGESDGISEALRGLPGENLSIPMRNGVESLNVAVSGALVAYIA 253 >gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] Length = 263 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 124 PTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVL 176 PT D V + +VL+++ DP N+G I+R+A AF G+ TK YSP + Sbjct: 99 PTYDLVHFNIEAGHYLVLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPK----V 154 Query: 177 AKSASGALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 +S +L H+P + I D L++ + T + KP+ +K+A+I+ Sbjct: 155 VRSTMSSLFHVPIVIEEEIDTYMDFLKQKGVTLYTTALIP--GAKPIYDVTFEEKVAIII 212 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G EG G+ + +E + + MPG ++LN + A ++ +Y Sbjct: 213 GNEGNGVSERVKEASDHTVIIPMPGAAESLNAAIATSICMY 253 >gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074] gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074] gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074] Length = 267 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V P+ +++ G VH+G A+E PL P D + ++ + VL+ + D N+GA Sbjct: 78 PVHLVTPELAEQVTGYH-VHRGALAAMERKPLPDPA-DILTTARRVAVLEDIVDHANVGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 R+A A D ++ + R + K + GA+ +P+ R+ + + GF T Sbjct: 136 AFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGAGLLGRHGFLT 195 Query: 210 IGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ + +K+AL+ G EG GL P A + + M I +LNV Sbjct: 196 AAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWVRIPMDAGIDSLNV 254 >gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 267 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R ++ + V++ V D NIGAI RSA A D I+ T+ + + + G++ Sbjct: 114 EICRGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKGLRPK 243 IP+ + L + ++H GF+T+ ++ K ++ I K+A+++G EG GLR + Sbjct: 174 IPW---AWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGLRNE 230 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T A + + M + +LNV+ A+A+A + Sbjct: 231 TITEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] Length = 245 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0012] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 270 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 2/167 (1%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VH+G LA P P + ++ ++VL+ + D N+GAI RSA A D ++ + R Sbjct: 95 VHRGALAALERPPARPAATVLAGARRVVVLEDLVDHTNVGAIFRSAAALGWDAVLLSPRC 154 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND 227 + K + GA+ +P+ R+ + + + GF + ++ + P+++ + Sbjct: 155 ADPLYRRSIKVSMGAVFRLPWARVDDWASTPELLADAGFTAVAMTLGEGAVPIDEVDTDR 214 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++G+EG GL + + A + M I +LNV+ + AVA + Sbjct: 215 PLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAASVAVACW 261 >gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 260 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +V D V DP N+G I+R+ A DGII TK + +S G++ ++P Sbjct: 112 FFLVCDKVQDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDD 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++K+ G + S + K +E KI L +G EG G+ + E A+ Sbjct: 172 EDFSIIKKLKDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVK 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ L+ Sbjct: 232 IPMPGGAESLNVAIATSIILF 252 >gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + G + L P L + ++ + VL+ + D N+GAI Sbjct: 79 IPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGAI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTD----ALQKMHSW 205 RSA A D ++ T + + G + +P+ RI S L+ ++ + Sbjct: 139 FRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRKL 198 Query: 206 GFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T+ ++ + K Q + +K+A++LG+EG GL P T A + M + + Sbjct: 199 GFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVDS 258 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA + Sbjct: 259 LNVAAASAVAFW 270 >gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG] gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11] gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98] gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG] gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11] gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98] gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX2137] gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0043] gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1346] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] Length = 372 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 13/172 (7%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL ET +P D V + L+ V +PHN+GAI+R+ F +G++ P Sbjct: 207 RQGLDAETYLQQAPKQDCV------LALEEVGNPHNLGAIMRTCAHFGINGVLLQ---DP 257 Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ES ++A G EHI I + L + G+ + SS L + K Sbjct: 258 AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRNAGYTIVTTSSHKGTSLSKAELPAK 317 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + L+LG E GL + + G +++LNVS A + L + QN Sbjct: 318 MVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 369 >gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] Length = 352 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GA++RS F G++ + + ES ++A G EH+ I Sbjct: 205 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 263 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ +A+++ S G+ + SS PL + K+ L+LG E GL +A Sbjct: 264 SVLEAIEQFRSAGYTIVTTSSHEGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 323 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 324 INGTGNVESLNVSVATGVLLAEWWRQN 350 >gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] Length = 269 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 9/195 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G L P P + R ++ ++V+ V D NIGAI Sbjct: 78 LPVYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T + + + G++ +P+ + L+++ GF+T Sbjct: 138 FRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDR---PLEQLKELGFRTA 194 Query: 211 GLS-SDSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ +D PL+ +K + ++AL++G EG GL E A + + M + +LNV+ Sbjct: 195 AMALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAA 254 Query: 268 AAAVALY---ITQNH 279 A+AVA + +NH Sbjct: 255 ASAVAFWELRCGENH 269 >gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 270 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 12/253 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALARLDWDA 85 D++ + S +++ S + GV V A+ P LL T L L D Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPR----ALLGTDRRLTELGTDL 72 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + P + + ++VG LA + P DA+ ++ + VL+ VND Sbjct: 73 DAVDA-PFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHE 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A D +I + + + G +P+ R + D L + Sbjct: 132 NLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDK 191 Query: 206 GFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GFQ + ++ +D+ + +K+A ++GAEG GL + + + M Sbjct: 192 GFQLLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTD 251 Query: 262 ALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 252 SLNVATAAALAFY 264 >gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] Length = 253 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 5/137 (3%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+G ILRS++AF C GI ++ + + +S++GA +P+ R N +D Sbjct: 112 LDKIQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAFFKVPF-RKRNFSD 170 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++ M + + S +K+P + + L+ G EG+G+ + + + S +++P Sbjct: 171 IVRDMDT-SLRVFSFSPRAKEPFFLHNYDGRCLLVFGNEGRGISSEIE--SKSYKRVYIP 227 Query: 258 GI-IKALNVSNAAAVAL 273 +++LNV+ + L Sbjct: 228 TQNVESLNVAMCVNIVL 244 >gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. CNEVA-9066] gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Western North America USA6153] gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Kruger B] gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Vollum] gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Australia 94] gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames] gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne] Length = 254 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLKEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1342] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str. 13] gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13] gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] Length = 257 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+R+A A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D ++ + G++ + S K +E K+ + +G EG G+ + + A Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli 95/1000] gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli 95/1000] Length = 237 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%) Query: 93 VKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 +K V + ++ IVGK +V + + L L+ ++ L+ +LD + D HN+ Sbjct: 45 IKNVDKREMESIVGKVYSIAASVKENAEIGIDVFLDRALEKT-STPLIFILDSITDVHNL 103 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A F GII K + + + + ++GA H+P +NL ++ M GF Sbjct: 104 GAIIRNAYFFDLGGIIIPKDNAAPINEKVYEISAGAAYHLPISIETNLNRVIEIMKDKGF 163 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S LE + A+ILG E G+R ++ + + +LNVS Sbjct: 164 WVYYASEKGDTSLENFKFDTPTAIILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSA 223 Query: 268 AAAVALY 274 A+A+ Y Sbjct: 224 ASAIISY 230 >gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 251 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 117/251 (46%), Gaps = 16/251 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ +K R + LFL G H V A+ + + + +L+ + W+ Sbjct: 13 KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV T+ + + + + QG+A LS L+ V+ + +++D V DP N Sbjct: 67 ---GVPV-TIVTEAVMRAISSTETPQGIA-AVCRQLSTELEGVKTA---LLIDAVQDPGN 118 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A + D +I + + + + ++ G+L H+P ++ +L + + G Sbjct: 119 LGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++ ++ AL++G EG G+RP T ++ + G ++LNV+ Sbjct: 178 IPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237 Query: 267 NAAAVALYITQ 277 AA + LY Q Sbjct: 238 VAAGILLYSLQ 248 >gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 229 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 2/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG ++ ++ S+ +++L ++D NIGAI+R+A A DG++ + Sbjct: 61 HQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFIGKNLA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ES V +S+SGA +P ++ AL ++ F+ G ++ K Sbjct: 121 QESIV--RSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKKV 178 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LI+G+EG GL K + + M +LNVS A A+ Sbjct: 179 LIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAI 219 >gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1] gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3] gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1] gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1] gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1] gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3] gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1] gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1] gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX4000] gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2141] gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0031] gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0312] gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0645] gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1302] gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309B] gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309A] gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62] gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 251 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 37/276 (13%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S K+++ +L++ HR +K R Q L G H V A+N+ + + L++ Sbjct: 5 STKNTYVKELKKLHR---------KKGRQDQQ--RYLLEGFHLVEEAVNSQAEVVDILIS 53 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + A +W A + T + + + ++ QG+ A + P + +R Sbjct: 54 PRGAK---EWAAWIEEQALDVTYVSEEVMAAISEQPTPQGI---MAVVALPRVKEMRVKG 107 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD+V DP N+G ++R+A A G+ + + + +S G+ HI I+ Sbjct: 108 KWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSMQGSHFHIE-IQNG 166 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI------KNDKIALILGAEGKGLRPKTQET 247 + D Q F+ +G+ + EQ + K D++ALI+G EG+G+ + Sbjct: 167 TIQDICQV-----FKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGVAKEI--L 219 Query: 248 ATSMAHLHMP--GIIKALNVSNAAAVALYITQNHFA 281 A + A+L++P G ++LNV AA + +Y HF+ Sbjct: 220 AQTDANLYIPIYGKAESLNVGIAAGILMY----HFS 251 >gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188] gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188] gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1341] gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0630] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101] Length = 257 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+R+A A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D ++ + G++ + S K +E K+ + +G EG G+ + + A Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 260 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 9/236 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 H ++ + G V AL + + IF + K+ D + L + V Q Sbjct: 23 HRTKNNQFLIEGFRFVEEALKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQ 82 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K++ QG+ TA + + L+ +++D V DP N+G I+R+A A Sbjct: 83 VL-KLLSDTETPQGI---TAVVDNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKA 138 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I TK + +S G++ H+P I+ ++L + + + GF + S ++ K Sbjct: 139 LGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDL-NKVNFLKEKGFNLVASSLNTDKN 197 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++K KI + +G EG G+ + A + MPG ++LNVS AA V ++ Sbjct: 198 FYDVDLKGKKI-IAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMF 252 >gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 276 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 6/218 (2%) Query: 62 NNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 N +R + L T++A R D L V V + I K + GL + Sbjct: 47 NGEARPVHDLFYTEDAAERYQHVIDRALTAGVSVALVTDRAI-KALSDTVTPPGLVAVSD 105 Query: 120 PLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L P AV + ++LL V VN+P N G ++R A A D I + + + Sbjct: 106 LLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVR 165 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAE 236 S++G+L H+P +R + ++++ + G Q + ++D + L++ E+ + A + G E Sbjct: 166 SSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGNE 225 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL P A + + G ++LN++ AAA+ LY Sbjct: 226 AHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263 >gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4244] Length = 258 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 277 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 24/194 (12%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL-----------------ALETAPLLSPTLDAVRNSQL 134 PV V P +K+ G VH+G + T P +P AVR Sbjct: 75 PVYVVEPALAEKVTGYH-VHRGALASMQRTPLPTAADVLRGVGTMPSSAPREAAVRR--- 130 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + V + + D N+GA R+A A D ++ T R + K + GA+ H+P+ R+++ Sbjct: 131 VAVFEDLVDHANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTS 190 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSM 251 GF T L D K +E+ +++K+ L+LG EG GL +A Sbjct: 191 WPQDAGIFREHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250 Query: 252 AHLHMPGIIKALNV 265 + M G + +LNV Sbjct: 251 VRIPMSGGVDSLNV 264 >gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10] gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens MLS10] Length = 251 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 21/249 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 +KK+ + +K R S F+ G H + A+ + + I +L+ +N W+ P Sbjct: 15 WKKLHT--KKGRDKSGL--FFIEGDHLIEEAIRS-AITIKELILEENQSLPEAWED--PE 67 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV V ++++ E QG A E PL++ LD R + +D V DP N+ Sbjct: 68 -VPVVWVTQPVLNELCETET-PQGFAAVCEKPPLVNLPLDDGR----FLFIDGVQDPGNL 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++R+A A G++ + + +S G+L HIP ++ +L +A++ Sbjct: 122 GAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFHIPVQKM-DLEEAVEICKEANV 180 Query: 208 QTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G L + LE + D ALI+G EG G+R + E ++ + G ++LNV Sbjct: 181 PVFGTSLQGSTFNALEPQ---DTFALIMGNEGSGVRARLLEMTDQNLYIPIYGKAESLNV 237 Query: 266 SNAAAVALY 274 + A + LY Sbjct: 238 AVACGIVLY 246 >gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 253 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 14/242 (5%) Query: 37 NQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 + K R + + LF+ G + +P + +L T L L +LP PV Sbjct: 18 DVKDRDLTGRQGLFMAEGKVVLERLFTSPVAETVSVLTTPERLGGL---VSLPDA-PVYV 73 Query: 96 VPPQTIDKIVGKEAVHQG-LAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 VP ++++ G +H+G LAL AP + + + ++ L + + N+G ++R+ Sbjct: 74 VPQGVMNQVAGFP-IHRGYLALGRYAPKQALSERVSGTTARVLALYGIANTDNMGGLMRN 132 Query: 154 AVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A AF D ++ T P + S GALE +P+ R ++ L+ + G GL Sbjct: 133 AAAFGADAVLLDTTCCDPLYRKAIRVSVGGALE-VPHYRTDDMVGTLRGL---GLTPYGL 188 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S LE+ + + + A++ GAEG GL P A + M G +LNV+ + + Sbjct: 189 SPSGAVTLEEVMPDPRSAVLFGAEGPGL-PAELMAACRTVRIDMHGGFDSLNVATTSGIV 247 Query: 273 LY 274 LY Sbjct: 248 LY 249 >gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0017] Length = 258 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76] gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] Length = 258 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] Length = 257 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ +L++++D V DP N+G I+R+A A GI+ TK + +S G++ +IP Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D ++ + G++ + S K +E K+ + +G EG G+ + + A Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249 >gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis] gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis] Length = 301 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 43/271 (15%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALA 79 L R+H + ++ + + TS F++G+ AL++ RK+F++ + N Sbjct: 38 LTRHHSGSTRYETKSTRKSGTSSRRE-FIFGIGPCVLALSSGRRKVFKIYMNEEANNTTR 96 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 L W FPV ++ + +++ + ++ +L L++ LD Sbjct: 97 ILLWK------FPV-SIFVILMKRMMSYKGINHIASLHP---------------LVLALD 134 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N GAI+R++ D I+ K+ S S V++K+++GA+E + +L L Sbjct: 135 EIQDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKASAGAMEVFNVYQTPDLPKFL 194 Query: 200 QKMHSWGFQTIG----LSSDS-KKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSM 251 Q+ + G+ +G ++ DS +P+ E + + L+LG EG+GLR Q+ T + Sbjct: 195 QERAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTV-LVLGNEGRGLRNTVQQQCTQL 253 Query: 252 AHLH-------MPGI-IKALNVSNAAAVALY 274 ++ I + + NVS AA + ++ Sbjct: 254 LSIYPHQAQNSFQSIDLDSFNVSVAAGILVF 284 >gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] Length = 267 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + L++VLD + DP N+G I+R A A G+I + + + +S G+L H+P Sbjct: 110 MRENGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L L + G + + + K+ + +++G+EG+G+ P+ Sbjct: 170 VLE-GELLSILPEARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIV 228 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + MPG ++LN + AA+V +Y + Q H+A Sbjct: 229 DDAIRIPMPGQAESLNAAMAASVLMYEALRQRHYA 263 >gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 280 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + VL++V +P NIGAI RSA A D ++ T S A+ + G + IP+ Sbjct: 123 IAVLENVMNPTNIGAIFRSAAALGMDAVLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPK 182 Query: 195 LTD----ALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 D L+ + S GFQT + S D K L E K+A+ILG EG GL Sbjct: 183 NADLSCGGLEALRSLGFQTAAMALKEDSVSIDDPKLLAAE----KLAVILGTEGDGLASA 238 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 T + M + +LNV+ A+AVA + +T+N Sbjct: 239 TIGGCDHTVMIPMAHGVDSLNVAAASAVAFWELTKNR 275 >gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 199 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 1/140 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GA++RS F G++ + + ES ++A G EH+ I Sbjct: 52 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 110 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ DA+++ G+ + SS + PL + K+ L+LG E GL +A Sbjct: 111 SVLDAIEQFRKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 170 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + G +++LNVS A V L Sbjct: 171 IDGTGNVESLNVSVATGVLL 190 >gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] Length = 265 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 117/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] Length = 264 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE 185 RN+ L++VLD V DP N+G I+RSA A D ++ K Y+P +S G+L Sbjct: 112 RNNSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKT----VRSTMGSLF 167 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+P I ++L + L + S G + +G S + L++G E +GL + Sbjct: 168 HLPIIE-ADLAELLPEAQSKGIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVR 226 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA V LY Sbjct: 227 LAVDESVIIPMQGEAESLNVAMAATVLLY 255 >gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] Length = 141 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 64/124 (51%) Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A II K + ++++ A GA +++P I ++NL L+ + G + Sbjct: 1 MRTADVAGIQAIIVPKNNAVKLTSIVHAVACGAADNVPLIEVTNLARTLRWLQEQGVWIV 60 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G +S++ L + +A + G+EG GLR T+ET + + G IK+LNVS A Sbjct: 61 GTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGKIKSLNVSVATG 120 Query: 271 VALY 274 + LY Sbjct: 121 ICLY 124 >gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 276 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LL V VN+P N G ++R A A D I + + +S++G+L H+P Sbjct: 117 QETRLLAVPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPV 176 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQET 247 +R + ++++ + G Q + ++D + L++ E+ + A + G E GL P Sbjct: 177 VRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQ 236 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LN++ AAA+ LY Sbjct: 237 ADHRVRIPIHGRAESLNLATAAAICLY 263 >gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] Length = 347 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 10/169 (5%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+++ET +P D V + L+ V +PHN+G I+RS F G+I + E Sbjct: 183 GMSVETYLQQAPATDCV------LALEDVGNPHNLGGIMRSCAHFGVQGVI-LQDAGVVE 235 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231 S ++A G EHI I L++ L + G+ + SS + + + K+ L Sbjct: 236 SGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQAGYTIVTTSSHKGSQDISKAKLPAKMVL 295 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 +LG E GL ++ G +++LNVS A + L + QN Sbjct: 296 VLGQERDGLSDSVWNEGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQN 344 >gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 258 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 11/197 (5%) Query: 82 DWDANLPHPFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 D+ AN + PV V P+T+ ++IVG H + P S TLDA+ N +++LD Sbjct: 64 DFLAN--YTIPVAYVAPKTVLEQIVGHRLHHNVMMHGVRPKES-TLDALGNH--IIMLDE 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDAL 199 +++ NIG+I RSA A G + R P A A S G + + + R N+ + + Sbjct: 119 ISNTDNIGSIARSAAALDV-GSLLLPRQGPHPYARRALRVSMGHIGKLKFHRYDNIKETI 177 Query: 200 QKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 QK+ G++ ++ DS PL Q K AL++G E G+ + + + M Sbjct: 178 QKLKKMGYRIFAAEVTKDS-TPLSQVRVPGKWALLMGHEQLGISDEILALCDEVVTIEME 236 Query: 258 GIIKALNVSNAAAVALY 274 IK+ NV+ AA++ +Y Sbjct: 237 EGIKSFNVAVAASIMMY 253 >gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] Length = 254 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 117/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305] gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305] Length = 332 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG ++ A I +L AT +L D + L H V + + Sbjct: 91 NRAEEMKVYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEM 150 Query: 102 DKIVGKEAVHQG---LALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +K+ G E H G L ++ AP+ S L R L++LD+VN+ N+G I+R+ Sbjct: 151 EKVTGTE--HHGDVCLLIKKAPVFSLEGYLQIARARDCLVLLDNVNNAQNVGGIIRTCAF 208 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + GIIT + SA A+ A G LE + + + ALQ++ + G+Q I L+ Sbjct: 209 YGVKGIITESNDRLNSSAA-ARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQK 267 Query: 217 KKPLEQEIK-NDKIALIL 233 + P +I +K+ +L Sbjct: 268 QAPTLTKIALAEKVVFVL 285 >gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM 14977] gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM 14977] Length = 214 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++++V+ PHN+ AILR+A A G+ +P+ SG E Y Sbjct: 16 RQPDLTVLMENVHKPHNLSAILRTADAV---GVYEAHAVNPTGGVPTFHDTSGGSEKWVY 72 Query: 190 IRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 +R+ N+ AL+ + GF + + +E+ + A++LGAE G+ P+ E Sbjct: 73 LRVHPNVEAALEHLKGRGFTVYAANLSERAVDYREVDYTRPSAVLLGAEKWGVSPRAAEL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + + M G++++LNVS AAAV L+ Q Sbjct: 133 ADADVIIPMMGMVQSLNVSVAAAVILFEAQ 162 >gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 276 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 10/196 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V + + ++ G + +H+GL A + AP S + V + L +L+ V D NIG+ Sbjct: 81 PVYEVTREVLAEVAGFD-MHRGLVAAADRAPEYS-VGEVVDGASTLCILEGVGDHENIGS 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205 I R+A DG++ + + + + G + +PY + +N L + Sbjct: 139 IFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPYAHMEGKTTNWQHGLAYLQEK 198 Query: 206 GFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GFQ I L+ + + Q++ + K A+++GAEG GL A + M +L Sbjct: 199 GFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEHAMRATDVRARIPMQPGTDSL 258 Query: 264 NVSNAAAVALYITQNH 279 NV+ AAA+ Y H Sbjct: 259 NVATAAAIGFYEALRH 274 >gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 272 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 75/145 (51%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + ++VLD + DP N+G I+R+A D II TK ++ ++ GA+ H+P Sbjct: 118 KENPFIVVLDEIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPI 177 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I+ +N + + + + + + + ++ K Q N+ IA+I+G E +G+ P Sbjct: 178 IQSNNNEEWIYYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVD 237 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G I++LN S AA + +Y Sbjct: 238 ERVKIPILGKIESLNASVAAGILIY 262 >gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 253 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + P N+G ILR+A A DGI+ R S ++ K+++G H P +R Sbjct: 106 VLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVIKASAGVAFHAPVLRAQT 165 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A + + G+ L + +++ + + + +LG+E GL Q + Sbjct: 166 AGHAAELLTEAGYPLYALEAGAQESIYEADFGSRAVFVLGSETAGLSEDVQTRIAQSVAI 225 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LNV++AAAV + Sbjct: 226 PMRGGVESLNVASAAAVLCF 245 >gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 251 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 75/143 (52%), Gaps = 4/143 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S +++LD + DP NIG I+R+A +FS + I +K + S + ++ G++ + +++ Sbjct: 109 SDKILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVK 168 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D + K+ S G++ ++ + ++K+ALILG E G+ + Sbjct: 169 L----DDISKLKSEGYKIYASCLENAISSKSAFTDEKMALILGNESVGISEDLINQSDKK 224 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ A A+ +Y Sbjct: 225 IKIDMTGNAQSLNVATAGAILIY 247 >gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI 0517] gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI 0517] Length = 573 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 97/318 (30%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84 S P + F+YG V+AA+ RK+ L ++++ W+ Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135 A + H P KT T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 291 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 345 Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160 ++LD + DP N+GAI RSA F D Sbjct: 346 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 405 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211 I + + S S V+ K+A+GA E IP + + +++ + + + W F T+ Sbjct: 406 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 465 Query: 212 LSSDSKKPL-------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 K P+ E+ L+LG EG GL+ K + A S + +PG Sbjct: 466 NDYTRKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSDNI 523 Query: 260 ------IKALNVSNAAAV 271 + +LNVS A+A+ Sbjct: 524 RDDTAGVSSLNVSVASAL 541 >gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5] gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5] gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0027] Length = 258 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 4/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M G ++LNV+ AA V ++ +N Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFEN 256 >gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 283 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 12/199 (6%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV ++++VG +H+G A+ P +P + ++++ +++L+ + D N+ Sbjct: 86 PIPVFVASEDLLERLVGFH-LHRGAIAAMLRKPAPNPR-EILKHASRVLILEDLVDHTNV 143 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA +RSA A D I+ T + + + G + +P+ R+ D H GF Sbjct: 144 GAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP-ALFHEAGF 202 Query: 208 Q--TIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + L DS+ + ++ + K+ALI GAE GL+P+T A + + M + Sbjct: 203 ELAALALREDSQDLRDYAMELGAAPSRKVALIAGAERDGLKPQTIARADKVVRIAMAHGV 262 Query: 261 KALNVSNAAAVALYITQNH 279 +LNV+ A A+A + T + Sbjct: 263 DSLNVAGAIAIACWATATN 281 >gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] Length = 370 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L+ ++ ++ L+ V +PHN+G I+RS F G+I + ES ++A G E Sbjct: 213 LENAVDTDCVLALEDVGNPHNLGGIMRSCAHFGVKGVI-LQDAGMLESGAAIRTAEGGAE 271 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLR 241 HI I T L K G+ + SS Q+I K+ L+LG E GL Sbjct: 272 HIKAIDADGFTTTLDKFRQAGYTIVTTSSHKGS---QDIAKVQLPKKMVLVLGQESDGLS 328 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 T + ++ G +++LNVS A + L + +QN Sbjct: 329 DSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 367 >gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] Length = 278 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 16/166 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A +++ L+VLD + DP N+G +LR+A+A + P S L ++++GAL + Sbjct: 104 APKDAHFLLVLDRIQDPGNLGTLLRTALAADVQNVWLGSGVDPLGSKSL-RASAGALLQL 162 Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKI--ALIL 233 P+ R IS LTD L+++ + G Q + S +P+ N ++ AL+L Sbjct: 163 PHHRFGPDEDTAISQLTDELKRLAAGGMQVVATLVPGSQVPIRPVPYWELNWRLPTALVL 222 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G EG GL P+ T L +++LNV+ AAAV L + + Sbjct: 223 GTEGAGLHPELLACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 267 >gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] Length = 259 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L +L N+ + Sbjct: 17 REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEKLYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + I E QG+ + LD + +++D V DP N+G I+R+A Sbjct: 77 VNYSVLKSISNTEN-PQGIVSVINYFKTEKLDL--ENGFYILVDKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GIITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENL-ETVKSLQRNGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D + + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2] gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2] gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] Length = 258 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVLPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] Length = 245 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEHKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 266 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 23/198 (11%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV T + + KI G + + QG+ A++ P N++ + VL+ + + Sbjct: 75 PVYTADREQLTKITGFK-LTQGVLCAMKRRAMQAFP---------ENARRIAVLEDIMNQ 124 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKM 202 NIGA+ RSA A DGI+ T S + + G + I + R + +D+ ++K+ Sbjct: 125 TNIGAVFRSAAAMGIDGILLTDGCSDPLFRRTIRVSMGTVFQIAW-RYAGTSDSGYIEKL 183 Query: 203 HSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G+ T + L D+ ++ +KN +K+A++LG EG GLR T + M Sbjct: 184 KADGWLTAAMALRDDTVSIADERLKNAEKLAIVLGTEGDGLREDTISACDLTVKIPMAHG 243 Query: 260 IKALNVSNAAAVALYITQ 277 + +LNV+ A AVA + T+ Sbjct: 244 VDSLNVAAAGAVAFWETR 261 >gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis 11-1] gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis 11-1] Length = 301 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 24/242 (9%) Query: 47 ENLFLYGVHTVSAALNN-PS--RKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTID 102 E + LYG++ V A P RK++ L A +AL L W + + + V + +D Sbjct: 61 EEVRLYGLNAVQAVFERRPQAIRKLYLLQARVHALRPLLAW--CVQNRVGYRVVENEDLD 118 Query: 103 KIVGKEAVHQGLA---LETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 ++ + H+G+ L + PL L+P A L + LD V +PHN GAIL Sbjct: 119 RLA-ASSHHEGVVADVLRSDPLPLEDWLASLAPGAPA-----LALWLDGVGNPHNFGAIL 172 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ +R + + S A+ A G E + +R+ AL ++H+ GF + Sbjct: 173 RSAAHFGA-AVLLPERSTLALSGAAARVAEGGAEGVALVRLPGNDAALARLHAAGFASAA 231 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + L ++ ++GAEG+G+ + G +++LNV+ A AV Sbjct: 232 TVVRDGEDLFAMQPQPRLVYVMGAEGEGMDAGLAGACQHRVSIAGTGAVESLNVAAATAV 291 Query: 272 AL 273 L Sbjct: 292 FL 293 >gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila UWE25] gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG 182 P +++ +Q ++VLD +NDP N+G ++R+A+AF +GI + P VL +SA G Sbjct: 95 PPFSSLKQAQNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVL-RSARG 153 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLR 241 A IP +R N+ + FQT L +D K + L+ + + LI+G E G Sbjct: 154 AHFKIP-LRRGNINELELLAKQGNFQT--LVADLKGQILKSTVSKKRKILIMGNEAHGPS 210 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 P+ + A + + M G +++LNV+ A + LY + Q +F Sbjct: 211 PEVFKFAEPIC-IPMSGEMESLNVAVAGGILLYALNQMNF 249 >gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] Length = 287 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 10/213 (4%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 LA K LA + + P+ P + + K+ G + +GL PT++ V Sbjct: 68 FLAEKGQLAEAEEILDRMEDVPIYVAPDEILTKLTGYH-LTRGLWCTMRRRTLPTIEEVC 126 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++ + +L+ V +P N+GA+ R A A D +I T S ++ + G + IP+ Sbjct: 127 QGAKRIAILEEVVNPTNVGALFRCAAALGMDAVILTGGCSDPLYRRASRVSMGTVFQIPW 186 Query: 190 IRISNL-----TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLR 241 +S A++ + GF+T + L DS + ++ + +K+A++LG EG GL Sbjct: 187 TMLSKKDGVWPEQAMKTLKEMGFKTAAMALREDSVGIDDPQLNSEEKLAIVLGTEGDGLA 246 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T + M + +LNV+ A AVA + Sbjct: 247 GDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFW 279 >gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] Length = 245 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A DG+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEHKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] Length = 269 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DP N+GAI+R+A A C G++ TK + S + +S+ G++ +P ++ Sbjct: 121 VLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGSILRLPIYHDLDI 180 Query: 196 TDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L+++ S+ IG S + + + I G EG G+ P+ + + Sbjct: 181 -EFLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIFGNEGSGISPEILDLTDWNVFI 239 Query: 255 HMPGIIKALNVSNAAAVAL--YITQNHF 280 M G +++LNVS+ AA+ L Y+ N F Sbjct: 240 PMAGTVESLNVSSTAAIILFYYLDDNEF 267 >gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46] gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46] Length = 270 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P L + R ++ ++V+D V D NIGAI RSA A D ++ T+ + + Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAE 236 + G++ + + I +L ++ GF+T + L+ DS + +K + K+A+I+G E Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKLAIIMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G GL +T A + + M + +LNV+ AA+VA + Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261 >gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36] gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus sanguinis SK36] gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678] Length = 246 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + K D AL++G EG+G+ P+ E A + H Sbjct: 164 ADFIRLAQSSSLPILASTLSSTSIDYREVDSK-DSFALVMGNEGQGISPEMTEAADVLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R] Length = 270 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P L + R ++ ++V+D V D NIGAI RSA A D ++ T+ + + Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAE 236 + G++ + + I +L ++ GF+T + L+ DS + +K + K+A+I+G E Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKLAIIMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G GL +T A + + M + +LNV+ AA+VA + Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261 >gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] Length = 280 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 16/198 (8%) Query: 89 HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 HP PV T P ++ + G +H+G LA P P D + ++ +++ + + D N Sbjct: 82 HPDVPVFTGPDDVLEALTGFH-LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTN 140 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSW 205 +GA++RSAVA D ++ T + + + + G + +P+ R+ + +L + + Sbjct: 141 LGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLPALRAA 200 Query: 206 GF---------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 GF + +GL S +PL +++AL+LG EG G+RP+T + + M Sbjct: 201 GFAVAALEVTERAVGLDSARIEPLR---TAERLALVLGQEGPGVRPETLAQTDADVVIPM 257 Query: 257 PGIIKALNVSNAAAVALY 274 P + +LNV+ AAAVAL+ Sbjct: 258 PDGVDSLNVAAAAAVALW 275 >gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 265 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 171 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD + P N+G+I R A AF I+ + S+ ++A +P RI Sbjct: 18 IVLVLDQLTSPANLGSIFRLADAFGITKIVQYRCDIDMNSSRFKRTARTTNTTVPSERID 77 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 +++ + + S G+ TI L +DS KP++ +K+ LI+G+E KG+ + + Sbjct: 78 DISSYITSLKSDGYTTIALEITDSSKPIDAIPLSSENKLILIIGSERKGVSEQLLKHCDF 137 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++NV+ A +AL+ Sbjct: 138 ATHITMFGKNSSMNVAQATGIALF 161 >gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] Length = 270 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +K+ G+E GL L A L +P L N +L+VL + P N+GAILRSA A Sbjct: 84 FEKVSGREN-PDGL-LGVADLPAPRLPEPGNDAVLVVLHGLEKPGNVGAILRSADAAGAQ 141 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ R + + +S+ G++ +P + T AL+ + + GF T+ + D+ + Sbjct: 142 GVLVLGRGADPYGPNVIRSSQGSVFTMPVAVLDEGT-ALEWLSTRGFTTVACTPDAPRTY 200 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 ++AL+LG E GL + T S++ +H +LNV+ AAA+ L+ Sbjct: 201 WDAPLTGRVALLLGTEHAGLPESWRHTDHSVSIPMHEGSGADSLNVATAAALVLF 255 >gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] Length = 279 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 16/164 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +VLD + DP N+G++LRSA+A + P L ++++GAL +P+ Sbjct: 110 KTCDFWLVLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGGKAL-RASAGALLQLPH 168 Query: 190 IR--------ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIK-NDKIALILGA 235 R I +L AL+ + + G Q + L D+ PL E+ AL+LG Sbjct: 169 RRFGPEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGT 228 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EG GL P+ Q T L +++LNV+ AAAV L + + Sbjct: 229 EGAGLHPRLQACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 271 >gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS 112371] gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS 112371] Length = 573 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 97/318 (30%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84 S P + F+YG V+AA+ RK+ L ++++ W+ Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135 A + H P KT T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 291 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 345 Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160 ++LD + DP N+GAI RSA F D Sbjct: 346 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 405 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211 I + + S S V+ K+A+GA E IP + + +++ + + + W F T+ Sbjct: 406 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 465 Query: 212 LSSDSKKPL-------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 K P+ E+ L+LG EG GL+ K + A S + +PG Sbjct: 466 NDYTRKIPVVNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSDNI 523 Query: 260 ------IKALNVSNAAAV 271 + +LNVS A+A+ Sbjct: 524 RDDTAGVSSLNVSVASAL 541 >gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] Length = 248 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++VLD V DP N+G ++R+A A D ++ K +A + ++ G+L H+ Sbjct: 100 RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRATQGSLFHVNV 159 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +L + L ++ GF G + EQ +K+AL++G E +G+ Sbjct: 160 TSV-DLLEKLPELKEDGFHVYGTALSKATSYEQVAFEEKVALVIGNEAQGVHADVLALCD 218 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + H+ + G +++LN + AA + +Y Sbjct: 219 TRVHIPVLGDVESLNAAVAAGILMY 243 >gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + P N+G ILR+A A DGI+ R S ++ K+++G H P +R Sbjct: 87 VLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVIKASAGVAFHAPVLRAQT 146 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A + + G+ L + +++ + + + +LG+E GL Q + Sbjct: 147 AGHAAELLTEAGYPLYALEAGAQESIYEADFGSRAVFVLGSETAGLSEDVQTRIAQSVAI 206 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LNV++AAAV + Sbjct: 207 PMRGGVESLNVASAAAVLCF 226 >gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 266 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 126 LDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 LD R +++++VL+ VND N+G+I R+ A D ++ R S + + G Sbjct: 105 LDPARLLDEARIVVVLEGVNDHENLGSIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMG 164 Query: 183 ALEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEG 237 + +P+ + D L + GF+T+ L+ + + Q + + +++AL++GAEG Sbjct: 165 HVLLVPFAHLPAAGWPGDGLALLAERGFRTVALTPSGESTVAQALAGRPERVALVVGAEG 224 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + A A + M +LNV+ A AVALY Sbjct: 225 PGLSAEMLAAADVRAAIPMHRGTDSLNVATATAVALY 261 >gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 265 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGGFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] Length = 361 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GAI+RS F G++ + ES ++A G EH+ I Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + G+ + SS + PL + K+ L+LG E GL ++ Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] Length = 260 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + D V DP N+G I+R+A A +GII +K + +S G+L ++P Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYY 169 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N ++ + GF+ I S +S K +E K L +G EG G+ + + A Sbjct: 170 DDNEFSLIKSLKKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRR 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNH 279 + MPG ++LNV+ A ++ +Y I QN Sbjct: 230 VKIPMPGGAESLNVAIATSIIIYEKIRQNF 259 >gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] Length = 255 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 3/152 (1%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L ++ + L+ L+ V DP N+G ++R+A A DG++ +++ + + +S G+ Sbjct: 103 PDLPSIGKGKYLL-LEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADVFNQKTLRSMQGS 161 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 HIP R +++ + M + + + SD +Q L++G EG+G+ P Sbjct: 162 HYHIPVWR-TDVYAFCRTMKTKEMPILATTLSDQSIDYKQVGTLTDFILVMGNEGQGISP 220 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K E ++ + H+ MPG ++LNV+ AA + ++ Sbjct: 221 KMAELSSQLVHISMPGQAESLNVAVAAGILIF 252 >gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] Length = 264 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185 R L++VLD V DP N+G I+RSA A D ++ Y+P +S G+L Sbjct: 114 REQSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKT----VRSTMGSLF 169 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+P I ++L + L K G + S S L++G+E GL P+ Sbjct: 170 HLPVIE-ADLLELLPKAQERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPEVL 228 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + + G ++LNV+ AA V LY Sbjct: 229 ELADQSVIIPIRGRAESLNVAMAATVILY 257 >gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] Length = 361 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GAI+RS F G++ + ES ++A G EH+ I Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + G+ + SS + PL + K+ L+LG E GL ++ Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] Length = 265 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3] gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3] Length = 263 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 17/260 (6%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKN---ALARLDWDANLP 88 M F + R + L +YG V ALN+ L LA+ N + R DA Sbjct: 1 MSQFRKPDRQERR-RFLTVYGRKAVLEALNDRHMDCRILHLASSNRSGGVLREIQDAADA 59 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRN----------SQLLMV 137 + + + +I QG+AL+ P + D + + Q L+ Sbjct: 60 RGLDCREHSREELARISRNGRQDQGVALDVYCPAMRELDDYINDINDISGESGKPQRLLA 119 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V +P N+G ++RSA A DG++ R +P+ ++ K+++G + P +R ++L Sbjct: 120 LDGVTNPQNMGMVIRSAAAAGIDGVLYADRGNPALGPLVIKASAGTVFRAPLLRCASLFK 179 Query: 198 ALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A Q + GF+ L +S S+ + + + +LG E G+ + + M Sbjct: 180 ASQSLCEQGFRLYRLQASGSRTLFDGQPFAHRALFVLGGESDGISRELSALPGENLSIPM 239 Query: 257 PGIIKALNVSNAAAVALYIT 276 +++LNV+ + A+ Y+ Sbjct: 240 ANGVESLNVAVSGALVAYVA 259 >gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895] Length = 348 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 201 CVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 259 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ D L G+ + SSD KPL K+ L+LG E + L +E Sbjct: 260 SIVDVLDDFRQAGYTIVTTSSDQGKPLFSTALPAKMVLVLGRELESLPEAAREPGDLCVK 319 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G ++ LNVS A V L + QN Sbjct: 320 IDGTGNVENLNVSVATGVLLGEWWRQN 346 >gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 280 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P+++ V R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + G Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239 ++ IP+ + + L+K+ GF+T+ ++ K ++ I K+A+++G EG G Sbjct: 170 SVFLIPWTWLDGSPNELRKL---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ +T A + + M + +LNV+ A+A+A + Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] Length = 246 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 + L+ V DP N+G I+R+A A G+I + + + S +S G+ H+P R + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMPVE 164 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + +K H T LS +SK E + D AL++G EG+G+ P + A + H Sbjct: 165 TFVEEAKKNHLPILATT-LSQNSKDYRELDRLED-FALVMGNEGQGISPFMTDQADQLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAIAAGILMF 243 >gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] Length = 265 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKREKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENDV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTNQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] Length = 307 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV ++++VG +H+G +A P L + S+ ++VL+ + D N+G Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A +RSA A + D I+ T + + + G + +P+ R+ DA H+ GF+ Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230 Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + L D+ + +++ D K+AL+ GAE GL+ T A + + M + Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290 Query: 262 ALNVSNAAAVALY 274 +LNV+ A AVA + Sbjct: 291 SLNVAGACAVACW 303 >gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 246 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 7/155 (4%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL TLD +VL+ V DP N+G ++R+A A DG+ + + + + + +S Sbjct: 95 LLPETLDGK-----FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKG 239 G+ H+P R+ ++ L + S + + + S+ +EI + AL++G EG+G Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A + H+ MPG ++LNV+ AA + L+ Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243 >gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 268 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 75/141 (53%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VL+++ DP N+G +LRS GII +K + + + +S G++ +P+I + Sbjct: 119 LILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVE 178 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ + L+ + + G T +K ++ A ++G EG GL +T + A + Sbjct: 179 SIPEVLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYIL 238 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++++N + ++A+ + Sbjct: 239 IPMKGEVESMNAATSSAILTF 259 >gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16] Length = 227 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 18/230 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104 +YG + LN+ K+ ++ +K + + F +K P I + Sbjct: 5 IYGKQVLMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56 Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + K HQG LA PL P L V+ Q L+VL + D NIG I RSA +G+I Sbjct: 57 LAKGGNHQGVLARVELPLALP-LKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVI 115 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + ++ +S+ G + +P+ N D + ++ + GF +G S +E Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] Length = 265 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A S +L++P G ++LNV Sbjct: 190 PVYGTALENGVPFAEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 290 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 16/222 (7%) Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA----VHQGL--ALE 117 P R +F T+ LA L +TVP +D+ V A +H+GL + Sbjct: 62 PLRAVF---GTRQKLASLADGLTASEAAIAETVPWFELDREVLAAAAGFDLHRGLLATAD 118 Query: 118 TAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 AP LS +D V + L V++ V D NIGA+ R+A DG++ + Sbjct: 119 RAPELS--VDQVLSGATTLAVMEGVGDHENIGALFRNAAGMGVDGVVFGAACADPLYRRS 176 Query: 177 AKSASGALEHIPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + G + +P+ + T Q+ + GF+ + ++ L + DKIA++ Sbjct: 177 VRVSMGHVLTVPFATLPGTTTTWQRSLDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAIL 236 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GAEG GL A + M +LNV+ +AA+A Y Sbjct: 237 VGAEGPGLTEHAMAATDVRARIPMSPGTDSLNVATSAAIAFY 278 >gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str. Okra] Length = 259 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+ITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + I + +G EG G+ + A + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESLNVAVACSIMTF 251 >gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G I+RS F G++ + + ES ++A G EH+ I Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + + G+ + SS L Q K ++LG EG GL + Sbjct: 295 DFLSVLTEFRNAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + QN Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382 >gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] Length = 258 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G ++R+A A G+I K + + + +S G+ H+P ++ L Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 T+ +Q G G L+ + EQE + ALILG EG G+ P+ T + Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-EIYALILGNEGSGVSPELLAETTKNLY 231 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNV+ AA V ++ +N+ Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] Length = 267 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 16/192 (8%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ T + I G L P L + + + ++D V D NIGAI Sbjct: 78 IPIYTGTRDMLASITGYTLSRGVLCAMKRPTLPSVESICKTASRIAIVDGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A DGI+ TK + + G++ IP+ + N + ++ +GF+T+ Sbjct: 138 FRSAAALGIDGILLTKSSCDPFNRRAVGVSMGSIFLIPWTWLDN---NISEVSQYGFKTV 194 Query: 211 GLS--------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ +D++ E+ K+A+ILG EG GL T + + M + + Sbjct: 195 AMALRHNSIDINDARLKAEK-----KLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDS 249 Query: 263 LNVSNAAAVALY 274 LNV+ A+A+A + Sbjct: 250 LNVAAASAIAFW 261 >gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] Length = 265 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENSV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGAPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] Length = 245 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ + DP N+G I+R+A A DG+ +++ + + +S G+ H+P R +++ Sbjct: 104 LILEDIQDPGNLGTIIRTADAAKFDGVFLSEKSADVYNQKTLRSMQGSHFHLPIWR-TDI 162 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 Q M + LS DS + ++ +AL+LG EG+G+ P+ A + H Sbjct: 163 YQVSQVMQQQKIPVLATTLSQDSIDYKDLSARS-SLALVLGNEGQGISPEMAALADQLIH 221 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + ++ Sbjct: 222 ISMPGQAESLNVAVAAGILIF 242 >gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A S +L++P G ++LNV Sbjct: 190 PVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 361 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GAI+RS F G++ + ES ++A G EH+ I Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + G+ + SS + PL + K+ L LG E GL +A Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVA 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 279 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 8/152 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182 D + ++ LL++++++ DP N+G ILR G+I T Y+P +S G Sbjct: 124 DMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVIMSSNTVDIYNPKT----IRSTMG 179 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ +P++ + + +DA+ + + G + D K E + A ++G EG GL Sbjct: 180 SIFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTE 239 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + M G +++LN + A + Y Sbjct: 240 DITKQADTLIRIPMQGEVESLNAAIACTILTY 271 >gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 20/257 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYMV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALN 264 G + ++ P + ALI+G EG G+R QE T +L++P G ++LN Sbjct: 190 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVR---QEILTKTDQNLYIPIYGGAESLN 246 Query: 265 VSNAAAVALYITQNHFA 281 V+ AA + Y Q+ A Sbjct: 247 VAVAAGILTYYLQSPVA 263 >gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKREKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENDV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKQGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENSV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 246 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 28/217 (12%) Query: 66 RKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 KIF L + +N LA W + + PQ I +V KE V Q Sbjct: 47 EKIFALESYRNQLAAFPQTIWVSEDILLDLADSQTPQGIVAVVQKEEVGQ---------- 96 Query: 123 SPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 V SQ + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 97 ------VDFSQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQ 150 Query: 182 GALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEG 237 G+ H+P R+S+ L +A K S LS DS E I+N L++G EG Sbjct: 151 GSHFHLPIYRMSSQRLLEEA--KKASIPVLATTLSKDSVDYRELPSIEN--FVLVMGNEG 206 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 207 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 382 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G I+RS F GI+ + + ES ++A G EH+ I Sbjct: 235 CVLALEDVGNPHNLGGIMRSCAHFGVKGILV-QDAALLESGAAVRTAEGGAEHVKAINAD 293 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + G+ + SS L Q K ++LG EG GL + Sbjct: 294 DFLSVLAEFRRAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 353 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + QN Sbjct: 354 IGGTGKVESLNISVATGILLSEWWRQNQ 381 >gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A] gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A] gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa] Length = 644 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 128/290 (44%), Gaps = 71/290 (24%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV-----PPQT 100 FLYG V AAL + RK+++L A + LA+ L V+TV + Sbjct: 331 FLYGTSVVEAALQSARRKLYKLYIYAGANREKLAKDAAIQKLAQRNKVETVFVNEEGLKM 390 Query: 101 IDKIVGKEAVHQGLALETAPLLSP---TLDAVRNSQ------------------------ 133 +DK+ G H G LE +PL P +L V +++ Sbjct: 391 MDKMSGSRP-HNGYILEASPLPQPPVISLGEVVDAESGQGTTGYKVVLGHQSHEEALING 449 Query: 134 --------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L++V+D + DP N+GAILRS + TKR S S + V K+ Sbjct: 450 KSDFVAASSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKA 509 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLE----QEI---- 224 ++GA E + I +L LQ G+ +T G S + +K L+ +EI Sbjct: 510 SAGASESLTLFSIDHLPKFLQDSRENGWLVYAAVPRTSG-SGNLQKHLDLHEIEEIDPLG 568 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG--IIKALNVSNAAAV 271 KN I L+LG+EG+GL + + A ++ +M G +I +LNVS AA + Sbjct: 569 KNPCI-LLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGL 617 >gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI] gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 254 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V L + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEVLK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 278 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 14/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102 + L LYG + V A + + + +L ++ + R L W + + + V ++ Sbjct: 37 DELRLYGWNAVQALFDKRPQALRKLYLVESLIPRMQPVLKW--CVANRVGYRVVEEGDLN 94 Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K+ H+GL + PL D L + LD V +PHN GAILRSA F Sbjct: 95 KLAATTH-HEGLVADVLRAPVVPLAQWLEDLGEGPALALWLDGVGNPHNFGAILRSAAHF 153 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ + + S A+ A G E +P +++ + A+ ++ + GF + Sbjct: 154 GVKALLLPAGSTLALSGAAARVAEGGAESVPLVQLPDNAQAMAQLRAAGFGLAATLVEGG 213 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YI 275 + + + ++ ++GAEG+G+ + G +++LNV++A AV L + Sbjct: 214 EDVFRASLPARLVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWA 273 Query: 276 TQNH 279 ++ H Sbjct: 274 SRRH 277 >gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli OP50] Length = 103 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A GA E +P IR++NL ++ + +G + ++ L Q ++AL++GAEG+G Sbjct: 2 ACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEG 61 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +R T+E + + M G + +LNVS A + L+ Sbjct: 62 MRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 96 >gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] Length = 265 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 20/257 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALADGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMP--GIIKALN 264 G + ++ P + ALI+G EG G+ +QE A S +L++P G ++LN Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGV---SQEILAKSDQNLYIPIYGGAESLN 246 Query: 265 VSNAAAVALYITQNHFA 281 V+ AA + Y Q+ A Sbjct: 247 VAVAAGILTYYLQSPVA 263 >gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 361 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GAI+RS F G++ + ES ++A G EH+ I Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + G+ + SS + PL + K+ L LG E GL +A Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVA 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] Length = 265 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD V DP N G ILR+A DG++ +A +S++G+L +P+ R Sbjct: 118 LLVALDEVQDPGNAGTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSAGSLLGMPHTRAG 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252 +L AL+++ GF+ I S + + ++ L++G E G+ P+ + A + Sbjct: 178 DLPAALRQLQKAGFKVICSSLEGEDFRSGGAWPERTVLVVGNEANGVGPEVRVLADRLVK 237 Query: 253 --HLHMPGIIKALNVSNAAAV 271 H P +++LN + +AA+ Sbjct: 238 IPHGRGPARVESLNAAVSAAI 258 >gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 345 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VL++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLVLENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR 15-3] Length = 271 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ VP + +D I G VH+G+ + PLL L + L+ VL +++ N+ Sbjct: 78 PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPLLKEFLQNLPEKALISVLCGISNHDNM 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A AF+ GII K + ++GA ++PY + ++ + + + F Sbjct: 137 GAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIVTALSNANF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LS + + L+ ALI G EG GL + + ++ + M ++NV+ Sbjct: 197 HLYALSPSASRYLKDAKATKHTALIFGTEGNGLPAHILQKSETL-RIPMAYGFDSINVAT 255 Query: 268 AAAVALYITQNHFA 281 A+ +AL HFA Sbjct: 256 ASGLAL----AHFA 265 >gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 267 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + ++ + V++ V D NIGAI RSA A D I+ T+ + + + G++ Sbjct: 114 EICKGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKGLRPK 243 IP+ + L + ++H GF+T+ ++ K ++ I K+A+++G EG GLR + Sbjct: 174 IPW---AWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGLRNE 230 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T A + + M + +LNV+ A+A+A + Sbjct: 231 TITEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] Length = 254 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A S +L++P G ++LNV Sbjct: 179 PVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 303 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + + G E L P + RN++ + VL+++ D N GAI Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAI 165 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201 +RSA A D ++ T PS L + A G + IP+ I Q Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221 Query: 202 MHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++S GF+T ++ S K L+ E +++A+ILG+EG GL KT + + Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSE---ERLAIILGSEGYGLSQKTIDGCDYTVKIP 278 Query: 256 MPGIIKALNVSNAAAVAL 273 M + +LNV AAAVA Sbjct: 279 MYHGVDSLNVGAAAAVAF 296 >gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] Length = 236 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 72 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 233 >gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88 ++ + S +++ S + GV V L + R LL T+ LA L D A +P Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 80 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147 P+ + + ++VG +++G+ + P + + + S+ + VL+ VND N+ Sbjct: 81 VPYYRTSA--DVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 197 Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ S L + + + D++A+++GAEG GL P + + M +L Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257 Query: 264 NVSNAAAVALY 274 NV+ AAA+A Y Sbjct: 258 NVATAAALAFY 268 >gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] Length = 265 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 254 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 253 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++++D V DP NIG ++R+A A D ++ K + + +SA G+ HIP +R + Sbjct: 111 VLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVR-GD 169 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ + + G + G S D ++ +D ALI+G EG G+ P+ + Sbjct: 170 LMEWVENLQADGIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGINPQILAKTDQNIII 229 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ A + LY Sbjct: 230 PILGGAESLNVAVATGILLY 249 >gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] Length = 246 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] Length = 257 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + I +L+ + DW Sbjct: 16 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVITELIVSDQTDLPKDWTVTD 69 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 70 VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEIALTDGKFLLLDGLQDPGNL 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 123 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G S ++ P + ALI+G EG G+R + ++ + G ++LNV+ Sbjct: 182 PVYGTSLENGIPYGEVTPTGSFALIVGNEGNGVRLEILTKCNQNLYIPIYGGAESLNVAV 241 Query: 268 AAAVALYITQNHFA 281 AA + Y Q+ A Sbjct: 242 AAGILTYYLQSPVA 255 >gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] Length = 265 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925] gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925] Length = 260 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++D + DP N+G I+RSA A G+ITTK + +S G++ IP + Sbjct: 113 FYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIVE-D 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N + L+ + S GF+ + S D+K K + +G EG G+ E Sbjct: 172 NDFEVLKNLKSKGFKVVVSSLDTKNNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVK 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LN AA++ +Y Sbjct: 232 IPMPGDAESLNAGVAASIMMY 252 >gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227] Length = 370 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 281 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + +K+ L+LG E +GL ++ Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 341 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368 >gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] Length = 290 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 21/197 (10%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T P + ++ G L P + ++ + VL++V +P N+GAI Sbjct: 95 PVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGAIF 154 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW------ 205 RSA A + DG++ T+ S + + G + IP+ L K SW Sbjct: 155 RSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPW-------TFLDKQFSWPLQGIA 207 Query: 206 -----GFQTI--GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMP 257 GFQT+ L DS + + + + ++A++LG EG GL +T + M Sbjct: 208 HLRELGFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMS 267 Query: 258 GIIKALNVSNAAAVALY 274 + +LNV+ A++VA + Sbjct: 268 HGVDSLNVAAASSVAFW 284 >gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] Length = 236 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 72 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 233 >gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] Length = 264 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---I 190 + + LD V DP N+G I+R+AVA GI K + +S AL IP + Sbjct: 116 VYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPVYEDV 175 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +S L D + + + + T + + KP + + LILG EG G+ P+ Sbjct: 176 TLSMLNDLIAESNMSTYVT---ALEESKPYNMVTYDKRCMLILGNEGNGVTPEVMNLCKH 232 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G I++LNVS AAA+ +Y Q Sbjct: 233 RIMIPMYGDIESLNVSVAAALCMYKAQEQL 262 >gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] Length = 288 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + VL+ V +P NIGAI RSA A DG++ T + ++ + G + +P+ + Sbjct: 135 IAVLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVPWTYVDA 194 Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + +H G++T + + + P ++ DK+A+ILG+EG GLR KT Sbjct: 195 KLWQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQV--DKLAIILGSEGPGLREKTIA 252 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M + +LNV+ A+A+A + N Sbjct: 253 QSDFTIKIPMAPGVDSLNVAAASALAFWELGNR 285 >gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] Length = 246 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] Length = 303 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + + G E L P + RN++ + VL+++ D N GAI Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAI 165 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201 +RSA A D ++ T PS L + A G + IP+ I Q Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221 Query: 202 MHSWGFQT--IGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++S GF+T + L+ +S ++ ++++K +A+ILG+EG GL KT + + M Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYH 281 Query: 259 IIKALNVSNAAAVAL 273 + +LNV AAAVA Sbjct: 282 GVDSLNVGAAAAVAF 296 >gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 269 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +H+G +A P P D + ++ + VL+ + D N+GAI RSA A D ++ + R Sbjct: 95 LHRGAMAAMQRPAPVPLPDLLAGARRVAVLEDIVDHTNVGAIFRSAAALDIDAVLVSPRC 154 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN 226 + + G + +P+ R+S+ L + GF + L++D++ +N Sbjct: 155 GDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKEHGFTVAALELTADARDVDAVAAQN 214 Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K+AL+LG EG G+ +T + M + +LNV+ A+AVA + Sbjct: 215 PEKLALVLGTEGAGMSAETLAAVDLAVKIPMRNGVDSLNVAAASAVAFW 263 >gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] Length = 246 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 258 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189 ++ LL+ ++ + DP N+G I+R+A A DG+ +T P VL ++++G +P Sbjct: 107 SASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP- 164 Query: 190 IRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I+ TD Q + SW G+Q + + L Q L+LG EG GL P Sbjct: 165 --IAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAA 222 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A S + +++LNV+ AAA+ LY Sbjct: 223 IADSAVTIPQAAGVESLNVAIAAALLLY 250 >gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 3502] gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 19397] gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. Hall] gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] Length = 259 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VSYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GIITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLRKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D + + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863] gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] Length = 345 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + +K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L] gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L] Length = 254 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEV--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] Length = 229 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 2/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG ++ ++ S+ +++L ++D N+GAI+R+A A DG++ + Sbjct: 61 HQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFIGKNLA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ES V +S+SGA +P ++ AL ++ F+ G ++ K Sbjct: 121 QESIV--RSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKKV 178 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LI+G+EG GL K + + M +LNVS A A+ Sbjct: 179 LIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAI 219 >gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] Length = 212 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 48 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 93 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209 >gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] Length = 234 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189 ++ LL+ ++ + DP N+G I+R+A A DG+ +T P VL ++++G +P Sbjct: 83 SASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP- 140 Query: 190 IRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I+ TD Q + SW G+Q + + L Q L+LG EG GL P Sbjct: 141 --IAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAA 198 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A S + +++LNV+ AAA+ LY Sbjct: 199 IADSAVTIPQAAGVESLNVAIAAALLLY 226 >gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39] gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39] gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6] gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6] Length = 252 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 88 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 191 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 192 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 249 >gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 254 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974] gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 275 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWD-AN 86 D++ + S +++ S + GV V L SR + + LL T L L D A Sbjct: 21 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRML--ASRFVPRALLGTDRRLTELGTDLAG 78 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSP--TLDAVRNSQLLMVLDHVND 143 L PF + + +VG LA + AP L+ LD R + VL+ VND Sbjct: 79 LDAPF--YRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGART---VAVLEGVND 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G++ R+A DG+I + + + G +P+ + +N L+ + Sbjct: 134 HENLGSVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAANWPGDLELLR 193 Query: 204 SWGFQTIGLSSD-SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 GF+ + ++ D + + L Q + ++A+++GAEG GL+ T + + M Sbjct: 194 DQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSRG 253 Query: 260 IKALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 254 TDSLNVATAAALAFY 268 >gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818] gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 230 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ + P + +L ++ L+VL ++D NIG+I R+A A GI+ S Sbjct: 61 HQGILAQIIPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLP-SL 119 Query: 171 SESAV--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S+ A+ + + +SGA ++PY + + D L ++ + F +G ++ +E K Sbjct: 120 SQKAIEGIVRLSSGAFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIENP---QK 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E GL + + +M + M +LNV+ A + + Sbjct: 177 WALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGILI 221 >gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae TIGR4] gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4] gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV200] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV104] gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 246 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] Length = 297 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 12/251 (4%) Query: 32 KMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPH 89 +++ F N + R E G + L + + LL +N LA L + A P Sbjct: 41 RVEPFRNVRDRDLVGREGFIAEGTVVLDQLLVSRRFRPTSLLILRNRLAGLAERLARFPG 100 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDP 144 P+ D I G AVH+G+ A P + T+ A +++ + N Sbjct: 101 DAPIHVADQAVFDGIAGF-AVHRGVLAHGAERGARPSAADTIAAAGGRPIIIAVGLSNH- 158 Query: 145 HNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GAI R+A AF ++ T P L S AL +P+ R + Sbjct: 159 DNLGAIFRNAAAFGAGAVLCDTTSCHPLYRKALRVSVGTALT-VPWCREGTGESLVAACR 217 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G++ + LS + PL + + AL LGAEG+GL P ++ PG + +L Sbjct: 218 AAGYRVLALSPAGETPLAGLVTAGRTALCLGAEGQGLSPDLMRAVETVRIEMAPG-LDSL 276 Query: 264 NVSNAAAVALY 274 NV+ +AA+ L+ Sbjct: 277 NVATSAAIVLH 287 >gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] Length = 254 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 9/145 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE-HIPY 189 L++LD + DP NIG I+R+ VA + +I TK YSP V+ + G +I Y Sbjct: 108 LIILDAIQDPGNIGTIIRTLVAANYRTLILTKSSVDVYSPK---VVRATMGGIFNVNIIY 164 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N+ L K + + + LS +S E E+K DK A I G EG G+ + E + Sbjct: 165 EEKENIIKFL-KENGYNIISTALSKESIDYREVELKKDKNAYIFGNEGGGVSDEFLEISH 223 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 A + + G I++LNVS A + LY Sbjct: 224 QKAIIPIYGKIESLNVSIALGIFLY 248 >gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus 13826] Length = 226 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG + ++ + VL ++D NIGAI RSA A C+G++ + S Sbjct: 61 HQGFLASVSEFEFSDFSELKKLNFIAVLYGISDVGNIGAIARSAYALGCEGLVIVTK-SV 119 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + VL +S+SGA IP + L ++ GF+ +S+ K E + + A Sbjct: 120 NMQGVL-RSSSGAAYEIPIAIFEDGLSLLNELKQCGFRLYATASNGKNIKEMKFAGKR-A 177 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L++G+EG+G+ K + + +LNVS A A+ Sbjct: 178 LVMGSEGEGIPQKALAKCDECVGIKLKDGWDSLNVSAAFAI 218 >gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 345 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 3/159 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +S L ++ L+ + +PHN+G ++RS F G++ S ES ++A Sbjct: 187 VSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAHFGAKGLLVDD-ASLLESGAAVRTAE 245 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G EH+ I + + L G+ + SS PL Q K L+LG E GL Sbjct: 246 GGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSHKGTPLAQAELPAKTVLVLGQERDGLS 305 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 T + + G +++LNVS A + L + QN Sbjct: 306 DSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEWWRQN 344 >gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 289 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 22/210 (10%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALET---APLLSPTLDAVRNSQLL 135 RLD D PV + +D VG A+H+G LAL P L L+ + + L+ Sbjct: 88 RLDADC------PVYVAGREVLDAAVGF-AMHRGILALGRHLPPPSLGGFLEGLPDQALV 140 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V + + N+G I R+A F D ++ + + + GA +P+ R ++ Sbjct: 141 VVACGIANHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVGAALRVPFCRGGSI 200 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + ++ S GF+ +GLS + L + + L+LG EG+GL +E ++A L Sbjct: 201 LALVGELVSHGFEVVGLSPRGAEELSRFQPGRRQVLLLGTEGEGL---PEELLNALATLR 257 Query: 256 M---PGIIKALNVSNAAAVALYITQNHFAK 282 + PG + +LNV+ + +AL+ H AK Sbjct: 258 IEQAPG-LDSLNVATTSGIALW----HIAK 282 >gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] Length = 212 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 48 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 93 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209 >gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT] gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT] Length = 262 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +++D V DP N+G I+RSA A G+I TK + +S G++ IP I N Sbjct: 115 ILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIPIIE-DND 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + GF+ I S D++ K+ + +G EG G+ + + Sbjct: 174 FEVINDLKLKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEGNGVSDEVYNLGDERVKIP 233 Query: 256 MPGIIKALNVSNAAAVALY--ITQNH 279 MPG ++LNV AA++ +Y + QNH Sbjct: 234 MPGDAESLNVGVAASIMMYEVVRQNH 259 >gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC 700975] Length = 273 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 14/196 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 PV V T+ ++ G + +H+GL + T+D V ++ L +++ V D NIG++ Sbjct: 71 PVYQVTRATLGEVTGFD-MHRGLVAAADRAEAWTVDEVIEGARTLAIMEGVGDHENIGSL 129 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI---PYIRI----SNLTDALQKMH 203 R+A DGI+ S + + +S ++ H+ P+ R + L+++ Sbjct: 130 FRNAAGMDVDGILLG---SGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLEQLR 186 Query: 204 SWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+ + L+ D+ + DK+AL++GAEG GL A + M Sbjct: 187 EKGFRLVSLTPHPDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNVRARIPMAEGTD 246 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ +AA+A Y Q Sbjct: 247 SLNVATSAAIAFYERQ 262 >gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 20/266 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I SL++ H + +KK+Q+ +K R S + G H V AL + Sbjct: 2 EVITSLQNVHV-------KTWKKLQT--RKGRQKSG--QYLVEGFHLVEEALAQDGL-VK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +++ TK+ + F V V + + + QG+ +L P++ + Sbjct: 50 EVIYTKDTILPFSLTET---AFDVYEVTRE-VSHAISDTKTDQGV-FAVVEMLEPSILML 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+V D V DP N+G ++R+A A D ++ + + + + +SA G+ HIP Sbjct: 105 FGKRFLLV-DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL + + + G IG L + LE + +AL++G EG G+ E Sbjct: 164 IQ-ANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGISAPIVERL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + G ++LNV+ AA + +Y Sbjct: 223 SERVYIPIYGKSESLNVAVAAGILMY 248 >gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] Length = 259 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VNYFVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GIITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLRKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D + + +G EG G+ + + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 212 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 48 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 93 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209 >gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] Length = 257 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD++ DP N+G I R+A A GI+ + + +S GA+ +P++ + + Sbjct: 111 ILVLDNLQDPGNLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVED 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + + + D K ++E A ++G EG GLRP+ E A + Sbjct: 171 MIEGIDNLKKNNIRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRI 230 Query: 255 HMPGIIKALN 264 M G ++LN Sbjct: 231 PMEGQAESLN 240 >gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234] gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234] Length = 276 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 7/209 (3%) Query: 71 LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125 +L +N LA L + A P PV + D I G +H+G LAL + P Sbjct: 61 ILLLENRLAGLAELLAEFPADVPVFVADARVFDAIAGFN-MHRGVLALGRSDAVPDRDAL 119 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + A+ S L++ +++ N+G++ R+A AF D ++ + + G++ Sbjct: 120 IAALPASSLVLAACGLSNHDNMGSLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVL 179 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ R + ++++H+ GF GLS + + + ++AL++G EG+GL P+ Sbjct: 180 TLPFARQGTAAELIERLHAAGFAIWGLSPRGETEVTEIPPAQRVALLVGTEGEGL-PQAV 238 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A A + + +LNV+ AA +AL+ Sbjct: 239 LSAVRTARIRQRPGLDSLNVAMAAGIALH 267 >gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str. 657] Length = 259 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VSYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+ITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D + + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKDDMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424] gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424] Length = 177 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + DP N+G I+R+A AF+ D II K + + +S G+ HI + Sbjct: 32 VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFENID 91 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMA 252 + + +M + L +D K LE E+ N +A+I G EG G+ + ++ Sbjct: 92 IKQLVTEMKEFNIYATSLKAD--KYLE-ELDNITGHVAIIFGNEGSGVTDEILGEVNNLL 148 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 ++MPG ++LNVS AA + ++ Sbjct: 149 KINMPGRAESLNVSIAAGIVMH 170 >gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 251 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 116/251 (46%), Gaps = 16/251 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ +K R + LFL G H V A+ + + + +L+ + W+ Sbjct: 13 KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV T+ + + + + QG+A L L+ V+ + +++D V DP N Sbjct: 67 ---GVPV-TIVTEAVMRAISSTETPQGIA-AVCRKLPAELEGVKTA---LLIDAVQDPGN 118 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A D +I + + + + ++ G+L H+P ++ +L + + G Sbjct: 119 LGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++ ++ A+++G EG G+RP T ++ + G ++LNV+ Sbjct: 178 IPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237 Query: 267 NAAAVALYITQ 277 AA + LY Q Sbjct: 238 VAAGILLYSLQ 248 >gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 269 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 2/154 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LS L N LLM+L+ + DP N+G ILR+ G+I ++ + + +S Sbjct: 108 LSEILSGEENP-LLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166 Query: 182 GALEHIPYIRISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P I ++++ D L + G T + + ++E A ++G EG GL Sbjct: 167 GSVYRMPIIYVNSIEDEVLPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGL 226 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A ++ + M G +++LN + A+ + +Y Sbjct: 227 SEHLTERADTLIKIPMQGKVESLNAAMASGILMY 260 >gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] Length = 279 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 70/141 (49%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LM+L+ + DP N+G ILR+ G++ + + + + +S G++ +P++ + Sbjct: 127 CLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRVPFVYVD 186 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L+ AL ++ S G + +QE I ++G E GL +T A Sbjct: 187 DLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAMADCYIK 246 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A++V ++ Sbjct: 247 IPMAGQVESLNAAVASSVLMF 267 >gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 278 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++L+ + DP N+G ILR+ G+I T Y+P + +S G++ +P++ Sbjct: 124 LVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPK----VIRSTMGSVYRVPFV 179 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +L A++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 180 YVEDLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADA 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + AA++ +Y T Sbjct: 240 YIKIPMLGKVESLNAAVAASILMYET 265 >gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 270 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 12/253 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALARLDWDA 85 D++ + S +++ S + GV V A+ P LL T L L D Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPR----ALLGTDRRLTELGTDL 72 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + P + + ++VG LA + P DA+ ++ + VL+ VND Sbjct: 73 DAVDA-PFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHE 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A D +I + + + G +P+ R + D L + Sbjct: 132 NLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDK 191 Query: 206 GFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GFQ + ++ +D+ + +++A ++GAEG GL + + + M Sbjct: 192 GFQLLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTD 251 Query: 262 ALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 252 SLNVATAAALAFY 264 >gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] Length = 280 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P+++ V R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + G Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239 ++ IP+ + + L+K GF+T+ ++ K ++ I K+A+++G EG G Sbjct: 170 SVFLIPWTWLDGSPNELRKQ---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ +T A + + M + +LNV+ A+A+A + Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P+++ V R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + G Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239 ++ IP+ + + L+K GF+T+ ++ K ++ I K+A+++G EG G Sbjct: 170 SVFLIPWTWLDGSPNELRKQ---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ +T A + + M + +LNV+ A+A+A + Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] Length = 196 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R +++D+V DPHN+ AILRS AF GI Y+ S+ LAK +S + + Sbjct: 18 AKRQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHLY--YTVSQWPELAKKSSASGKK- 74 Query: 188 PYIRISNLTDALQ---KMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++ + TD ++ + G+Q + S++ +PL + A+IL E G P+ Sbjct: 75 -WVERTKHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSNEHSGTAPE 133 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E ++ M G+I++ NVS AAA+ LY Sbjct: 134 LAELVPDEVYIPMQGMIQSFNVSVAAALILY 164 >gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 251 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%) Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A E A + A +N + + +LD + DPHN+GAI+R+A G+I Sbjct: 67 HQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAHGVI 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A +A++++GA+ + P +++N+ ++++ G + +K + Sbjct: 127 IPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCADMGGEKMYNID 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 + I LI+G EG G+ ++ +A + M G I +LN S A V Y I + AK Sbjct: 187 LTG-SIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRIAK 245 >gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] Length = 246 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + L+ V DP N+G I+R+A A G+I + + + S +S G+ H+P R+++ Sbjct: 104 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTS 163 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251 L D +K+ T LS DS E I+N L++G EG+G+ P E+A + Sbjct: 164 QALLDETKKVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQL 220 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 221 VHISMKGQAESLNVAVAAGILIF 243 >gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 318 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 17/178 (9%) Query: 111 HQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ L+ L PTL D + + LD + DP N+GA LRSA DG++ Sbjct: 134 HQGVLLDAEALEIPTLEDLPKWDGRGEPPVWLALDEIVDPQNLGAALRSAHFLGVDGVVC 193 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S +A ++K+++GA+E + + L K G+ +G ++D++ +++ Sbjct: 194 CAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFLAKARDEGWDVVGAAADARA---EDV 250 Query: 225 KNDKI----ALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274 + + L++G EG GLR + + + + +LNVS AA + ++ Sbjct: 251 SDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVSVAAGILIH 308 >gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Ciona intestinalis] Length = 326 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 57/306 (18%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRH-------TSQPENLFLYGVHTVSAALNNPSRKI 68 KDS K+ + R K + N K+RH TS N FLYG + AL + R I Sbjct: 24 KDSKPIKISKQKR--KTNLNHNTKARHQRFDKIETSDFGNEFLYGRSVCNLALLSSRRPI 81 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-------------HQGLA 115 F++ W+ P V+T + ++ + E V HQG+ Sbjct: 82 FKMFINSK------WEVQEPEDPRVQTSLKEAEERNIPIEFVSVSDLFEITQGFPHQGIC 135 Query: 116 LETA--PLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 LE P++ T D + + ++L + DP N+G ILR+ +I T Sbjct: 136 LEVGQLPVIPLTQDTITSLIHHKLEQCPVWVLLYDIIDPMNVGNILRTCHFLGVHAVIMT 195 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKP- 219 + +P S+ K++SGA E + + T +Q M ++ +G +++ P Sbjct: 196 PQCAPLSSSA-CKASSGATEIMQIYSVRKPTQFIQDMSEKNWEILGTDIFREDNNTHCPV 254 Query: 220 ---LEQEIKNDKIALILGAEGKGLRPKTQETATSM-------AHLHMPGI-IKALNVSNA 268 +E ++ + LILG+EG G+ +E T + + P + + LNVS A Sbjct: 255 LDVVEHKVTKPSL-LILGSEGSGIPSDVKEICTKLLTIKPLKTNTENPQLSVPCLNVSAA 313 Query: 269 AAVALY 274 A+ L+ Sbjct: 314 TAIILH 319 >gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R] gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R] Length = 276 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 10/199 (5%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQLLMVLDHV 141 DA+L PV V + + ++ G + +H+GL L TA + + N++ ++VL+ V Sbjct: 73 DASLVEGIPVYEVSRELLAEVAGFD-MHRGL-LATADRTEEASVAQVLENARTVVVLEGV 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTD 197 D NIG++ R+A D I+ + + + + G + +P+ + + Sbjct: 131 GDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEGTYTTWQR 190 Query: 198 ALQKMHSWGFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLH 255 +L+++ GF + L+ D + LE + DK+AL++GAEG GL A + Sbjct: 191 SLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAMRATDVRARIP 250 Query: 256 MPGIIKALNVSNAAAVALY 274 M +LN++ +AA+A Y Sbjct: 251 MAPGTDSLNLATSAAIAFY 269 >gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 282 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P+++ V R ++ ++V+D V D NIGAI RSA A D ++ T+ + + + G Sbjct: 110 PSVEEVCREARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKG 239 ++ +P+ + L +L ++ +GF+T ++ SD ++ + K+A+++G EG G Sbjct: 170 SVFLLPW---TWLDGSLSGLNKYGFRTAAMALSDHSISIDDPVLTAEPKLAIVMGTEGDG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +T A + + M + +LNV+ A+AVA + Sbjct: 227 LPHETITEADYVVRIPMSHGVDSLNVAAASAVAFW 261 >gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis] gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis] Length = 156 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 V N +L +++D + DP N GA+LRS+ F + TT+ S S V++K++SGALE + Sbjct: 1 GVLNDRLWVLMDRIQDPMNFGAVLRSSYYFGVQKVFTTRTDSCRLSPVVSKASSGALEVM 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND----------KIALILGAE 236 + + + LQ + S G+ +G + P E ++D LI+G E Sbjct: 61 DLYSLQSPAEFLQALKSKGWWVVGTAGVKQDGPFEAGPRSDLSWVLPPTDKPAILIVGNE 120 Query: 237 GKGLRPK---TQETATSMAHLHMPGIIKALNVSNA 268 +G+ P+ ++ S++ +I +LNVS A Sbjct: 121 NQGMHPELGAVCDSVLSISPAASSDLIGSLNVSVA 155 >gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72] Length = 263 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD V DP N+G ILR+A A + ++ T + S ++ GA H +RI Sbjct: 116 LVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFH---LRIHE 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 TD + ++ + + D++ K L + +A + GAEG+GL + AT Sbjct: 173 CTDLAGLLATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVL 232 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M I++LNV+ AAAV L+ Sbjct: 233 IPMAAGIESLNVAAAAAVCLF 253 >gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 265 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGKVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] Length = 246 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + L+ V DP N+G I+R+A A G+I + + + S +S G+ H+P R+++ Sbjct: 104 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTS 163 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251 L D +K+ T LS DS E I+N L++G EG+G+ P E+A + Sbjct: 164 QALLDETKKVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQL 220 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 221 VHISMKGQAESLNVAVAAGILIF 243 >gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 275 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV ++ ++ LD + DP N+G +LR+A+A + + P VL ++++GA+ + Sbjct: 104 AVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVL-RASAGAILQL 162 Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQEIKNDKIALIL 233 P+ R + L + L+ S G Q + ++ S P Q L+L Sbjct: 163 PHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRKPTVLVL 222 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 G EG GL P+ QE T L +++LNV+ A AV L + Sbjct: 223 GNEGSGLHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLL 263 >gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 57-2] Length = 345 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLSAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22] gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22] Length = 276 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR+ L +V D P NIG+I+RSA AF G+I T + ++++G+ +P Sbjct: 113 VRDDFLGLVFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVP 172 Query: 189 YIRISN---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +R + + + L+K + G +G D + + + L++G E GL Sbjct: 173 VVRSQSHHEVMEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSA 232 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E + + M G +LN SNAA+V LY Sbjct: 233 WRELCDQVISIPMTGSASSLNASNAASVVLY 263 >gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM 70294] gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM 70294] Length = 398 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 79/349 (22%), Positives = 136/349 (38%), Gaps = 92/349 (26%) Query: 10 EKIFSLKDSH-YAKLRRNHRDYKK----------MQSFNQKSRHTSQPENL--------F 50 + F K +H +A+ + R Y+K QSF + R + P + Sbjct: 52 DDFFRRKYAHVHARQKEGRRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANPLLEY 111 Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVG 106 +YG ++V AAL + R+ F L +L ++ + ++V DK ++ Sbjct: 112 VYGTNSVLAALQSNKREYFTKLYYHGSLQ-----PDIENLSKSRSVELVKTDKHNLNLLT 166 Query: 107 KEAVHQGLALETAPLL---------------------------SPTLDAVRNSQ----LL 135 K+AVH + LET PL + ++ + N L Sbjct: 167 KDAVHNNVVLETKPLKPIEINNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLG 226 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DPHN+GAI+RSA D ++ +++ S + K++SG++E +P + Sbjct: 227 VYLDEVMDPHNVGAIIRSAYFLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKP 286 Query: 196 TDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGK 238 QK W F + ++ D + IKN + L++G E Sbjct: 287 LTFFQKSSEEGGWSFISSCITDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENT 346 Query: 239 GLRPKTQETATSMAHLHMP--------------GIIKALNVSNAAAVAL 273 G+R T S ++ +P + +LNVS A A+ L Sbjct: 347 GIR--TNLRMRSDFYVEIPFGRDSESDSNRQAISTVDSLNVSVATALLL 393 >gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 276 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 16/249 (6%) Query: 29 DYKKMQSFNQKSRHTSQP-ENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDAN 86 DY ++ + K R +P E L++ TV AL R L+A + + D A+ Sbjct: 19 DYTDLK--DVKLRAVREPAEGLYMAESSTVIRRALAAGHRPRSLLMADRWLESMADVIAD 76 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLD 139 P PV + +++I G +H+G LA P L P + V +++ + VL+ Sbjct: 77 WPG-VPVFVGSEEVLEQITGFH-LHRGALAAMHRPALMPVRELVASARGGAGARRVAVLE 134 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+GA RSA A D ++ T R + + + G + +P+ R+ L Sbjct: 135 DVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGL 194 Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHM 256 +++ GF + L+ SD L++ + +K+A++LG EG G+ + + + M Sbjct: 195 RELQDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACDVVVKIPM 254 Query: 257 PGIIKALNV 265 G + +LNV Sbjct: 255 AGGVDSLNV 263 >gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 267 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +H+G LA P L D + ++ + VL+ V D N+GA+ RSA D ++ T R Sbjct: 95 LHRGALAAMHRPPLPAARDLLAGARRVAVLEDVVDHTNVGAMFRSAAGLGVDAVLVTPRC 154 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226 + + + G + +P+ RI + ++ GF L+ E+ + Sbjct: 155 ADPLYRRSVRVSMGTVFQVPWTRIEEWPAGMDELRGAGFTVAALALADDAVTLDELASSP 214 Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +++AL+LG EG GL P T A + + M G + +LNV Sbjct: 215 PERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254 >gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] Length = 432 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88 ++ + S +++ S + GV V L + R LL T+ LA L D A +P Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 223 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147 P+ + + ++VG +++G+ + P + + + S+ + VL+ VND N+ Sbjct: 224 VPYYRTSA--DVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 280 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 281 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 340 Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ S L + + + D++A+++GAEG GL P + + M +L Sbjct: 341 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 400 Query: 264 NVSNAAAVALY 274 NV+ AAA+A Y Sbjct: 401 NVATAAALAFY 411 >gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] Length = 434 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 119/308 (38%), Gaps = 87/308 (28%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105 +++G H V AAL R++ +L N + A + F + +P DK ++ Sbjct: 139 YIFGTHAVKAALTAGKRRVLELYTYNNVDPEITKLAE--NKFGI--LPRMVRDKHALNVL 194 Query: 106 GKEAVHQGLALETAPLLSPTLD------------AVRNSQ-------------------- 133 K VH G+ L+T L P L + NS+ Sbjct: 195 CKNGVHNGVVLKTRKLDVPYLKELGRAEDGKYTLTIENSEDGTISEESKSVLRDAKKDET 254 Query: 134 -----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ LD V DP N+G++LRSA F DG+I + + K+++GAL+ I Sbjct: 255 EELYPLMLYLDEVTDPQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLID 314 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------------------ 230 + + + + G+ I S S KP E+ ND++A Sbjct: 315 LYQTESSLKFIDSVRKNGWHVI---STSGKP--DEVSNDELADKHPKTISQLASKFIDLE 369 Query: 231 ------------LILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274 L++G+EG+G+R + + + + I+ +LNV A V Sbjct: 370 DLQIILRKSPVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGV--- 426 Query: 275 ITQNHFAK 282 I QN K Sbjct: 427 ILQNCIGK 434 >gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202] gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202] Length = 334 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 11/198 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG ++ A I +L AT +L D + L H V + + Sbjct: 93 NRAEEMRVYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEM 152 Query: 102 DKIVGKEAVHQG---LALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +K+ G E H G L ++ +P+ S L R L++LD+VN+ N+G ++R+ Sbjct: 153 EKVTGTE--HHGDVCLLVKKSPVFSLEGYLQITRARDCLVLLDNVNNAQNVGGVIRTCAF 210 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + GIIT + SA A+ A G LE + + + ALQ++ + G+Q I L+ Sbjct: 211 YGVKGIITESSDRLNSSAA-ARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQK 269 Query: 217 KKPLEQEIK-NDKIALIL 233 + P +I +K+ +L Sbjct: 270 QVPTLTKIALAEKVVFVL 287 >gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 165 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V DH+ NIG++ R + AF + II + P + K++ H+P+ I Sbjct: 19 LVCDHIYFQQNIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSRSTHLHVPHQIIEET 78 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMA 252 T+ + F+ I L + + KPL++ + K+ K AL++G+E G+ + + + + Sbjct: 79 TELTAYLQENNFEIIALEITSNSKPLKEVLIPKDKKTALLIGSEIAGISEELLKISHQIV 138 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 H++M G ++NV AA++ALY Sbjct: 139 HINMFGKNSSMNVVQAASIALY 160 >gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 243 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 13/146 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193 ++ LD+V DP N+G I+R+A +F+ D +++ + + + +S+ GAL + + + Sbjct: 98 VVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVNFYNDK---IVRSSQGALFTVNLVNYAY 154 Query: 194 -NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATS 250 NL L+K GF+ S S + P+ + +N+KI +I G EG G ET+ Sbjct: 155 DNLHSVLKKYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSG----ASETSIK 210 Query: 251 MAH--LHMPGIIKALNVSNAAAVALY 274 +A +++P ++LNV+ A + LY Sbjct: 211 IADKLVYVPIDFESLNVAVCAGIVLY 236 >gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] Length = 271 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DP N G I+R+A A DG+I TK S ++ G+L H+P + Sbjct: 122 LLVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVTDV 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252 + + + G Q + + D + + K +LI G EG G+ + A + Sbjct: 182 SAEEVATFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEGGGVSEELLAAAEKV- 240 Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 ++ M G ++LNV ++AV LY + Q HFA Sbjct: 241 YIPMYGEAESLNVGVSSAVVLYEAVRQRHFA 271 >gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 271 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 10/193 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + VP + +D I G VH+G+ + P L L + L+ VL +++ N+G Sbjct: 79 IYCVPQKIMDDIAGFH-VHRGMLGIGERKALPSLQEFLQDLPERALVPVLCGISNNENMG 137 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A AF+ GII K + +S+ GA IPY + +++ ++ + F Sbjct: 138 AIFRNAAAFASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIESIIKTLSDANFH 197 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 LS + + L++ ALILG EG L P + + + M +LN++ A Sbjct: 198 LYALSPSAPRYLKEAKTMKHTALILGTEGDSL-PTHVLQKSEILRIPMAYGFDSLNIATA 256 Query: 269 AAVALYITQNHFA 281 + +AL HFA Sbjct: 257 SGLAL----AHFA 265 >gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] Length = 252 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 7/195 (3%) Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D+ LP+ V V P+ + K + QG+ E S + + L VL+ + Sbjct: 60 DFLERLPNQEKVVVVTPEVL-KELSDSPSSQGIVAEVQMDQSSLPETWQGPYL--VLEDI 116 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ++R+A A + + + + + ++ +S G+ H+P R ++ D L Sbjct: 117 QDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSMQGSHFHLPIYR-GSMADFLAS 175 Query: 202 MHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ DS + E + + AL++G EG+G+ +T + A + H+ MPG Sbjct: 176 FKQAGVRILATTLAEDSMDYRKIE-RPESFALVMGNEGQGISEQTAKKADDLLHIDMPGQ 234 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ AA + ++ Sbjct: 235 AESLNVAVAAGIMMF 249 >gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 345 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +KI L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKIVLVLGREYDYLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] Length = 254 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ + ++ D++ DP N+G I+R+A AF I T + + +++ G++ HIP Sbjct: 102 IKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIP 161 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I + + L K+ G + ++K + + +DK+A +LG E KG+ + Sbjct: 162 VIVTA--SQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGV--SVVDLV 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G ++LNVS AA + LY +Q Sbjct: 218 DDFVKIPMTGEAESLNVSIAAGIFLYESQ 246 >gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str. Loch Maree] Length = 259 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VNYSVL-KSIGNTENPQGIVSVINYFKREKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+ITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKLLQKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D I + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKDNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 289 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88 ++ + S +++ S + GV V L + R LL T+ LA L D A +P Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 80 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147 P+ + ++VG +++G+ + P + + + S+ + VL+ VND N+ Sbjct: 81 VPY--YRTSADVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGF 197 Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ S L + + + D++A+++GAEG GL P + + M +L Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257 Query: 264 NVSNAAAVALY 274 NV+ AAA+A Y Sbjct: 258 NVATAAALAFY 268 >gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 259 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 10/153 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190 + L +VL+ V DP N+G ++R+A A +G+ +++ P+ VL SA GA +P Sbjct: 108 TSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASA-GAWFEVPIA 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 S+L L + G Q + +D+ + A++LG EG GL P TS Sbjct: 167 VHSDLITQLSDIQKQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDL----TS 222 Query: 251 MA--HLHMP--GIIKALNVSNAAAVALYITQNH 279 +A H+ +P G +++LNV+ AA+ LY Q Sbjct: 223 LADYHIRVPLLGNVESLNVAICAALILYEAQRQ 255 >gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] Length = 269 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 2/154 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LS L N LLM+L+ + DP N+G ILR+ G+I ++ + + +S Sbjct: 108 LSEILSGEENP-LLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166 Query: 182 GALEHIPYIRISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P I ++++ + L + G T + ++E A ++G EG GL Sbjct: 167 GSVYRMPIIYVNSIEEEVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGL 226 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A ++ + M G +++LN + A+ + +Y Sbjct: 227 TEQLTESADTLIKIPMQGKVESLNAAMASGILMY 260 >gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 291 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 VL+ V +P N+GAI RSA A DG++ T S + + G + +P+ + Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200 Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + GF+T + + D P+ +E D++A+ILG+EG GL P+T + Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQTIAES 258 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+A+A + Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284 >gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115] gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115] Length = 397 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 15/155 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +D V+DPHN+GAI+RS+ D + ++ ++V +KS++G +E +P + Sbjct: 238 LGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVV 297 Query: 194 NLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIA---------LILGAEGKGLRPK 243 L+ + G+ T+ +SS KK +E+ +++++ LI+G+EG G+R Sbjct: 298 KPLQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKS 357 Query: 244 TQETATSMAHL-----HMPGIIKALNVSNAAAVAL 273 + ++ + L ++ + +LNVS A AV L Sbjct: 358 LLDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 392 >gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 344 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 14/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102 E +YG H A + I + ++ R L W A + TV + Sbjct: 106 EETRVYGEHACQALFQSRPESIVRAWFVQSVTPRFRDALKWMAANRKAY--HTVDDAELQ 163 Query: 103 KIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K G E H G+ +S L ++ L+ + +PHN+G I+RS F Sbjct: 164 KASGTEH-HGGVCFLIKKRVGMPVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRSCAHFG 222 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 223 AKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRKAGYTIVTTSSHQGI 281 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276 PL + K+ L+LG E GL T E + G +++LNVS A V L + Sbjct: 282 PLAKAELPAKMVLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLLAEWWR 341 Query: 277 QN 278 QN Sbjct: 342 QN 343 >gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163] gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 383 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G I+RS F G++ + + ES ++A G EH+ I Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + G+ + SS L Q K ++LG EG GL + Sbjct: 295 DFLSVLAEFRHAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + QN Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382 >gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] Length = 332 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ + +L+ + D N+GAI RSA A D ++ + + G + +P+ Sbjct: 177 GARRIAMLEGIVDHTNVGAIFRSAAALGVDAVLVAPTCCDPLYRRSVRVSMGTVFQVPWT 236 Query: 191 RISNLTDA-------LQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGL 240 RI N DA L+++H G+ T ++ SD PL+ +++AL+ G EG GL Sbjct: 237 RIGN--DAHDWPRAGLEELHRLGYATAAMALSDDSIPLDDARLAACERLALVFGTEGDGL 294 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T E + M + +LNV+ A+AVA + Sbjct: 295 TARTIEGCDYTVRIPMAHHVDSLNVAAASAVAFW 328 >gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 254 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 117/252 (46%), Gaps = 14/252 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 +++KK+ + + + LFL G H V AL + + + +L+ + W+A Sbjct: 13 KEWKKLLT-----KKGQEKMGLFLIEGFHLVEEALKSHA-PLVELIVDEKKEIPPSWNAG 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV T+ + + K + QG+A +D + + LL +D V DP N Sbjct: 67 ---HLPV-TIVTEEVMKAISDTETPQGIAAVCEQFSYGDIDWTQANVLL--IDAVQDPGN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A A D +I + + + + ++ G+L H+P IR NL + ++++ Sbjct: 121 IGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPIIR-GNLREWIERLCEKN 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++ + AL++G EG G+ K + T ++ + G ++LNV+ Sbjct: 180 VAIYGTALENGEDYRHIKPARPFALLVGNEGSGVHKKLLQMTTKNLYIPIYGQAESLNVA 239 Query: 267 NAAAVALYITQN 278 AA + LY Q+ Sbjct: 240 VAAGILLYHLQD 251 >gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM 519] gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii] Length = 261 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 9/248 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 YK S Q S++ + + G+ V A+ NP + I+ + ++ + + + + Sbjct: 12 YKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENP-KTIYLIFIQEDRINEPRYSNIIKN 69 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V P + + + QG+ + S +D + + +++LD + DP N+G Sbjct: 70 TGDKSFVVPSKLMETISDTVTSQGI-VAICNFESFMIDDIDFNNDILILDKIQDPGNLGT 128 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A +I TK + S+ + +SA G+L H+ + I + ++L + ++ Sbjct: 129 ILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDY-ESLNILKKNDYKI 187 Query: 210 IGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 I SS + L+ + + K+A++LG E G+ K + + + G ++LNV Sbjct: 188 I--SSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLNVG 245 Query: 267 NAAAVALY 274 A + +Y Sbjct: 246 IAGGILMY 253 >gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 266 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 12/195 (6%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P+ V T+ ++VG + +H+GL A APL +A+ +++ ++VL+ V D NIG Sbjct: 69 PMYEVDRATLAEVVGFD-MHRGLVAAADRVAPL--EVSEAISDAKTVVVLEGVGDHENIG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHS 204 ++ R+A D ++ + + + G + +P+ R Q+ + Sbjct: 126 SLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDGGFTTWQRNLDLLAD 185 Query: 205 WGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF + L+ D++ E +DK+AL++GAEG GL A + M + Sbjct: 186 AGFHLVSLTPDNEAVHLAEALAGHDKVALMVGAEGPGLTEHAMRATHVRARIPMAEGTDS 245 Query: 263 LNVSNAAAVALYITQ 277 NV+ AAA+A Y Q Sbjct: 246 FNVATAAAIAFYERQ 260 >gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 244 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 35/253 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100 +YG H V F+LL + + W D + + F +K V Sbjct: 5 LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKKTKIKVNVVSENK 53 Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D+++ + HQG+ + +P + + + L+++LD ++ +N GAI+RS Sbjct: 54 LDQLLETQTQHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSC 113 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211 + DGII + ++ + K++SG+ I + +NL +A++ + + W + T Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYAT-N 172 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269 L+ +S + + N K A+I+G E KG+ T S ++++P I + N S A Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVAC 229 Query: 270 AVALYITQNHFAK 282 ++ + N+ K Sbjct: 230 SIICFWIANYLNK 242 >gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 262 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + D V DP N+G I+R+A A +GI+ +K + +S G+L ++P Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYY 169 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + ++ + GF I S +S K +E KI L +G EG G+ + + A Sbjct: 170 DDDEFSLIKSLKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRR 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 230 VKIPMPGGAESLNVAIATSIIIY 252 >gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 345 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 129 VRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 V N+Q ++ L+++ +PHN+G ++RS F G++ + + ES ++A G E Sbjct: 190 VGNAQAQDCVLALENIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAE 248 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ I ++ + L G+ + S D KPL +K+ L+LG E GL + Sbjct: 249 HVQPITGDSIVNVLDDFRQAGYTVVTTSGDRGKPLFATALPEKMVLVLGQEADGLPDAAR 308 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + + G +++LNVS + L + QN Sbjct: 309 DPDDLCVKIDGTGNVESLNVSVVTGILLAEWWRQN 343 >gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 345 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDFLPEAAREPGDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381] gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis ATCC BAA-381] Length = 226 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG + + ++ ++ L++L +++D NIGAI+RSA A D I + Sbjct: 61 HQGFLAKVDEFEFCEIADLKEAKFLVILWNLSDIGNIGAIVRSAYALGADAICVVSKNLQ 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229 E + +++SGA I RI + + ++ GFQ + D ++IK KI Sbjct: 121 IEGVI--RASSGAAYEIKIARIDDGAGLINELKQIGFQIFAATMDG-----EDIKTAKIG 173 Query: 230 ---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ALILG+EG+G+ K + M +LNVS A A+ Sbjct: 174 AKTALILGSEGEGIPQKIVTKCDHSVSIKMKHGWDSLNVSAAFAI 218 >gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] Length = 275 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 16/162 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV ++ ++ LD + DP N+G +LR+A+A + + P VL ++++GA+ + Sbjct: 104 AVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVL-RASAGAILQL 162 Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQEIKNDKIALIL 233 PY R + L + L+ S G Q + ++ S P Q L+L Sbjct: 163 PYQRFGSSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKPTVLVL 222 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 G EG GL P+ Q T L +++LNV+ A AV L + Sbjct: 223 GNEGSGLHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLL 263 >gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 345 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPGDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] Length = 245 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 +VL+ V DP N+G I+R+A A +G+ +++ + + +S G+ H+P R + Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFNGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L LQ+ + I ++ SKK ++ + ++++AL+LG EG+G+ + A + Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTYHERLALVLGNEGQGISAEMVALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 345 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E + Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPSDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G I+RS F G++ + + ES ++A G EH+ I Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + S G+ + SS L + K ++LG EG GL + Sbjct: 295 DFLSVLAEFRSAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + QN Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382 >gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] Length = 268 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + LL+ LD V DP N+G ILR+A F D +I + + +A + +S++G+L Sbjct: 114 DEKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYA 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P+ + L AL+++ + G+ I S D + K L++G E G+ Q Sbjct: 174 LPHYTVERLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQN 233 Query: 247 TATSMAHL-HMPG--IIKALNVSNAAAVAL 273 A + + H G +++LN S +AA+ + Sbjct: 234 LAERLVRIPHGGGKSRVESLNASVSAAILM 263 >gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp. subtilis str. 168] gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp. subtilis str. SMY] gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis] gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP +R N Sbjct: 106 VLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVR-RN 164 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ + G + G + + P ++ +++ ALI+G EG G+ E ++ Sbjct: 165 LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYV 224 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AAA+ +Y Sbjct: 225 PLYGQAESLNVAVAAAILVY 244 >gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905] Length = 345 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EHI I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 248 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP +R N Sbjct: 106 VLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVR-RN 164 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ + G + G + + P ++ +++ ALI+G EG G+ E ++ Sbjct: 165 LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYV 224 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AAA+ +Y Sbjct: 225 PLYGQAESLNVAVAAAILVY 244 >gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 277 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LS L+A S + +L+ + D N+GAI+RSA D ++ T + A+ + Sbjct: 118 LSQVLEA---SSRVAILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVSM 174 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGK 238 G + +P++R+ + + ++ + G+Q + + +D PL Q K+A+ILG EG+ Sbjct: 175 GTVFDLPWVRMLSWPEDIRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEGR 234 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + E + M + +LNV A+A+A + Sbjct: 235 GVTAQALEAVDQTVIIPMHREVDSLNVGAASAIAFW 270 >gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] Length = 257 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + I +L+ + DW Sbjct: 16 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVITELIVSDQTDLPKDWTVTD 69 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++LD + DP N+ Sbjct: 70 VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEIALTDGKFLLLDGLQDPGNL 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 123 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ P + ALI+G EG G+R + ++ + G ++LNV+ Sbjct: 182 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEVLAKCDQNLYIPIYGGAESLNVAV 241 Query: 268 AAAVALYITQNHFA 281 AA + Y Q+ A Sbjct: 242 AAGILTYYLQSPVA 255 >gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 287 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 7/197 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + ++ G L P L D ++ + VL++V +P NIGA+ Sbjct: 79 IPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGAV 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWG 206 RSA A D ++ T S + + G + IP+ R S + ++ G Sbjct: 139 FRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGMG 198 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T ++ D ++ + DK+A+ILG EG GL +T + M + +L Sbjct: 199 FKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDSL 258 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A+AV + F Sbjct: 259 NVAAASAVMFWQIGRAF 275 >gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 291 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 VL+ V +P N+GAI RSA A DG++ T S + + G + +P+ + Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200 Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + GF+T + + D P+ +E D++A+ILG+EG GL P+T + Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQTIAES 258 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+A+A + Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284 >gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] Length = 227 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 2/161 (1%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG L+ L+ ++ S +++L ++D NIGAI R+A A +I Sbjct: 61 HQGFLLDIKEGSFANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEKLA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 121 MEGVI--RTSSGAALDLPIVISNDALSVINELKQIGFYFYASDGSGKEIHNVKINNGKKV 178 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 179 LVLGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAI 219 >gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 285 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 17/152 (11%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---- 189 ++VLD + DP N+G + R+A+A D + P VL +S++GA+ +P+ Sbjct: 112 FILVLDRLQDPGNVGTLFRTALAADIDALWLALGADPLSQKVL-RSSAGAVLKLPFERLA 170 Query: 190 ----IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKI---ALILGAEGK 238 I I L D L+ + G+Q + + + KP + E+ + D I L+LG EG Sbjct: 171 DSEDIAIDGLVDKLRGVSQEGYQVVA-TYVAGKPSDFEVIPYWELDWIKPTVLVLGNEGS 229 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL P+ Q T L +++LNV+ AAA Sbjct: 230 GLSPRIQACCTHGVTLPHSEAVESLNVAVAAA 261 >gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435] Length = 344 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 15/155 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +D V+DPHN+GAI+RS+ D + ++ ++V +KS++G +E +P + Sbjct: 185 LGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVV 244 Query: 194 NLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIA---------LILGAEGKGLRPK 243 L+ + G+ T+ +SS KK +E+ +++++ LI+G+EG G+R Sbjct: 245 KPLQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKS 304 Query: 244 TQETATSMAHL-----HMPGIIKALNVSNAAAVAL 273 + ++ + L ++ + +LNVS A AV L Sbjct: 305 LLDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 339 >gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 254 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++ D++ DP N+G I+R+A AF I T + + +++ G++ HIP Sbjct: 102 IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP 161 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ + L K+ G + ++K + + +DKIA +LG E KG+ + Sbjct: 162 V--IATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKIAFVLGNEAKGV--SVVDLV 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNVS AA++ LY +Q Sbjct: 218 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 248 >gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001] Length = 588 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 64/284 (22%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV-----PPQT 100 FL+G V AAL N RK+++L + KN DW +K + Sbjct: 274 FLFGRSVVKAALKNSKRKLYRLYVYQGSNKNTTKDDDWILASAEKKNIKVTRIYENDQKL 333 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV---------------RNSQ------------ 133 +DK+ K H GL +E +PL L + R S+ Sbjct: 334 LDKM-SKGRPHNGLVIEASPLPQLPLTGLGAESSELRGYPVHVARQSKEESEINGTEGFI 392 Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L+++L+ + DP N+GAILR+A + T+R S + + + K+A+GA Sbjct: 393 PCRPGSPKPLVLLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAGAA 452 Query: 185 EHIPYIRISN---LTDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDK------IA 230 E + + + DA QK W T GL +DS++ + I++ K Sbjct: 453 EELRLFSVEDPVAFLDASQKA-GWASYAAVAPTAGLRNDSRQWTPEGIEDAKPLTKEPTI 511 Query: 231 LILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAV 271 LILG EG GL ++ A+ ++ + M + +LNVS A A+ Sbjct: 512 LILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATAL 555 >gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 196 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188 R + L +V+++++DPHN+ AILRS AF + Y+ + L K +SG A + + Sbjct: 20 RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R + + GF+ + S +++ PL++ K A+ILG E G+ Sbjct: 78 TVRHKDAASLAAALKGQGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVDEDLAPH 137 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M G++++LNVS AAAV LY Sbjct: 138 VDGALYIPMMGMVQSLNVSVAAAVILY 164 >gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 307 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 16/254 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84 DY+ + ++R P LF+ G + AL P+R LA LD D Sbjct: 54 DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVEQLADLDTGD 112 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVND 143 A PV P + ++ G VH+G+ PT D + ++ +++L+ VN+ Sbjct: 113 A------PVYAAAPDVLRRVTGFH-VHRGVLASFRRRRQPTATDLLATARRVVILEDVNN 165 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+I R+ D ++ + + + + G + +PY + DAL ++ Sbjct: 166 HTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAMLGPWPDALAEVR 225 Query: 204 SWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF + L+ + P++ + + + AL+LGAEG GL + E + + M + Sbjct: 226 AAGFTVLALTPAPDAVPIQRLEPGQRSRAALLLGAEGSGLTREAMEASDVRVVIPMRRGV 285 Query: 261 KALNVSNAAAVALY 274 +LNV+ A AVA + Sbjct: 286 DSLNVAAATAVACW 299 >gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892] gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892] Length = 505 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 73/242 (30%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL------------------ 135 T+DK+ GK H G+ LE +PL P T+ + NS L Sbjct: 235 TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQPEEQAAVNGTDG 293 Query: 136 -------------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++LD + DP N+GAI RSA F D I + + S S V+ Sbjct: 294 HIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVV 353 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS----------------DSKKPL 220 K+A+GA E IP + + +++ + + G++ + +S + L Sbjct: 354 MKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYTRKIPVINSLEAL 413 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAA 269 E+ L+LG EG GL+ K + A S + +PG + +LNVS A+ Sbjct: 414 ASELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANIRDDTAGVSSLNVSVAS 471 Query: 270 AV 271 A+ Sbjct: 472 AL 473 >gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 23/251 (9%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 +D+KK+ + ++++ N FL G H V AL +P + ++L D D + Sbjct: 13 KDWKKLHTKKERTK-----TNTFLIEGEHLVEEALKSPG-TVKEILIKDETKIPSDLDVS 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQLLMVLDHVND 143 + + + E Q A+ P L SP Q ++++D V D Sbjct: 67 IQ----CYVLSEDAFSAVTETETPQQIAAVCHMPEEKLASP--------QRVLLIDAVQD 114 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A D ++ + + + +SA G+ HIP +R NL + ++ Sbjct: 115 PGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPVVR-RNLHTYVDELK 173 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G + G + + P + + ALI+G EG G+ E ++ + G ++L Sbjct: 174 AEGVKVYGTALQNGAPYRDMSQAEFFALIVGNEGAGVNAALLEKTDLNLYVPLYGQAESL 233 Query: 264 NVSNAAAVALY 274 NV+ AAA+ +Y Sbjct: 234 NVAIAAAILVY 244 >gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] Length = 345 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EHI I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 254 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253] Length = 345 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + +K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRLAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 254 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + V P + KI G +H G + APL + L++LD + + HN Sbjct: 53 RCVEPAELAKIAGT--LHHGGVVAVVDEPALRAPLPREMRAWAKAGTPLLLLDRIGNAHN 110 Query: 147 IGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 +GAI R+A F II S P ESA + A G LEH+ R+ L ++ Sbjct: 111 VGAIARTAAFFGVAHIIIPAHASAALPGESA--HRIAEGGLEHLTLWRVPTLARFCAELR 168 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETATSMAHLHMPG 258 G++ +G ++ + AL+LG E GL + + T + + G Sbjct: 169 EAGYEVVGAATRGGALTLPALTGGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSG 228 Query: 259 IIKALNVSNAAAVALY 274 I++LNVS AAA+ ++ Sbjct: 229 KIESLNVSAAAAILMF 244 >gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 246 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191 ++VLD + DP N+G + R+A+A I+ P VL +++SG++ H+P+ R Sbjct: 78 FILVLDRIQDPGNMGNLFRTALAAGVSKILLAGGAHPLGQKVL-RASSGSVFHLPFKRFD 136 Query: 192 ------ISNLTDALQKMHSWGFQTIGLSS------DSKKPLEQEIKNDKIALILGAEGKG 239 I++L +L + GFQ I SS S+KP + + ALILG EG G Sbjct: 137 GGEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWEIDWSKPTALILGNEGNG 196 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + QE + ++++LNV+ A Sbjct: 197 IHKRIQEAFNETITIPHSELVESLNVACVAV 227 >gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] Length = 264 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 13/211 (6%) Query: 75 KNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132 KN L L D A H + V+ ID V + V +A+ + P +++V Sbjct: 60 KNVLDLLTLDSAQSAHTYIVQDPVFDKIDNTVNGQGV---VAIVSKP--KHNIESVSIED 114 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--- 189 L + LD V DP N+G I+R+AVA GI K + +S AL IP Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYED 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +S L D + + + + T + ++ +P + L+LG EG G+ P+ T Sbjct: 175 ITLSMLHDIVAESNMTTYVT---ALENSEPYHSVNYAKRTMLVLGNEGNGVTPEVMNLCT 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNVS AAA+ +Y Q Sbjct: 232 NRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262 >gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 269 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 5/178 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV P ++ + G +H+G LA P L D + ++ ++V++ V D N+GAI Sbjct: 79 PVYVAEPAVVESMTGFH-LHRGALAAMQRPELPAVADLLGGARRVVVVEDVVDHTNVGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RS A D ++ T R + + + G + +P+ RI + ++ GF Sbjct: 138 FRSVAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQGAGFTVA 197 Query: 211 GLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ Q++ D ++AL+LG EG GL P+T E A + M G + +LNV Sbjct: 198 ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVRIPMSGGVDSLNV 255 >gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] Length = 265 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] Length = 262 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + D V DP N+G I+R+A A +GI+ +K + +S G+L ++P Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYY 169 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + ++ + GF I S +S K +E KI L +G EG G+ + + A Sbjct: 170 DDDEFSLIKSLKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRR 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ A ++ +Y Sbjct: 230 VKIPMPGGAESLNVAIATSIIIY 252 >gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328] Length = 256 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186 V++ Q+L L+++NDP N+G I+RSA AF + I+ + ++ +SA G+L + Sbjct: 106 VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 164 Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243 I Y I + L+K S GF+ L +S+ L EIKN +K LI+G E G+ + Sbjct: 165 ISYENI----NVLEKYKSKGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 218 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A + M + ++LN S AA+++++ Sbjct: 219 IKKYADEFLIIPMDNVTESLNASIAASLSMF 249 >gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1] gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1] Length = 302 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 15/198 (7%) Query: 90 PFPVKTVPPQTIDKIVGKEAV----HQG-LALETAPLLSPTLDAVRNS---QLLMVLDHV 141 P +VP ID+ +GKE H+G LA +P + P L+ R+S L + L + Sbjct: 94 PLIPDSVPVYLIDRELGKELAGYDFHRGVLAHGFSPAIEP-LEKFRDSPQSSLALALVGL 152 Query: 142 NDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +DP N+G++LRSA A D ++ SP V+ S + H Y R N L+ Sbjct: 153 SDPENVGSLLRSAAALGVRDILLGPHTISPMTRRVIRVSMASVFRHRFY-RFDNPVGQLR 211 Query: 201 KMHSWGFQTIG-LSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + G +I L D+ P L I++ + L++G E GL + E AT + L M Sbjct: 212 DLANAGIASIATLLDDTAIPLIDLSNAIQSKRRILMVGNEANGLPREIAEAATHRSTLPM 271 Query: 257 PGIIKALNVSNAAAVALY 274 +LNV A+A+ LY Sbjct: 272 RNDTDSLNVGVASAIFLY 289 >gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 303 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + + G E L P + +N++ + VL+++ D N GAI Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCKNARRIAVLENIADVSNTGAI 165 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201 +RSA A D ++ T PS L + A G + IP+ I Q Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221 Query: 202 MHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++S GF+T ++ S K L+ E +++A+ILG+EG GL KT + + Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSE---ERLAIILGSEGYGLSQKTIDGCDYTVKIP 278 Query: 256 MPGIIKALNVSNAAAVAL 273 M + +LNV AAAVA Sbjct: 279 MYHGVDSLNVGAAAAVAF 296 >gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 285 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 2/147 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+V + ++P N+GAI+R A AF G++ K S + + + G + + Sbjct: 139 LLIVCPNCDNPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIFGLTIRESR 198 Query: 194 NLTDALQKMHS-WGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L LQ++ + +GF+T+G + S+S L+ + ++AL+LG E +GL + + + Sbjct: 199 HLDHDLQRLKTEFGFETMGAILSESAVSLKNVQRPHRLALLLGNEAEGLTTEWMDHCNHL 258 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 + MP + +LNV+ AA + LY N Sbjct: 259 VTIPMPPDVDSLNVAVAAGIFLYQLTN 285 >gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] Length = 265 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] Length = 243 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186 V++ Q+L L+++NDP N+G I+RSA AF + I+ + ++ +SA G+L + Sbjct: 93 VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 151 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243 I Y I + L+K S GF+ L +S+ L EIKN +K LI+G E G+ + Sbjct: 152 ISYENI----NVLEKYKSNGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 205 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A + M + ++LN S AA+++++ Sbjct: 206 IKKYADEFLIIPMDNVTESLNASIAASLSMF 236 >gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] Length = 175 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HN+G++LRS AF + + + SA + K+A GA + + + + Sbjct: 17 LIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYFA 76 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 TDA+ ++H+ G + + + + Q + + + A++LG E KG++ + Sbjct: 77 QTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEVGTRYAVVLGNEVKGVQQTVVDLCDG 136 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS AA + ++ FAK Sbjct: 137 CLEIPQFGTKHSLNVSVAAGIVVW----EFAK 164 >gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 245 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 ++L+ V DP N+G I+R+A A DG+ +++ + ++ +S G+ H+P R I Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDIY 163 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + +Q+ ++ T +S D K QE AL++G EG+G+ + A + Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTTLADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 251 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +LD + DPHN+GAI+R+A G+I K + +A +A++++GA+ + P +++ Sbjct: 97 FIFILDGIEDPHNLGAIIRTANLSGAHGVIIPKHRAVGLTAAVARASAGAINYTPVAKVT 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ +Q++ G + +K ++ I L++G EG G+ ++ +A Sbjct: 157 NINKTMQELKDAGMWFVCADMGGEKMYNIDLTG-SIGLVIGNEGDGVSESVKKNCDFIAS 215 Query: 254 LHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 + M G I +LN S A V Y I + AK Sbjct: 216 IPMNGDIDSLNASVACGVLAYEIVRQRIAK 245 >gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 270 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 8/215 (3%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLD--WDANLPHP 90 QS ++ + + + + +YG V ALN+P+ + +++ NA LD A Sbjct: 20 QSGADRAELSPRDKWITIYGRKPVLEALNDPALSVAKVVVADNAGGGSLDEILAAARRLG 79 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQL----LMVLDHVNDPH 145 PV+ + + G QG+ + AP ++P + +R + +LD V +P Sbjct: 80 TPVERASSTRVKWLAGNGKQDQGVVADVDAPRMTPLPNFLRQRGRRPTKVFLLDGVTNPG 139 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A DG+I + +P ++ K+++G P + A+ + + Sbjct: 140 NVGMILRTATGAGFDGVILPRAGTPHVGPLVIKASAGVAFQAPIVNAPTAKGAVDALRAA 199 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ GLS+ S++ L + + +LG E G+ Sbjct: 200 GYEIYGLSARSQRSLFRTELAPRAVFVLGGETHGI 234 >gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1] gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1] Length = 254 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 272 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 21/184 (11%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 T PQ I +V K Q L L TA L++V+D V DP N+G I+RSA Sbjct: 91 TETPQGIFAVVRKS--EQSLELITA----------EEWDLVVVVDGVQDPGNLGTIIRSA 138 Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 A I+ T Y+P +S G+L H+P I ++L D L K G Q + Sbjct: 139 DAVGASAIVLGRGTVDIYNPKA----IRSTMGSLFHLPVIE-ADLADLLPKAVKAGIQVL 193 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++K + +I+G EGKG + E AT + M G ++LNV+ AA Sbjct: 194 CTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMIIPMKGHAESLNVAMAAT 253 Query: 271 VALY 274 V L+ Sbjct: 254 VLLF 257 >gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] Length = 274 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A+ PL P + ++ + VL++V +P N+GAI RSA A + DG++ T S Sbjct: 104 AMYRPPLPGPE-EICEGARRIAVLENVMNPTNVGAIFRSAAALNMDGVLLTSACSNPLYR 162 Query: 175 VLAKSASGALEHIPYI----RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKND 227 + + G + IP+ R+S + + + GF T ++ +D ++ + + Sbjct: 163 RAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLRELGFATAAMALNDDSVSIDDSGLMSEE 222 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K+A+ILG EG GL T + M + +LNV+ A+AVA + Sbjct: 223 KLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDSLNVAAASAVAFW 269 >gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2] gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2] Length = 243 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 11/145 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193 ++ LD+V DP N+G I+R A +F D +++ + + + +S+ GAL + + + Sbjct: 98 VVFLDNVQDPGNVGTIIRVAKSFGFDTVVSNVNFYNDK---VIRSSQGALFTVNLVNYNY 154 Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETAT 249 NLT+ L K GF+ S D K +E E ++DK ++ G EG G+ + A Sbjct: 155 DNLTNILLKYKQNGFKIYATSLD-KSSVEIEKVKFESDKAVIVFGNEGSGISSALADIAD 213 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + +++P ++LNV+ A + LY Sbjct: 214 ML--IYVPINFESLNVAICAGIVLY 236 >gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 217 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++ D++ DP N+G I+R+A AF I T + + +++ G++ HIP Sbjct: 65 IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP 124 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ + L K+ G + ++K + + +DK+A +LG E KG+ + Sbjct: 125 V--IATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNEAKGV--SVVDLV 180 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNVS AA++ LY +Q Sbjct: 181 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 211 >gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. Langeland] gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. 230613] Length = 259 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+ITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + I + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 275 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 8/191 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ T + + + G E L P + RN++ + VL+ + D N+GAI Sbjct: 80 PIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELCRNARRVAVLEGIVDSTNVGAIF 139 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206 RSA A + D ++ + + G + +P+ +I L ++++ G Sbjct: 140 RSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEKGLAQLNALG 199 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F+T ++ SD ++ E + K+A++LG EG GL T + + M + +L Sbjct: 200 FKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLSHTTIASCDYTVKIPMSHGVDSL 259 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 260 NVAAASAVAFW 270 >gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200] gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200] Length = 246 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTAEAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ A + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243 >gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 289 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 123/266 (46%), Gaps = 12/266 (4%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TKN 76 S A++ R + +++ Q+ ++ + + GV ++ A+++ +I LL+ + Sbjct: 16 SPPARIERRNALFQQWQALLTNRTKRTRSGEMLIQGVRPITQAISH-GVEIRALLSDGRE 74 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAVR--NSQ 133 +R D P PV + P+ + ++ +E + LAL P S +LD + + Sbjct: 75 QPSRWAQDLLANAPAPVVVLAPELMAELGEREDGAPELLALAAVP--SDSLDRLEPTGAS 132 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V D + P NIG++ RS A D ++ T + + ++++G+L +P +R+ Sbjct: 133 LVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRASTGSLFAVPVMRLP 192 Query: 194 N---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + D L + + G + +GL L L++G E G+ +E Sbjct: 193 SHREVLDWLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVGNETVGMSSGWREAC 252 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +A + M G +LN S A +VALY Sbjct: 253 DVIAEIPMTGAASSLNASVAGSVALY 278 >gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336] gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336] Length = 350 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD + L+VL+ V +PHNIG I+R+ V + ++ SAV + A G +E Sbjct: 196 LDIPQQKNCLLVLNGVRNPHNIGGIIRTCVCYGISAVVIDD-VELLHSAVAMRVAEGGME 254 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILG-AEGKGLRPK 243 +I + I AL K+ G+Q + LSS+ K ++Q +DK+A +L A+ + L K Sbjct: 255 YIHPLEIDRTETALVKLRQAGYQIVHLSSNKHAKTIKQLQLDDKVAFVLSEADTESLADK 314 Query: 244 TQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273 E + +L + +K LNVS A + L Sbjct: 315 ADE----LINLSLVNPLKHGLNVSVATGILL 341 >gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] Length = 270 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/256 (20%), Positives = 115/256 (44%), Gaps = 8/256 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-- 82 R + K+++ N K ++ + + + G+ V A+N I ++ ++ A R Sbjct: 12 RENECIKRVKKLNDK-KYREEFRSFIIEGLKLVKEAINYQIECINLVIFSQQAKDRYQEF 70 Query: 83 -WDA-NLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 W+ L +K V P + + + + QG+ L + ++ ++N + ++V Sbjct: 71 YWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI-LAECNFVDKDINFIKNLKRVVVA 129 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+G ++R A AF D ++TTK + ++ G+L H+ +R + Sbjct: 130 DKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAEEGKL 189 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + F + + + + + K +++G E +G+ + A + M G Sbjct: 190 IKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGNESEGVSDSFAKVAARKIKIPMAG 249 Query: 259 IIKALNVSNAAAVALY 274 ++LN + AA++ LY Sbjct: 250 KAESLNAAVAASIVLY 265 >gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae] gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae] Length = 243 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 11/145 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193 ++ LD+V DP N+G I+R A +F D +++ + + + +S+ GAL + + + Sbjct: 98 VVFLDNVQDPGNVGTIIRIAKSFGFDTVVSNVNFYNDK---VIRSSQGALFTVNLVNYNY 154 Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETAT 249 NLT+ L K GF+ S D K +E E ++DK ++ G EG G+ + A Sbjct: 155 DNLTNILLKYKQNGFKIYATSLD-KSSVEIEKVKFESDKAVIVFGNEGSGISSALADIAD 213 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + +++P ++LNV+ A + LY Sbjct: 214 ML--IYVPINFESLNVAVCAGIVLY 236 >gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357] gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357] Length = 495 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 92/314 (29%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81 + P + F+YG V AAL R++++L + K AL +L Sbjct: 171 TTPASEFIYGTSAVEAALRCSRRRMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAF 230 Query: 82 -DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEAVHQGLALETA 119 WD A PH P P +K+VP + V G Sbjct: 231 GGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----GVELGAQSREE 286 Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 L++ T D ++ ++++LD + DP N+GAI+RSA D II R S Sbjct: 287 ALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAP 346 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S V K+++GA E++ + +SN D +Q K + W F ++D+ P + + I Sbjct: 347 LSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGPASKYVDTASI 402 Query: 230 ------------------ALILGAEGKGLRPKTQETATSM-----AHLHMP-GI------ 259 +++G+EG GL + A S+ A L P G+ Sbjct: 403 VEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSR 462 Query: 260 IKALNVSNAAAVAL 273 + +LNVS AAA+ + Sbjct: 463 VDSLNVSVAAALLM 476 >gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] Length = 213 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 7/208 (3%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 IF + K+ D + L + V Q + K++ QG+ TA + + L+ Sbjct: 4 IFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVL-KLLSDTETPQGI---TAVVDNKELN 59 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 +++D V DP N+G I+R+A A G+I TK + +S G++ H+ Sbjct: 60 VENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHV 119 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQE 246 P I+ ++L + + + GF + S ++ K + ++K KI + +G EG G+ + Sbjct: 120 PVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKI-IAVGNEGSGISDEIYN 177 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + MPG ++LNVS AA V ++ Sbjct: 178 MADIKVKIPMPGGAESLNVSVAAGVMMF 205 >gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda FL6-60] Length = 393 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 7/161 (4%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + DAV ++ L++V +PHN+G I+R+ F GII + + ES ++A Sbjct: 235 LANQAEDAV---DCVLALENVANPHNLGGIMRTCAHFGIRGIIAPE-SAALESGAAVRTA 290 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G EH+ I + + AL G+ + SS L + KI L++G EG G Sbjct: 291 EGGAEHVQAIDAEDFSAALDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDG 350 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 L T + + G +++LNVS A + L + QN Sbjct: 351 LSDGTLQQGDLSVSIGGTGSVESLNVSVATGIMLAEWWRQN 391 >gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] Length = 253 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 ++LD V DP N+G I+R+A A D I+ T Y+P + +SA G+ H+P I Sbjct: 109 FLMLDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPK----VLRSAQGSHFHLPII 164 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + NL+ + ++ + G + ++ D ALILG EG G+ P ++ Sbjct: 165 K-GNLSSWIDRLRTEEIPVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILDSTDQ 223 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA + +Y Sbjct: 224 NLYVPIYGKSESLNVAIAAGILMY 247 >gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987] Length = 254 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + +L+ + DW N Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--VGVVTELIVSDQTDLPKDWTVND 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P++I K++ + QG+ A+ + + L+ LD + DP N+ Sbjct: 67 VEMYIV----PESIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 237 AVAAGILTYYLQSPVA 252 >gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays] Length = 345 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242 Query: 194 -----NLTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241 +T KM + ++ SSD+ K L + N+ + L+LG+EG GL Sbjct: 243 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 299 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +T + A + ++ M G ++LNVS A + L++ Q Sbjct: 300 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b] gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b] Length = 359 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +S L ++ L+ V++PHN+G I+RS F G++ S ES ++A Sbjct: 201 VSEWLSQAEAKDCVLALEDVSNPHNLGGIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 259 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G EH+ I + + L+ G+ + SS PL + K+ L+LG E +GL Sbjct: 260 GGAEHVQAISGESFSAGLEAFRKAGYTIVTTSSHEGTPLAKAELPAKMVLVLGQEREGLS 319 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + + G +++LNVS A + L + QN Sbjct: 320 DSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEWWRQN 358 >gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] Length = 236 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 72 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ A + ++ Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 233 >gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 260 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 26/254 (10%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIF----QLLATKNALARLDWD 84 K ++S + +RH + + + GV V+ AL + R + QL T A L+ Sbjct: 13 KWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRL 72 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +LPH FP P I E +A T P L P L +VLD + DP Sbjct: 73 RHLPHCFPAT---PAVIVAAADTEQPQGVVAAVTWPELPP------RPGLRLVLDAIQDP 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G +LRSA A ++ + +A++A GA +P +R+S ++ S Sbjct: 124 GNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVP-LRVSPWETIRAELQS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH----LHMPGII 260 + S ++P ALI+G E GL E A ++AH + M G I Sbjct: 183 --YTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGL----SEPARALAHQTITIPMSGSI 236 Query: 261 KALNVSNAAAVALY 274 ++LN A ++ L+ Sbjct: 237 ESLNAGVAGSIILF 250 >gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 269 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---R 191 +++L V DP N+G ++RSA AF G++ +K + + +S+ G+L HIP + Sbjct: 116 ILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSE 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-----KTQE 246 I L LQ+ F G S SK + ++ N +AL +G E +GL+ K + Sbjct: 176 IDQLFQVLQREQY--FILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQ 233 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LN A ++ +Y Sbjct: 234 VRHQKVEIPMFGKAESLNAGIAGSIMMY 261 >gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] Length = 282 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 6/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + ++ G L P + + ++++ ++V+ V D NIGAI Sbjct: 78 IPVYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T + + + G++ +P+ + L+++ GF+T Sbjct: 138 FRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWADRPLECLKEL---GFKTA 194 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +D PL+ + + ++AL++G EG GL + A +A + M + +LNV+ Sbjct: 195 ALALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAA 254 Query: 268 AAAVALY 274 A+AVA + Sbjct: 255 ASAVAFW 261 >gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9] gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9] Length = 349 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347 >gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] Length = 266 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + L++VLD + DP N+G I+RSA A G++ + + + +S G+L H+P Sbjct: 110 LRENGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247 + +L L + G + + + ++ E + K +++G+EG+G+ P+ Sbjct: 170 VLE-GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW-IVIGSEGRGVSPEVAAL 227 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + MPG ++LN + AA+V +Y + Q +A Sbjct: 228 VDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYA 263 >gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] Length = 236 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 72 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ A + ++ Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 233 >gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] Length = 349 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347 >gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 266 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%) Query: 112 QGLALETAPLLSPTLDAV-------RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 QG+ L A LS +L+ + RNS LM+L+ + DP N+G ILR+ G++ Sbjct: 89 QGI-LAVAAQLSHSLNEIVKGDGIKRNSPAHLMILETIQDPGNLGTILRAGEGAGITGVV 147 Query: 164 ----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 T Y+P + +S G++ +P++ + + AL ++ + G + K Sbjct: 148 MNSATADIYNPK----VIRSTMGSIYRVPFVYVEDWQQALGRIKAEGIRLYAAHLKGKVS 203 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E E ++G E GL +T A + M G +++LN + AA++ ++ T Sbjct: 204 YENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQVESLNAAVAASILMFET 260 >gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T] gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T] gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017] gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2930-71] gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A] gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989] gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A] gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989] gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W] gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11] gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167] gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] Length = 349 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347 >gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] Length = 349 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347 >gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 264 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL +VL+ + DP N+G I+R+AVA GI + ++ + +S++G P + Sbjct: 111 QLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVE 170 Query: 193 SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S+L+ ++K + G + I L + +K E + + ++LG EG GL P+ A Sbjct: 171 SDLSALVKKYQAQGVKAIATLPTATKNHWEIDFTRPTL-ILLGNEGAGLSPQLATLADET 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + G +++LNV+ A AV LY Sbjct: 230 VKIPLFGGVESLNVAIATAVILY 252 >gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536] gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972] gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101] gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli 536] gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972] gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15] gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101] gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU 83972] gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327] gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 60-1] gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli AA86] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 254 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++ D++ DP N+G I+R+A AF I T + + +++ G++ HIP Sbjct: 102 IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGSIFHIP 161 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I + + L K+ G + ++K + + +DK+A +LG E KG+ + Sbjct: 162 VIAAT--SQILLKLKQRGIKVFATYLKAQKLVHECNISDKVAFVLGNEAKGV--SVVDLV 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LNVS AA++ LY +Q Sbjct: 218 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 248 >gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058] Length = 246 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L++V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 D ++ S + + S +E+ N + L++G EG+G+ P+ E A + H+ Sbjct: 164 ADFIRLARSSSLPILASTLSSTSIDYREVVNKESFVLVMGNEGQGISPEMTEAADLLVHI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 224 SMKGQAESLNVAVAAGILIF 243 >gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae OXC141] gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] Length = 246 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ A + ++ Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243 >gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] Length = 247 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 100 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 159 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 218 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + G + LN+S A V L Sbjct: 219 IDGTGNVAGLNISVATGVLL 238 >gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] Length = 264 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 22/263 (8%) Query: 20 YAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATK 75 Y L H D K + Q +R + + + L G+H + AAL P+ Q + Sbjct: 5 YRSLTSPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVPA----QCFINE 60 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLL---SPTLDAVRN 131 AL R + L PQT+ +V EA+ L +L +AP L P R Sbjct: 61 AALGRAEVSVLLARL-------PQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPPRR 113 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S ++L+ + DP N+G ILRSA A + +K + S + ++ GA + Sbjct: 114 SGSCLLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHE 173 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++L + L G + + S+ Q+++ D +A + G EG G+ + A Sbjct: 174 AADLAEVLGGF--AGRKLVTHLEGSQSLYAQDLRGD-VAFVFGNEGAGVSAGLLQLADCR 230 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + L+ Sbjct: 231 VRIPMPGHAESLNVAMAATICLF 253 >gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046] gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197] gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739] gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5] gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94] gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11] gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1] gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952] gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606] gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9] gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B] gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354] gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088] gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50] gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736] gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739] gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5] gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94] gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli] gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1] gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1] gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088] gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354] gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1] gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 85-1] gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B] gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120] gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007] gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 117-3] gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402 065] Length = 259 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ +Q ++ + G AL N+ K+F + N L L N+ + Sbjct: 17 REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K +G QG+ LD ++N ++V D V DP N+G I+R+A Sbjct: 77 VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+ITTK + +S G++ +IP I NL + ++ + GF+ + S D Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + I + +G EG G+ + + MPG ++LNV+ A ++ + Sbjct: 193 TNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251 >gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073] gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 153-1] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 267 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I +A++++G+L HIP R N+ D L + Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQ 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++D + L + + A + G E GL + QE A + + G + Sbjct: 187 LRKSGMQILATAADGEVDLAEADLSQPTAWLFGNEAHGL-GELQEEADMRVRIPILGRAE 245 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 246 SLNLATAASICLY 258 >gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli LF82] gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus NRRL 1] gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus NRRL 1] Length = 495 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 143/353 (40%), Gaps = 89/353 (25%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRN-HRDYKKMQSFNQKSRHT------SQPENLFLYGVHT 56 + K E +K + KL+R HR + M F + + P + FLYG Sbjct: 130 VEASKEEDPPKMKRAGRMKLKRGVHRFTETMPEFLKHHIKVPDFISHATPASQFLYGTSA 189 Query: 57 VSAALNNPSRKIFQLLA--------------------TKN---ALARLDWD-------AN 86 V AAL R++++L +KN +A WD + Sbjct: 190 VEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRKLALSKNIKVKMAYAGWDRLFDQMSSG 249 Query: 87 LPH--------PFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPTLDAV----- 129 PH P PV +P +++ + V + V L++ T D + Sbjct: 250 RPHNGCILDASPLPV--LPIKSLCAVPSLDVNEFRVTLAAQSREEALVNSTNDRIEIRHP 307 Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 R ++++LD + D N+G I+RSA D I+ R S V K+++GA E+ Sbjct: 308 PNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPVTIKASAGAAEN 367 Query: 187 IPYIRISNLTDALQKMHSWGFQ-------TIGLS-------SDSKKPLEQEIKNDKIALI 232 +P ++++N D +Q+ + G+Q +G + + ++ PL Q L+ Sbjct: 368 MPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMTRNPLTQAPS----VLM 423 Query: 233 LGAEGKGLRPKTQETATSMAHL------------HMPGIIKALNVSNAAAVAL 273 LG+EG GL P + A S+ + P + +LNVS AAA+ + Sbjct: 424 LGSEGFGLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVAAAILM 476 >gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185] gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFDVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLSEWWRQN 343 >gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 242 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 1/142 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD + D N G+I+R++ D II + S + ++ K++SG + IP + Sbjct: 91 LLIILDSITDVRNFGSIVRTSACTGVDAIIIATKNSVTINSDSIKTSSGGIFKIPICKEK 150 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + S+G Q I ++ + + + A ILG+E KG+ K + Sbjct: 151 NIIKIIRYLKSFGIQVIAVTEKTDNICYKFNYKNPTAFILGSEQKGISKKYLSLCNNTVK 210 Query: 254 L-HMPGIIKALNVSNAAAVALY 274 L + + +LNVS A LY Sbjct: 211 LPLIKNSLTSLNVSVACGAILY 232 >gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 259 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 2/149 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190 + L +VL+ V DP N+G ++R+A A +G+ +++ P+ VL SA GA +P Sbjct: 108 TSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASA-GAWFEVPIA 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 S+L L G Q + +D+ + A++LG EG GL P A Sbjct: 167 VHSDLITQLSNSQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADY 226 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LNV+ AA+ LY Q Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQ 255 >gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] Length = 246 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 19/182 (10%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 T PQ I ++ KE V L R + L L+ V DP N+G ++R+A Sbjct: 79 TQTPQGIVAVIQKEEVG--------------LPDFRQGKYLF-LEDVQDPGNVGTMIRTA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLS 213 A G+I + + + S +S G+ H+P R+ T ++ K + F LS Sbjct: 124 DAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATFVVEAKKSNLPFLATTLS 183 Query: 214 SDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 DSK E ++N L++G EG+G+ E+A + H+ M G ++LNV+ AA + Sbjct: 184 RDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGIL 241 Query: 273 LY 274 ++ Sbjct: 242 MF 243 >gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] Length = 265 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 121/257 (47%), Gaps = 20/257 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW + Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVDD 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ S A+ + + L+ LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVFAVCEKHESEV--ALADGKFLL-LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMP--GIIKALN 264 G + ++ P + ALI+G EG G+ +QE A + +L++P G ++LN Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGV---SQEILAKTDQNLYIPIYGGAESLN 246 Query: 265 VSNAAAVALYITQNHFA 281 V+ AA + Y Q+ A Sbjct: 247 VAVAAGILTYYLQSPVA 263 >gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 274 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 124 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 182 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 183 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 242 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 ++ G +++LNVS A V L Sbjct: 243 CVKINGTGNVESLNVSVATGVLL 265 >gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli CFT073] Length = 370 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 281 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 341 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368 >gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli UMNK88] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a] gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39] gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026] gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412] gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302] gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39] gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a] gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026] gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042] gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412] gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302] gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150] Length = 246 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ ++ + + +S G+ H+P RI + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISRLSADIYNLKTLRSMQGSHFHLPVYRI-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + K + AL++G EG+G+ P+ A + H Sbjct: 164 ADFIRLAQSSSLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|194695936|gb|ACF82052.1| unknown [Zea mays] Length = 209 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 47 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 106 Query: 195 ------LTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241 +T KM + ++ SSD+ K L + N+ + L+LG+EG GL Sbjct: 107 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 163 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +T + A + ++ M G ++LNVS A + L++ Q Sbjct: 164 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 198 >gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] Length = 243 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186 V++ Q+L L+++NDP N+G I+RSA AF + I+ + ++ +SA G+L + Sbjct: 93 VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 151 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243 I Y I + L+K S GF+ L +S+ L EIKN +K LI+G E G+ + Sbjct: 152 ISYENI----NVLEKYKSNGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 205 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A + M + ++LN S AA+++++ Sbjct: 206 IKKYADEFLIIPMDNLTESLNASIAASLSMF 236 >gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1] Length = 281 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 12/244 (4%) Query: 42 HTSQPE-NLFL-YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPP 98 H +PE +F+ + AL+ I L+ TKN + + A H PV T Sbjct: 35 HLYEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGH-IPVYTAQF 93 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + ++ G + L + ++ ++VL++V +P N+GAI RSA A Sbjct: 94 DVLTRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALG 153 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQT--IG 211 D ++ T S + + G + IP+ ++ + + + GF+T + Sbjct: 154 MDAVLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMA 213 Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 LS DS E + + +K+A+I+G EG+GL +T + + + M + +LNV+ A+A Sbjct: 214 LSDDSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASA 273 Query: 271 VALY 274 VA + Sbjct: 274 VAFW 277 >gi|255635868|gb|ACU18281.1| unknown [Glycine max] Length = 324 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193 ++VLD + DP N+G +LRSAVAF DG+ + +++ GA +P + S Sbjct: 170 ILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQLPVVSGSW 229 Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-----KPLE-------QEIKNDKIALILGAEGKGLR 241 N ++L+K FQ L+ + KP+ + + + L+LG+EG GL Sbjct: 230 NHLESLKKE----FQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPLCLVLGSEGSGLS 285 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ +T + + M G ++LNVS A + LY+ Q Sbjct: 286 EKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320 >gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 349 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 199 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 257 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 258 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 317 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 318 CVKINGTGNVESLNVSVATGVLLAEWWRQN 347 >gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] Length = 361 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+GAI+RS F G++ + ES ++A G E + I Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAERVEPITGD 272 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + G+ + SS + PL + K+ L+LG E GL ++ Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 333 INGTGNVESLNVSVATGVLLAEWWRQN 359 >gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays] gi|194693648|gb|ACF80908.1| unknown [Zea mays] Length = 365 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 262 Query: 195 ------LTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241 +T KM + ++ SSD+ K L + N+ + L+LG+EG GL Sbjct: 263 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 319 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +T + A + ++ M G ++LNVS A + L++ Q Sbjct: 320 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 354 >gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107] Length = 259 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N+ L+ LD + +P N+G I+RSA A + DGI+ + + ++ K+++G L P Sbjct: 111 KNNYRLLALDGITNPQNLGMIIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPI 170 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R NL DAL+ G LSS + L +LG E G+ + T Sbjct: 171 LRCQNLVDALKDFSRHGASLCALSSHAHHNLSGFRPEGASIYVLGNETHGVSDPVFQLCT 230 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ AA+ + Sbjct: 231 EKIKIPMNNGVESLNVAVTAALIAF 255 >gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] Length = 349 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347 >gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 266 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I +A++++G+L HIP R N+ D L K Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGK 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S G Q + ++D + L + + A + G E GL E A + + G + Sbjct: 187 LRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLDE-ADMRVRIPILGRAE 245 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 246 SLNLATAASICLY 258 >gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 16-3] gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAERDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980] gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980 UF-70] Length = 600 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 81/304 (26%) Query: 46 PENLFLYGVHTVSAALNN---PSRKIFQLLATKN----------ALARL----------- 81 P + FLYG V AALN SRK+++L K AL RL Sbjct: 266 PASEFLYGTSVVEAALNTQRRKSRKLYKLYIHKGEDRHNGDRDGALTRLAQRKGVEVAIV 325 Query: 82 ---DWDANL-------PH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAP----- 120 DW L PH P+ +P ++ ++ + + A++ AP Sbjct: 326 RGQDWLRTLDKMSQGRPHNGYILEASPLPRLPVISLGSVIDQ---NDSFAIQLAPDHQSR 382 Query: 121 ----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 +++ D+ L+++LD + DP N+GAILR+A+ + + R S Sbjct: 383 EELEVNGNDTIINVPKDSTGRKPLVLLLDSIEDPQNLGAILRTALFMGVTAVAISVRNSA 442 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKP--------- 219 S + V+ K+++GA E I ++ ++ + G++ + +KP Sbjct: 443 SFTPVVFKASAGAAETIEIFSVNKPGGFIKDSQASGWKIYAAVAPPAPRKPDSRHMWPAA 502 Query: 220 ---------LEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSN 267 L+ ++ D L++G EG+GLR ++ A S+ M G + +LNVS Sbjct: 503 SQEFVWSHKLQDPLREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKLDSLNVSV 562 Query: 268 AAAV 271 A + Sbjct: 563 ATGM 566 >gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132] gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans ND132] Length = 196 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 7/154 (4%) Query: 126 LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSAS 181 +DAV R L +V+D++ DPHN+ A+LRS AF G+ Y+ S+ LA KS+ Sbjct: 13 IDAVLARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLY--YTDSQWPDLALKSSG 70 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240 A + + + + + ++ G + + SDS +P+ A+IL E +G Sbjct: 71 SATKWVERTEHVDAAEMVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIILSNEHRGT 130 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P ++ M G++++ NVS AAA+ LY Sbjct: 131 SPDLAALVPDEIYIPMQGMVQSFNVSVAAAIILY 164 >gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae CGSP14] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 88 PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R+++ L D +K+ T LS D Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 191 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ A + ++ Sbjct: 192 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 249 >gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group] Length = 329 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + N Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 227 Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243 +D M + + +S K L + ++ + L+LG+EG GL + Sbjct: 228 WSDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAE 287 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + A + ++ M G ++LNVS A + L++ Q Sbjct: 288 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 321 >gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL +VL+ + DP N+G I+R+AVA GI + ++ + +S++G P + Sbjct: 111 QLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVE 170 Query: 193 SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S+L+ ++K + G + I L + +K E + + ++LG EG GL P+ A Sbjct: 171 SDLSALVKKYQAQGVKAIATLPTATKSHWEIDFTRPTL-ILLGNEGAGLSPQLAALADET 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + G +++LNV+ A AV LY Sbjct: 230 VKIPLFGGVESLNVAIATAVILY 252 >gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 297 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ ++VL++V +P N+GAI RSA A D ++ T S + + G + IP+ Sbjct: 142 GARRIVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWT 201 Query: 191 -----RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242 ++ + + + GF+T + LS DS E + + +K+A+I+G EG+GL Sbjct: 202 FFDGKKVKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCA 261 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + + + M + +LNV+ A+AVA + Sbjct: 262 QTIRESDYVVRIPMSHGVDSLNVAAASAVAFW 293 >gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 246 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 3/146 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ L+++LD + DP N+G I+R+A A D ++ + + ++ G++ HIP Sbjct: 99 EDNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIP- 157 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I + L + + + GF + + D+ + E + N K+ LILG EG G+ P A Sbjct: 158 IYTATLEQEIHMLQTQGFTILATALHDAVEYTEVSVHN-KVGLILGNEGAGIAPSLLNKA 216 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV AA + +Y Sbjct: 217 NQRINIPIYGKAESLNVGIAAGILMY 242 >gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1] gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1] Length = 265 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +K+ G+E + L APL +P L + +++VL + P N+GAILR+A A Sbjct: 85 FEKVSGRE--NPDGVLGVAPLPAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAA 142 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ R + + +++ GA+ +P + AL + F+T+ + D+ Sbjct: 143 GVLVLGRGADPYGPNVIRASQGAVFSVPTAVLGE-DAALGWLAEHNFRTVACTPDAPADY 201 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL+LG E GL P A + M G +LNV+ AAA+ LY Sbjct: 202 WDTPLTGRVALLLGTEHAGL-PAEWRAAHQAVRVPMHGQADSLNVATAAALVLY 254 >gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20] Length = 286 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV P + ++ I G +H+G AL P L + ++ + +L+ + D Sbjct: 86 PVFVAPEEVLESITGFH-LHRGALAAMNRPALAGVPELLSSARGGAGARRVAILEDLVDH 144 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA RSA A D ++ T R + + + G + +P+ RI A+ ++H+ Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AMDELHA 203 Query: 205 WGFQTIGLS-SDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHM 256 GF L+ SD+ L++ + ++A++LG EG GL +T A + + M Sbjct: 204 QGFTVAALALSDTSVALDEFAASAACTGVDSRVAVVLGTEGDGLSHRTITAADEVVRIPM 263 Query: 257 PGIIKALN 264 G + +LN Sbjct: 264 AGGVDSLN 271 >gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 17/194 (8%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + V P + KI G +H G + APL + L++LD + + HN Sbjct: 53 RCVEPAELAKIAGT--LHHGGVVAVVDEPALRAPLPREVRAWAKAGTPLLLLDRIGNAHN 110 Query: 147 IGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 +GAI R+A F II P ESA + A G LEH+ R+ L ++H Sbjct: 111 VGAIARTAAFFGVAHIIIPAHAFAALPGESA--HRIAEGGLEHLTLWRVPTLARFCAELH 168 Query: 204 SWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G++ +G ++ P AL+LG E GL + + T + + G I Sbjct: 169 EAGYEVVGAATRGGALTLPALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKI 228 Query: 261 KALNVSNAAAVALY 274 ++LNVS AAA+ ++ Sbjct: 229 ESLNVSAAAAILMF 242 >gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] Length = 257 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD++ DP N+G I+R+A + + + +S G++ +P++ + + Sbjct: 111 FIVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDD 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L K T K ++E A+++G EG GLR + E A + Sbjct: 171 LLALLDKFQKKKVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQI 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + AA++ ++ Sbjct: 231 PMQGKVESLNAAIAASILMF 250 >gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] Length = 284 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + G + L P+L + ++ + VL+ + D N+GAI Sbjct: 87 IPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGAI 146 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSW 205 RSA A D ++ T + + G + IP+ RI + L ++++ Sbjct: 147 FRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNAL 206 Query: 206 GFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T ++ SD+ ++ + DK+A++LG EG GL T + M + + Sbjct: 207 GFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVDS 266 Query: 263 LNVSNAAAVALY 274 LNV+ A+AVA + Sbjct: 267 LNVAAASAVAFW 278 >gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 305 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 154 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + AL ++ GF D + + ++ ++GAE +G+ Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 273 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 274 IRGSGKVESLNVASATAV 291 >gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 291 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 VL+ V +P N+GAI RSA A DG++ T S + + G + +P+ + Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200 Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + GF+T + + D P +E D++A+ILG+EG GL P+T + Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPALKEA--DRLAVILGSEGPGLLPQTIAES 258 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+A+A + Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284 >gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 223 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ V +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 73 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 131 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 132 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 191 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 192 CVKINGTGNVESLNVSVATGVLLAEWWRQN 221 >gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund] gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund] Length = 261 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 13/248 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +K ++ Q E + G V AL + KI +L ++A + + N+ + T Sbjct: 19 RKKKYRVQEEKFLVEGFRFVEEALK-STFKISHVLVGESAKEKCN-SFNIFNIVSENTKI 76 Query: 98 PQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 D+I+ KE QG+ A + + ++ S ++ D V DP N+G I+RS Sbjct: 77 SLVKDEIL-KELCETNNPQGI---IAIVDNKIINIEDKSGFYVLADKVQDPGNMGTIIRS 132 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I TK + +S G++ IP I N + + + S GF+ I S Sbjct: 133 ANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIPIIE-DNEFEIINVLKSKGFKLIVSS 191 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D++ K+ + +G EG G+ + + MPG ++LN AA++ + Sbjct: 192 LDTENNFFDIDLTGKVIICVGNEGNGVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMM 251 Query: 274 Y--ITQNH 279 Y + QNH Sbjct: 252 YEVVRQNH 259 >gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 274 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ ++VL++V +P N+GAI RSA A D ++ T S + + G + IP+ Sbjct: 119 GARRIVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWT 178 Query: 191 -----RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242 ++ + + + GF+T + LS DS E + + +K+A+I+G EG+GL Sbjct: 179 FFDGKKVKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCA 238 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + + + M + +LNV+ A+AVA + Sbjct: 239 QTIRESDYVVRIPMSHGVDSLNVAAASAVAFW 270 >gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6] gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6] Length = 246 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 23/181 (12%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q +D + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ-------------VDLSQGK--FLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I +++ + S +S G+ H+P R+S + AL K + ++ SK Sbjct: 127 GFTGVIVSEKSADIYSLKTLRSMQGSHFHLPIYRMS--SQALLKETKEAAIPVLATTLSK 184 Query: 218 KPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + + Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILI 242 Query: 274 Y 274 + Sbjct: 243 F 243 >gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146] gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 357 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 7/155 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 DAV ++ L++V +PHN+G I+R+ F GII + + ES ++A G EH Sbjct: 205 DAV---DCVLALENVANPHNLGGIMRTCAHFGIRGIIAPE-SAALESGAAVRTAEGGAEH 260 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + I + + L G+ + SS L + + KI L++G EG GL T Sbjct: 261 VQAIDAEDFSATLDTFRRAGYTIVTTSSHKGTTQLHRAVLPAKIVLVVGHEGDGLSDGTL 320 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + + G +++LNVS A + L + QN Sbjct: 321 QQGDLSISIGGTGSVESLNVSVATGIMLAEWWRQN 355 >gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401] gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 345 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRMK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] Length = 246 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 62/295 (21%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I +++KI + H N +D KKMQ F + G H V A Sbjct: 1 MEIIESIQNQKIKQIAKLH------NRKDRKKMQQF-------------IIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +N S +++ T N P + + +V + + A Sbjct: 42 VN--SNIDIEMILTVN--------------------PDRLTEAMVAGSKQQYEITFKVAE 79 Query: 121 LLSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 LS T + AV N + ++ LD + DP N+G I+R+A A D +I K Sbjct: 80 KLSQTEAPQGIYAVCNMKDGKDAELNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKG 139 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +++ G++ HIP I + + + K + + G S + + ++ I +D Sbjct: 140 TVDIYNDKVLRASQGSVFHIPVIEM-DFDEVSSKFNGTIY---GTSLEEARDYKEVIPSD 195 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++LG EG+G+ P+ ++ + G ++LNV+ A + +Y HF K Sbjct: 196 NFMIVLGNEGQGVNPEILSATDENLYIPIYGRAESLNVAVCAGILMY----HFVK 246 >gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449] gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 229 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYS 169 HQG+ P +L+ +++ L+VL +V D NIG+I R+A A G +I S Sbjct: 61 HQGILASIIPPSPLSLNDLKSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVICLSNLS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 +A+ +SGA H+PY ++ D + ++ + F IG +D + +K K Sbjct: 121 QKAIESIARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIG--ADMQGQESCNVKK-KW 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL + + ++ + M +LNV+ A + + Sbjct: 178 ALFLGSESEGLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221 >gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 266 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 LM+L+ + DP N+G ILR+ G++ T Y+P + +S G++ +P++ Sbjct: 119 LMILETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPK----VIRSTMGSIYRVPFV 174 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + AL ++ + G + K E E ++G E GL +T A Sbjct: 175 YVEDWQQALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + AA++ ++ T Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFET 260 >gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437] Length = 263 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 10/181 (5%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 P T ++V + QG+A E + +R + +++LD + DP N+G ILR+A A Sbjct: 79 PSTFAQLVDTQT-PQGIAAEVVVPENKEGYRIRGEEPVLLLDAIRDPGNLGTILRTAEAA 137 Query: 158 SCD----GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 G T ++P + +SA G+L IR +L +A+ ++ G+ +G S Sbjct: 138 GVGDVWLGAGTVDPFNPK----VVRSAMGSLFRT-RIRRVDLREAIPELKKQGYWVVGTS 192 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ + A++LG EGKG+ + + MPG +++LNVS A + L Sbjct: 193 PRAERAHFDCHYPKQTAILLGNEGKGISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILL 252 Query: 274 Y 274 + Sbjct: 253 F 253 >gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 291 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 VL+ V +P N+GAI RSA A DG++ T S + + G + +P+ + Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDRKL 200 Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + GF+T + + D P +E D++A+ILG+EG GL P+T + Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPALKEA--DRLAVILGSEGPGLLPQTIAES 258 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+A+A + Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284 >gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 17/253 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDAN 86 ++Y+K+Q+ S+ + E + G H V A+ + + I +L+ +++ + + W + Sbjct: 13 KNYQKLQT----SKGRKKSEAYMIEGEHLVEEAIQS-NISIQRLVVSEDTIQFYEKWTKS 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P F K V + + +QG+ L PL L V + L+ D V DP N Sbjct: 68 YPTMFVSKEVFEK-----LSMTQTNQGI-LAIVPLEKKPLVEVPQGRYLLA-DAVQDPGN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HS 204 +G I+R+A A D ++ + + + +S G+ H+ I NL D K+ + Sbjct: 121 LGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVA-IYHENLMDVYGKLKEND 179 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L D+K + D +A+++G EG G+R + E+A + + M G ++LN Sbjct: 180 IPIAVTALHRDAKD-FKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESLN 238 Query: 265 VSNAAAVALYITQ 277 V+ A V +Y T+ Sbjct: 239 VAIATGVLMYQTR 251 >gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] Length = 264 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 L++V+D V DP N+G I+RSA A G++ T Y+P ++ G+L H+P Sbjct: 117 LVVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKT----IRATMGSLFHLPV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ ++ AL + S G I +P+ + +A+++G EG G R Sbjct: 173 VKAEDVDGALAYLASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKH 232 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ MPG ++LNV+ A ++ LY Sbjct: 233 VKVNIPMPGRAESLNVAMATSIMLY 257 >gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 281 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 11/196 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146 P+ V + + ++ G + +H+GL + PT+ V +++++ VL+ V D N Sbjct: 86 PIYEVSREVLAEVAGFD-MHRGLVAAADRVGEPTVGEVLDGLDEDNRVIGVLEGVGDHEN 144 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKM 202 IGA+ R+A ++ + + + + G + +P+ + + L + Sbjct: 145 IGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSMGHVLRVPFAHVPGKPTTWQRGLADL 204 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G++ + ++ ++ L ++ DK+A+++GAEG GL A A + M Sbjct: 205 QERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAEGPGLTEHAMRAADVRAKIPMSPGTD 264 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ +AAV Y Q Sbjct: 265 SLNVATSAAVGFYAAQ 280 >gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC 13950] Length = 281 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + ++ + VL+ VND N+G+I R+A D ++ + + + G Sbjct: 117 EVIAGARTVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALL 176 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI---KNDKIALILGAEGKGLRP 242 +PY R + L + GF+ + ++ +S PL + + + +++A+++GAEG GL P Sbjct: 177 VPYARATCWPAELMTLKENGFRLLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTP 236 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + M +LNV+ AAA+A Y Sbjct: 237 ATLRCSDVRVRVPMSRGTDSLNVATAAALAFY 268 >gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group] gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group] Length = 329 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + N Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 227 Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243 +D M + + +S K L + ++ + L+LG+EG GL Sbjct: 228 WSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAD 287 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + A + ++ M G ++LNVS A + L++ Q Sbjct: 288 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 321 >gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 248 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D++ + + L+++D V DP N+G ++R+A A D ++ + + +SA G+ H Sbjct: 98 DSLTSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFH 157 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP ++ NL ++++ + G + G S + ++ ALI+G EG G+ E Sbjct: 158 IPIVK-RNLHVFIEELKASGVKVYGTSLQNGSAFQETAPIGSFALIVGNEGAGVDSAILE 216 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AAAV LY Sbjct: 217 KTDLNLYVPLYGQAESLNVAIAAAVLLY 244 >gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 245 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 ++L+ V DP N+G I+R+A A DG+ +++ + ++ +S G+ H+P R I Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDIY 163 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + +Q+ ++ T +S D K QE AL++G EG+G+ + A + Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTILADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 12/200 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDK---- 103 + L G +V AA+ RK+ +L K+ + D D N + H K +P +++ Sbjct: 1 MLLEGNVSVKAAILGNHRKVEKLYYDKH---KNDKDLNFILHRAMEKEIPCMPLEREEIN 57 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + H GL E +P + L + + L++L+ V DP N+G I+R+ + CDG Sbjct: 58 AMAAGRTHGGLVAEASPRIYQELSECMHGKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDG 117 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPL 220 +I + S + +AKS++GA E++ + +L ++ + G +T + D+ L Sbjct: 118 LILPRHDWASAESTIAKSSAGAFEYMNIVMSDDLPKLVKDIKKQGIKTYAAMRKDAITYL 177 Query: 221 EQEIKNDKIALILGAEGKGL 240 E + + + L +G E +GL Sbjct: 178 EADYRQPCL-LAIGGEMRGL 196 >gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group] gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa Japonica Group] gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group] gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group] Length = 340 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + N Sbjct: 180 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 238 Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243 +D M + + +S K L + ++ + L+LG+EG GL Sbjct: 239 WSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAD 298 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + A + ++ M G ++LNVS A + L++ Q Sbjct: 299 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 332 >gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933] gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 345 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENEXNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ V +PHN+G I+RS F G++ + + ES ++A G EH+ I Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + + G+ + SS L + K ++LG EG GL + Sbjct: 295 DFLSVLTEFRNAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LN+S A + L + QN Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382 >gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] Length = 252 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + L+ V DP N+G I+R+A A G+I + + + S +S G+ H+P R+S+ Sbjct: 110 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSS 169 Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251 L+K G + LS DS E I+N L++G EG+G+ E+A + Sbjct: 170 QA-LLEKAKKAGISVLATTLSKDSVDYRELPPIEN--FVLVMGNEGQGISSLMAESADQL 226 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 227 VHISMKGQAESLNVAVAAGILIF 249 >gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 267 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 82/151 (54%), Gaps = 6/151 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++++ +++++ V D NIGAI RSA A D ++ T + + + G++ Sbjct: 114 EVCQDARRIVIINGVVDTTNIGAIFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPK 243 +P+ I N +L + GF+T+ ++ +++ P++ I + K+A+I+G EG GL + Sbjct: 174 VPWTWIDN---SLSDLCGLGFRTVAMALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYE 230 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M + +LNV+ A+A+A + Sbjct: 231 AITEADYVVRIPMSHGVDSLNVAAASAIAFW 261 >gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 246 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 24/215 (11%) Query: 66 RKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 KIF L + ++ LA W + T PQ I ++ KE V Sbjct: 47 EKIFALESYRDQLAAFPQTVWVSEEVLLDLADTQTPQGIVAVIQKEEV------------ 94 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L R + L L+ V DP N+G ++R+A A G+I + + + S +S G Sbjct: 95 --GLPDFRQGKFLF-LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQG 151 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLE-QEIKNDKIALILGAEGKG 239 + H+P R+S L +++ + LS DSK E I+N AL++G EG+G Sbjct: 152 SHFHLPIYRMS-LASFVEEAKKSNLPILATTLSKDSKDYHELSPIEN--FALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] Length = 170 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + ++ DH++ P N GA+ R AF + II +S+ L ++A + IPY +S Sbjct: 19 ITVICDHLDSPANQGALFRVCEAFGVNNIIFFGNTIDIKSSRLKRTARSTEKLIPYSCVS 78 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 ++ + + + + IGL S QE+ D IALI+G+E G+ + S Sbjct: 79 DIKETIATLKQNNTRLIGLEITSDSAAIQELTIDTQTSIALIIGSEKHGISEDILQYLDS 138 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + H+ M G ++NV + +ALY Sbjct: 139 VYHITMFGNNSSMNVIQSTGIALY 162 >gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873] gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873] Length = 260 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++D + DP N+G I+RSA A G+ITTK + +S G++ IP I + Sbjct: 113 FYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIIEDN 172 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N L+ + S GF+ + S D++ K + +G EG G+ E Sbjct: 173 NFQ-ILKILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVK 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LN AA++ +Y Sbjct: 232 IPMPGDAESLNAGVAASIMMY 252 >gi|126632662|emb|CAM56560.1| novel protein similar to vertebrate mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) (MRM1) [Danio rerio] Length = 206 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 28/211 (13%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 ++GV AL R L ++A+ R+ +A + +K V QT++K Sbjct: 1 IVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRGVQIKRVNKQTLEK 59 Query: 104 IV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + GK VHQGL L E P+ S L+ L +VLD V DP N+GAILRS Sbjct: 60 MCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDGVQDPMNLGAILRS 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TI 210 A D I+++ S + ++K+++G +E + SNL ++ G+Q T+ Sbjct: 116 AYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTV 175 Query: 211 GLSSDSKKPLEQEIKNDKIA----LILGAEG 237 GL S + + K++ L++G EG Sbjct: 176 GLEEGSSQSNVLSCSDFKMSRPTLLLMGGEG 206 >gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 259 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 72/141 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LMVL+++ DP N+G ILR+ G++ ++ + + + +S G++ +P++ Sbjct: 111 FLMVLENIQDPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTE 170 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L +L+ + + G + + + E+E ++G E GL +T A + Sbjct: 171 DLPASLKALKAGGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVK 230 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + AA+V ++ Sbjct: 231 IPMKGKVESLNAAVAASVLMF 251 >gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] Length = 288 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 23/159 (14%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIP-- 188 + +L++V +P N+GAI RSA A + + ++ SP S L + AS G + IP Sbjct: 127 IAILENVQNPTNVGAIFRSAAALNMEAVL----LSPGCSDPLYRRASRVSMGTVFQIPWT 182 Query: 189 YIRISNLT----------DALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGA 235 +IR SN A+ ++ G++T + L+ DS + E+ K +K+A+ILG Sbjct: 183 FIRDSNEMRCKREVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGN 242 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG+GL +T + M + +LNV+ A+AVA + Sbjct: 243 EGEGLENETIALCDYTVKIPMTHGVDSLNVAAASAVAFW 281 >gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 197 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+++++DPHN+ AILRS AF+ + P V KS++ A + + Sbjct: 21 RQRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLLYVGQPF-PEVGRKSSASARKWVRR 79 Query: 190 IRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR + + +Q++ G I G S E + A+ILG E G++ ++ Sbjct: 80 IRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPEWDFTR-PTAVILGNEHSGVQEDLEQM 138 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 ++ M G++++LNVS AAAV LY Q H A Sbjct: 139 VAQEIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQA 174 >gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] Length = 258 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++L+ V DP N+G++LRSA A CD + + + + S + ++A G H Sbjct: 107 IVTARFALLLEAVQDPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMGG--HF- 163 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I D + + + + + + L IA ++G EG GL P+ + A Sbjct: 164 CLAIYEQQDLFKVAQGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALA 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T + MPG +++LN + A A+ L+ Sbjct: 224 THPVTIPMPGAVESLNAAAATAICLF 249 >gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 285 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I +A++++G+L HIP R N+ D L K Sbjct: 146 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGK 205 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S G Q + ++D + L + + A + G E GL E A + + G + Sbjct: 206 LRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLDE-ADMRVRIPILGRAE 264 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 265 SLNLATAASICLY 277 >gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 27/261 (10%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNA--LA 79 R++ YK + + +R + L G H + A L+N + LL A ++A +A Sbjct: 10 RDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQDAEIVA 69 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ 133 LD ++P Q D + + + L+T L +D V +SQ Sbjct: 70 LLDACVDVPQT--------QFEDALFAQLS-----ELKTPNGLLALIDIPAAQVEVAHSQ 116 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++L+ + DP N+G+ILRSA A CD + + + + S + ++ G H + I Sbjct: 117 FALLLEDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGG--HFA-LSIL 173 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D L+ + + + S ++K L K+A +G EG GL P+ A Sbjct: 174 ESADLLKVATGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFI 233 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I++LN + A AV L+ Sbjct: 234 IPMQGKIESLNAAAATAVCLF 254 >gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] Length = 234 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186 A R +VL+++ PHN A+LR+ F + I K + + + AS L Sbjct: 34 AQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLTL 93 Query: 187 IPYIRISN----LTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLR 241 Y + + + + S GF+ G S D + +P++ N+KIAL+ G E +G+ Sbjct: 94 HKYFQPEEPENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFGNEHEGIS 153 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + A + H+ M G ++ N+S AA++ L Sbjct: 154 NEVKNAADGLVHIPMRGFTESFNISVAASLFL 185 >gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940] gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940] Length = 270 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 14/197 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 P+ V +T+ ++ G + +H+GL PTL+ + R ++ ++VL+ V D NIGAI Sbjct: 71 PMYEVTRETLAQVAGFD-MHRGLVAAADRAAEPTLEEILRTAKTVVVLEGVGDHENIGAI 129 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQKMH 203 R+A D ++ S + + +S ++ H+ + ++L LQ + Sbjct: 130 FRNAAGMDVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLDGGYTTWQRSLQVLR 186 Query: 204 SWGFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 F+ + L+ + L Q + +K+AL++GAEG GL + A + M Sbjct: 187 DANFRLVSLTPHPEAVHLAQALHGAEKVALLVGAEGPGLTEHAMKATDVRARIPMAPGTD 246 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ +AA+A Y Q Sbjct: 247 SLNVATSAAIAFYERQR 263 >gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 259 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 LLM+LD + DP N+G ILR+ G+I T Y+P + +S G++ +P+ Sbjct: 111 LLMILDTIQDPGNLGTILRAGEGAGITGVIMNDTTADIYNPK----VIRSTMGSVCRVPF 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + L L + G + + + E+E ++G E GL +T A Sbjct: 167 VYTAALPQTLANIKKRGVRLYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMAD 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN + AA+V ++ Sbjct: 227 AYVKIPMMGKVESLNAAVAASVLMF 251 >gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] Length = 268 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 34/264 (12%) Query: 32 KMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K+++ N+ +++ S + E +F+ V + P ++ Q+ ++ A R + LP Sbjct: 11 KIKNINKLNKNASFRKEEQVFI--VEGIRMFRELPVDRVKQVFVSETAYQR--YGTELPE 66 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---------------LSPTLDAVRNSQL 134 K + Q +V ++V + ++ P L +D N Sbjct: 67 ----KGITEQDRRLVVVSDSVFRSMSQTKTPQGLLAVVERYHYTMEDLISVMDKRENGNT 122 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 +VL+ + DP N+G I+R+A A GII + Y+P + +S G + +P++ Sbjct: 123 FLVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPK----VVRSTMGTIFRVPFV 178 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + A+ ++ G G D ++K + A ++G EG GL + A Sbjct: 179 YVDDPAKAVDRLKEHGIVVYGAHLDGCDLYAGKLKRNN-AFLIGNEGNGLTDELSSKADR 237 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN + +A + Y Sbjct: 238 LLRIPMAGQVESLNAAISATLLAY 261 >gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 279 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ +LL V + +P N G ++R A A DG++ + ++++G+L H+P Sbjct: 120 RDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPV 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQET 247 +R + L +H+ G + ++D + L++ EI +A + G E GL P Sbjct: 180 VRGREVVPTLDALHAAGLTLLATAADGEVVLDEADEILAGPVAWLFGNEAHGLDPAVAAR 239 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LN++ AAA+ LY Sbjct: 240 ADHRVRIPIHGRAESLNLAAAAAICLY 266 >gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM] gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 176 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + L++VLD++ HN+GA+ R+A AF + I+ + K+A GA Sbjct: 17 TFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGAT 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIK-NDKIALILGAEGKGLR 241 E + ++ ++++A++++ + G+ IG+ ++DS + EI N K AL+LG E +GL Sbjct: 77 ESVDWVYQKDISEAIKELKTQGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNEVEGLS 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LNVS + ++ Sbjct: 137 DEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIW 169 >gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40] Length = 351 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 130/324 (40%), Gaps = 95/324 (29%) Query: 37 NQKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL-- 81 Q R+T+ P+ F+YG V AAL R +++L + K AL +L Sbjct: 17 EQNQRNTTVPQREYQKFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLAL 76 Query: 82 -----------DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEA 109 WD A PH P P +K+VP + Sbjct: 77 SKNVKVKMAFGGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----G 132 Query: 110 VHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 V G L++ T D ++ ++++LD + DP N+GAI+RSA D Sbjct: 133 VELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDA 192 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKP 219 II R S S V K+++GA E++ + +SN D +Q K + W F ++D+ P Sbjct: 193 IIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGP 248 Query: 220 LEQEIKNDKI------------------ALILGAEGKGLRPKTQETATSM-----AHLHM 256 + + I +++G+EG GL + A S+ A L Sbjct: 249 ASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLAT 308 Query: 257 P-GI------IKALNVSNAAAVAL 273 P G+ + +LNVS AAA+ + Sbjct: 309 PLGVESDPSRVDSLNVSVAAALLM 332 >gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 227 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 277 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 8/191 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + K+ G L P L + ++ + VL++V +P N+GAI Sbjct: 80 PVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGAIF 139 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWG 206 RSA A D ++ T S + + G + IP+ ++ + ++ + S Sbjct: 140 RSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKSLC 199 Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T ++ +DS P+ + +K+A+ILG+EG GL T + M + +L Sbjct: 200 FGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVDSL 259 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 260 NVAAASAVAFW 270 >gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212] gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212] Length = 105 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 7/106 (6%) Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSKKPLEQEIKNDK 228 +++ K A GA E +P IR++NL+ L+ + W +G + ++ + + Q Sbjct: 1 TSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEATETIYQSKLTGP 57 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 58 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 103 >gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2] gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 280 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 7/155 (4%) Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P+++ V R ++ ++V++ V D NIG I RSA A D I+ T+ + + + G Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239 ++ IP+ + L+K+ GF+T+ ++ K ++ I K+A+++G EG G Sbjct: 170 SVFLIPWTWLDGSPYELRKL---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ +T A + + M + +LNV+ A+A+A + Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261 >gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. doylei 269.97] Length = 227 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RASSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08] Length = 271 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +L ++ V DP N G ++R A AF D +I T+ + +S+ G++ H+P I Sbjct: 117 DVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVI 176 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQ 245 L DA++ H L++D L+ ++ + IA ++G E GL + Sbjct: 177 VGVELADAVEWAHQREMSV--LAADGGGHSLDAVARSGRLKRPIAWLMGNEAWGLPEADR 234 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + + M G +++LN+S AAAV LY T Sbjct: 235 ALADEVVGVPMWGAVESLNLSTAAAVVLYAT 265 >gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+G I+R+AVA GI K + +S AL +IP Sbjct: 118 LYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDV 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L++ + +T S ++ KP + +ILG EG G+ + E Sbjct: 178 TLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAIT 237 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I++LNVS AAA+ +Y Sbjct: 238 IPMYGDIESLNVSIAAALCMY 258 >gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] Length = 227 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 251 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 14/249 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 +KK+ +K R + L G H V A+ + + + +L+ + WD + Sbjct: 15 WKKL--LTKKGREETG--CFLLEGFHLVEEAVKSQA-PLVELIVDERTTIPPGWDVS--- 66 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V +T+ K + QG+A + + + +++D V DP N+G Sbjct: 67 DVPVVIVT-ETVMKAISSTETPQGIA----AICRQRPHELTGVKTALLIDAVQDPGNLGT 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++R+A A D +I + + + + ++ G+L H+P ++ ++ + + ++ G Sbjct: 122 MIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPVVK-GDVAEWITRLKEQGVPV 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + ++ ++ AL++G EG G+R + E T ++ + G ++LNV+ AA Sbjct: 181 YGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA 240 Query: 270 AVALYITQN 278 + LY Q Sbjct: 241 GILLYSLQT 249 >gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 92 PVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 P++ Q ID++ GK H GL TL AV ++S L +++ V DP N G Sbjct: 50 PIEQNSRQAIDELAQGK--THGGLLALCGERRFQTLQAVAEKDSVFLALIEGVEDPFNFG 107 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILR+ A CDG+I R + + V+ K+++GA E++ I +++ L +M Q Sbjct: 108 YILRTLYAAGCDGVIIPPRNWTTAAGVVTKASAGASEYLNLIVATDMEALLHEMKQADIQ 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I L K+ L +G E +GL Q Sbjct: 168 LICAQRKDAISLYDYAFPLKLCLAIGGEMRGLSKHVQ 204 >gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480] gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480] Length = 510 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 73/242 (30%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL------------------ 135 T+DK+ GK H G+ LE +PL P T+ ++ NS L Sbjct: 241 TLDKMTGKRP-HNGMVLEASPLPKPPVLNFQTVVSMSNSHFLAQLAPQPDEQAAVNGTDG 299 Query: 136 -------------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++LD + DP N+GAI RSA F D I + S S V+ Sbjct: 300 YIPFEARRKGAKASRYPFTLLLDGILDPGNLGAIFRSAHWFGADAIAFSPLNSAPISPVV 359 Query: 177 AKSASGALEHIPYIRISNLTDAL--QKMHSWGF-----QTIGLSSD---------SKKPL 220 K+A+GA E +P + I ++T + + + W F L++D S L Sbjct: 360 MKAAAGATETVPTLAIRDVTTFITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSL 419 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAA 269 E+ L+LG EG GL+ K + A A + +PG + +LNVS A+ Sbjct: 420 STELTKAPCVLMLGGEGSGLQQKIKNRAD--AFVTIPGAYSDNICDDIAGVSSLNVSVAS 477 Query: 270 AV 271 A+ Sbjct: 478 AL 479 >gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10] gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10] Length = 266 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + +++VLD + DP N+G I+RSA A G++ + + + +S G+L H+P Sbjct: 110 LRENGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247 + +L L + G + + + ++ E + K +++G+EG+G+ P+ Sbjct: 170 VLE-GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW-IVIGSEGRGVSPEVAAL 227 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + MPG ++LN + AA+V +Y + Q +A Sbjct: 228 VDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYA 263 >gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] Length = 177 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HN+G++LRS AF + + + SA + K+A GA + + + + Sbjct: 25 LVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYFA 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 +DA+ ++H+ G + + + + Q ++ ++ A++LG E KG++ + Sbjct: 85 ETSDAVDELHANGTKVFAVEQVANATMLQSLETKGGERYAVVLGNEVKGVQQTVVDRCDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS AA + ++ FAK Sbjct: 145 CLEIPQFGTKHSLNVSVAAGIVVW----EFAK 172 >gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] Length = 238 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 6/145 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP NIG ++R+A+AFS D +I + + L +S GA HI I +L Sbjct: 99 LILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIY-DDL 157 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + IG + ++ + ++Q ++K+A I+G EG G+ + + ++ Sbjct: 158 KTVISTLKKNNVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIP 217 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 + I++LNV+ A ++ +Y HF Sbjct: 218 I-NTIESLNVAIAGSIMMY----HF 237 >gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603] gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603] Length = 246 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 9/153 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D Q+L++ D + DP N+G ++R+A A D I+ K + P + VL +++ G Sbjct: 97 PDYDVTTAKQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ HIP I +++LQ ++++ G + D+ ++ + ALILG EG+G+ Sbjct: 155 SVFHIPVI-----SESLQSYINTFNGPVYGTALDNAVSFKEIEAQETFALILGNEGEGVD 209 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P E T + + G ++LNV+ A ++ LY Sbjct: 210 PALLEHTTQNITIPIYGQAESLNVAIAGSILLY 242 >gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] Length = 281 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145 P+ T+P + + +VG +VH+G A + P+ V ++ L+ VL+ ++D Sbjct: 81 LPIYTLPKEEMSTLVGF-SVHRGY---FACMPRPSRRTVASLNLNSASLICVLETISDVS 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DAL 199 NIGA+ RSA AF DGII + + +++ GA+ +P+ + ++ T D Sbjct: 137 NIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQAASATSHTWAADTA 196 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHM 256 + S GF I + D ++ K AL G+EG GL + + + M Sbjct: 197 CVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKALWFGSEGWGLSQEARAACDMSVMIPM 256 Query: 257 PGIIKALNVSNAAAVALY 274 I +LNV+ ++AV + Sbjct: 257 QRGIDSLNVAASSAVFFW 274 >gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] Length = 290 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV + L ++ D P NIG+I+RSA AF DG+I T + ++++G+ + Sbjct: 112 AVHDGFLGLLFDRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAV 171 Query: 188 PYIRISN---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 P +R + + + L K + G +G D + + + + L++G E GL Sbjct: 172 PVVRSPSHHEVVEWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSA 231 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + M G +LN SNAA+V LY Sbjct: 232 AWRDLCDHVVSIPMTGSASSLNASNAASVVLY 263 >gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 271 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N++ + LD V DP N+G I+R+A A D +I +K + S +S+ G++ IP Sbjct: 124 KNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPV 183 Query: 190 IRISNLTD-ALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + TD ++ ++ W +T +G S +P Q + I G EG G+ K Sbjct: 184 V-----TDVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGISQKI 238 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + +++LNVS A AV L+ Sbjct: 239 LNISDKKIYIPLKSNVESLNVSIATAVILF 268 >gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f. nagariensis] gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f. nagariensis] Length = 620 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + LD V DP N+GA++RSA G++ R SAV++K+++GALE + Sbjct: 347 VWLALDEVVDPQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCR 406 Query: 194 NLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSM 251 NL L G+ +G ++ S + D+ L+LG+EG GLR + + + Sbjct: 407 NLPRTLMDARDRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGL 466 Query: 252 AHLHM 256 + M Sbjct: 467 VRVDM 471 >gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81116] gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116] gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni M1] gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 227 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] Length = 261 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VL+++ DP N+G I R+A A GI+ +K + + +S GA+ IP+I + Sbjct: 111 VLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDD 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ G + + E A ++G EG GL +T A + Sbjct: 171 LKGTIDELKREGITVYAAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILI 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LN + A+AV ++ Sbjct: 231 PMEGGAESLNAAVASAVLMF 250 >gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] Length = 229 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAK 178 L LD R + L ++L+HV PHN+ AILRS CD + + ++ S Sbjct: 11 LKAVLDG-RMANLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHAVSLQGRPRTFNS 64 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236 +A G+ + +P + DA+Q++ + GF+ G L ++K + + A +LGAE Sbjct: 65 TAQGSQKWVPLYDHPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCDFTG-PTAFVLGAE 123 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL ++ + M G++++LNVS AAA L+ Sbjct: 124 KWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLF 161 >gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 227 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] Length = 264 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 111 HQG----LALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG LA L L A R + L + LD V DP N+G + R+ A GI+ Sbjct: 87 HQGVVARLAAGELTSLDDVLAATRAAPLPVAVALDRVQDPGNVGTLARTLFALGGGGILL 146 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + AK+++G L +P +++NL AL GF +G + + + E Sbjct: 147 PRHEGARLGPGAAKASAGTLARLPVAKVTNLAQALDAAIEAGFSIVGAAGEPEADNALEA 206 Query: 225 KND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + L+LG E +G+R ++ + + I +LNV+ A A+ L Sbjct: 207 TADFPLILVLGNEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256 >gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 267 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I S +A++++G+L H+P R N+ D L + Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQ 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++D + L + + A + G E GL +E A + + G + Sbjct: 187 LRKSGMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 245 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 246 SLNLATAASICLY 258 >gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 268 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G L P + + ++ ++V+ V D NIGAI Sbjct: 81 IPVYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEEVCGGARRIVVIHGVTDTTNIGAI 140 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A DG++ T + + + G++ IP+ AL+++ GF+T Sbjct: 141 FRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWTWADAPLAALRRL---GFRTA 197 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ SD PL+ + ++AL++G EG GL T A + M + +LNV+ Sbjct: 198 ALALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAEADYTVRIPMAHGVDSLNVAA 257 Query: 268 AAAVALY 274 A+AVA + Sbjct: 258 ASAVAFW 264 >gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057] Length = 246 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 D ++ S + + S +E+ + + AL++G EG+G+ P+ E A + H+ Sbjct: 164 ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTEAADILVHI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 224 SMKGQAESLNVAVAAGILIF 243 >gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 267 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I S +A++++G+L H+P R N+ D L + Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQ 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++D + L + + A + G E GL +E A + + G + Sbjct: 187 LRKSGMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 245 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 246 SLNLATAASICLY 258 >gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3] Length = 227 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 9/185 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWG 206 I R+A A +I E + +++SGA +P I ISN DAL ++ G Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLP-IAISN--DALSVINELKQVG 154 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F K+ +I N K L+LG+EG GL K + + M +LNVS Sbjct: 155 FYFYASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVS 214 Query: 267 NAAAV 271 A A+ Sbjct: 215 AAFAI 219 >gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] Length = 181 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 112 QGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E A L P L D ++ L L+ V DP N+G ++R+A A DG++ +K + Sbjct: 16 QGIVAEIA-LEQPVLPDQLQGRYL--YLEDVQDPGNVGTMIRTADAAGFDGVMLSKASAD 72 Query: 171 SESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S +S G+ HIP ++ L A Q + T+ +S + L Q D Sbjct: 73 LYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASIDYRQLPQ---TD 129 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 130 RFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMF 176 >gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 10/144 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD V DP NIG ++R+A A G++ + Y+P L +S G+ H+P I Sbjct: 110 LLLDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPK----LLRSMQGSHFHLP-IY 164 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATS 250 NL D ++K +S G + + Q++ K +ALILG EG G+ T Sbjct: 165 QGNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNGVAKDVLAATTQ 224 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 ++ +PG ++LNV+ AA + ++ Sbjct: 225 NLYIPIPGNAESLNVAVAAGILMF 248 >gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865] gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865] Length = 153 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 67/138 (48%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 2 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 61 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF +D + + ++ ++GAE +G+ + Sbjct: 62 DTALAMAQLRQAGFAVAATLADGGEDVFAAALPQRLVYVMGAESEGMDRQFARDCDLQLS 121 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 122 IRGSGKVESLNVASATAV 139 >gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 246 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 23/181 (12%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS 214 G+I + + + S +S G+ H+P R+S+ L +A K + LS Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQALLEEA--KEAAIPVLATTLSK 184 Query: 215 DSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 DS E I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + + Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILI 242 Query: 274 Y 274 + Sbjct: 243 F 243 >gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b [Rattus norvegicus] Length = 221 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 21/166 (12%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQTI 101 L+GV AL R + +LL + L R+ +P P + Q + Sbjct: 50 LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRR----QKL 105 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154 D + G + VHQG+ +E + L D ++ QL +VL+ + DP N+GA++RSA Sbjct: 106 DALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSA 164 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 D +IT++R S + V++K+++GA+E + +L LQ Sbjct: 165 YFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQ 210 >gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 190 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAK-SASGA 183 A R L +V+++V+DPHNI A+LRS CD G++T Y+ E L++ S++ A Sbjct: 6 ARRQPDLTVVIENVHDPHNISAVLRS-----CDAVGLLTVHLVYTIEEWPELSRVSSASA 60 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + +R ++ Q + + GF LS+ S+ + ++ +AL+ G E +G+ Sbjct: 61 VKWLDIVRHESIEACYQALRAQGFTIYATHLSAASRDLYDLDLTG-PVALVFGNEHRGVS 119 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G++++LN+S A AV+LY Sbjct: 120 DEAVANADGSVVIPMMGMVQSLNISVACAVSLY 152 >gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 64/138 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 154 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + AL ++ GF D + + ++ ++GAE G+ Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESDGMDRAFARDCDLQLS 273 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 274 IRGSGKVESLNVASATAV 291 >gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 459 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-----Y 189 ++VLD + DP N+G +LRSA+AF G+ + +++ GA +P + Sbjct: 303 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 362 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQ 245 I + L + Q G PL Q + + + L+LG+EG GL K+ Sbjct: 363 IHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEKSW 422 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + M G ++LNVS A + LY+ Q Sbjct: 423 QLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQ 453 >gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU121] Length = 246 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 9/153 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D Q+L++ D + DP N+G ++R+A A D I+ K + P + VL +++ G Sbjct: 97 PDYDITTAKQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ HIP I +++LQ ++++ G + D+ ++ + ALILG EG+G+ Sbjct: 155 SVFHIPVI-----SESLQSYINTFNGPVYGTALDNAVSFKEVEAQETFALILGNEGEGVD 209 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P E T + + G ++LNV+ A ++ LY Sbjct: 210 PALLEHTTQNITIPIYGQAESLNVAIAGSILLY 242 >gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118] gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118] Length = 356 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 205 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 264 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 265 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 324 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 325 IRGSGKVESLNVASATAV 342 >gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] Length = 246 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 32/233 (13%) Query: 53 GVHTVSAALNNPSR--KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107 G H A+ R KIF L + ++ LA W + T PQ I ++ K Sbjct: 32 GWHLFEEAVQAGVRIEKIFALESYRDQLAAFPQTVWVSEDILQDLADTQTPQGIVAVIQK 91 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 E V GL P + + L+ V DP N+G ++R+A A G+I + + Sbjct: 92 EEV--GL---------PDFSQGK----FLFLEDVQDPGNVGTMIRTADATGFTGVIVSDK 136 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLSSDSK-----KPLE 221 + S +S G+ H+P R+S T + K + LS +SK PLE Sbjct: 137 SADIHSLKTLRSMQGSHFHLPIYRMSLATFIEEAKKSNLPILATTLSKESKDYRELSPLE 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G EG+G+ E+A + H+ M G ++LNV+ AA + ++ Sbjct: 197 ------NFALVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] Length = 265 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 20/257 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ +P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALN 264 G + ++ P + ALI+G EG G+R QE T +L++P G ++LN Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVR---QEILTKTDQNLYIPIYGGAESLN 246 Query: 265 VSNAAAVALYITQNHFA 281 V+ AA + Y Q+ A Sbjct: 247 VAVAAGILTYYLQSPVA 263 >gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] Length = 250 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 1/141 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD + +P N+G I+RS A + DGII K+ S S ++ K++SG L +P I N Sbjct: 110 LIALDGIQNPQNLGMIIRSCAAGNVDGIILPKKSSAKISPLVIKASSGTLFKLP-IYYCN 168 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + + LSS +K + + +K +LG E G+ P+ ++ + Sbjct: 169 TLDEIFPDLDADTRIYSLSSHAKTSIYDVVPTEKSIFVLGNESDGVSPEVEKLCNDSISI 228 Query: 255 HMPGIIKALNVSNAAAVALYI 275 M +++LNV+ A++ ++ Sbjct: 229 PMQRGVESLNVAVTASLLAFM 249 >gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] Length = 227 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLTMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 371 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ ++ L+ V +PHN+G I+R+ F G++ + S ES ++A G EHI I Sbjct: 221 DTDCVLALEDVGNPHNLGGIMRTCAHFGVKGLM-VQDASMLESGAAVRTAEGGAEHIQAI 279 Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 AL + G+ + SS PL + K+ L+LG E GL + Sbjct: 280 DADGFDGALDEFRRAGYTIVTTSSHKGTTPLTKATLPKKMVLVLGQERDGLSETVMQQGD 339 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 340 LSLSIGGTGQVESLNVSVATGILLAEWWRQN 370 >gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+G I+R+AVA GI K + +S AL +IP Sbjct: 118 LYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDV 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L++ + +T S ++ KP + +ILG EG G+ + E Sbjct: 178 TLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAIT 237 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I++LNVS AAA+ +Y Sbjct: 238 IPMYGDIESLNVSIAAALCMY 258 >gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 269 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 7/182 (3%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + ++V + A QG + + P L +R ++ ++L DP N+G +LR A A Sbjct: 85 ERVARVVAEAA--QGWFATASFAVFPPLHELRG-RVALILPETQDPGNVGTMLRLADACG 141 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 + ++ + S + +++ G++ H+P R S+L + +H + G + D+ Sbjct: 142 AGSVFMGEQSADVSSPKVIRASVGSVFHVPTPRFSDLAQLVSTLHESQWLVAGTALDAPL 201 Query: 219 PLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ + K+A ++G E GL +E + + M G ++ NVS AA +AL+ Sbjct: 202 AWGFEVASQFADKKVAWMMGNEAHGLNAAQRELCDVLMAIPMFGQAESFNVSQAATLALW 261 Query: 275 IT 276 +T Sbjct: 262 MT 263 >gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 345 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ L+ + +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 195 DQDCVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ D L G+ + SSD + L +K+ L+LG E L +E Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFGATLPEKMVLVLGREYDFLPEAAREPDDL 313 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278 ++ G +++LNVS A V L + QN Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 264 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S ++ LD + DP N+G + R+A+A D + P VL +S++GA+ +P+ R Sbjct: 100 SNFVLALDRLQDPGNLGTLFRTALAADVDLVWLALGADPLGQKVL-RSSAGAVLKLPFQR 158 Query: 192 --------ISNLTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEG 237 I+ L + L+K GFQ +G S + P + L+LG EG Sbjct: 159 LGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPYWELDWTKPTVLVLGNEG 218 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G+ P Q+ T L +++LNV++AA Sbjct: 219 DGVHPTIQDCCTHSVSLPHNQQVESLNVASAA 250 >gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] Length = 181 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ E A L P L + L L+ V DP N+G ++R+A A DG++ +K + Sbjct: 16 QGIVAEIA-LEQPELPDQLQGRFL-YLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADL 73 Query: 172 ESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S +S G+ HIP ++ L A Q + T+ +S + L Q D+ Sbjct: 74 YSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASIDYRQLPQ---TDR 130 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 131 FILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMF 176 >gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera] Length = 1306 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-----Y 189 ++VLD + DP N+G +LRSA+AF G+ + +++ GA +P + Sbjct: 1141 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 1200 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQ 245 I + L + Q G PL Q + + + L+LG+EG GL K+ Sbjct: 1201 IHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEKSW 1260 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + M G ++LNVS A + LY+ Q Sbjct: 1261 QLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQ 1291 >gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 259 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAV 129 L T+ AL + A LP + V DK+ HQG+ + P+ TLD Sbjct: 51 LFCTEAALEKCPELAGLPGEHYL--VEDHVADKLA-DVGTHQGVFGIFRTPV--HTLDEA 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ V DP N+G +LRSA AF DG++ + + + +++ GA +P Sbjct: 106 KTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPV 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247 + + + A+ + + + + +PL + +++G+EG+GL +T Sbjct: 166 MEVGAMPAAIAALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAA 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++LN A ++ L+ HF Sbjct: 226 CSGTVRIPMTDRVESLNAGIAGSILLW----HF 254 >gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 257 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 16/149 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 ++ LD + DP N G ILR+A F + ++ T Y+P + ++A G+ + + Sbjct: 109 ILALDGLQDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPK----VVRAAMGSHWDLALV 164 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R L D L ++ + GF G + P + + L+LG+E GL+P +E T Sbjct: 165 RTGALPDLLAQLQANGFTCYGADLEG-TPASRWQPREPAVLVLGSEAHGLQPAVRERLT- 222 Query: 251 MAHLHMPG-----IIKALNVSNAAAVALY 274 A + +PG ++LNV+ AA V LY Sbjct: 223 -ARVTVPGSPRRQATESLNVAMAATVLLY 250 >gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056] Length = 246 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 D ++ S + + S +E+ + + AL++G EG+G+ P+ E A + H+ Sbjct: 164 ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTEAADILVHI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 224 SMNGQAESLNVAVAAGILIF 243 >gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 246 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 23/181 (12%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I + + + S +S G+ H+P R+S + AL K + ++ SK Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMS--SQALLKETKEAAIPVLATTLSK 184 Query: 218 KPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ I+N L++G EG+G+ P E+A + H+ M G ++LNV+ AA + + Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMVESADQLVHISMKGQAESLNVAVAAGILI 242 Query: 274 Y 274 + Sbjct: 243 F 243 >gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] Length = 265 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ +P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 293 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%) Query: 125 TLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LDA+R + L+V+ DP N+G I+R+A AF +I + S + Sbjct: 107 SLDALRRELPDAEVGETLVVIAQGRDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVV 166 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------- 229 +S++G++ H+P + + +A +H G +G S S ++ + I Sbjct: 167 RSSAGSVFHLPVCLVPSFAEARDLIHGRGAALLGTSGGSGSLDLADLLVEGISSRSRLSQ 226 Query: 230 --ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A G E +GL + + + M G ++LNV++AAA L+ +Q Sbjct: 227 SHAWAFGNEARGLSAEEMRACDGLVAIPMTGRAESLNVASAAATCLFASQT 277 >gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49] Length = 246 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAACFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + K D L++G EG+G+ P+ A + H Sbjct: 164 ADFIRLAQSSSLLILASTLSSTSIDYREVDSK-DSFVLVMGNEGQGISPEMTAAADVLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] Length = 227 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 F +K + +T + K HQG L+ L+ ++ + +++L ++D NIGA Sbjct: 41 GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A A +I E + +++SGA +P + ++ + ++ GF Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+ +I N K L+LG+EG GL K + + M +LNVS A Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAF 217 Query: 270 AV 271 A+ Sbjct: 218 AI 219 >gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae] Length = 495 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 92/314 (29%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81 + P + F+YG V AAL R +++L + K AL +L Sbjct: 171 TTPASEFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAF 230 Query: 82 -DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEAVHQGLALETA 119 WD A PH P P +K+VP + V G Sbjct: 231 GGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----GVELGAQSREE 286 Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 L++ T D ++ ++++LD + DP N+GAI+RSA D II R S Sbjct: 287 ALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAP 346 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S V K+++GA E++ + +SN D +Q K + W F ++D+ P + + I Sbjct: 347 LSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGPASKYVDTASI 402 Query: 230 ------------------ALILGAEGKGLRPKTQETATSM-----AHLHMP-GI------ 259 +++G+EG GL + A S+ A L P G+ Sbjct: 403 VEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSR 462 Query: 260 IKALNVSNAAAVAL 273 + +LNVS AAA+ + Sbjct: 463 VDSLNVSVAAALLM 476 >gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] Length = 265 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ +P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265 G + ++ P + ALI+G EG G+R + A + +L++P G ++LNV Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247 Query: 266 SNAAAVALYITQNHFA 281 + AA + Y Q+ A Sbjct: 248 AVAAGILTYYLQSPVA 263 >gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] Length = 237 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 5/185 (2%) Query: 92 PVKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV + + I+ + GK H GL + + L+ R+S L+VL+ V DP N G + Sbjct: 47 PVYRLKREEINTLAFGK--THGGLLADVEERIMDHLEISRSS-FLLVLEGVVDPFNFGYM 103 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A + DGI+ + + +V+ KS++GA +H I +L L+ + GF Sbjct: 104 VRTAYSAGVDGILIPEYHWHDLESVILKSSAGAFDHCSIIPSKDLAQDLRLLKEKGFTIY 163 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAA 269 D+ ++ + +G E +GL + E ++ + G ALN ++A Sbjct: 164 AGYRDNAIVYDEADYTNPTVFCVGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASAC 223 Query: 270 AVALY 274 +V + Sbjct: 224 SVFCF 228 >gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] Length = 265 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIR 191 L++LD + +PHN+GAI+R+A F D ++ + ++ PSESA + A G E++ R Sbjct: 120 LLLLDGIGNPHNLGAIVRTAAFFGLDRLVISDHPEQAQPSESAY--RVAEGGFEYVQIYR 177 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250 A++++ ++ +G + L + K A++LG E GL +T Sbjct: 178 ADRFATAVRRLAE-SYRVVGTALGGHPALGRLTGGPKPPAVLLGNEEDGLPAETLRACAE 236 Query: 251 MAHLHMPGIIKALNVSNAAAV 271 +A + G +++LNV+ AA+ Sbjct: 237 LATIPGAGQVQSLNVAATAAI 257 >gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str. Bath] Length = 282 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRN----SQLLMVLDHVNDPH 145 P + +PP+ + ++ G +H G+ P P TL+ + ++LD V +PH Sbjct: 84 PYRLLPPEEMARVAGT-VLHGGIVAAVRPREVPDLTLETAQRWAKAGAATVLLDGVGNPH 142 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAV---LAKSASGALEHIPYIRISNLTDALQKM 202 N+GAI R+ F ++ + P+++ + + A G LE + R++ AL+ + Sbjct: 143 NLGAIARTLAFFGLGHLVLSD--HPAQAGLSDAAYRVAEGGLEFLDVRRLTGAAQALRSL 200 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGII 260 F +G + ++ + + D+ I L+LG E GL P T ++ + G I Sbjct: 201 RPH-FHVVGTALHARGIPPEAVPRDRRPILLVLGNEENGLPPPTLAACETVVTIPGGGQI 259 Query: 261 KALNVSNAAAVALY 274 ++LNVS AA+ Y Sbjct: 260 QSLNVSATAAILTY 273 >gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment'] Length = 261 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 71/136 (52%) Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GAI+R+A A +G+ K + + +AK+++GA EH+ R++ L Sbjct: 103 DGVQDPQNLGAIIRTAEAAGANGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPAF 162 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + G T+G + + L + + +++G E +GL ++ +A + G Sbjct: 163 LAWLKDQGIWTLGADPSAVQSLYEIDLRAPMGVVIGGEHRGLTMLVRQRCDLLARIPTRG 222 Query: 259 IIKALNVSNAAAVALY 274 + +LN + AAAV L+ Sbjct: 223 RVDSLNAAAAAAVFLF 238 >gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] Length = 243 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S +++LDH+ DP N+G I+RSA AFS II + +++ G++ + +I Sbjct: 98 SDKILLLDHIQDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIE 157 Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I++L D L K + + G S D K DKI L +G E G+ + + Sbjct: 158 VEINDLKDLLDKNYKLVLADMNGKSVDYYKSC------DKIILAIGNEANGISKSLKGLS 211 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G I++LN AA+A I N+F++ Sbjct: 212 NDFVSIKMDGRIESLN----AAIAASILMNNFSQ 241 >gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] Length = 255 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 70/140 (50%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD++ +P N+G I+RS A + DG+I ++ + S ++ K++ G + P + Sbjct: 114 LIALDNITNPQNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKASVGTVFKAPLLHCET 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + LSS +K+ L + + ILG E +G+ + Q+ + + Sbjct: 174 LAQGLGALRDRDVTICTLSSHAKQSLFEYQAQQSVVYILGNETEGVSEEVQKLSDQQLSI 233 Query: 255 HMPGIIKALNVSNAAAVALY 274 M +++LNV+ AA+ + Sbjct: 234 PMNNGVESLNVAVTAALIAF 253 >gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] Length = 264 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 17/213 (7%) Query: 75 KNALARLDWDANLPHPFPVKTVPP-QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132 KN L LD D P + P +D V + V A + PT D S Sbjct: 60 KNILDLLDLDTVQSVPKYIAQDPVFDKVDNTVNGQGV-------VAIVSKPTYDIESISI 112 Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189 L + LD V DP N+G I+R+AVA GI K + +S AL IP Sbjct: 113 VDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLY 172 Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I ++ L D + + + + T + + P + L+LG EG G+ P+ Sbjct: 173 EDITLTLLHDMVTESNMTSYVT---ALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNL 229 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T+ + M G +++LNVS AAA+ +Y Q Sbjct: 230 CTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262 >gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] Length = 266 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 10/147 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188 QLL+++D + DP N+G I+R++ A D +I T Y+P ++ G+L H+P Sbjct: 117 QLLVLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKT----LRATMGSLFHLP 172 Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I A + + G + +G+ D +P+ +AL++G+E G+ + Sbjct: 173 VIMAGEPVQAAELLLQAGIRLVVGMPQDC-QPVYSVDLTGPVALVVGSEANGVSEGLKRL 231 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ MPG ++LN + AAA+ LY Sbjct: 232 PAIPVNIPMPGHAESLNAAIAAAIMLY 258 >gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 390 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 239 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 298 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 299 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 358 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 359 IRGSGKVESLNVASATAV 376 >gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] Length = 268 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ L +++D + DP N+G ILR+A DG+ K + ++ G+L +P Sbjct: 113 IEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRATMGSLFRVP 172 Query: 189 YIRI---SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + S+LTD LQ Q + ++K + N AL++G EG G +P+T Sbjct: 173 VFGLNSPSDLTDILQMKD---IQMVAADIEAKDYYYELDYNQPTALVIGNEGAGAQPETL 229 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + + I +LN + A+ + +Y Sbjct: 230 KLADKKVKIPLSEGIDSLNAAIASGIIMY 258 >gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92] gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus 525.92] Length = 226 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG + ++ ++ + VL ++D NIGAI RSA A C+G+I + Sbjct: 61 HQGFLAKVGEYEFAAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVAKSIN 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229 E + +++SGA IP + L ++ GF +S+ K E+K D K Sbjct: 121 MEGVL--RASSGAAYEIPIALFEDGLSLLNELKQSGFCLYATASNGKNV--HEMKFDPKR 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ALI+G+E +G+ K + + +LNVS A A+ Sbjct: 177 ALIMGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAI 218 >gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 261 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 26/249 (10%) Query: 39 KSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + Q + LFL G+ TV A+ + + A ++ R + + V Sbjct: 18 KQKKYRQQQGLFLAEGLRTVEEAVRYGAVQSIFYTAIEDDRTRAVLEEAAAKQIKLVCVS 77 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + KI E QG+ + + S LD + + ++L+VLD V DP NIG +LR+A A Sbjct: 78 DKVLKKIADTE-TPQGI-IAVCEMRSKRLDEFLASGKMLLVLDRVTDPGNIGTMLRTADA 135 Query: 157 ---------FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSW 205 C I Y+P +++ G+L H+P +S L++ L Q Sbjct: 136 AGVGGLLLLQGCADI-----YAPKT----VRASMGSLFHLPV--LSGLSEELLVQAARKA 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ + D L + ++A ++G E G+ P A + M G ++LNV Sbjct: 185 GYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNV 244 Query: 266 SNAAAVALY 274 + AA + ++ Sbjct: 245 AMAAGIVMF 253 >gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617] Length = 344 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L G+ + SS PL K+ L+LG E GL T + Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKMVLVLGQERDGLSDSTFQQGDLSVS 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 317 ISGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] Length = 246 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ ++ + + +S G+ H+P R+ Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSMQGSHFHLPVYRVKT- 163 Query: 196 TDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D L+ K LS DS E +D AL+LG EG+G+ + E A ++ H Sbjct: 164 ADFLELAKQVQLPILATTLSKDSMDYRELAPLSD-FALVLGNEGQGISHEMAEAADNLIH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGRAESLNVAVAAGILIF 243 >gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length = 278 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGA 149 PV V + + ++ G + +H+GL + PT+ +V + ++ ++VL+ V D NIG+ Sbjct: 79 IPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIGS 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHSW 205 + R+A D I+ + + + + G + +PY ++ Q+ + Sbjct: 138 MFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELADA 197 Query: 206 GFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF + L+ D + LE + +K+AL++GAEG GL A + M +L Sbjct: 198 GFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSL 257 Query: 264 NVSNAAAVALY 274 N++ +AA+A Y Sbjct: 258 NLATSAAIAFY 268 >gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 260 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 LL++L+ + DP N+G I R+A A GII T Y+P +S G++ +P+ Sbjct: 110 LLLLLEDIQDPGNLGTIFRAAEAAGATGIIMSSGTADIYNPK----TIRSTMGSIYRMPF 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + ++ +K+ + G +T ++ A ++G EG+GL E A Sbjct: 166 LYTKDIAAMQEKLKARGIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKAD 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +++LN + +AA+ ++ Sbjct: 226 ARIKIPMSGEVESLNAAVSAAILMF 250 >gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] Length = 247 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 123 SPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 SPT L+ ++ LL L+ V DP N+G ++R+A A G+ + + + + +S Sbjct: 94 SPTVLEDMQGKYLL--LEDVQDPGNLGTLIRTADAAGFTGVFLSDKSADLYNPKTLRSMQ 151 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGL 240 G+ H+P R N+ Q+ G I + + Q I+ + L++G EG G+ Sbjct: 152 GSHFHLPVWR-DNVLQFCQQAKEVGVPVIASTLSDQSVDYQSIETPESFILVMGNEGAGI 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E A ++ H+ MPG ++LNV+ AA + ++ Sbjct: 211 SSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244 >gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH] gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH] Length = 221 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 14/226 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGK 107 + +YG V + + +LL K +LD + N F + + +T KI + Sbjct: 1 MIVYGKRVVEYIIQKHGNIVKELLIAK----KLDKKELNKLKQFKINFIDNKTAQKI-SR 55 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG + +P + +++ ++LD V D NIGAI R+A A D +I T Sbjct: 56 NGNHQGYFAKID--FTPGEWEITGNKI-VILDGVTDMGNIGAITRTAYALGVDLLIITGI 112 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 V+ SA AL+ + + N+ D + + + G+ G E +I+ D Sbjct: 113 KELKWPQVIRTSAGAALD-MKILTYHNILDLINILKTKGYIIAGADMGG----ECKIEAD 167 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ALILG EG+GL+ K +E + + M +LNVS AA + + Sbjct: 168 KLALILGNEGEGLKKKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213 >gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] Length = 264 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 6/153 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189 + L + LD V DP N+G I+R+AVA GI K + +S AL IP Sbjct: 113 DDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLY 172 Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I +S L D + + + + T + + P + L+LG EG G+ P+ Sbjct: 173 EDITLSLLHDMVTESNMTTYVT---ALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNL 229 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T+ + M G +++LNVS AAA+ +Y Q Sbjct: 230 CTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262 >gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 271 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWDAN- 86 D++ + S +++ S + GV V L SR + + LL T L L D + Sbjct: 17 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRML--ASRFVPRALLGTDRRLTELGTDLDG 74 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLS--PTLDAVRNSQLLMVLDHVND 143 L PF T + + + +G LA + AP L+ LD R + VL+ VND Sbjct: 75 LAAPFYRATA--EVMAEAIGFHLNRGVLASASRAPELTVAEVLDGART---VAVLEGVND 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G++ R+A D +I + + + G +P+ R +N L + Sbjct: 130 HENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILR 189 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 F+ + ++ D P + + ++IA+++GAEG GL+ T +A + M Sbjct: 190 DNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARG 249 Query: 260 IKALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 250 TDSLNVATAAALAFY 264 >gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 301 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 8/191 (4%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGA 149 PV V + + ++ G + +H+GL + PT+ +V + ++ ++VL+ V D NIG+ Sbjct: 102 IPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIGS 160 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHSW 205 + R+A D I+ + + + + G + +PY ++ Q+ + Sbjct: 161 MFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELADA 220 Query: 206 GFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF + L+ D + LE + +K+AL++GAEG GL A + M +L Sbjct: 221 GFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSL 280 Query: 264 NVSNAAAVALY 274 N++ +AA+A Y Sbjct: 281 NLATSAAIAFY 291 >gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] Length = 246 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 21/180 (11%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I +V KE V Q A + + L+ V DP N+G I+R+A A Sbjct: 82 PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSD 215 G+I + + + S +S G+ H+P R+S+ L++ G + LS D Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA-LLKETKEAGISVLATTLSKD 185 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S E I+N L++G EG+G+ E+A + H+ M G ++LNV+ AA + ++ Sbjct: 186 SVDYRELPPIEN--FVLVMGNEGQGISSLMAESADQLVHISMKGKAESLNVAVAAGILIF 243 >gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] Length = 286 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRN---SQLLMVLDHVNDP 144 PV P + ++ I G +H+G LA P L+ L + R ++ + +L+ + D Sbjct: 86 PVFVAPEEVLESITGFH-LHRGALAAMNRPELAGVPELLSSARGGAGAKRVAILEDLVDH 144 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA RSA A D ++ T R + + + G + +P+ RI A+ ++H+ Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AMDELHA 203 Query: 205 WGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 GF L+ SD+ L++ + ++A++LG EG GL +T A + + M Sbjct: 204 QGFTVAALALSDTSVALDEFAASPACTAPDSRVAVVLGTEGDGLSHRTITAADEVVRIPM 263 Query: 257 PGIIKALN 264 G + +LN Sbjct: 264 AGGVDSLN 271 >gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 263 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 L++VLD ++DP N+G ++R+A A + G+I + Y+P + ++A G L HIP Sbjct: 112 LILVLDEIHDPGNVGTMIRTARAMNAQGVILLSGSADLYNPK----VVRAAMGNLFHIPV 167 Query: 190 IRISNLT-DALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + +T DAL G+ + + D L K LI+G+E +G+ E Sbjct: 168 --FTGITEDALMTFAQKAGWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEK 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G ++LNV AA + LY Sbjct: 226 SAARVKIPMLGEAESLNVGVAAGILLY 252 >gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115] Length = 246 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 D + S G + + S +E+ + + AL++G EG+G+ P+ A + H+ Sbjct: 164 ADFIILAQSSGLPILASTLSSASIDYREVGSKESFALVMGNEGQGISPEMTAAADILVHI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 224 SMKGQAESLNVAVAAGILIF 243 >gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 363 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 216 CVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 274 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252 ++ D L G+ + SS KPL +K+ L+LG E + L P+ +A + Sbjct: 275 SIVDVLDDFRQAGYTVVMTSSAKGKPLFTTTLPEKMVLVLGREREAL-PEAACSADDLCI 333 Query: 253 HLHMPGIIKALNVSNAAAVAL--YITQN 278 + G ++ LNVS A V L + QN Sbjct: 334 AIDGTGKVETLNVSVATGVLLAEWWRQN 361 >gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 268 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 K R + LF+ TV A + P R + L+ K A + LP PV V Sbjct: 22 KERDLVGRQGLFIAEGETVLRAFVRDAPERVLSLLIDGKRADKLGEVFDGLPDGVPVYVV 81 Query: 97 PPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILR 152 +D I G +H+G+ A PL + L A + +++VL + + N+G I R Sbjct: 82 GQAVLDAIAGFH-LHRGVLAVGAKPQPLSADALLARAGERAIVLVLMGIANHDNLGGIFR 140 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A AF DG+I + + GA +P ++ D + + FQ + L Sbjct: 141 NAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAWLAPGEDVVALLERHDFQALAL 200 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + L + + A++LGAEG GL P A ++ + M G +LNV+ + + Sbjct: 201 SPAADLTLARLDPPARAAVLLGAEGPGLSPAVMARARTVG-IPMAGGFDSLNVATTSGIV 259 Query: 273 LY 274 L+ Sbjct: 260 LH 261 >gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON] gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON] Length = 261 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 LL+VLD V DP N+G ++R+A A +I T +Y+P + ++A G+ H+P Sbjct: 112 LLLVLDAVQDPGNVGTMIRTADAMGFSAVIAGRGTADQYNPK----VLRAAMGSSFHMPV 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L +AL ++ + +++ D+ A+I+G E +G+ K + A Sbjct: 168 YNDVPLPEALTELMER-VSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAA 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LN S AA + +Y Sbjct: 227 YTVSIGMPGRAESLNASIAAGIIMY 251 >gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 330 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++S+L++VL V DP N G +LR A A D +I T + ++ +G+L H+P Sbjct: 171 KDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAGSLFHLPV 230 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIK-NDKIALILGAEGKGLRPK 243 + L + ++ + G Q + + D P + + + A + G E GL K Sbjct: 231 VTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGLDLSQPTAWVFGNEAWGLPEK 290 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 ++ A S + + G ++LN++ AAAV LY + +NH Sbjct: 291 DRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNH 327 >gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] Length = 364 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 8/151 (5%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD L+VL+ V + HNIG I+R+ V + ++ SAV + A G +E Sbjct: 210 LDIPHQKNCLLVLNGVRNAHNIGGIIRTCVCYGISAVVIDD-VELLHSAVAMRVAEGGME 268 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILG-AEGKGLRPK 243 +I + I AL K+ G+Q + LSS+ K ++Q NDK+A +L A+ + L K Sbjct: 269 YIHPLEIDRTETALVKLRQAGYQIVHLSSNKHAKTIKQLQLNDKVAFVLSEADTESLADK 328 Query: 244 TQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273 E + +L + +K LNVS A + L Sbjct: 329 ADE----LINLSLVNPLKHGLNVSVATGILL 355 >gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937] gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937] Length = 235 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 66/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 84 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 143 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ ++ GF + + + ++ ++GAE +G+ + Sbjct: 144 EAPLAMTQLRQTGFAVAATLVEGGQDVFAAALPQRLVYVMGAESEGMDRQFARDCDLQLS 203 Query: 254 LHMPGIIKALNVSNAAAV 271 + G++++LNV++A AV Sbjct: 204 IRGSGLVESLNVASATAV 221 >gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ + V DP N+G ILRSA AF G+ I K SP V+ + +SG++ +P +++ Sbjct: 137 MLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVI-RGSSGSVFRLPVVKV 195 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251 AL+++ + G Q + SS +PL + +++G EG G+ R ++ Sbjct: 196 -EWPAALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTL 254 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A H P +++LN AA++ +Y Sbjct: 255 AIPHSPK-VESLNAGIAASIVMY 276 >gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160] Length = 246 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P RI + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRI-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + K + AL++G EG+G+ P+ A + H Sbjct: 164 ADFIRLAQSSRLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] Length = 261 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N++ + LD V DP N+G I+R+A A D +I +K + S +S+ G++ IP Sbjct: 114 KNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPV 173 Query: 190 IRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + TD L K W +T +G S +P Q + I G EG G+ K Sbjct: 174 VTDVS-TDELIK---WKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGVSQKIL 229 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + +++LNVS A AV L+ Sbjct: 230 NISDKKIYIPLKSNVESLNVSIATAVILF 258 >gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis RP62A] gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] Length = 246 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PT D + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G+ Sbjct: 97 PTYDKTQAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + HIP I D +H + G + ++ AL+LG EG+G+ P Sbjct: 156 IFHIPVI----FDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ +Y Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMY 242 >gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 271 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 8/244 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ--LLATKNALARLDWDANLPHPFPVK 94 + + R + LF+ V +L SR + + L+A K A A LP PV Sbjct: 20 DVRERDLVGRDGLFIAEGAVVVRSLVQSSRTLARSLLVAEKRVTALEPMLAALPPGTPVY 79 Query: 95 TVPPQTIDKIVGKEAVHQG-LALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 T +D+I G +H+G LA+ + P + LDA +++L + + N+G I Sbjct: 80 TATQPVLDRIAGFP-LHRGILAVGERISIPSAADLLDACGPVARVVMLFGIGNHDNMGGI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+A AF D +I + + GA +P R+ D L + + F+ + Sbjct: 139 FRNAAAFGADAVILDPGCCDPLYRKAIRVSVGATLLVPTARLDAGEDPLALLDRFRFEAV 198 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 LS + L + AL+ G+EG GL P A S+ + M G +LNV+ + Sbjct: 199 ALSPAGAETLAALTPPRRAALLFGSEGPGLPPALLARARSV-RIPMAGGFDSLNVATTSG 257 Query: 271 VALY 274 + L+ Sbjct: 258 IVLH 261 >gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780] gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780] Length = 179 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 + L+ V DP N+G ++R+A A G+I + + + S +S G+ H+P R + Sbjct: 38 LFLEDVQDPGNVGTMIRTADAADFTGVIVSSKSADIYSLKTLRSMQGSHFHVPIYRMPVE 97 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + +K + T LS +SK E + + AL++G EG+G+ P E A + H Sbjct: 98 TFVEEAKKGNLPILATT-LSQESKDYRELA-RLENFALVMGNEGQGISPFMVEQADQLVH 155 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 156 ISMKGQAESLNVAVAAGILMF 176 >gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 268 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++ LD R + VL+ VND N+G++ R+A D +I + + + Sbjct: 108 VAEVLDGART---VAVLEGVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 164 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEG 237 G +P+ R +N L + F+ + ++ D P + + ++IA+++GAEG Sbjct: 165 GHALLVPFARAANWPADLNILRDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEG 224 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL+ T +A + M +LNV+ AAA+A Y Sbjct: 225 PGLKEHTMRSADVRVRIPMARGTDSLNVATAAALAFY 261 >gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 235 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D V DP N+G I+R+A +F D +I ++ + + +S G++ HIP IR+ L Sbjct: 95 LICDGVQDPGNLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMP-L 153 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A+ ++ +W Q+IK IA+++G+EG G+ + + Sbjct: 154 DVAIAQIKAWNIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCDGTVKIE 213 Query: 256 MPGIIKALNVSNAAAVALY 274 ++LNV+ A+A+ Y Sbjct: 214 TSQ-FESLNVAIASAIICY 231 >gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 250 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLP----H 89 Q+ ++ Q E G+ TV R++ L ++L L D +A LP + Sbjct: 5 QRKKYRDQEEMFLGEGLRTV--------RELLLHLPGPDSLVALFLSPDAEALLPEAEAY 56 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNI 147 V +V ++ G E+ + P SP L ++++ LD V DP N Sbjct: 57 RGKVFSVDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNA 116 Query: 148 GAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 G ILR+A F D ++ T Y+P +S++G+L +P+ + +LTD L+++ Sbjct: 117 GTILRTAAWFGADALLSGPGTVDLYNPKT----VRSSAGSLFSLPHYSVDSLTDELERLK 172 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK- 261 G+ + S + + E ++ L++G E G+ A + + H G ++ Sbjct: 173 QNGYGVLCSSLEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRV 232 Query: 262 -ALNVSNAAAVAL 273 +LN S +AAV L Sbjct: 233 ESLNASVSAAVLL 245 >gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] Length = 252 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 14/248 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ N+K R + LF+ G H V A+ N + +L+ ++ W+ + Sbjct: 13 KAWKKLH--NKKDR---DKQGLFMVEGFHLVEEAIKNKDC-VKELIIRESIEVPAQWNID 66 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 TV + I K++ QG+ + + + +Q +++LD V DP N Sbjct: 67 GIEI----TVVNEAIIKLLSDTETPQGII--AVCFQTKHAEIIHTAQKVLLLDAVQDPGN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+A A + II + + + +S GA+ H+P ++ +L + + + Sbjct: 121 LGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK-GDLLEMISLLKERE 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G S + K +++ AL++G EG G+ K E ++ + G ++LNV+ Sbjct: 180 IAVYGTSLQNGKVYTCVKPSNEFALVVGNEGNGVSEKVLEQTDQNLYIPIYGKSESLNVA 239 Query: 267 NAAAVALY 274 A+ + LY Sbjct: 240 IASGILLY 247 >gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803] gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803] Length = 291 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 39/295 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I++ + E I S RRN K+++S K+ S+ + + L H V Sbjct: 1 MPVIARAEGEPISS---------RRNPL-IKRIRSLQSKAGRESE-QCVLLEVTHQVQEL 49 Query: 61 L--NNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTID---KIVGKEAVHQGL 114 L +L T L R D A LP P V+ + P+ + V + V Sbjct: 50 LAQGEAWTDPLSVLVTPLWLQRHRDLLAQLPGPVQVQLMTPEALGAALTTVHPDGVACLW 109 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L++ P P + ++ LD + DP N+G +LR+A+A + + P S Sbjct: 110 PLKSLPAAGP------HPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSK 163 Query: 175 VLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIG-LSSDSK-----KPL 220 V+ +SA+GAL +PY R + L AL+ + G Q + L D+ +P Sbjct: 164 VV-RSAAGALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPY 222 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 Q L+LG EG GL P+ + L +++LNV+ AAAV L + Sbjct: 223 WQLDWCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVA-AAAVPLLL 276 >gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 260 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 +++VLD + DP N+G ++R+A A G++ T Y+P + +S G+L H+P Sbjct: 112 MVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPK----VVRSTMGSLFHLPV 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + G+ + + + + + +K AL+LG+E +G+ P+ A Sbjct: 168 FTGVKTGELEEWCRQHGYALWATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G ++LNV+ A + ++ F+ Sbjct: 228 QKVKIPMAGHAESLNVAVAGGIVMFEAARAFS 259 >gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] Length = 266 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 17/211 (8%) Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGKEAVHQGLALETAPLLS 123 R+I L +K AL+R+ +A + + P Q+ + + ++ Q S Sbjct: 66 REIEVLYHSKQALSRISKNAKQDQGVCIDILCPKHQSYEDFLASVSLSQ----------S 115 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P +R L+ LD + +P N+G I+RS A DG++ + + +++ K+++G Sbjct: 116 PD-KTIR----LIALDRITNPQNLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGT 170 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L P + +LT AL + G GLSS + + + + + + +LG E +G+ + Sbjct: 171 LFKAPLLHCESLTGALHESKKQGATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQE 230 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A++ + Sbjct: 231 ISTLCDKRISIPMNNGVESLNVAITASLLAF 261 >gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301] gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 345 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGH 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ PL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLHDFRQAGYSVVNTSSEQGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC 33209] gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC 33209] Length = 278 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A D ++ + R + + + GA+ +P+ R++ Sbjct: 124 VLEDIVDHTNLGAIFRSAAALEIDAVLISPRCADPLYRRSIRVSMGAVFQVPWARLTQWP 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAH 253 + L K+ S GF T+ L+ + E+ +++ALILG EG+G Sbjct: 184 EDLSKLKSAGFSTVALALEQDSMTLDELATKLPERLALILGTEGEGPSAPVLAEVDQTVM 243 Query: 254 LHMPGIIKALN 264 + M G + +LN Sbjct: 244 IPMSGGVDSLN 254 >gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 271 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%) Query: 72 LATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---L 126 L +N LA LD + P PV +D I G +H+G LA+ P L Sbjct: 55 LVLENRLAGLDKILSKAPADLPVYVATSAVMDAIAGFH-MHRGILAMGRKGAPQPAEALL 113 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + L++VL + + N+G+I R+A AF D ++ + + GA Sbjct: 114 DGLPPRALVVVLVGIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALK 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP+ ++ + GF+ LS K + +++++AL LG EG+GL P Sbjct: 174 IPFASFTDTAGFTTTLARRGFEQFALSPRGKTDIRDAQRSERLALYLGTEGEGL-PDDLL 232 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M +LNV+ A+A+AL+ HF+ Sbjct: 233 ASLHNVRITMAEGFDSLNVAAASAIALH----HFS 263 >gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 233 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S ++VLD V +P N+GAILRSA+AF+ ++ + + + +++ GAL + YI Sbjct: 90 SNQILVLDDVQNPDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGALFDL-YIE 148 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + G+Q G +D+ K + K L+LG EG+GLR KT E Sbjct: 149 RLDIHEFITLKKQNGYQVFG--ADAHKSELEPDKTKPFILVLGNEGQGLRSKTIELLDGR 206 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 ++ +++LNV+ A ++ +Y Sbjct: 207 LNIETHH-VESLNVTVAGSILMY 228 >gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] Length = 246 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 16/170 (9%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ E A T+ +V + L L+ V DP N+G I+R+A A DG+ ++ + Sbjct: 83 QGIVAELA-FEEATIPSVLKGKYLF-LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADI 140 Query: 172 ESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-----PLEQEI 224 + +S G+ H+P R+ ++ D L K LS DS PL Sbjct: 141 YNLKTLRSMQGSHFHLPIYRVKTADFLD-LAKQAQLPILATTLSKDSMDYRKLAPLSN-- 197 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LG EG+G+ + E A + H+ M G ++LNV+ AA + ++ Sbjct: 198 ----FALVLGNEGQGISSEMAEAADYLIHISMKGRAESLNVAVAAGILIF 243 >gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 287 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ + VL+ + D N+GA RSA A D ++ T + + + G + +P+ Sbjct: 131 GARRVAVLEDLVDHTNVGAAFRSAAALGIDAVLVTPHCADPLYRRSVRVSMGTVFQVPWT 190 Query: 191 RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRP 242 RI + AL ++H+ GF + LS DS E + ++A++LG EG GL P Sbjct: 191 RIDHWP-ALDELHAGGFTVAALALSEDSVSLGEFSASPACSGADSRVAVVLGTEGDGLAP 249 Query: 243 KTQETATSMAHLHMPGIIKALN 264 +T A ++ + M G + +LN Sbjct: 250 RTIAAADAVVRIPMAGAVDSLN 271 >gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 270 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 10/257 (3%) Query: 26 NHRDYKKMQSFNQ-KSRHTSQPENLFLYG---VHTVSAALNNPSRKIFQLLATKNALARL 81 N D ++ F + R + E LF+ V V A+ + R LL K A Sbjct: 7 NDPDDARISGFRDIRERDLTGREGLFVAEGEVVVRVLASTASRCRPRALLLTEKRVAALS 66 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRNSQLLMV 137 D A L PV +D+I G +H+G LAL P+ P L AV + + ++ Sbjct: 67 DVIAALAPSVPVYVAGQTVLDRIAGFP-LHRGILALGEKPVAPPVEHLLAAVADEDVFVI 125 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + + N+G + R+A AF ++ + + + GA+ P+ + D Sbjct: 126 ASGIGNHDNMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAVLRSPFTVGGSAED 185 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + M + G + + L+ + L +AL++G+EG GL P+ + M Sbjct: 186 LVAAMQTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGL-PRVVIDRCRAVGVPMA 244 Query: 258 GIIKALNVSNAAAVALY 274 G +LNV+ +A+AL+ Sbjct: 245 GGFDSLNVAVTSALALH 261 >gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89] gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli UTI89] gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 370 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G E++ I Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGD 281 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 341 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368 >gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 32/247 (12%) Query: 40 SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 SR + LFL GVH + AL + K + +D D +P + V VP Sbjct: 20 SRKGREKTGLFLVEGVHLIEEALK-------AFIHMKELV--IDVDKEIPVEWKVSNVPQ 70 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILR 152 + V KE ET + N + + LD + DP N+GAI+R Sbjct: 71 VFVTNKVMKEICET----ETPQGFVAICELPDNKNVPLERGKFLFLDGLQDPGNVGAIIR 126 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGF 207 +A A +G++ + + + ++ G++ H+P R+ +L +A+Q + +G Sbjct: 127 TADAAGINGVVLGEGTVDPFNGKVIRATQGSIFHLPVQRM-DLKEAVQICKEKNIPVFGT 185 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ +P D ALI+G EG G+ E ++ + G ++LNVS Sbjct: 186 SLQGSTYNAIQP------QDNFALIVGNEGSGVEDTLLEMTDQNLYIPIHGKAESLNVSI 239 Query: 268 AAAVALY 274 A + LY Sbjct: 240 ATGILLY 246 >gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88] gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88] gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034] gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146] gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 110-3] gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252] gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263] Length = 345 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G E++ I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710b] Length = 281 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 9/260 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + E L G H SA L+ + ++ T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDG 76 Query: 77 ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQL 134 ALA + + P + V P + + GL L A P +P L A R + Sbjct: 77 ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGT 133 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V D N+G+ILRSA A + + + + S+ + +SA GA H + I Sbjct: 134 SVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHE 190 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 DA + S + + +A + G EG G+ + +E AT + Sbjct: 191 DVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTI 250 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 251 PQPGGMESLNVAAAAAVCLF 270 >gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 415 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L ++D V DP N+G + R+++ F+ G+I + + + + +SG +P+ Sbjct: 263 VLTLVDAVQDPGNLGTLFRTSLGFNSSGMILGRGTVSPFNPKVVRGSSGTFLRVPFEFDV 322 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 +L D + + S G+ I +K+ L +EI K K+A ++G EG G P E A Sbjct: 323 DLVDQINFLRSKGYTIIATDLHAKQSL-REIPAHKLRKMAFLVGNEGAGTNPYFIELADE 381 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A + Y Sbjct: 382 TVKIPMSSELESLNVAVAHGILSY 405 >gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] Length = 237 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 16/162 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191 ++VL+ + DP N+G++ R+A+A D I+ P VL +++SGA+ H+P++R Sbjct: 73 FVLVLERIQDPGNMGSLFRTALAAGVDAILLAGGAHPLSQKVL-RASSGAVFHLPFLRFD 131 Query: 192 ------ISNLTDALQKMHSWGFQTI------GLSSDSKKPLEQEIKNDKIALILGAEGKG 239 +++L +L ++ + GF+ S S KP + ALILG EG+G Sbjct: 132 GTEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTKSTALILGNEGQG 191 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + K QE + ++++LNV+ AV L + + A Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232 >gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A] gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A] Length = 260 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 3/181 (1%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +TV P+ + I V+ + TA L P A + +L ++L+ + DP N+G I+R+ Sbjct: 74 ETVSPEVLKSIT--TTVNPDGVIVTA-LSRPFDKAKTDIKLGLILERLQDPGNLGTIIRT 130 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AVA + DGI + +++ + ++++GA P + SNL D + + G + Sbjct: 131 AVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQGVNVVATL 190 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++KK ++LG EG GL + A + + I++LNV+ A+ L Sbjct: 191 PNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNVAVTGALIL 250 Query: 274 Y 274 Y Sbjct: 251 Y 251 >gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84] gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84] Length = 276 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 12/255 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 RD ++ ++SR ++ + L G H +A + + K+ LL A + Sbjct: 19 EFRDIRERDLTGRESRFIAEGTVVLRLLAGAH--AAGGDFVAEKV--LLLRNRAAGLEEI 74 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPL-LSPTLDAVRNSQLLMVLD 139 P P+ +D IVG +H+G L TA + L + L++V Sbjct: 75 ITAFPPDVPIYVADGSVLDGIVGFH-LHRGVLALGRRTADTGMDAFLGRLPKRPLVLVGC 133 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +++ NIG++ R+A AF D ++ + + + G++ +PY R D L Sbjct: 134 GISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPYRREFRDVDLL 193 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + GF LS K + D IAL++G EG+GL + T S+ PG Sbjct: 194 TALAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGEGLPQEILSTFGSVRIPQAPG- 252 Query: 260 IKALNVSNAAAVALY 274 + +LNV+ A+ +AL+ Sbjct: 253 LDSLNVATASGIALF 267 >gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 21/256 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---- 83 +D KK++ + + + + G H + AL I Q+ +N LA+L Sbjct: 7 KDNKKVKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGHSIKQIFVEENKLAKLTAMIGS 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + +L V V + + E+ QGL E A ++ +D + LL L++V D Sbjct: 66 EKSLT-DLSVNLVSKDVLKSLADSES-PQGLIAEVA-IIEEVIDFSASKFLL--LENVQD 120 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198 P N+G ++R+A A +I T YSP + +S G+ H+ R++ A Sbjct: 121 PGNVGTMIRTADAAGFSAVILLGETADLYSPK----VMRSMQGSNFHLAIARMNEEECFA 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 K T LS++S + ++ AL++G EG G+ E+A + H+ MPG Sbjct: 177 ALKQAKISILTTTLSANSVSY--KTVEESSFALVMGNEGAGVSDFAVESADKLVHIDMPG 234 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ AA + ++ Sbjct: 235 QAESLNVAVAAGILMF 250 >gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] Length = 254 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 5/147 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + + ++ + V+DPHN A+LRSA AF + + R ++++AKSA ++ + Sbjct: 54 RTNHITILTEGVDDPHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSIIAKSADRWVDVVE 113 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + I DAL++ G+Q + S+ PLE+ + L+ G E G+ Sbjct: 114 HGSIEEAIDALKES---GYQVYATALSEEAIPLEEVDVSKPTVLLFGNEHSGVSETALHK 170 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++LN+S AAA++LY Sbjct: 171 ADGNFVIPMQGYVQSLNISVAAAISLY 197 >gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1] Length = 269 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 12/151 (7%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRI 192 VL+ V + NIGA+ RSA A D ++ T PS S L + + G + +P+ + Sbjct: 122 VLEDVMNQTNIGAVFRSAAALGFDAVLLT----PSSSDPLFRRSVRVSMGTVFQLPWTYL 177 Query: 193 SNLT-DALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETA 248 N + D + ++ + GF T + L D+ K + + + D++A++LG EG+GL+ +T ++ Sbjct: 178 ENGSPDYIGELRNAGFVTAAMALRRDTIKINDPRLASVDRLAVLLGTEGEGLKDETIDSC 237 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M + +LNV+ A+AVA + H Sbjct: 238 DYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268 >gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH 391-98] Length = 254 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 114/254 (44%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW + Sbjct: 13 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--ADIVTELIVSDQTDLPKDWIVSD 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ A + ++ ++LD + DP N+ Sbjct: 67 VEMYIV----PEPIVKVLRETETTQGVF---AVCEKQEKEVELSNGKFLLLDGLQDPGNL 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + + ++ + +S G++ H+P ++ NL + + K+ + Sbjct: 120 GTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWIDKLKTHNV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ P + ALI+G EG G+ ++ + G ++LNV+ Sbjct: 179 PVYGTALENGVPYGEITPTGSFALIVGNEGNGVHQDILAKCDQNLYIPIYGGAESLNVAV 238 Query: 268 AAAVALYITQNHFA 281 AA + Y Q+ A Sbjct: 239 AAGILTYYLQSPVA 252 >gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVRAISGE 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L G+ + SS PL K+ L+LG E GL T Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKMVLVLGQERDGLSDSTFRQGDLSVS 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 317 ISGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella clarridgeiae 73] gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella clarridgeiae 73] Length = 271 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 10/194 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ VP + +D I G VH+G+ + P L L + L+ VL +++ N+ Sbjct: 78 PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKEFLQNLPEKALIPVLCGISNHDNM 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A AF+ GII K + ++GA ++PY + ++ + + + F Sbjct: 137 GAIFRNAAAFASTGIIVDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIITALSNADF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LS + + L+ ALI G EG GL + + ++ + M ++NV+ Sbjct: 197 HLYALSPSAPRYLKDTKAIKHTALIFGTEGNGLPAHVLQKSETL-RIPMAYGFDSINVAT 255 Query: 268 AAAVALYITQNHFA 281 A+ +AL HFA Sbjct: 256 ASGLAL----AHFA 265 >gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/281 (22%), Positives = 123/281 (43%), Gaps = 41/281 (14%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSA 59 N+I+ ++++I KL+++ R+ +K + F + T PE +LY V+ S Sbjct: 4 NMITTTQNKQI-----KQIIKLKKSARERRKQELFLVEGIRMFTEIPEE-YLYKVYA-SE 56 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 N R IF+ + V+ V PQ + +I LAL Sbjct: 57 DFYNEHRVIFEHM-------------------DVELVSPQVMKEISDTMTPQGVLAL--V 95 Query: 120 PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSES 173 ++ +L+ + + L +VL+++ DP N+G ILR+ +G+I T Y+P Sbjct: 96 KMMKYSLEDLLEQEKPLFLVLENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPK-- 153 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +S G++ +P++ + +L + + M T + +++ + A + Sbjct: 154 --VTRSTMGSIFRVPFVYVDDLLEVAETMKQKNIITYAAHLNGTDYTKEDYQKG-TAFFI 210 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G EG GL K + + M G +++LN + A+ + +Y Sbjct: 211 GNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVY 251 >gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102] Length = 556 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 120/296 (40%), Gaps = 82/296 (27%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDA--NLP--HPFPVKTVPPQT--- 100 FLYG V AAL R++++L +N D DA NL PV VP + Sbjct: 231 FLYGRSVVKAALQQGRRQLYKLYVYGGENRRGFDDNDAIINLAKARGVPVTIVPNEDQRL 290 Query: 101 IDKI-VGKEAVHQGLALETAPL-------------------------------------- 121 +DK+ +G+ H G LET+PL Sbjct: 291 MDKMSMGRP--HNGFVLETSPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGEN 348 Query: 122 -LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P + L+++L + DP N+GA+LR+A D + T R S + + V+ KSA Sbjct: 349 TFVPKANNSATKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 408 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------------LSSD---SKKPL 220 +GA E + + + + L+ + G++T +S+D PL Sbjct: 409 AGAAEEVTIFTVDSPVEFLKGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQTSPL 468 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAV 271 +Q L+LG EG GL P+ + A L +P ++ +LNVS AA + Sbjct: 469 DQH----PCVLVLGNEGHGL-PRQVKVAADF-ELSVPRFVQGSSVDSLNVSVAAGL 518 >gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 271 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGA 183 +V N + + LD V DP N+G ILR+ A G+I +T Y PS +++ GA Sbjct: 110 SVENGKPWVALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPS----CVRASMGA 165 Query: 184 LEHIPYIRISNLTDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 L + +R S ++ W G IG S +K+ ++ L++G+E Sbjct: 166 LFDLHLVRTS-----FEQFRDWIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERL 220 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL+P E + + M G +LN++ A AV LY Sbjct: 221 GLQPYHLELCDEVVRIPMVGRSDSLNLAVATAVVLY 256 >gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp. pallidum str. Chicago] Length = 319 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 20/178 (11%) Query: 111 HQGLALETAPLLSPTLDAVRNSQL---------LMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A A + P AV +SQ+ +++LD V D HN+GAI+RSA F Sbjct: 89 HQGVA---ATIDEPRFPAVTHSQVEFWVQRREFVVLLDRVGDAHNLGAIIRSAAFFGVHS 145 Query: 162 IITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + R ++ + A G +E + +R +N + L+ M + +G S + + L Sbjct: 146 LVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCTNAQEVLE-MCAGKMTRVGASPHAFRSL 204 Query: 221 EQEIKN-----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N + + L+LG E GL + + G +++LNV+ A A+ L Sbjct: 205 TR-LSNILSPEEAVILVLGNEETGLSEHLTAHCDHLCRIAGSGQVESLNVAQAGALFL 261 >gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] Length = 249 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 4/166 (2%) Query: 112 QGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QG+A++ + ++N + L+ LD + +P N+G I+RS A DG+I K+ S Sbjct: 85 QGVAIDIIANSYKNANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVILPKKNS 144 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S ++ K+++G L +P + L + L+++ LSS +KK + + DK Sbjct: 145 AKISPLVIKASAGTLFKLPIYYCNTLDEVLKELKDTKIYL--LSSHAKKSIYDLRQEDKS 202 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +LG E G+ + + ++ M +++LNV+ A++ ++ Sbjct: 203 IFVLGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAFM 248 >gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] Length = 197 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 11/157 (7%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + + L +VLD+V HN+GAI R+A AF + ++ + K+A GA Sbjct: 38 TFKQTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGAT 97 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 E + +I + ++ AL+ + + IG+ +S+S+K + I K+ K A++LG E GL Sbjct: 98 ESVEWIYVDTVSAALETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNEVDGL- 156 Query: 242 PKTQETATSM--AHLHMP--GIIKALNVSNAAAVALY 274 E A ++ A L +P G +LNVS + ++ Sbjct: 157 ---SEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMW 190 >gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 266 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ +L+ V NDP N G ++R + A D +I +S+ ++++G++ H+P Sbjct: 116 RSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPV 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQET 247 R ++ + L+ + G Q + ++D + L E+ A + G E GL P+ E Sbjct: 176 ARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMEL 235 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LN++ AA++ L+ Sbjct: 236 ADHRVAIPIKGSAESLNLATAASICLW 262 >gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942] Length = 258 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 ++ + DP N+G I+R+A A DG+ +T P VL ++++G +P I+ T Sbjct: 114 VETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP---IAIAT 169 Query: 197 DALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D Q + SW G+Q + + L Q L+LG EG GL P A S Sbjct: 170 DLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVT 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + +++LNV+ AAA+ LY Sbjct: 230 IPQAAGVESLNVAIAAALLLY 250 >gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 255 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 12/252 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ +K+++ + R + L GVH V A + L+ ++A A + Sbjct: 7 RDNAFFKQLKRLAESGRERRKTGQTLLDGVHLVEA-YEKAFGPLENLIVAESAAAGGEIA 65 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVN 142 A L V V + + +G GL L AP+ T +D +++ LL D V Sbjct: 66 AYLEGRQAV--VLADALMRDLGLVDTPSGL-LAVAPMPQRTALVDLGKDAVLL---DGVQ 119 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+A A ++ + + S + ++ GA H + I D M Sbjct: 120 DPGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGA--HF-VLAIHEEADLAAFM 176 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + T D L + +A I GAEG G+R + ETA + MPG +++ Sbjct: 177 ADYRGTTAVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVES 236 Query: 263 LNVSNAAAVALY 274 LNV AAAV L+ Sbjct: 237 LNVGAAAAVCLF 248 >gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] Length = 266 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ +L+ V NDP N G ++R + A D +I +S+ ++++G++ H+P Sbjct: 116 RSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPV 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQET 247 R ++ + L+ + G Q + ++D + L E+ A + G E GL P+ E Sbjct: 176 ARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMEL 235 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LN++ AA++ L+ Sbjct: 236 ADHRVAIPIKGSAESLNLATAASICLW 262 >gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] Length = 279 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 72/140 (51%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VL+ DP N+G I+R+A A G+I K + + +S G++ +P+ + + Sbjct: 138 LLVLEDTADPGNLGTIMRTAEAAGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVED 197 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++++ G +K + + + A+I+G E +GL + + A + + Sbjct: 198 LKETIKELKKSGISFYATHLKGEKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLI 257 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + AAA+ +Y Sbjct: 258 PMQGKVESLNAAVAAALMMY 277 >gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 240 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GA+LRS+ F G++ + S A+ A G E +P +++ Sbjct: 92 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 151 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 152 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 211 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 212 IRGSGKVESLNVASATAV 229 >gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 227 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A GI P E L+ +++GA + Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKVHAVWPHEMRTLSHTSAGARNWVDV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 N+ DA+ ++ + G Q + + SD+ + A+ILG+E G K ++ A Sbjct: 73 ETHDNIEDAIAELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQ 161 >gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059] Length = 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 128 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 186 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + K + AL++G EG+G+ P+ A + H Sbjct: 187 ADFIRLAQSSRLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 245 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 246 ISMKGQAESLNVAVAAGILIF 266 >gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson] gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson] Length = 360 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 7/152 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPY 189 + ++ L+ V +PHN+GAI+RS F +G++ P+ ES ++A G EHI Sbjct: 211 TDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DPAVLESGAAVRTAEGGAEHIKA 267 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + L G+ + SS L Q KI L+L E GL + Sbjct: 268 INADDFLSVLDIFRQAGYTIVTTSSHKGTALAQAKLPAKIVLVLRQERDGLSDSAWQQGD 327 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + G + +LNVS A + L + QN Sbjct: 328 MSISIGGTGKVDSLNVSVATGILLADWWRQNQ 359 >gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 39 KSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96 K R E LF+ TV A + + ++ LL +L D A+LP PV Sbjct: 22 KERDLVGREGLFIAEGETVLRAFVRDALERVVSLLIDPKRRDKLEDVFASLPEDVPVHFA 81 Query: 97 PPQTIDKIVGKEAVHQG-LALETAP---LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D I G +H+G LA+ P + L + +++VL + + NIG I R Sbjct: 82 DQAVLDSIAGFH-LHRGVLAVGRKPQPVAANALLAGLPARAVVLVLCGIANHDNIGGIYR 140 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A AF D +I + + GA +P R+ D + + GF+ + L Sbjct: 141 NAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPTARLGRGEDIADLLANTGFEALAL 200 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + + L + + A++LGAEG GL P A ++ + M +LNV+ + + Sbjct: 201 SPSASEVLARLKPAPRTAVLLGAEGPGLSPDVMARARTVG-VPMAKGFDSLNVATTSGIV 259 Query: 273 LY 274 L+ Sbjct: 260 LH 261 >gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] Length = 267 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 71/142 (50%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +LL V ++P N G ++R++ A DG+I + ++++++G+L HIP R Sbjct: 118 KLLSVPVETSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARD 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +N+ D L K+ + Q + + L++ A + G E GL + + A Sbjct: 178 TNIKDVLGKLRASNLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRV 237 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 238 SIPLRGRAESLNLATAASICLY 259 >gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 303 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GA+LRS+ F G++ + S A+ A G E +P +++ Sbjct: 155 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 214 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 215 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 274 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 275 IRGSGKVESLNVASATAV 292 >gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] Length = 282 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L+ V +P N G ++R A A D ++ + + ++++G+L H+P R Sbjct: 127 SRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVAR 186 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249 N+ D L ++ S G Q + ++D + L+ E+ + A + G E GL + A Sbjct: 187 NVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKAD 246 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 247 HRVRIPIRGRAESLNLATAASICLY 271 >gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 297 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 26/259 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84 DY+ + ++R P LF+ G + AL P+R + LA LD D Sbjct: 40 DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSFLVDAKRVDQLADLDTGD 98 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A PV P +++ G VH+G+ + PL + +++ ++L+ VN Sbjct: 99 A------PVYAATPDVLERATGFH-VHRGVLASFRRKPLPD-AAGVLADARRAVILEDVN 150 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRISNLTDA 198 + N+GAI R+ A D ++ SPS + L + + G + +PY R+ +A Sbjct: 151 NHTNLGAIFRAVAALGVDAVL----LSPSCADPLYRRSVRVSMGEVFAVPYARLEPWPEA 206 Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L + + GF + ++ + P+++ + + AL+LGAEG GL + + + + Sbjct: 207 LAGVRAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGAGLTRAALDASDARVVIP 266 Query: 256 MPGIIKALNVSNAAAVALY 274 M + +LNV+ A AVA + Sbjct: 267 MRRGVDSLNVAAATAVACW 285 >gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M] gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M] Length = 279 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 12/253 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWD-AN 86 D++ + S +++ S + GV V L SR LL T L L D A Sbjct: 25 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLA--SRFSPRALLGTDRRLLELKDDLAG 82 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPH 145 + P+ V P + ++VG +++G+ + ++ P++ V ++ + VL+ VND Sbjct: 83 VGVPY--YRVSPDVMAQVVGFH-LNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHE 139 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A D +I + + + G +PY R ++ L + Sbjct: 140 NLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKER 199 Query: 206 GFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+ + L+ D++ E + + +AL++GAEG GL + + M Sbjct: 200 GFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTD 259 Query: 262 ALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 260 SLNVATAAALAFY 272 >gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] Length = 245 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ V DP N+G ++R+A A DG++ +++ + + +S G+ HIP R +++ Sbjct: 104 LLLEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSMQGSHYHIPVWR-TDI 162 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + M S + + S+ +Q L++G EG+G+ K E ++ + H+ Sbjct: 163 YAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGISTKMAEHSSQLVHI 222 Query: 255 HMPGIIKALNVSNAAAVALY 274 MPG ++LNV+ AA + ++ Sbjct: 223 SMPGQAESLNVAVAAGILIF 242 >gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] Length = 223 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++VLD V HNIGA+ R+A AF D I + L K+A GA + + Sbjct: 64 RKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAEFTVDW 123 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQE 246 N DA+ +H G+ + + + ++ K+ K A++ G E KG++ + Sbjct: 124 KYFKNTQDAVNDLHKDGYVVLAIEQCEGSTMLDDLILEKDKKYAIVFGNEVKGVQQEVVN 183 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LNVS A + L+ Sbjct: 184 SCDGCIEIPQYGTKHSLNVSVTAGIVLW 211 >gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] Length = 259 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 1/141 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD + DP N+G +LR+ VA + K S + S+ + +SA G+ + + Sbjct: 110 IVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKIYHHVD 169 Query: 195 LTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ + + G++ I + D S K L + N KIA I G EG G+ + Sbjct: 170 LIGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGNGVSSEILSLGLEKCI 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + I++LNV AA++ LY Sbjct: 230 IPINQNIESLNVGVAASICLY 250 >gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM] gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 257 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 11/145 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYI 190 +++++ + P N+GAILRS AF D +I T Y+P+ + +S+ G L + Sbjct: 112 VIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPN----VIRSSVGCLFGMNIF 167 Query: 191 RISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + N T A K H + T +S D++ +++ K K ALI G E G+ + A Sbjct: 168 QADNQSTLAFLKKHHFKVYTTFMSEDAQLIHQKDFKT-KTALIFGTEHSGISDFWKGKAE 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G I +LN+SNA AV+ Y Sbjct: 227 NIL-VPMAGTIDSLNLSNAVAVSCY 250 >gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314] gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314] Length = 272 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L+ V +P N G ++R A A D ++ + + ++++G+L H+P R Sbjct: 117 SRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVAR 176 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249 N+ D L ++ S G Q + ++D + L+ E+ + A + G E GL + A Sbjct: 177 NVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKAD 236 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 237 HRVRIPIRGRAESLNLATAASICLY 261 >gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 258 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD V DP N G+++R+A F DG++ K + E+ +++ G L ++P + Sbjct: 110 LLLLDEVGDPGNCGSMVRAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVD 169 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAH 253 L A+ ++ G Q D ++ + ++ AL++G E +G+ E A Sbjct: 170 LAAAVSELRRSGVQVFTTELDESAVSLRDFEFPERCALVIGNEARGVSAAISELADGKLF 229 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + G ++LN + AAAV L Sbjct: 230 VERFGSGESLNAAVAAAVFL 249 >gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 223 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++++V+ PHN+ AILR+A A G+ +P+ SG E Y Sbjct: 16 RQPDLTVLMENVHKPHNLSAILRTADAV---GVYEAHAVNPTGGVPTYNETSGGSEKWVY 72 Query: 190 IRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R+ ++ A+Q + GF SD +A++LGAE G+ P+ Sbjct: 73 LRVHPDIATAVQHLKERGFLVYAAHLSDEAVDYRAVDYTRPVAVLLGAEKWGVSPEAAAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS AAAV L+ Q Sbjct: 133 ADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 164 >gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193 + L+ V DP N+G I+R+A A DGI ++ + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSHFHLPIYRLATA 164 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMA 252 NL D L K LS DS Q++K K L++G EG+G+ + A + Sbjct: 165 NLID-LAKKSDLPILASTLSDDSID--YQKLKGSKNFILVMGNEGQGISSMIEAAADQLV 221 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 222 HIPMKGKAESLNVAVAAGILIF 243 >gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] Length = 278 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 27/195 (13%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL------------MVLD 139 PV P + ++ I G +H+G A + P L V S+LL +L+ Sbjct: 86 PVFVAPEEVLESITGFH-LHRG---ALAAMNRPELIGV--SELLSAARGGAGARRVAILE 139 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GA RSA A D ++ T R + + + G + +P+ RI A+ Sbjct: 140 DLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AM 198 Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSM 251 ++H GF L+ SD+ L++ + ++A++LG EG GL +T A + Sbjct: 199 DELHGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRTIAAADEV 258 Query: 252 AHLHMPGIIKALNVS 266 + M G + +LNV+ Sbjct: 259 VRIPMAGGVDSLNVA 273 >gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] Length = 252 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ I IV KE V GL P L R + L L+ V DP N+G ++R+A A Sbjct: 88 PQGIVAIVQKEEV--GL---------PDL---RQGKFLF-LEDVQDPGNVGTMIRTADAA 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSD 215 G+I + + + S +S G+ H+P R ++ + +K T LS + Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATFVEGAKKSDLPILATT-LSRE 191 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 SK E D + L++G EG+G+ E+A + H+ M G ++LNV+ AA + ++ Sbjct: 192 SKDYRELSPLEDFV-LVMGNEGQGISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249 >gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GA+LRS+ F G++ + S A+ A G E +P +++ Sbjct: 205 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 264 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 265 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 324 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 325 IRGSGKVESLNVASATAV 342 >gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 186 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +L ++++ V P N+G+I+R+ F + + +P K+A G +P+ Sbjct: 27 HGRLGLIVESVTQPFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWS 86 Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A+++ H G + I L + PL + + L +G E G P E A Sbjct: 87 QAGTPQQAVREAHDQGLRVIALELAGGAIPLHRAPLEGDVCLAVGGEDHGCSPALLEAAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++A++ G + +LNV+ A A+AL Sbjct: 147 AVAYIPQIGRVGSLNVAVATAIAL 170 >gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 257 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 36/261 (13%) Query: 22 KLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 KL+++ R+ +K + F + T PE +LY V+ S N R IF+ + Sbjct: 15 KLKKSARERRKQELFLVEGIRMFTEIPEE-YLYKVYA-SEDFYNEHRVIFEHM------- 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMV 137 V+ V PQ + +I LAL ++ +L+ + + L +V Sbjct: 66 ------------DVELVSPQVMKEISDTMTPQGVLAL--VKMMKYSLEDLLEQEKPLFLV 111 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++ DP N+G ILR+ +G+I T Y+P + +S G++ +P++ + Sbjct: 112 LENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPK----VTRSTMGSIFRVPFVYVD 167 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + + M T + +++ + A +G EG GL K + Sbjct: 168 DLLEVAETMKQKNIITYAAHLNGTDYTKEDYQKG-TAFFIGNEGNGLTDKLTDKVQKKIK 226 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A+ + +Y Sbjct: 227 IPMCGKVESLNAAMASGLLVY 247 >gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L++V DP N+G I+R+A A DG+ + + + +S G+ H+P RI + Sbjct: 105 LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRI-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S E + + L++G EG+G+ P+ A + H Sbjct: 164 ADFIRLARSSSLPILASTLSSTSIDYREV-VSKESFVLVMGNEGQGISPEMTVAADILVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 280 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 117 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 172 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + +A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 173 VAVGVPVEEAVAGLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEET 232 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E A ++ + + G ++LN++ AAAV LY Sbjct: 233 RELADAVVRVPIHGKAESLNLATAAAVCLY 262 >gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 331 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 GL E S +D V + ++ + +PHN+GAI+RS F GII + E Sbjct: 168 GLDAEAYLAQSNKIDCV------LAVEDIGNPHNLGAIMRSCAHFGVQGIILHD-TAAME 220 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIA 230 S ++A+G E+I I+ N L K G+ I +S+ K ++ + + +KI Sbjct: 221 SGSAVRTAAGGAEYIKGIQSDNFATTLNKFRHAGY-IIVTTSNHKDNIDIAKAVLPEKIV 279 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+L E GL + + G +K+LNVS AA + L Sbjct: 280 LLLEQESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGIIL 322 >gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 178 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V HNIG++ R++ AF D I + + K+A GA + + Sbjct: 25 LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+Q++H GF + + L +++ D K A+++G E KG++ + Sbjct: 85 NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + L+ N K Sbjct: 145 CVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176 >gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 296 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L+ VL HV DP N G +LR A A D +I T + +++ G+L H+P Sbjct: 137 RRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPV 196 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + + +A+ + G + + L+ E+ + A + G E GL +T+ Sbjct: 197 VTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETR 256 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 257 ALADAVVRVPLHGKAESLNLATAAAVCLY 285 >gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88] gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger] Length = 497 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 74/302 (24%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81 + P + F+YG+ AAL R+I++L K AL +L Sbjct: 179 TTPASQFVYGISACMAALRCSRRRIYKLYIYQSEGRELSPEKKALRKLALLKNVTVKMAF 238 Query: 82 -DWDANL-------PHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 W L PH P+ +P Q + EA + GL L ++ Sbjct: 239 ASWGRLLDQMSDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNFGLELGAQSREEAQVN 298 Query: 128 AVRNS-----------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 N+ ++++LD + DP N+GAI+RSA D I+ R S S V+ Sbjct: 299 TTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADAIVFAGRNSAEISPVV 358 Query: 177 AKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTI-----GLSSDSKKPLE----QEIK 225 K+++GA E + + + N D ++ K + W F G +S P E + Sbjct: 359 LKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTYIDPAEFGNGAPVA 418 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--------------IKALNVSNAAAV 271 +++G+EG GL P A ++ + +PG + +LNVS AAA+ Sbjct: 419 QAPSVIMMGSEGTGLSPHILSQADAV--IGIPGAKFSPELGAESDPARVDSLNVSVAAAL 476 Query: 272 AL 273 + Sbjct: 477 LM 478 >gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 253 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 30/266 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-VLGTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136 L DK++ +A+ Q L+ P+ P + + + Sbjct: 66 KLKD------------DKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD++ DP N+G I+R+A A DG++ ++ + + +S G+ HI I+ + + Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171 Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A+ G + + + K L ++AL++G E G + ETA ++ Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIP 231 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HF+ Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253 >gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D +I T Y+P +++ G+ H+P Sbjct: 122 KLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSHFHLP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+Q + G + + ++ L+ E+ + A I G E GL +T Sbjct: 178 VAVGVPVEQAVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEET 237 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A ++ + + G ++LN++ AAAV LY + Sbjct: 238 RALADAVVRVPIHGKAESLNLATAAAVCLYAS 269 >gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 303 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 64/138 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GA+LRS+ F G++ + S A+ A G E +P +++ Sbjct: 155 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 214 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 215 GTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 274 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 275 IRGSGKVESLNVASATAV 292 >gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 197 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V +PHN GA+LRS+ F G++ + S A+ A G E +P +++ Sbjct: 46 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAASTLGLSGAAARVAEGGAEAVPLVQLP 105 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A+ ++ GF D + + ++ ++GAE +G+ Sbjct: 106 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 165 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 166 IRGSGKVESLNVASATAV 183 >gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 245 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193 ++L+ V DP N+G I+R+A A DG+ +++ + ++ +S G+ H+ R I Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLSIWRTDIY 163 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + +Q+ ++ T +S D K QE AL++G EG+G+ + A + Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTALADQL 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ AA + ++ Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242 >gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 304 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 21/162 (12%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI--- 187 ++++ VL+ V D NIGA+ R+A D ++ + + + +S ++ H+ Sbjct: 142 GAKVVAVLEGVGDHENIGAMFRNAAGLGVDAVLFG---AATADPLYRRSVRVSMGHVLRT 198 Query: 188 PYIRISNLTD----ALQKMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALI 232 P+ R+ T +L+++ G+ I L+ ++++ L E E + +IA++ Sbjct: 199 PFARLEGKTTTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIM 258 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GAEG GL A A + M +LNV+ AAA+ Y Sbjct: 259 VGAEGPGLTEHAMRAADIRAAIPMASGTDSLNVATAAAIGFY 300 >gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 359 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSA 180 L+ LD R L+++D V +PHN+G ++R+ F G++ + + + +A A + A Sbjct: 202 LAGYLDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMRVA 261 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEG 237 G +E++ + +++ AL ++ G+Q I ++++ + KPL + +K+ +L +G Sbjct: 262 EGGMEYVRVLETTDVPKALAQLRQAGYQLIHVTANKQAKPLSKLHFTEKVVFVLNEQG 319 >gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G ++RS F G++ + + ES ++A G EH+ I Sbjct: 99 CVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 157 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252 ++ D L G+ + SS KPL +K+ L+LG E + L P+ +A + Sbjct: 158 SIVDVLDDFRHAGYTVVMTSSVKGKPLFTTTLPEKMVLVLGREREAL-PEAACSADDLCV 216 Query: 253 HLHMPGIIKALNVSNAAAVAL--YITQN 278 + G ++ LNVS A V L + QN Sbjct: 217 AIDGTGNVETLNVSVATGVLLAEWWRQN 244 >gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 287 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +++ DP N+G I+R+A A ++T + S + ++++G++ H+P I Sbjct: 108 DGGFYVIIAQGRDPGNVGTIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVI 167 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PL----EQEIKNDKIALILGAEGKGLRPKTQ 245 A+ +H+ G + +G S + PL E+ A LG E +GL Sbjct: 168 PHPAFGAAVDALHARGARVLGTSGGPRAVPLPAVEEEGALAGPHAWALGNEARGLDADEV 227 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G+ ++LNV++AAAV LY +Q Sbjct: 228 AACDLLVAIPMTGLAESLNVASAAAVCLYASQR 260 >gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] Length = 296 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 147 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 203 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 204 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVS 263 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 264 VSIGGTGKVESLNVSVATGILLAEWWRQN 292 >gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 246 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PT D + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G+ Sbjct: 97 PTYDKTQAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + HIP I D +H + G + ++ AL+LG EG+G+ P Sbjct: 156 IFHIPVI----FDDINNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ +Y Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMY 242 >gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10] gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10] Length = 586 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 85/306 (27%) Query: 46 PENLFLYGVHTVSAALN---NPSRKIFQLLATKN----------ALARL----------- 81 P + FLYG V AALN SRK+++L K A+A+L Sbjct: 252 PASEFLYGTSVVEAALNARRKRSRKLYKLYILKGEDRQNGERDGAIAKLAQKKGVEVAIV 311 Query: 82 ---DWDANL-------PHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAP----- 120 DW L PH P+ +P ++ I+ ++ A++ P Sbjct: 312 RGHDWLRTLDKMSQGRPHNGYILEVSPLPRLPLMSLGSIIDQD---DSFAIKLTPDHQSR 368 Query: 121 ----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 ++ D+ L+++LD + DP N+GAILR+A+ + + R S Sbjct: 369 EEIEVNGNDTIIKVAKDSTGRKPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSA 428 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSDSK---KPL 220 S + V+ K+++GA E+I ++ + + G++ +DS+ P Sbjct: 429 SFTPVVFKASAGAAENIEIFSVNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPT 488 Query: 221 EQE----------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALNV 265 QE +++D L++G EG+GLR ++ A HL + G + +LNV Sbjct: 489 SQEFVWTHDLQDPLRDDPCILMVGGEGEGLRKALRDHAD--VHLSIKGAGNRGRLDSLNV 546 Query: 266 SNAAAV 271 S A + Sbjct: 547 SVATGM 552 >gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 252 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 21/256 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---- 83 +D KK++ + + + + G H + AL I Q+ +N LA+L Sbjct: 7 KDNKKVKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGHSIKQIFVEENKLAKLTAMIGS 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + +L V V + + E+ QGL E A + +D + LL L++V D Sbjct: 66 EKSLT-DLSVNLVSKDVLKSLADSES-PQGLIAEVAKI-EEVIDFSASKFLL--LENVQD 120 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198 P N+G ++R+A A +I T YSP + +S G+ H+ R++ A Sbjct: 121 PGNVGTMIRTADAAGFSAVILLGETADLYSPK----VMRSMQGSNFHLAIARMNEEECFA 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 K T LS++S + ++ AL++G EG G+ E+A + H+ MPG Sbjct: 177 ALKQAKISILTTTLSANSVSY--KTVEESSFALVMGNEGAGVSDFAVESADKLVHIDMPG 234 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ AA + ++ Sbjct: 235 QAESLNVAVAAGILIF 250 >gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri NRRL 181] gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri NRRL 181] Length = 484 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/340 (22%), Positives = 136/340 (40%), Gaps = 96/340 (28%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLL 72 ++L+R + + + + QK +H P+++ F+YG V AAL + R++++L Sbjct: 133 SRLKRGEKRFTEGEP-EQKKKHVLVPDSVPYTTPASEFIYGTSAVEAALRSGRRQLYKLY 191 Query: 73 ----------ATKNALARL-------------DWD-------ANLPH--------PFPVK 94 T++ L +L WD + PH P P Sbjct: 192 IYQGDNEELGPTRSMLRKLALSKNIKVKMAYAGWDRLFDQMSSGRPHNGCILDASPLPQL 251 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVN 142 V +G + LA ++ T+++ N ++++LD + Sbjct: 252 PVKSLCATPTLGADEFRVVLAPQSKE--EATVNSTNNRIPVRHLPGKSRYPVVLLLDGIT 309 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-- 200 D N+G I+RSA D I+ R S + K+++GA E++P I++SN D +Q Sbjct: 310 DTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAENMPLIKVSNEVDFIQQS 369 Query: 201 KMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 K + W F ++D+ P + ++LG+EG GL + Sbjct: 370 KANGWHF----FAADAPLPGSRYPDTTGDIDLTRNAVTQAPSVIMLGSEGSGLSGHIKSH 425 Query: 248 ATSMAHLHMPGI--------------IKALNVSNAAAVAL 273 A S+ + +PG + +LNVS AAA+ + Sbjct: 426 ADSI--VSIPGARNATEWGYEKDSARVDSLNVSVAAAILM 463 >gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] Length = 358 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 210 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 266 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 267 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 326 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 327 VSIGGTGRVESLNVSVATGILLAEWWRQN 355 >gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78] gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78] Length = 297 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE 185 R +L+ VL HV DP N G +LR A A D +I T Y+P +++ G+L Sbjct: 138 RRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPK----CVRASVGSLF 193 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLR 241 H+P + + +A+ + G + + L+ E+ + A + G E GL Sbjct: 194 HLPVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLP 253 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 254 EETRALADAVVRVPLHGKAESLNLATAAAVCLY 286 >gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 256 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144 +LP P+ + ++ K +G QG+ TAP+ T +D + + LD+V DP Sbjct: 65 SLPTDVPIYELT-DSLAKTIGDTGTPQGI-FATAPMPDETAIDPKTATGAWLFLDYVQDP 122 Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 NIG ++R+A A G++ T R+ P + ++ G+ HI + ++L D + Sbjct: 123 GNIGTMVRTADAAGLTGVVFGKGTASRFLPK----VLRAMQGSQFHIQLVE-ADLHDWIG 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + D P Q+ ++ A+++G EG G+ P Q T ++ + Sbjct: 178 AFTARQLPVYGTNLD---PQAQDYRDVPALTNGAIVMGNEGNGMAPDLQRLTTQNLYIPI 234 Query: 257 PGIIKALNVSNAAAVALY 274 G ++LNV+ AA V ++ Sbjct: 235 KGQAESLNVAVAAGVVMF 252 >gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 256 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 39/285 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+EKI L AK R+ Y L G H V A Sbjct: 1 MESISSPKNEKIKELVKLQTAKGRKKAGMY-------------------LLEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + ++ I ++ T N RL+ NL V+ + +V ++ H+ ETA Sbjct: 42 IKERAQ-IKLIVVTSN---RLEDYKNLLAQTDVQVL-------VVSQDVFHKLSMTETAQ 90 Query: 121 LLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + ++ V+ L +VLD V DP N+G I+R+A A D ++ + Sbjct: 91 GILAVVEIVKQEILPHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDK 150 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALIL 233 + +S G+ HIP + +NL + L + G Q L DSK + D +A+++ Sbjct: 151 VLRSMQGSHFHIPVFQ-ANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATD-VAIVV 208 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G EG+G+ + A + + + G ++LNVS A+A+ +Y T+ Sbjct: 209 GNEGQGVSDDVIDLADVVVTIPIFGKAESLNVSIASALLMYKTKE 253 >gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 267 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSA 180 TL V +S LL+V + P NIGA+LR+A A + D +I T Y+P+ + +S+ Sbjct: 109 TLAFVTDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPN----IIRSS 164 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G + +P I + T+ + + + G + + + KP + + A+++G E +GL Sbjct: 165 VGCVFTVP-IATGSTTEVIDFLKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGL 223 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +T + M G+I ++NVS AAAV ++ Sbjct: 224 TEEWLTHSTQNIIIPMEGVIDSMNVSVAAAVLIF 257 >gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] Length = 268 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R ++ ++V+D V D NIGAI RSA A D ++ T+ + + + + GA+ Sbjct: 114 EVCREARRIVVIDSVVDATNIGAIFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFF 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243 +P+ + + +L + GF+T ++ +D P++ + K+A+++G EG+GL Sbjct: 174 VPW---AWMNGSLSDLGKLGFRTAAMALTDDSIPIDNPALVNESKLAIVMGNEGEGLSHD 230 Query: 244 TQETATSMAHLHMPGIIKALN 264 T A + + M + +LN Sbjct: 231 TITEADYVVRIPMVHGVDSLN 251 >gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] Length = 290 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 1/147 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P A ++ LD + DP N+G ++R+A+A + + ++ P + VL SA A Sbjct: 122 PEPPACERVDFVLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAGAA 181 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L +P R+ L L+ + G Q + P Q L+LG EG GL P+ Sbjct: 182 LA-LPCRRLEQLLPRLESARTGGVQVVASVVAGGIPYWQLDWTLPTVLLLGNEGAGLAPE 240 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + G +++LNV+ AAA Sbjct: 241 LLAASSHQVTIPHSGAVESLNVAVAAA 267 >gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] Length = 364 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 216 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 272 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 273 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 332 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 333 VSIGGTGRVESLNVSVATGILLAEWWRQN 361 >gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4] gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris DP4] Length = 274 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N G + RS A G+I + + A ++A+GALE +P R++ Sbjct: 123 LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 182 Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL AL + G+ G S ++ + L+LG E KG+RP + ++ Sbjct: 183 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 241 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 H+ M + NV+ A A+ L Sbjct: 242 LHIPMLRDFDSFNVAQAGALLL 263 >gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 248 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 21/181 (11%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 TV PQ I I+ K P +S ++ + +++LD + DP N+G ++R+A Sbjct: 84 TVTPQGIFAIIEK------------PDVSKQVEVAKQ---VLLLDRIQDPGNLGTLIRTA 128 Query: 155 VAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A + D I+ + P + VL +++ G++ H+P I D + + + G + Sbjct: 129 DAAALDLIVMSPGSADPFQDKVL-RASQGSVFHLPIIS----QDIKEFVQDFDGPVYGTA 183 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + +K L+LG EG+G+ P+ E T + M G ++LNV+ A ++ + Sbjct: 184 LDNAINFNEVESQEKFGLLLGNEGQGVDPELLEYTTQRLTIPMYGEAESLNVAIAGSILI 243 Query: 274 Y 274 Y Sbjct: 244 Y 244 >gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] Length = 270 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/280 (20%), Positives = 118/280 (42%), Gaps = 26/280 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALARLD---WDA-NLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114 ++ I ++ ++ A R W+ L +K V P + + + + QG+ Sbjct: 47 IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L + ++ ++N + ++V D + DP N+G ++R A AF D ++TTK + Sbjct: 107 -LAECNFVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G+L H+ +R + ++ + F + + + + + K +++G Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +G+ + A + M G ++LN + AA+V LY Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLY 265 >gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus Af293] gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus Af293] gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus A1163] Length = 484 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD + D N+G I+RSA D I+ R S + K+++GA E++P I++S Sbjct: 301 VVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAENMPLIKVS 360 Query: 194 NLTDALQ--KMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGK 238 N D +Q K + W F ++D+ P + ++LG+EG Sbjct: 361 NEVDFIQQSKANGWRF----FAADAPLPGTRYPDTTGDIDLTRNAVTQAPSVIMLGSEGS 416 Query: 239 GLRPKTQ------------ETATSMAHLHMPGIIKALNVSNAAAVAL 273 GL + AT + P + +LNVS AAA+ + Sbjct: 417 GLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILM 463 >gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua] gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516] gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F] gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1] gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92] gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10] gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516] gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua] gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92] gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F] gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis YPIII] gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004] gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 388 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 295 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 296 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 355 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 356 VSIGGTGRVESLNVSVATGILLAEWWRQN 384 >gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14] Length = 285 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +L+ V +P N+GAI RSA A D ++ T S ++ + G + IP+ I + Sbjct: 127 IAILEDVMNPTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQD 186 Query: 195 LTD------------ALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239 + A++ + + G++T L+ +D ++ Q + +K+A+ILG EG G Sbjct: 187 DKERRCDRKDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTEGDG 246 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +T + + M + +LNV+ A+AVA + Sbjct: 247 LMQETIKACDYTVKIPMSHGVDSLNVAAASAVAFW 281 >gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] Length = 371 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 223 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 279 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 280 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 339 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 340 VSIGGTGRVESLNVSVATGILLAEWWRQN 368 >gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10] gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar Microtus str. 91001] Length = 393 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 244 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 300 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 301 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 360 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 361 VSIGGTGRVESLNVSVATGILLAEWWRQN 389 >gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7] Length = 260 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 2/152 (1%) Query: 125 TLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +LDA+ + LL+ L+++ DP N+G ++R+A GII ++ + + ++ G Sbjct: 99 SLDAIMKQPDALLLFLENIQDPGNLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMG 158 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +L +P++ + + + ++ + G + K + E ++G EG GL Sbjct: 159 SLYRMPFVYVDDFCETIRMAKAQGIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQ 218 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++AT + M G +++LN + AAAV +Y Sbjct: 219 EAADSATDYIRIPMGGQLESLNAAVAAAVLMY 250 >gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 344 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 35/177 (19%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASG 182 D N +L+ VL V DP N G ILR A A D +ITTK Y+P +S +G Sbjct: 163 DGALNPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAG 218 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA----------- 230 +L H+P I+ L D + + S G T L++D + QE+ A Sbjct: 219 SLFHVPIIQGVQLEDFAEDVKSQG--TAVLAADGYGAVNLQELSEYTAARRAGVEASAPS 276 Query: 231 -------------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E +GL + + AT + + G ++LNV AAAV LY Sbjct: 277 GVKGNFDLSKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLY 333 >gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++D ++++ L+++LD+V +NIG++ R++ AF + + + +A + K+A Sbjct: 13 SIDEFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTAL 72 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGK 238 GA + ++ + DAL+ + GF + + + E+ DK A++LG E K Sbjct: 73 GAENSVDWVYYEDTRDALRGLKDRGFTICAIEQAERSIMLDELVVDKAKGYAVVLGNEVK 132 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+R + + + G +LNVS AA + ++ Sbjct: 133 GVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIW 168 >gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] Length = 363 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 215 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 271 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 272 ADDFLSVLDTFRKAGYTIVTTSSHKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 331 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 332 VSIGGTGRVESLNVSVATGILLAEWWRQN 360 >gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP 31758] Length = 395 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 246 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 302 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 303 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 362 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 363 VSIGGTGRVESLNVSVATGILLAEWWRQN 391 >gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47] Length = 275 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEH 186 N L++VLD V P N+GA+ RSA A ++ + R++P+ + + GA+ Sbjct: 124 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNA----IRGSLGAVFT 179 Query: 187 IPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P S + +A K H G++ + + +PL K+A++LG+E GL + Sbjct: 180 VPSASGSESQMEAFLKTH--GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWA 237 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LNVS +AA+ + Sbjct: 238 GDSIDPVALPMAGHVDSLNVSVSAAIVAF 266 >gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] Length = 246 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 14/147 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-- 192 + L+ V DP N+G ++R+A A G+I + + + S +S G+ H+P R+ Sbjct: 104 FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRLPL 163 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSK-----KPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ + +K + T LS +SK PLE AL++G EG+G+ E+ Sbjct: 164 ASFVEEAKKSYLPILATT-LSRESKDYRELSPLE------NFALVMGNEGQGISSVMAES 216 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + H+ M G ++LNV+ AA + ++ Sbjct: 217 ADQLVHISMKGRAESLNVAVAAGILMF 243 >gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris str. Hildenborough] Length = 249 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N G + RS A G+I + + A ++A+GALE +P R++ Sbjct: 98 LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 157 Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL AL + G+ G S ++ + L+LG E KG+RP + ++ Sbjct: 158 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 216 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 H+ M + NV+ A A+ L Sbjct: 217 LHIPMLRDFDSFNVAQAGALLL 238 >gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 248 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 68/144 (47%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +L+ V +++P N G ++R A A D ++ + ++++G++ IP + Sbjct: 96 NPKLVAVPVGISEPGNAGTLIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVL 155 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + A+ K+ G Q + D LE + A + G E GL AT+ Sbjct: 156 SAPDAVAAVTKLKDAGLQVLATVLDGPVSLEDADLSVPTAWLFGPEAHGLPADVAGLATA 215 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV++AAA+ LY Sbjct: 216 GVRIPMPGNAESLNVASAAAICLY 239 >gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I + +A++++G+L H+P R N+ D L + Sbjct: 128 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQ 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++D + L A + G E GL +E A + + G + Sbjct: 188 LRKSGMQIVATAADGEVELADADLTQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 246 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 247 SLNLATAASICLY 259 >gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] Length = 210 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++L+HV PHN+ AILRS CD + + ++ S + +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHAVSFNGRPRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + A++ + + GF+ G L D+K E + A +LGAE GL + Sbjct: 73 VPLHDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECDFTG-PTAFVLGAEKWGLTDQA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + M G++++LNVS A A L+ Sbjct: 132 QDLMDEALFIPMRGMVQSLNVSVATATLLF 161 >gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 131 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G++ + S + V+ K ++GA+ H+P ++S+L D+L+K G + + Sbjct: 1 MGASGVVVPRERSAPINEVVVKGSAGAVFHLPIAKVSSLRDSLEKFQKLGGWILAIEKGG 60 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K P+ + +AL+LG+EGKG + A +A + M G I +LNV++A A+ ++ Sbjct: 61 K-PIHKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGAIGMW 117 >gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] Length = 270 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---- 167 QG+ E + ++ ++N + +++ D++ DP N+G ++R A AF D ++TTK Sbjct: 104 QGILAECI-FVDKDINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 Y+P + ++ G+L H+ +R + ++ + F + + + + + Sbjct: 163 YNPKTT----RATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDK 218 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++G E +G+ + AT + M G ++LN + AA++ LY Sbjct: 219 RFCIVIGNESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLY 265 >gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] Length = 180 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLDHV +N+G++ RS+ AF + + + + K+A GA + + ++ Sbjct: 29 LIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTALGAEDSVDWVYYE 88 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 DA++ + + G++ + + Q+ + D K A+ILG E KG++ + + Sbjct: 89 RTQDAVEHLKAEGYEVWAVEQVEGSVMLQDFRPDKAKKYAIILGNEVKGVQQEVVDQCDG 148 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 149 CIEIPQFGTKHSLNVSVTAGILVW 172 >gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 250 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD + +P N+G I+RS A + DGII K+ S S ++ K+++G L +P + Sbjct: 110 LIALDGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFKLPIYFCNT 169 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + L + T LSS +K + +++K +LG E +G+ + + + + Sbjct: 170 LQEVLTEQQEAKIYT--LSSYAKTTIYDIQESEKTIYVLGNENEGVSHEVAKLCNNSVSI 227 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 M +++LNV+ A++ ++T Sbjct: 228 PMNRGVESLNVAVTASLIAFMT 249 >gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] Length = 363 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 215 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 271 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 272 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMS 331 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 332 VSIGGTGRVESLNVSVATGILLSEWWRQN 360 >gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 268 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++P N G ++R++ A DG+I + +A++++G+L H+P R N+ D L + Sbjct: 128 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQ 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++D + L + A + G E GL +E A + + G + Sbjct: 188 LRKSGMQIVATAADGEVELADADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 246 Query: 262 ALNVSNAAAVALY 274 +LN++ AA++ LY Sbjct: 247 SLNLATAASICLY 259 >gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 178 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V HNIG++ R++ AF D I + + K+A GA + + Sbjct: 25 LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYSVEWRYKK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+Q++H GF + + L +++ D K A+++G E KG++ + Sbjct: 85 NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + L+ N K Sbjct: 145 CVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176 >gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] Length = 405 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 67/300 (22%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 K + T P ++YG H V AAL R F L N L F VK + Sbjct: 99 KPKMTLNPLCEYVYGTHPVIAALTAKKRDAFSKLFIHNTKEHTPKILKLAKNFGVKIIEK 158 Query: 99 QTIDK--IVGKEAVHQGLALETAPLLSPTLDAVRN---------SQLLM----------- 136 T + ++ VH G+ LET PL P + + N S LM Sbjct: 159 DTKGEMNVLSSNGVHNGVVLETKPLSFPLISTLENDFDGETGEYSVTLMNELTGDEKSFQ 218 Query: 137 ------------------VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +LD + DP N+G+I+R+A D I+ + S AK Sbjct: 219 HTVARHTPHNYKRFPFGLLLDGITDPQNVGSIIRTAYYLGVDFIVIPESESARLGPATAK 278 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------------------DSKKPL 220 +++GAL+ + + + L + G+ + SS ++K Sbjct: 279 ASAGALDLLTIYKTDDTLTFLDNVRKSGWNVVTTSSRMSEDELNSMKSKHRPALENKYIE 338 Query: 221 EQEI----KNDKIALILGAEGKGLRPKTQETATSM-----AHLHMPGIIKALNVSNAAAV 271 QE+ + ++ G+EG G+R + + + L ++ +LNV AA++ Sbjct: 339 PQELPALMNQTPMLMVFGSEGAGVRTNIKFRSDYLVGLPKGRLETDEVVDSLNVGVAASL 398 >gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] Length = 365 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 216 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAVLESGAAVRTAEGGAEHIKAIN 272 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 273 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVS 332 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A + L + QN Sbjct: 333 VSIGGTGKVESLNVSVATGILLAEWWRQN 361 >gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA1] Length = 273 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L ++ V DP N G ++R A AF D +I T+ + +S+ G++ H+P + Sbjct: 121 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQET 247 L DA++ H Q L++D L+ ++ IA ++G E GL + Sbjct: 181 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 238 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + + M G ++LN+S AAAV LY T + Sbjct: 239 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 270 >gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227] gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83] gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 345 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++ ++PHN+G ++RS F G++ + + ES ++A G E + I Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAELVQSITGD 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ + L G+ + SS+ KPL + K+ L+LG E +GL ++ Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G + LN+S A V L + QN Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343 >gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 272 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148 V Q ++K+ + V + + + +P SP LD A + L+ V++ V P N+G Sbjct: 81 VSRQVMEKLAFGDRVEEVILVAESP--SPALDTFLQDKLAAKRDLLVAVVEGVEKPGNLG 138 Query: 149 AILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 AILRSA A DG+I Y+P+ +++ GAL +P I ++ + AL + Sbjct: 139 AILRSADAAGIDGVIVCGARLDLYNPNA----IRASLGALFTLPVIGMT-VPQALAWLRM 193 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 FQ + D + A+ILG+E +GL + L M G + +LN Sbjct: 194 HQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIRAISLPMLGTVDSLN 253 Query: 265 VSNAAAVALY 274 +S AA+ Y Sbjct: 254 LSVTAAILFY 263 >gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 269 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV ++++ G +H+G LA P L D +R+++ ++VL+ + D N+GAI Sbjct: 78 PVFVGAAAVLERLTGYN-LHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVGAI 136 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+ D ++ T R + + + G + +P+ R+ ++A +H GF Sbjct: 137 FRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFHLA 196 Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGL 240 L+ D L+ + ++IAL+LG EG GL Sbjct: 197 ALALEDDAVTLDAFAADPPERIALVLGTEGDGL 229 >gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] Length = 344 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L G+ + SS PL ++ L+LG E GL + + Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPARMVLVLGQERDGLSDSSFQQGDLSVS 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 317 IGGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 321 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 5/187 (2%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150 PV P + +I G VH+G+ PT + + ++ +++L+ VN+ N+G+I Sbjct: 128 PVYAATPDVLRQITGFH-VHRGVLASFRRQRQPTAAEVLGTARRVVILEDVNNHTNLGSI 186 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+ D ++ + + + + G + +PY + DAL ++ + GF + Sbjct: 187 FRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYATLGPWPDALAEVRAAGFSVL 246 Query: 211 GLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ + P++ + + + AL+LGAEG GL + E + + M + +LNV+ Sbjct: 247 ALTPAPDAVPIQRLEPGQRARAALLLGAEGSGLTREAMEASDVRLVIPMRRSVDSLNVAA 306 Query: 268 AAAVALY 274 A AVA + Sbjct: 307 ATAVACW 313 >gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum] Length = 420 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D R +++LD + DP N+GAILRSA D + T R S V K+++GA E Sbjct: 252 DPKRRYPFVLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAGAAEL 311 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILG 234 +P + + + G+ K + + +K + L++G Sbjct: 312 LPIFEHAKSERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVVLLVG 371 Query: 235 AEGKGLRPKTQETATSMAHL-HMPG---IIKALNVSNAAAV 271 EG+GLRP ++ A L PG ++ +LNVS A A+ Sbjct: 372 NEGEGLRPPLKKLAKFCVSLVKGPGTDSLVDSLNVSVATAL 412 >gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 368 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 7/150 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 278 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVS 337 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LNVS A + L + QN Sbjct: 338 VSIGGTGKVESLNVSVATGILLSEWWRQNQ 367 >gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] Length = 281 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEH 186 N L++VLD V P N+GA+ RSA A ++ + R++P+ + + GA+ Sbjct: 130 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNA----IRGSLGAVFT 185 Query: 187 IPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P S + +A K H G++ + + +PL K+A++LG+E GL + Sbjct: 186 VPSASGSESQMEAFLKTH--GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWA 243 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LNVS +AA+ + Sbjct: 244 GDSIDPVALPMAGHVDSLNVSVSAAIVAF 272 >gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405] gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1] gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408] Length = 246 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ ++ + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ S + LSS S + K + L++G EG+G+ P+ E A + H Sbjct: 164 ADFIRLAQSSRLPILASTLSSTSIDYRNVDSK-ESFVLVMGNEGQGISPEMTEAADVLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] Length = 261 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 75/150 (50%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + + + QL +V++ + DP N+G I+R+A A D I + ++ + ++++G+ Sbjct: 103 TEEEITDFQLGLVIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSW 162 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P S+LT ++K + G I D+ + Q ++LG EG GL Sbjct: 163 FQVPIFVTSDLTTVIKKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSL 222 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + +++LNV+ A A+ LY Sbjct: 223 ISLADNLVSIPLGPGVESLNVAIATALLLY 252 >gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris RCH1] Length = 383 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N G + RS A G+I + + A ++A+GALE +P R++ Sbjct: 232 LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 291 Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL AL + G+ G S ++ + L+LG E KG+RP + ++ Sbjct: 292 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 350 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 H+ M + NV+ A A+ L Sbjct: 351 LHIPMLRDFDSFNVAQAGALLL 372 >gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 344 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHN+G I+RS F G++ S ES ++A G EH+ I Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L G+ + SS PL ++ L+LG E GL + + Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPARMVLVLGQERDGLSDSSFQRGDLSVS 316 Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNVS A V L + QN Sbjct: 317 IGGTGNVESLNVSVATGVLLAEWWRQN 343 >gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA2] gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL025PA1] gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA2] gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL036PA2] gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA2] gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL086PA1] gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL050PA1] gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL001PA1] gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL027PA1] gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL002PA2] gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL082PA1] gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL045PA1] gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA1] gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA2] gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA3] gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL053PA2] gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA1] gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL103PA1] gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL096PA2] gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL043PA2] gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL092PA1] gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA3] gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL083PA2] gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA1] gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL099PA1] gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266] Length = 273 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L ++ V DP N G ++R A AF D +I T+ + +S+ G++ H+P + Sbjct: 121 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQET 247 L DA++ H Q L++D L+ ++ IA ++G E GL + Sbjct: 181 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 238 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + + M G ++LN+S AAAV LY T + Sbjct: 239 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 270 >gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 302 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 35/219 (15%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + K+ G L P + R+++ + VL+ V +P N+GAI Sbjct: 80 IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-------------------- 190 RSA A D ++ T S + + G + +P+ Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199 Query: 191 ----RISNLTDA--------LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGA 235 R N +D + +H GF+T ++ +D ++ + N +++A++LG Sbjct: 200 KCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLGT 259 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298 >gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] Length = 271 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L ++ V DP N G ++R A AF D +I T+ + +S+ G++ H+P + Sbjct: 119 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 178 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND----KIALILGAEGKGLRPKTQET 247 L DA++ H Q L++D L+ ++ IA ++G E GL + Sbjct: 179 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 236 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + + M G ++LN+S AAAV LY T + Sbjct: 237 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 268 >gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 306 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +A S ++ VL+ V D NIG+I R+A + D ++ + + + G + Sbjct: 146 EAADTSGVIAVLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLR 205 Query: 187 IPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEG 237 +P+ R T Q+ + G++ + L+ L + ++ K+A+++GAEG Sbjct: 206 LPWARFPGTTTTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEG 265 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A A + M +LNV+ AAA+A Y Sbjct: 266 PGLTEHAMRAADVRASIPMARGTDSLNVATAAAIAFY 302 >gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 269 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV+NS L+ V N+P N G I+R A AF G++ + ++++G+L ++ Sbjct: 108 AVKNSPLIAVPVETNEPGNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNL 167 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE------IKNDKIALILGAEGKGLR 241 P R +++ + ++K+H FQ + ++D L + + A + G E GL Sbjct: 168 PVARNTSVVEVVEKLHEAEFQILATAADGDVNLHEAADPANGMLAQPTAWLFGNEAHGL- 226 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G ++LN++ AA+V LY Sbjct: 227 GDWLDLADIRVSIPMQGQAESLNLATAASVCLY 259 >gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40] gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 256 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V +P N+G I+RSA A + II ++ ++ K+++G L P +R Sbjct: 113 ILALDGVTNPQNVGMIIRSACASPINAIILPEKGCAKLDPLVIKASTGTLFRAPILRCKT 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L+ G IGL +++ L +E +LG E +GL + + Sbjct: 173 LASCLKAFAESGADIIGLDANAPHTLGEEPLTGAKVFVLGNETEGLSSDVRAICNKHVSI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M +++LNV+ A++ + Sbjct: 233 PMLNNVESLNVAVTASLIAF 252 >gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 286 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ +L+ V D NIGA+ R+A D ++ + + + G + +P+ R S Sbjct: 130 VIAILEGVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMGHVLRVPWARFS 189 Query: 194 ----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------KNDKIALILGAEGKGLR 241 N L + GFQ I ++ D++ L + + +IA+++GAEG GL Sbjct: 190 GKTTNWQHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIAIMVGAEGPGLT 249 Query: 242 PKTQETATSMAHL-HMPGIIKALNVSNAAAVALYITQ 277 A A + MPG +LNV+ AAA+ Y ++ Sbjct: 250 EHAMRAADMRAKIPMMPG-TDSLNVATAAAIGFYASR 285 >gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 284 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV ++++ G +H+G LA P L D +R+++ ++VL+ + D N+GA Sbjct: 92 VPVFVGAAAVLERLTGYN-LHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVGA 150 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+ D ++ T R + + + G + +P+ R+ ++A +H GF Sbjct: 151 IFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFHL 210 Query: 210 IGLS-SDSKKPLEQEIKN--DKIALILGAEGKGL 240 L+ D L+ + ++IAL+LG EG GL Sbjct: 211 AALALEDDAVTLDAFAADAPERIALVLGTEGDGL 244 >gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] Length = 227 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D R+++ ++V+D V D NIGAI RSA A D ++ T+ + + + G++ Sbjct: 74 DTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFL 133 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243 +P+ + L L + GF+T + L+ DS + + ++ ++A+++G EG+GL P Sbjct: 134 VPW---TWLDGTLSDLARHGFRTAAMALTDDSISIADPVLASEPRLAIVMGTEGEGLPPD 190 Query: 244 TQETATSMAHLHMPGIIKALN 264 T A + + M + +LN Sbjct: 191 TIAAADYVVRIPMAHGVDSLN 211 >gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis IP 32953] Length = 390 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 241 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 297 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 298 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 357 Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQN 278 + G +++LNVS A + A + QN Sbjct: 358 VSIGGTGRVESLNVSVATGILLAEWWRQN 386 >gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] Length = 270 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 RN ++++LD + DP N+G I+R+AVA +GII K + + +++ GA+ IP Sbjct: 114 RNRGIILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPI 173 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + LQK+ ++ I ++ K + + + L++G E +G+R + Sbjct: 174 LTGVSFK-RLQKIRDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSL 232 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G I +LN + + A+ LY Sbjct: 233 ADIKIKIPLMGNIDSLNAAVSTAIVLY 259 >gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 64/138 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L V +PHN GAILRS+ F G++ + S A+ A G E +P +++ Sbjct: 154 LALWLCGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + AL ++ GF D + + ++ ++GAE +G+ Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 273 Query: 254 LHMPGIIKALNVSNAAAV 271 + G +++LNV++A AV Sbjct: 274 IRGSGKVESLNVASATAV 291 >gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 269 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGA 183 A+R +L+V + P NIGA+LR+A A + +G+I T Y+P+ + +++ G Sbjct: 112 ALRERSILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPN----IIRASVGC 167 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 + +P I + + T+ + + F + + KP E A+++G E +GL Sbjct: 168 VFTVP-IAVGSTTEVIDYLKKKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTEDEGLTQ 226 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +T + M G+I ++NVS AAAV ++ Sbjct: 227 EWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIF 258 >gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] [Yersinia enterocolitica subsp. palearctica Y11] gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 368 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 7/150 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 278 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMS 337 Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LNVS A + L + QN Sbjct: 338 VSIGGTGKVESLNVSVATGILLSEWWRQNR 367 >gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] Length = 235 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ + P+ A+ + L+VL ++D NIGAI+R+A A GI+ + R + Sbjct: 61 HQGVFAKIKPIEQTPFKALLDFSSLVVLCGMSDIGNIGAIVRTAYALGIGGIVISDRDTL 120 Query: 171 SESAV--LAKSASGALEHIPY-IRISNLTDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKN 226 + A+ + +S+SGAL ++P+ S+L+ A + KM F IG ++K LE Sbjct: 121 NTQALEGIFRSSSGALLNMPFSFHKSSLSVANEAKMKQ--FTLIGAGKNNKNILEST--P 176 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K A+ +G E GL K H+ M +LN S AA + + Sbjct: 177 NKWAIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI 223 >gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola] gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola] Length = 388 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 295 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 296 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 355 Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQN 278 + G +++LNVS A + A + QN Sbjct: 356 VSIGGTGRVESLNVSVATGILLAEWWRQN 384 >gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974M2] Length = 135 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQ 200 DP N+G I+R+A A G+I + + + S +S G+ H+P R+++ L D + Sbjct: 1 DPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETK 60 Query: 201 KMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 K+ T LS DS E I+N L++G EG+G+ P E+A + H+ M G Sbjct: 61 KVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQ 117 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ AA + ++ Sbjct: 118 AESLNVAVAAGILIF 132 >gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 289 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ VL HV DP N G +LR+A A CD ++ T + ++++G+L H+P + + Sbjct: 118 LVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHVPVVAGT 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETAT 249 + + G + + L+ + + A + G E GL + Sbjct: 178 RFETLIGALRECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEEILRAVD 237 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN++ AAAV LY Sbjct: 238 HVVRVPIYGRAESLNLATAAAVCLY 262 >gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma] Length = 119 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 61/112 (54%) Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +K++ ++ +AK + GALE+ ++NL + K+ +G S+S + Q Sbjct: 2 SKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIP 61 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 KN +A+I+G EG G+R ++ + + M G I +LNVS AAA+ +Y T Sbjct: 62 KNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIYST 113 >gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 306 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +A S ++ VL+ V D NIG+I R+A + D ++ + + + G + Sbjct: 146 EAADTSGVIAVLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLR 205 Query: 187 IPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEG 237 +P+ R T Q+ + G++ + L+ L + ++ K+A+++GAEG Sbjct: 206 LPWARFPGTTTTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEG 265 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A A + M +LNV+ AAA+A Y Sbjct: 266 PGLTEHAMRAADVRASIPMARGTDSLNVATAAAIAFY 302 >gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] Length = 229 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186 R + L ++L+HV PHN+ AILRS CD + + ++ L +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILRS-----CDAVGVLEAHAVCLKGRLPTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P R + ALQ + GF+ G LS+++ + A +LGAE GL P+ Sbjct: 73 VPLHRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCDF-TGPTAFVLGAEKWGLSPEC 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS A A L+ Sbjct: 132 AGLVDQAIVIPMSGMVQSLNVSVATATLLF 161 >gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14] gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium HF0070_30L02] Length = 254 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRI 192 +++VL + DP N+G ++R+A A + D ++ P AV ++++G++ +P ++ Sbjct: 112 VVLVLAGIGDPGNLGTLVRAADAVAADAVVVVGGADPWGPKAV--RASAGSMLRVPIVQY 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L D + + G +G +P +Q + + +A+++G+E GL A A Sbjct: 170 DQLDDTVDALREAGVTVVGTDVTGGEPFDQGVLDRPVAIVMGSEPHGLDRGVDLDA--WA 227 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 H+ MPG ++LNV+ A + LY Sbjct: 228 HIAMPGRTESLNVAMAGTLLLY 249 >gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] Length = 261 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 4/144 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+ ++ L++V+DP N G I+R+A AF + I+T S VL ++ GA+ I Sbjct: 116 SKNIICLENVSDPGNFGTIIRTANAFGINDILTINCVDKYNSKVL-RATMGAIFRTNIID 174 Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + ++++ S G++ I + S + K LE+ + K +++G E G+ + + + + Sbjct: 175 CK--IEKIKELQSGGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANGISAEMLKISNN 232 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M +++LNVS AAA+ +Y Sbjct: 233 HLKIDMDNSMESLNVSIAAAIIMY 256 >gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] Length = 265 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + +L+ + DW + Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVAVELIVSDQTDLPKDWTVSD 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I K++ + QG+ +D LL LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKVLRETETTQGV-FAVCEKHEKEVDLTDGKFLL--LDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A ++ + ++ + +S G++ H+P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ + ALI+G EG G+R + ++ + G ++LNV+ Sbjct: 190 PVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCDQNLYIPIYGGAESLNVAV 249 Query: 268 AAAVALYITQNHFA 281 AA + Y Q+ A Sbjct: 250 AAGILTYYLQSPVA 263 >gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 277 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 112 QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL + P +AVR ++L+ VL HV DP N G +LR+A A D ++ T Sbjct: 93 QGLVAVCRFVHVPLEEAVRPGARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVD 152 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++++G+L H+P + + +++ G + + + + L++ + A Sbjct: 153 PYNGKCVRASAGSLFHLPVSINARFPETVRQAREAGLRILAADASGARTLDEVDLSRPTA 212 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E GL P+ E A + + + G ++LN++ AAAV LY Sbjct: 213 WVFGNEAWGLPPELLELADEVVRVPIYGRAESLNLATAAAVCLY 256 >gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 235 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 6/212 (2%) Query: 67 KIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSP 124 +I +L +N LA L A+LP PV +D IVG +H+G LAL P S Sbjct: 18 RIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFP-IHRGILALGRRPERSA 76 Query: 125 T--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L + + L++ L + + NIG I R+A AF +I + + G Sbjct: 77 AGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVG 136 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A +P+ R+ D + + G + + LS + L ++A + GAEG GL P Sbjct: 137 AALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPPARVAALFGAEGPGL-P 195 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T + M G +LNV+ + + L+ Sbjct: 196 DDVLARTRTVRIPMAGGFDSLNVATTSGIVLH 227 >gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681] gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681] Length = 262 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 20/184 (10%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 T PQ++ IV KE AL P DA L+MVLD V DP N+G I+RSA Sbjct: 88 TKTPQSVFAIVRKEERSVFSALLEQP------DA-----LVMVLDGVQDPGNVGTIIRSA 136 Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 A G+I Y+P +S G+L H+P I +L + L + S G + I Sbjct: 137 DAAGAAGVILGHGCADLYNPKT----IRSTMGSLFHLPVIE-GSLEEFLPQAKSKGARLI 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S D+ L++G EG+G+ T + M G ++LN + A+ Sbjct: 192 STSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQAESLNAAMAST 251 Query: 271 VALY 274 V L+ Sbjct: 252 VLLF 255 >gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A] gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A] Length = 268 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P+L + R+++ ++V+D V D NIGAI Sbjct: 79 PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L + ++ +GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNCRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D ++ I ++A+++G EG GL KT A + + M + +LN Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251 >gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 38/236 (16%) Query: 42 HTSQPE--NLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP 98 + SQ E LF+ +S+++ + +++++Q+ L AL+ TV P Sbjct: 42 YQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKVAEALS--------------GTVTP 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 Q I+ K PT D Q+L++ D + DP N+G ++R+A A Sbjct: 88 QGFFAIIKK----------------PTYDKTLAKQVLLI-DRIQDPGNLGTLIRTADAAG 130 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ K + + +++ G++ HIP I D +H + G + ++ Sbjct: 131 LDLIVMEKGTADPFQDKVIRASQGSIFHIPVI----FDDINNYIHQFNGPVYGTALENAV 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG EG+G+ P + T + + G ++LNV+ A ++ +Y Sbjct: 187 SFNDIEAQANFALILGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242 >gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4] gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4] Length = 260 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +P L + +++L+ + DP N+G++LRSA A + ++ + + S + G Sbjct: 103 TPQLPLPETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQG 162 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A +P + S+L L ++ +T+ + EQ+++ +A ++G EG GL Sbjct: 163 AQFVLPVVERSDL---LALTGNFPGETLATVMQGESLYEQDLRQ-PVAFLIGNEGAGLSL 218 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K Q A+ H+ M G +++LN + A ++ ++ Sbjct: 219 KLQAAASRKIHIPMQGQVESLNAAAATSICVF 250 >gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15] gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15] Length = 616 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 24/157 (15%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD + DP N+G ILR+A ++ ++R S + + V K+A+GA E +P Sbjct: 435 LVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGASETLPLFACD 494 Query: 194 NLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKN---------DKIALILGAEGKGL-- 240 N L K W S S+K EQ++ + D L++G+EG+GL Sbjct: 495 NPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLVVGSEGEGLPT 554 Query: 241 --RPKTQETAT----SMAHLHMPGIIKALNVSNAAAV 271 + K+ T S AH I +LNVS AA + Sbjct: 555 MIKTKSHHAVTIPNSSGAH-----TIDSLNVSVAAGL 586 >gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei DM98] gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 14] gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 9] gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei B7210] gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 7894] gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei NCTC 13177] gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei BCC215] gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344] gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1] gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229] gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668] gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106a] gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247] gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] Length = 262 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + E L G H SA L+ + ++ T ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142 + P + V P + + GL L A P +P L A R + +VLD V Sbjct: 66 GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +SA GA H + I DA + Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + +A + G EG G+ + +E AT + PG +++ Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALY 274 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLF 251 >gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087] Length = 269 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 128 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 186 Query: 196 TDALQKMHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 D ++ S T+ L+S + ++ + + L++G EG+G+ P+ A + Sbjct: 187 ADFIRLAQSSSLPILASTLSLTSIDYREVDSK---ESFVLVMGNEGQGISPEMTAAADIL 243 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 244 VHISMKGQAESLNVAVAAGILIF 266 >gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L+VL+++ DP N+G I+R+A GII + + + +S G+L +P++ Sbjct: 96 MLVVLENIQDPGNLGTIIRTAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSE 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ A+ + + + + +E +A+++G EG GL + + A Sbjct: 156 DVVAAIHSLKQQNIKVFAAHLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIK 215 Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHF 280 + M G +++LN + + AV LY + Q H Sbjct: 216 IPMEGKLESLNAAVSTAVILYEAMRQRHI 244 >gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038] Length = 213 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 64 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 120 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L G+ + SS L + K+ L+LG E GL + Sbjct: 121 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 180 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + G +++LNVS A + L Sbjct: 181 VSIGGTGRVESLNVSVATGILL 202 >gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] Length = 286 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A G+ + + + +S G+ H+P R+S Sbjct: 145 LFLEDVQDPGNVGTIIRTADAAGYQGVFISSHSADIYNLKTLRSMQGSHFHLPIYRVSR- 203 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L Q + + S+ ++ K++ L++G EG+G+ + E A + H+ Sbjct: 204 EDMLALARQSDLQILASTLSEYSVDYQKVEKHEDFLLVMGNEGQGISQEMTEVADVLVHI 263 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 264 SMKGQAESLNVAVAAGILMF 283 >gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1] Length = 214 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 10/191 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ T + I I G V L L + R + + VL++V +P N+GAI Sbjct: 20 IPLYTGEEEEITAITGFRLVRGALCAMRRRELPSAEELCRGKKRIAVLENVVNPTNMGAI 79 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWG 206 RSA A + +I T + ++ + G + +P+ R D L H G Sbjct: 80 FRSAAALGMEAVILTSDCTDPLYRRSSRVSMGTVFQVPWTIMKCRNEEYPDIL---HGLG 136 Query: 207 FQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 ++ ++ D+ ++ + N +K+A+I+G EG+GL T + + M + +L Sbjct: 137 YKMAAMALKDNSVDIDDDRLNSEEKLAVIMGTEGEGLADHTIDACDYTVKIPMYNGVDSL 196 Query: 264 NVSNAAAVALY 274 NV+ A+AVA + Sbjct: 197 NVAAASAVAFW 207 >gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] Length = 262 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + E L G H SA L+ + ++ T ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142 + P + V P + + GL L A P +P L A R + +VLD V Sbjct: 66 GIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +SA GA H + I DA + Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + +A + G EG G+ + +E AT + PG +++ Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALY 274 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLF 251 >gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 246 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 81/147 (55%), Gaps = 6/147 (4%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187 + +Q ++++D V DP N+G ++R+A A D +I K + P + VL +++ G++ H+ Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + I +L + + + + G + ++ ++ +D AL+LG EG+G+ P+ Sbjct: 160 P-VMIQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + G ++LNV+ A ++ LY Sbjct: 216 TTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R] gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R] Length = 271 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V +P N G ++R + A D ++ A +S++G+L HIP R Sbjct: 118 RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 +N+ D L ++ S G Q + S+D + L+ E+ A + G E GL A Sbjct: 178 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 237 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 238 RVRIPIRGRAESLNLATAASICLY 261 >gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2] gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2] Length = 262 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 107/262 (40%), Gaps = 51/262 (19%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------- 91 + +H ++ + G+H V AL + A ++A D D +P Sbjct: 19 EKKHRTRQHKYIVEGIHLVQEALRSN--------AAVESVA-YDLDKGIPAELNGLDSAD 69 Query: 92 -PVKTVP--------------PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 PV+ +P PQ++ IV KE AL P DA L+M Sbjct: 70 QPVEWIPVSAAVIAKCTDTKTPQSVFAIVRKEERSAFAALLEQP------DA-----LVM 118 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRI 192 VLD V DP N+G I+RSA A G+I Y+P +S G+L H+P I Sbjct: 119 VLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKT----IRSTMGSLFHLPVIE- 173 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L + L + S G + + S D+ L++G EG+G+ T Sbjct: 174 GSLEELLPQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESV 233 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LN + A+ V L+ Sbjct: 234 FIPMQGQAESLNAAMASTVLLF 255 >gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 241 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 31/251 (12%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH 89 K +QS ++K Q NLFL + + L N + K+ ++L+T L R D Sbjct: 8 KVLQSLDKKKFR--QKYNLFLVEGNKIICELFNSNFKVKEILSTDPQKLDRTD------- 58 Query: 90 PFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV + + KI K++V E L + + +VLD + DP Sbjct: 59 -IPVTHISENELKKISFLKTPKDSVAVCYLAEEKKL--------EDKNIQLVLDGIQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F + +I ++ + + ++ G+ + + ++L + L K + Sbjct: 110 NLGTIIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVNVVY-TDLVEYLSKTENV 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ---ETATSMAHLHMPGIIKA 262 IG + + E K +KI LILG EG G+RP+T+ + + S+ ++ Sbjct: 169 ---NIGTDMEGENIYTFE-KPEKINLILGNEGNGMRPETEKLLQKSISIPRFGKSQSTES 224 Query: 263 LNVSNAAAVAL 273 LNVS AA + L Sbjct: 225 LNVSMAAGIIL 235 >gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 269 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ +++ ++ + + GV V L +P R + +L LA LD LP Sbjct: 18 DFRDLKAGDRPPGTERGTGPVIVEGVPAVERLLTSPYR-VRAVLGVPGRLAALD----LP 72 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPT-LDAVRNS------QLLMVL 138 + VP DK V E + L L +A P LDA+ + L VL Sbjct: 73 -----EGVPAYEADKWVLSEVIGFRLTRGVLASADRRPPADLDALLTGPDPAAPRRLAVL 127 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + +ND N+G+I RSAVA DG++ R + + + G + +P+ + + Sbjct: 128 EALNDAENLGSIARSAVALGVDGLLLDPRCADPLYRRSVRVSMGHVLALPFAALPDWPGG 187 Query: 199 LQKMHSWGFQTIGLS--SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLH 255 L ++H G+ T+ L+ D+ E + + + + A++LGAEG GL P+ Q A A + Sbjct: 188 LDRLHDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARVRARIP 247 Query: 256 M 256 M Sbjct: 248 M 248 >gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 270 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 112 QGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QG+ + TA L L D ++ +VLD + DP N+G ++R+A A DG++ + Sbjct: 100 QGVFV-TAKRLDKALSADGLKAGGKYLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCV 158 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +SA G++ + + + + G +T D ++Q Sbjct: 159 DLYNPKTVRSAVGSMPRVDIFVEKDFEAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGC 218 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+++G EG+GL + E + + M G I +LN + AA + L+ Sbjct: 219 AVVIGNEGRGLSQEHVEMCSDRVTIKMYGHIDSLNAATAATIFLW 263 >gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] Length = 246 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 23/184 (12%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 T PQ I ++ KE V L R + L L+ V DP N+G ++R+A Sbjct: 79 TQTPQGIVAVIQKEEV--------------GLPDFRQGKYLF-LEDVQDPGNVGTMIRTA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTIG 211 A G+I + + + S +S G+ H+P R +S + +A K + Sbjct: 124 DAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSFVEEA--KKSNLPILATT 181 Query: 212 LSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 LS DSK E ++N L++G EG+G+ E+A + H+ M G ++LNV+ AA Sbjct: 182 LSRDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAG 239 Query: 271 VALY 274 + ++ Sbjct: 240 ILMF 243 >gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510] Length = 279 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 19/190 (10%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIG 148 P + V + K+ G +H G+ AP P D A R ++ L++LD V +PHN+G Sbjct: 81 PYRMVEADELAKVAGT-VLHGGVVALMAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLG 139 Query: 149 AILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 AILR+A F ++ + PSE+A + A G E + R L L+++ + Sbjct: 140 AILRTAAFFGLPRVLVSDHPGQALPSEAAY--RVAEGGFEWVALERAPALPAVLKRLRA- 196 Query: 206 GFQTIGLSSDSKKP---------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + D +P + A++LG E G+ P T ++ + Sbjct: 197 SHRLFGTALDQSRPAVDAGALTGWRGKADTKPPAVVLGNEEDGIPPATLAACEAVLTIPG 256 Query: 257 PGIIKALNVS 266 G +++LNV+ Sbjct: 257 SGHVQSLNVA 266 >gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] Length = 328 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + TAP P A+ +Q+ + L+ V DP N+G ++R+A A DG+ + + Sbjct: 156 IATAPRPQPQTVAI--TQIGLALETVQDPGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPK 213 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++++GA +P +LT+ L G Q + D+ + ++LG Sbjct: 214 VLRASAGAWFRLPMAVGGDLTEQLTIAQQQGVQIVATLPDADLTYWELDFQQPTIVVLGN 273 Query: 236 EGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALYITQNH 279 EG GL + TA + H+ +P G +++LNV+ AA+ LY Q Sbjct: 274 EGAGL--SSSLTALADQHVQIPLSGGVESLNVAICAALMLYEGQRQ 317 >gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis HKU09-01] gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis HKU09-01] Length = 246 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A + P D Q+L++ D + DP N+G ++RSA A D I+ K + + + + Sbjct: 92 AVIEKPNYDVTHAKQVLLI-DRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLR 150 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ G++ HIP + ++L +++ F T ++ S K LE + + AL+LG EG Sbjct: 151 ASQGSVFHIPVVT-ADLQGFIKQFEGPVFGTALENAVSYKNLEPQ---ETFALLLGNEGD 206 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ E T + + G ++LNV+ A ++ LY Sbjct: 207 GVNNALLEHTTKNLIIPIYGKAESLNVAIAGSILLY 242 >gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] Length = 246 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +D ++ S + LSS S E + + L++G EG+G+ P+ A + H Sbjct: 164 SDFIRLARSSSLPILASTLSSTSIDYREV-VSKESFVLVMGNEGQGISPEMTVAADILVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243 >gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 91] Length = 262 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + E L G H SA L+ + ++ T ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142 + P + V P + + GL L A P +P L A R + +VLD V Sbjct: 66 GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +SA GA H + I DA + Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + +A + G EG G+ + +E AT + PG +++ Sbjct: 180 ERLSIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALY 274 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLF 251 >gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 275 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 6/194 (3%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDH 140 A P PV + D I G +H+G LAL + AP + + S L++ Sbjct: 75 AQFPPDVPVYVAASRVFDAIAGFN-MHRGVLALGRRDAAPGRDALIAGLPQSSLVLAACG 133 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +++ N+G++ R+A AF D ++ + + G++ +P+ R + ++ Sbjct: 134 ISNHDNMGSLFRNAAAFGVDAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAREGTAAELIE 193 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ + GF GLS + + AL++G EG+GL P+T + A + + Sbjct: 194 RLQTAGFVVWGLSPRGTADINAIPPAPRTALLVGTEGEGL-PETILSQIRTARIRQRPGL 252 Query: 261 KALNVSNAAAVALY 274 +LNV+ AA +AL+ Sbjct: 253 DSLNVAMAAGIALH 266 >gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 275 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P++ L ++L DP N+G ++R A A + + + + S + +++ G+ Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239 + H+P R +L ++ + S G+ +G LS D P+ N K+A ++G E G Sbjct: 173 VFHVPTPRFQDLAAVVKALRSEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + M G ++LNV++AA + L+++ Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269 >gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM 16994] gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM 16994] Length = 250 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD +N+P N+G I+RSA A DGI+ +R S S ++ K+++G L IP + Sbjct: 112 LLALDGINNPQNLGMIVRSAAASKIDGIVLPRRNSTKLSPLVMKASAGTLFKIPIYYCED 171 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L++ L + I LSS +K + + +LG E +G+ +T + Sbjct: 172 LSEILGIKDT---AIITLSSHAKDDIHTLKIPSRAIFVLGNETEGVSDAVMRASTHSVSI 228 Query: 255 HMPGIIKALNVSNAAAVALYI 275 M +++LNV+ A + ++ Sbjct: 229 PMYRGVESLNVAVTAGIVSFL 249 >gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 282 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V +P N G ++R + A D ++ A +S++G+L HIP R Sbjct: 129 RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 188 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 +N+ D L ++ S G Q + S+D + L+ E+ A + G E GL A Sbjct: 189 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 248 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 249 RVRIPIRGRAESLNLATAASICLY 272 >gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio aespoeensis Aspo-2] gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio aespoeensis Aspo-2] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 17/191 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ-----LLMVLDHVNDPH 145 P ++V + +D + HQG+A A L P L + + L++ LD V D Sbjct: 72 PYRSVSAKDLDFMY--RGNHQGVAARCAALSYVPLLTMLETAPDAPLPLIIALDQVQDTG 129 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G + R+ A G+I + A +S++GAL +P + NL AL+ ++ Sbjct: 130 NVGVLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKLPVAKAGNLAAALKDCANY 189 Query: 206 GF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + QT S E E+K + L+LG E KG+RP + + Sbjct: 190 DYTLYYAQT---GEGSLNAYEAELKTPAV-LVLGNEEKGVRPGVAKLCHHSLSIPFRREF 245 Query: 261 KALNVSNAAAV 271 +LNV+ A AV Sbjct: 246 DSLNVAQAGAV 256 >gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] Length = 255 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 24/187 (12%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILR 152 TV PQ I +V +++ +E RN + ++VLD + DP N+G I+R Sbjct: 82 TVTPQGIVAVVKQKSYSIDYIIEK-----------RNKEKSCIVVLDRLQDPGNMGTIVR 130 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + A GII +K + + + +S G++ +P+ + +L A+ + G T Sbjct: 131 TGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVDTLKDNGITTYAA 190 Query: 213 SSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ E+ N AL++G E +GL + A + + M G +++LN + Sbjct: 191 H------LKGELYNSGSLTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKVESLNAAI 244 Query: 268 AAAVALY 274 A A+ +Y Sbjct: 245 ATAILMY 251 >gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 257 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 26/168 (15%) Query: 123 SPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSE 172 SP L V+ Q + ++LD++ DP N+G ILR+ AF+ +I Y+P Sbjct: 96 SPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKT 155 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIAL 231 K++ GA+ I ++R ++ AL + F I D EI K L Sbjct: 156 ----IKASMGAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCL 211 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAVALY 274 ++G EG GL T + H H+ +IK +LNV+ AAA+ LY Sbjct: 212 MVGNEGHGL------VQTFIDHAHIKTMIKMNQTESLNVAVAAAIFLY 253 >gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] Length = 267 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L++V +PHN+G I+R+ F GI+ + + ES ++A G EH+ I Sbjct: 119 CVLALENVANPHNLGGIMRTCAHFGIRGIMAPES-AALESGAAVRTAEGGAEHVQAIDAE 177 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L G+ + SS L + KI L++G EG GL T Sbjct: 178 DFAATLDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLRQGDLSI 237 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 + G +++LNVS A + L Sbjct: 238 SIGGTGSVESLNVSVATGIML 258 >gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] Length = 227 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P+E L+ +++GA + Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADAT---GVHKVHAVWPNEMRTLSHTSAGARNWVDV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 ++ DA+ ++ S G Q + + +EI K A+ILG+E G + ++ A Sbjct: 73 ETHDSIEDAINELKSQGMQVLVTNLSETAVDFREIDYTKPTAIILGSEKTGASEQAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161 >gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353] gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72] Length = 246 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 10/144 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ ++ + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTI-----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 D ++ S + +S D +K +E ALI+G EG+G+ P+ A Sbjct: 164 ADFIRLARSSRLPILVSTLSSISIDYRKVDSKE----SFALIMGNEGQGISPEMTAAADI 219 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + H+ M G ++LNV+ AA + ++ Sbjct: 220 LVHISMKGQAESLNVAVAAGILIF 243 >gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125] gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125] Length = 251 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + +DHV DP N+G ++R+ A +I ++ ++ + +++ G++ H+P I+ Sbjct: 108 MFLCIDHVQDPGNVGTMIRTCDAAGMSAVIVSEGSVDIYNSKVVRASQGSIFHLPVIK-G 166 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + + G G + + + AL++G EG+G+ P+ + A + Sbjct: 167 DLHGWVDQFKEAGIPVFGTALEGGSTYTAIEPQARFALLVGNEGEGVEPELLDKADQNLY 226 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A + LY Sbjct: 227 IPLYGKAESLNVAVATGILLY 247 >gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 250 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 19/198 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSP-----TLDAVRNSQLLMVLDHVNDP 144 P V ++K+ G HQG+ A+ P + P T D VR + ++LD V + Sbjct: 53 IPYNKVETLDLEKLCGS-VHHQGVVAMIAQPEIEPLTVEITADWVRGGESAVLLDRVGNA 111 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 +N+GAI+RSA F I+ ++S+V S A + Y+R+ ++ A++ + Sbjct: 112 NNLGAIVRSAAFFGIRNIVIP--LDEAQSSVTTSSYRVAQGGMEYVRVYSVRSAVRLLQD 169 Query: 205 WGFQTIGLSSDSK--KPLEQ--EIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + +D + P+ ++ K AL +LG E G+ P +E + + +P + Sbjct: 170 MSGKMVRFGTDVRGAAPVSNMARLRAGKAALVVLGNEEAGISPLIRENCDHL--IIIPAV 227 Query: 260 ---IKALNVSNAAAVALY 274 +++LNV+ AA++ LY Sbjct: 228 NAAVESLNVAQAASIILY 245 >gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 212 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---I 192 + L+ V DP N+G ++R+A A G+I + + + S +S G+ H+P R + Sbjct: 71 LFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLV 130 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSM 251 S + +A K + LS DSK E ++N L++G EG+G+ E+A + Sbjct: 131 SFVEEA--KKSNLPILATTLSRDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQL 186 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AA + ++ Sbjct: 187 VHIGMKGRAESLNVAVAAGILMF 209 >gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 277 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N+ L+V + + P N+G ILR + A D +I + + + +++ G L +P Sbjct: 124 QNNPFLIVAEAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLFTVPV 183 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + LQ + G + + +K+ L +A+ +G E GL P+ E A Sbjct: 184 IE-SQGAETLQWLKQKGISILAATPHAKQELADIDLTGPLAIAVGTEQLGLSPQWMEQAD 242 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M GI +LNV+ A + LY Sbjct: 243 IQVRIPMYGIADSLNVAMATTILLY 267 >gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC 18224] gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC 18224] Length = 506 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 76/317 (23%), Positives = 125/317 (39%), Gaps = 89/317 (28%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLA---------------TKNALAR-------- 80 + P + F+YG+ V AAL RK++ L K ALAR Sbjct: 156 TTPASEFIYGLSAVEAALRCTRRKLYMLYIYQAAGEELSPERIALRKLALARGIHVKMAF 215 Query: 81 LDWD-------ANLPH--------PFP------VKTVPPQT-------IDKIVGKEAVHQ 112 WD PH P P +++VP T +DK +EA Sbjct: 216 AGWDRIMDKMSTGRPHNGLILEASPMPQVPVTSLQSVPSPTDEYFDVGLDKQSVEEAEVN 275 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G + A + A L+++LD + DP N+GA++RSA D ++ T R S Sbjct: 276 GSSNRIARVERFEEVAKSRYPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPL 335 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGF---------------------QT 209 + V K+++GA E++ ++ +N D +++ + W F T Sbjct: 336 TPVTIKASAGAAENMTILKANNEVDFIRRSRENGWRFYAADSPENVADLAATHGTLADDT 395 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---------- 259 ++S++ + L+LG EG GL P+ + A + +PG Sbjct: 396 TSIASNNTNQSANLLTTAPTVLMLGNEGTGLLPRIKAQADGF--VSIPGARIRPDMGIND 453 Query: 260 ---IKALNVSNAAAVAL 273 + +LNVS AAA+ + Sbjct: 454 AARVDSLNVSVAAALLM 470 >gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++LD + DP N G I+R+++A+ D I TK S S + +++ G +P Sbjct: 116 KEKSFILLLDQIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGNLCLPL 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247 I + D +K T+ +S S+K + N K+ALILG EG G+ T Sbjct: 176 IEAEDGIDYFKKFR----YTVYSASLSEKSVSYRDVNFESKVALILGNEGNGISADILNT 231 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + +++LNV AA + + Sbjct: 232 SDYQIIIPIKEGMESLNVGVAAGILI 257 >gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001] gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001] Length = 262 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 15/255 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H SA L+ R + T+ ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRPDM-CIVTEGALAHDEAQ 65 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139 A + + T+P D + G+ VH G+ L L +P D V + +VLD Sbjct: 66 AIVSRIEDHLIVTLP----DALFGQLSNVVHGVGMLLLVEKLSAPLPDTVEET--CIVLD 119 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+G+ILRSA A + + + S+ + +S GA H ++I DA Sbjct: 120 GVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVDAA 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S + +++ + ++A + G EG G+ ++ + + PG Sbjct: 177 ALIGRLAVPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPGG 236 Query: 260 IKALNVSNAAAVALY 274 +++LNV+ AAAV ++ Sbjct: 237 MESLNVAAAAAVCMF 251 >gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] Length = 261 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 16/155 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G+ILR+A F C + TT+ + S + ++ GAL ++++ + Sbjct: 112 LLLDNVQDPGNVGSILRTADWFGCRSVFTTEGTADPFSPKVVQATMGALAR---VKVTPI 168 Query: 196 TDA--LQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATS 250 TD L + H G +G + + L + + LI+G EG+G+ P + T Sbjct: 169 TDVHTLGQAHRDGVAILGTFLEGEDILAHHSTPLFSSPYLLIMGNEGQGISPTVAQYVTQ 228 Query: 251 MAHLHMPGI------IKALNVSNAAAVALYITQNH 279 L +P +++LNV+ A A+ L H Sbjct: 229 --RLTIPSSSPDGKQVESLNVAAATAIVLACLHRH 261 >gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1] gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax] Length = 314 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 55/285 (19%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPVKTVPPQT 100 ++YG+++VS+ L R I +L T+ R +D P++T + Sbjct: 32 YVYGINSVSSVLVKNERTIHSVLVNQHIRLNKKTRKQAYRYIFDTLKERGIPIRTTSKRK 91 Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D +VG H + ++T+ L + + + L V D NIG I R Sbjct: 92 MDDLVGGFP-HNDIIMQTSYRTMKRAKHFLKDYPQKGKQKSIYICLHDVYDNMNIGNICR 150 Query: 153 SAVAFSCDGIITTKRYSPS-----------ESAVLAKSASGALEHIPYIRISNLTDALQK 201 S F D I K+ ++ VL S+ G E + + ++++ + Sbjct: 151 SIFFFGGDSIFLKKKKKKKKLQEKLLQMKIDTPVL-HSSVGTSEFLDFFHVNDMLSFMDD 209 Query: 202 MHSWGFQTIG----LSSDSKKPLEQEI------KNDKIALILGAEGKGLRPK-------- 243 + S GF+ + L + S QE+ KN+K +ILG E KGL + Sbjct: 210 LKSCGFKILSTCCRLDNSSTNDRLQELANVRLSKNEKAFIILGNETKGLSKEILDRSDAC 269 Query: 244 -------TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+E +T + + + +LNV+NA A+ L+ +H A Sbjct: 270 IYISGHHTEEASTPALNSNGNFTLDSLNVNNACAILLHHFASHLA 314 >gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ L + + N+GAI R+A AF D I+ + + GA+ +P+ R Sbjct: 123 LVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVPFARGG 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + ++ + + GF + LS ++ +E + + A++LGAEG GL P Sbjct: 183 DASTLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAEGPGL-PAALLARLPSVR 241 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M +LNV+ A A+AL+ Sbjct: 242 IPMRNDFDSLNVAAATAIALH 262 >gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14] gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P++ + R ++ ++V+D V D NIGAI Sbjct: 79 PVYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G + +P+ + + +L + GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL P+T A + + M + +LN Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251 >gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 261 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/263 (20%), Positives = 119/263 (45%), Gaps = 24/263 (9%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKN---ALAR 80 ++ DY + ++F ++ L +YG AL +P + L L++ N + Sbjct: 2 QDSEDYTQKKAFFERV--------LTVYGRKPALEALRDPLLQCHALHLSSSNRGGGIIT 53 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--------- 131 DA PV + + +I QG+AL+ +L P+ +++ Sbjct: 54 ELLDAAAKKSIPVHEHSREALARISKNGKQDQGVALD---ILCPSFRSLQTYVEELPGLA 110 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 Q ++ LD + +P N+G ILRSA A D ++ + + + + ++ K+++G L P + Sbjct: 111 PQRVLALDGITNPQNLGMILRSAAAGHIDAVLWSSKGNAALGPLVIKASAGTLYRAPLVM 170 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + +AL+++ + L +++ + L + +A +LG E +G+ + A Sbjct: 171 CDSQVNALRRLAQQEVEICSLEANASQTLFEFTPKKHVAYVLGNETEGVSKDVVQLADKS 230 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A++ + Sbjct: 231 LSIPMNNGVESLNVAVTASLIAF 253 >gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P++ + R ++ ++V+D V D NIGAI Sbjct: 79 PVYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G + +P+ + + +L + GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL P+T A + + M + +LN Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251 >gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] Length = 268 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P+L + R+++ ++V+D V D NIGAI Sbjct: 79 PVYTGDRELLTTLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L + ++ +GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D ++ I ++A+++G EG GL KT A + + M + +LN Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251 >gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 333 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 35/173 (20%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 N +L+ VL V DP N G ILR A A D +ITTK Y+P +S +G+L H Sbjct: 156 NPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 211 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA--------------- 230 +P I+ L D + + S G T L++D + QE+ A Sbjct: 212 VPIIQGVQLEDFAEDVKSQG--TAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKG 269 Query: 231 ---------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E +GL + + AT + + G ++LNV AAAV LY Sbjct: 270 NFDLSKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLY 322 >gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 268 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 8/242 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 K R E LF+ TV A + P R + L+ K D A LP P+ Sbjct: 22 KERDLVGREGLFIAEGETVLRAFTRDAPQRVVSLLIDPKRREKLADVFAGLPEFTPIYLA 81 Query: 97 PPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILR 152 +D I G +H+G LA+ P D + + +++VL + + N+G I R Sbjct: 82 EQGVLDAIAGFH-LHRGILAVGRKPPAVAARDLLASLPARAMVLVLCGIANHDNMGGIYR 140 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A AF D I+ + + GA+ +P R+S + + GF+ + L Sbjct: 141 NAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPTARLSRDESIADLLDATGFEGLAL 200 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + + L + A++LG EG GL P A + + M +LNV+ + + Sbjct: 201 SPSADEILATLKPAARTAVLLGTEGPGLSPDVMARARRIG-IPMANSFDSLNVATTSGIV 259 Query: 273 LY 274 L+ Sbjct: 260 LH 261 >gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 236 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + L+ V+ P+N+ AI+R+A A + + + + + +++G+ + Sbjct: 14 ATRQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKVHAV--WQAEQLRLHSHTSAGSRNWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 +N+TDA+ M + G Q + + + +EI K A+ILG E G+ P+ Sbjct: 72 ELETHANITDAVHAMKAQGMQVLATNLSERAVDFREIDYTKPTAIILGGEKHGITPEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQ 162 >gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 224 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D+VN HN+ AI+RS CD + + ++ S + + A + Sbjct: 5 RQPDLSLVMDNVNKAHNLSAIIRS-----CDAVGIHEIHAVSYRKNIFDRQTAAAGTTRW 59 Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + ++ ++T L + G Q + S SK + I + ALILGAE G+ + Sbjct: 60 VEVTLHQSITSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGAEWDGVSTEAL 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G+I++LNVS AAAV L+ Sbjct: 120 EAADHHISIPMHGMIESLNVSVAAAVILF 148 >gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 270 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 17/184 (9%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHN 146 PV T P + + ++ G +H+G+ A L P L +V +++ ++VL+ V DP N Sbjct: 77 VPVFTGPGELLAELTGY-VLHRGV---VASLDRPALPSVASLLADARRVVVLEDVVDPTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RS A D ++ T R + + + G + +P+ R + + G Sbjct: 133 VGAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAG 192 Query: 207 FQT--IGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 F + L+ D+ P E ++K+ ++LG+EG GL + +A ++ + M I Sbjct: 193 FHVAALALTPDAVSIRDFPAED---HEKLVIVLGSEGPGLSAEAIRSADTVVQIPMAHGI 249 Query: 261 KALN 264 +LN Sbjct: 250 DSLN 253 >gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 263 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 40/269 (14%) Query: 20 YAKL-RRNHRDYKKMQSFNQKSRHTSQ-----PEN------LFLYGVHTVSAALNNPSRK 67 Y KL ++ +RD + + F + R S+ PE LF G + S + Sbjct: 15 YGKLHQKKYRDSEGL-FFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGSYSGR 73 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 +F L T+ ARL +T P I + +++ AL P + Sbjct: 74 VFTL--TEKECARLS-----------QTATPSGIFGVFRQQS-----ALPFEP------E 109 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 S L++ LD V DP N G ILR+A F D +I + + +A +S++G++ + Sbjct: 110 RTDGSSLIVALDDVQDPGNAGTILRTAAWFGADAMICSAGTADRYNAKAVRSSAGSIYAL 169 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P+ + +L L ++ G+ I S + E +K L++G E G+ Q Sbjct: 170 PHYGVDSLETELLRLAGRGYAVIASSLAGQDFREFTSWPEKQVLVIGNEANGVSRPVQAL 229 Query: 248 ATSMA---HLHMPGIIKALNVSNAAAVAL 273 A + H+ +++LN S +AA+ + Sbjct: 230 AGRLVRIPHIGSKPRVESLNASVSAAILM 258 >gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica] gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica] Length = 608 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 15/127 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++ LD +ND HN+G+ILRS D +I T + S +AK++SGALE++P Sbjct: 438 RRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCAPLSPAVAKTSSGALEYMPV 497 Query: 190 IRISNL-TDALQKMHSWGFQTI---------GLSSDSKKPLEQE-----IKNDKIALILG 234 S QK + G+ + S + KPL + N L+LG Sbjct: 498 FENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPLSLRQCGSWLDNKPTVLVLG 557 Query: 235 AEGKGLR 241 E G+R Sbjct: 558 GEHGGVR 564 >gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 227 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A GI P+E L+ +++GA + Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNEMRTLSHTSAGARNWVDV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +A+ ++ S G Q + + SDS Q A+ILG+E G + ++ A Sbjct: 73 ETHDSIEEAISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQRQ 163 >gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736] gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736] Length = 271 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 16/184 (8%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G +++ PL PT D +R ++ +++++ VND N Sbjct: 76 PAPVYAVSPELAERVTGYH-VHRGALASMQRKPL--PTAADLLRRTRRVVIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R D+ ++ S Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----PDSWPRVWSRS 188 Query: 207 FQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + SS + + + D++AL+LGAEG L + A + M + Sbjct: 189 ARPASRSSPDPRREDPPPRRGRPHTMDRVALMLGAEGDALSTQALVAADEWVRIPMSHGV 248 Query: 261 KALN 264 +LN Sbjct: 249 DSLN 252 >gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16] Length = 645 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 21/207 (10%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--------KTVPPQTID 102 L+G+H+V A+ + R+ + K R + D + + + +D Sbjct: 45 LFGLHSVLEAMRSGKREFHSVYLKKTLEKRAESDDRIKEVLEKIKNMGIRKELLTDDQLD 104 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++ + +H G+ ++ + L + + + + +D V DP N+GAI RSA F DG+ Sbjct: 105 RLT-EYQLHNGICMDASAL---KFSSFQPKNVSIFVDKVLDPGNLGAIGRSAWFFGADGV 160 Query: 163 ITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------ 215 K P S + + KS+ GALEH+P + + ++ S G + + Sbjct: 161 GLVKGRGPKSVTPSMIKSSCGALEHLPVQQFEGFHEFRDQIKSNGGEIVATCDPLAAKKA 220 Query: 216 --SKKPLEQEIKNDKIALILGAEGKGL 240 + K L+Q + + ++LG EG G+ Sbjct: 221 GITAKSLDQWKPHKTVGIVLGDEGVGI 247 >gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] Length = 270 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/276 (19%), Positives = 120/276 (43%), Gaps = 18/276 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVS 58 + IS +++E I LK H K R R + + ++ + + + NL ++ H Sbjct: 6 VEFISSRENECIKRLKKLHDKKYREEFRSFITEGLKLVREAIDYQIECINLVIFSQH--- 62 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 ++ +Q + RL D + V P + + + + QG+ L Sbjct: 63 ------AKDRYQEFYWE--CKRLLEDGKIERVIEV----PDKLFEYITTTSTPQGI-LAE 109 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + + Sbjct: 110 CNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIR 169 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + G+L H+ +R + ++ + F + + + + + + +++G E + Sbjct: 170 ATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGNESE 229 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + AT + M G ++LN + AA++ LY Sbjct: 230 GVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLY 265 >gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 178 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V HNIG++ R++ AF D I + + K+A GA + + Sbjct: 25 LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+Q++H GF + + L +++ D K A+++G E KG++ + Sbjct: 85 NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + ++ N K Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176 >gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] Length = 198 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V +P N G ++R + A D ++ A +S++G+L HIP R Sbjct: 45 RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 104 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 +N+ D L ++ S G Q + S+D + L+ E+ A + G E GL A Sbjct: 105 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 164 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 165 RVRIPIRGRAESLNLATAASICLY 188 >gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2] Length = 147 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA AF D ++ T R + + + G + +P+ RI + + + Sbjct: 11 NVGAIFRSAAAFGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWPAGVDSLREL 70 Query: 206 GFQTIGLSSDSKKPLEQE---IKN------DKIALILGAEGKGLRPKTQETATSMAHLHM 256 GF L+ LEQ+ I++ ++ A++ G EG GLR T S + M Sbjct: 71 GFHVAALA------LEQDSVAIRDFAANAPERTAIVFGTEGDGLRRSTIAACDSTVMIPM 124 Query: 257 PGIIKALNVSNAAAVALYITQN 278 G + +LNV+ A+AVA + QN Sbjct: 125 SGGVDSLNVAAASAVACFALQN 146 >gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] Length = 272 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 76/140 (54%), Gaps = 3/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++L +N+P N+G ++R+A+ F G++ ++ + + ++A G++ H+P++ ++ Sbjct: 123 LLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHVPFLFGAD 182 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L+ L ++ F +G SS L +K AL+LG+E GL + H+ Sbjct: 183 LSKVLPRVKE-NFHVVG-SSVRTGTLPHAC-GEKTALLLGSESHGLPETLLKLTDEQWHI 239 Query: 255 HMPGIIKALNVSNAAAVALY 274 G+ ++L++ AAA+ +Y Sbjct: 240 PRRGVGESLSLPQAAAILMY 259 >gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032] gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032] Length = 267 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSA 59 M LI++ E+I DY+ + ++R P LF+ G + Sbjct: 1 MELITEPDDERIA---------------DYRALTDVELRTRW-EPPHGLFIAEGELVLRR 44 Query: 60 AL--NNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-- 114 AL P+R + LA LD DA PV P + + G VH+G+ Sbjct: 45 ALRAGYPARSYLVDAKRVDQLADLDTGDA------PVYAATPDVLQEATGFH-VHRGVLA 97 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + PL S + + ++ ++L+ VN+ N+GAI R+ A D ++ SPS + Sbjct: 98 SFRRKPLPS-AAEVLATARRTVILEDVNNHTNLGAIFRAVAALGVDAVL----LSPSCAD 152 Query: 175 VL----AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKND 227 L + + G + +PY ++ AL ++ GF + ++ + P+++ + Sbjct: 153 PLYRRSVRVSMGEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRA 212 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL+LGAEG GL + + M + +LNV+ A AVA + Sbjct: 213 RAALLLGAEGAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACW 259 >gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545] Length = 463 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + LD V DP N+GA+LRSA G++ + S S V++K+++GALE + + Sbjct: 299 VWLALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGALESMDVRSVG 358 Query: 194 NLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L + G+ G +++ + + + + L++G EG GLR + TSM Sbjct: 359 VMHRFLMRCVEDGWDVYGTAAEEGAADVADVDARGRPSVLVMGNEGAGLRTNVRRACTSM 418 >gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 286 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 20/256 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 +++ S S S+ E L GV V L +I +L K ++ D D L Sbjct: 20 FEQDASLENASCSDSKEEQAVLSGVKPVLELLEREPERIDAVLVRKGKRSQ-DTDRILDL 78 Query: 90 PFPVKT----VPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMV 137 K Q++D++ A HQG+ E A LL+ DA L++V Sbjct: 79 CRTAKVRFTLADAQSLDRLC--PAGHQGVVARLFEAGFTEFADLLTDATDA--PLPLILV 134 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DP N G + R+ A G++ + A ++A+GALE +P ++ N+ Sbjct: 135 LDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGARRAAAGALERLPVAKVMNIAR 194 Query: 198 ALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL + GF G S + + L+LG E G+RP+ + + H+ Sbjct: 195 ALDEARDAGFLIYGAAFGEGSLDAFTTRLHTPAL-LVLGNEEHGIRPQVAKRCHHLLHIP 253 Query: 256 MPGIIKALNVSNAAAV 271 M +LNV+ A + Sbjct: 254 MLRTFDSLNVAQAGGI 269 >gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] Length = 283 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSA 180 TL +S LL+V + P NIGA+LR+A A + D +I T Y+P+ + +S+ Sbjct: 125 TLAFATDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPN----IIRSS 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G + +P I + T+ + + + G + + + KP + A+++G E +GL Sbjct: 181 VGCVFTVP-IATGSTTEVIDFLKAKGINSYCAALTASKPYYEVSFKKASAIVVGTEDQGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +T + M GII ++NVS AAAV ++ Sbjct: 240 TEEWLTHSTQNIIIPMEGIIDSMNVSVAAAVLIF 273 >gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 260 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRIS 193 LD + DP N+G ++RSA AFS DGII +K Y+P L +S ++ + + I Sbjct: 121 LDDLQDPGNVGGLIRSADAFSLDGIILSKNTVELYNPK----LIRSTMASVFRVK-LYIV 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + K+ GF+ I S ++ K + ++ + G E KG+ + + + Sbjct: 176 ESKNEILKLKEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIY 235 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M I +LNV+ AA++ Y Sbjct: 236 IPMSEEINSLNVNVAASILFY 256 >gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 255 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 30/261 (11%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 H+ KL ++ K F + G H AL + + + L + + Sbjct: 14 HWKKLSTTRKERDKFAEF-------------LVEGFHLTEEALRK--KDLVKSLIVREGV 58 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----QGLALETA-PLLSPTLDAVRNSQ 133 ++P + ++ V ++ V KE QG+ A P T D ++ Sbjct: 59 -------DIPEGWDIEGVAHYSVTATVAKEISETEHTQGIFAHCAQPEF--TEDEQKSWT 109 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++D V DP NIG ++R+A A D +I K + + +SA G+ I ++ Sbjct: 110 KLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVK-G 168 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L + ++ + G G + + P+ + ++ ALI+G EG G+ P + Sbjct: 169 ELMEWTEQTKASGIPIFGTALQNSTPVHEAKTLEQFALIVGNEGSGVDPVLLQQTDQNLM 228 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A + LY Sbjct: 229 VPLYGNAESLNVAVATGILLY 249 >gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 250 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 46/285 (16%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +IS K++EKI LK K R Q FN+ + G H + AL Sbjct: 4 VISSKENEKIKHLKKLQNKKYR---------QKFNE----------FLIEGDHLIDEALK 44 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 N Q+ +TK N H F + + + +V E Q +A Sbjct: 45 NNFE--CQIYSTK---------PNEKHDFLITKEVLKHVSLLVNSE---QKIAKVKIKET 90 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSA 180 S + ++ L+++ DP NIG +LRSA++F+ II Y+P + +++ Sbjct: 91 SNDFLNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKNIIYDNLDIYNPK----IIRAS 146 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238 GA+ + + + N L+ + ++ IG L SDS L Q + KI LILG EG Sbjct: 147 QGAIFALNFFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTN-LYQNSFDKKIVLILGNEGL 205 Query: 239 GLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ +E T + ++ +P ++LNV+ A ++ + +N +K Sbjct: 206 GIE---KEILTLIDKNVIVPINFESLNVAIAGSIIMSYVENKGSK 247 >gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] Length = 281 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 14/244 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLD-WDAN 86 DY + + R E LF+ G + AL R +L + N RLD A Sbjct: 31 DYVALTDVVLRRRKEPA-EGLFIAEGERVIQRALRAGYRA-RSVLVSPN---RLDAVPAE 85 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L PV P+ + KI G E VH+G A+ P P + + + ++VL+ + Sbjct: 86 LGPEVPVYLAGPELMAKITGFE-VHRGALAAMARHPARDPA-ELLSWALRVLVLEDLVSH 143 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA+ RSA D I+ + R + + + G + +PY R+ AL + Sbjct: 144 TNLGAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLAD 203 Query: 205 WGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T+ L+ + + + + ++A++LG EG+GL Q AT + M + Sbjct: 204 RGFETLALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRIPMAAGVD 263 Query: 262 ALNV 265 +LNV Sbjct: 264 SLNV 267 >gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] Length = 698 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 32/244 (13%) Query: 51 LYGVHTVSAALNNPSR---KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIV 105 L+G+H V A+ + R I+ A +++ R+ + +K ++ +D++ Sbjct: 46 LFGLHAVLEAIRSGKRDFHSIYLKKAIEDSDTRIREILQIIQELGIKKESLTDDQLDRLT 105 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + +H G+ ++ +PL + +D V DP N+GAI RSA F DGI Sbjct: 106 -EYQLHNGICMDASPL---NFSNFETKNFSIFVDRVLDPGNLGAIGRSAWYFGADGICLV 161 Query: 166 KRYSPSE-SAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGF---------QTIGL 212 K P + + KS+ GALEH+P + N D++ K++S + G+ Sbjct: 162 KGRGPKTITPSMIKSSCGALEHLPVQQFENFHEFRDSI-KLNSGELVATCDPLAAEKAGI 220 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QETATSMA--HLHMPGIIKALNVSN 267 + K L + + ++LG EG G+ + +T S+A H + +LNVS Sbjct: 221 TV---KSLNEWKPKKTVGIVLGDEGVGISKEILNFCDTVISIAPTREHQSSVT-SLNVSV 276 Query: 268 AAAV 271 AAV Sbjct: 277 VAAV 280 >gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 229 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186 A R +VL+ + PHN A++R+ F + + RY S + K A + Sbjct: 31 AERTRHFTVVLEDIYQPHNASAVVRTCDIFGVQDLHVIENRYINRVSKYVTKGAQKWITT 90 Query: 187 IPY-IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244 Y N L + + G+Q I S + L Q+ K DK A + GAE G+ Sbjct: 91 KRYKTDGDNTKTCLNHLKTAGYQIIATSPHADANLLQDFKIDKKTAFVFGAEATGISDTV 150 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E A + M G ++ N+S AAA+ L Sbjct: 151 KEHADGFLKIPMVGFTESFNISVAAAIIL 179 >gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 270 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R ++ ++V+D V D NIGAI RSA A D ++ T + + + G++ Sbjct: 114 EICREARRIVVIDGVVDATNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLR 241 +P+ + L L K+H GF+T + L+ DS PL K+A+I+G EG GL Sbjct: 174 VPW---TWLDTTLSKLHDLGFRTAAMALTDDSISIDNPLLA--TEPKLAIIMGTEGDGLS 228 Query: 242 PKTQETATSMAHLHMPGIIKALN 264 +T A + + M + +LN Sbjct: 229 YETIAEADYVVRIPMSHDVDSLN 251 >gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 227 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A GI P+E L+ +++GA + Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNEMRTLSHTSAGARNWVDV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +A+ ++ S G Q + + SD+ + A+ILG+E G K ++ A Sbjct: 73 ETHDSIEEAITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950] Length = 268 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 14/182 (7%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 TV P + + A H L AP QLL V + +P N G ++R A Sbjct: 87 TVTPAGLVAVCDMPATHLDDVLAGAP------------QLLAVAVEIGEPGNAGTLIRLA 134 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G+I R + ++++G++ +P + + A+ + + G Q + + Sbjct: 135 DAMGAAGVILGGRSVDPYNGKCLRASAGSIFCVPVVVAPDALAAVDAVRAAGLQALATTV 194 Query: 215 DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D ++ L++ E+ A + G E GL + A + M G ++LNV++AAA+ Sbjct: 195 DGERRLDEAGELLGRPTAWLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAIC 254 Query: 273 LY 274 LY Sbjct: 255 LY 256 >gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] Length = 265 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +V + + P N+G ILRS+ A DG+I R + + + +++ G L +P + Sbjct: 116 FFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEAR 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D L ++ G + + ++K Q +A+ +G E GL + + AT Sbjct: 176 G-EDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVR 234 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G+ +LNV+ A + LY Sbjct: 235 IPMMGVADSLNVAMATTLLLY 255 >gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHN 146 PV T P + + ++ G +H+G+ A L P L V +++ ++VL+ V DP N Sbjct: 77 VPVFTGPGELLAELTGY-VLHRGV---VASLDRPALPTVASLLADARRVVVLEDVVDPTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RS A D ++ T R + + + G + +P+ R + + G Sbjct: 133 VGAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAG 192 Query: 207 FQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 F L+ + S + E ++ ++A++LG+EG GL + +A ++ + M I + Sbjct: 193 FHVAALALTPDAVSIRDFRAE-EHARLAIVLGSEGPGLSAEAISSADTVVRIPMAHGIDS 251 Query: 263 LN 264 LN Sbjct: 252 LN 253 >gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 267 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ + V+D V D NIGAI RSA A D ++ K + + + GA+ +P+ Sbjct: 118 NATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPW- 176 Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPL-EQEIKND-KIALILGAEGKGLRPKTQET 247 + L ++ + GF+T ++ + + PL + +K + ++A+++G EG GL + Sbjct: 177 --TWAEQPLAELSTIGFRTAAMALTHNSIPLNDARLKAEPRLAIVMGTEGDGLPSEVIAQ 234 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M + +LNV+ A+AVA + Sbjct: 235 ADYVVRIPMAHGVDSLNVAAASAVAFW 261 >gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R L +VL +++DPHN+ AI RSA AF D I +P + +KS++ A + + Sbjct: 18 SLRQKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPK-LGSKSSASAKKWV 76 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I + ++ + ++ I S S+ +PL A+I+G E G+ P+ Sbjct: 77 KTIYHQSANKLIRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAGVPPELTG 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 S ++ M G++++ NVS AAA+ L Sbjct: 137 LVDSELYIPMYGMVQSFNVSVAAAIIL 163 >gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23] Length = 548 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 119/296 (40%), Gaps = 82/296 (27%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDA--NLP--HPFPVKTVPPQT--- 100 FLYG V AAL R++++L +N D D NL PV VP + Sbjct: 223 FLYGRSVVKAALQQGRRQLYKLYVYGGENRRGVDDNDVIINLAKARGVPVTIVPNEDQRL 282 Query: 101 IDKI-VGKEAVHQGLALETAPL-------------------------------------- 121 +DK+ +G+ H G LET+PL Sbjct: 283 MDKMSMGRP--HNGFVLETSPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGEN 340 Query: 122 -LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P + L+++L + DP N+GA+LR+A D + T R S + + V+ KSA Sbjct: 341 TFVPKANNSAMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 400 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------------LSSDS---KKPL 220 +GA E + + + + L+ + G++T +S+D PL Sbjct: 401 AGAAEEVTIFTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQTSPL 460 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAV 271 +Q L+LG EG GL P+ + A L +P ++ +LNVS AA + Sbjct: 461 DQH----PCVLVLGNEGHGL-PRQIKVAADF-ELSVPRFVQGSSVDSLNVSVAAGL 510 >gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] Length = 178 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V HNIG++ R++ AF D I + + K+A GA + + Sbjct: 25 LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+Q++H GF + + L +++ D K A+++G E KG++ + Sbjct: 85 NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + ++ N K Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFVNKLMK 176 >gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08] Length = 279 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ---EIKND--KIALILGAEGKGLRPKTQETA 248 L ++ GF ++ SD L++ +++ + KIAL++G EG GL A Sbjct: 180 WAGGLDELRDHGFTVAAMAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 268 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P+L + R+++ ++V+D V D NIGAI Sbjct: 79 PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L + ++ +GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D ++ I ++A+++G EG GL KT A + + M + +LN Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251 >gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 270 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++LD + P NIG ++RSA GII T+ L +++ G+L +P Sbjct: 119 RQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLFALPI 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S++ A + +G+Q + S ++ Q + + A+++G E +G+ Sbjct: 179 VE-SDVETAYAWLKRYGYQVVTTSPRARVSFRQARYSTRTAIVMGNEREGVSEDWFARHD 237 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV NAA + LY Sbjct: 238 LSVSIPMHGRADSLNVGNAAVLMLY 262 >gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM 7454] gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM 7454] Length = 243 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S+ +++LDH+ DP N+G I+RSA AFS II + +++ G++ + +I Sbjct: 98 SKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFID 157 Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ D + K + + G S D K DKI L +G E G+ ++ + Sbjct: 158 LELEDVKDLINKDYKLILADMDGKSVDYFKSC------DKIILAIGNEANGISKSLKDLS 211 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G I++LN AA+A I N+F++ Sbjct: 212 DDFVSIKMDGEIESLN----AAIAASILMNNFSQ 241 >gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 243 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S+ +++LDH+ DP N+G I+RSA AFS II + +++ G++ + +I Sbjct: 98 SKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFID 157 Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ D + K + + G S D K DKI L +G E G+ ++ + Sbjct: 158 LELEDVKDLINKDYKLILADMDGKSVDYFKSC------DKIILAIGNEANGISKSLKDLS 211 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G I++LN AA+A I N+F++ Sbjct: 212 DDFVSIKMDGEIESLN----AAIAASILMNNFSQ 241 >gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] Length = 191 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187 R L ++L++V+ PHN+ AILR+ CD GI+ +P+ SG Sbjct: 16 RQPDLTVLLENVHKPHNLSAILRT-----CDAVGILEAHAVNPTGGVPTFNETSGGSHKW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 Y+R+ ++ +A+ + GF+ L D++ E + A++LGAE G+ +T Sbjct: 71 VYLRVHPSIQEAISFLKEKGFRVYATALREDARDFREVDY-TQPTAILLGAEKWGVSEET 129 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G++++LNVS AAAV L+ Q K Sbjct: 130 LALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 167 >gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 299 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N GA++R A A G+I + +S++G+L H+P R +++ + ++++ Sbjct: 152 EPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSRHTSIPEVVERL 211 Query: 203 HSWGFQTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAH 253 H G+ + S D L++ + ++A + G E GL Q+ A Sbjct: 212 HEQGYVVLATSGDGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGL-GDWQDLADVRVS 270 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + M G+ ++ N+ AAAV LY T Sbjct: 271 IPMQGLAESFNLVTAAAVCLYET 293 >gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 238 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 3/143 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++++D V D N+GAI R++VA S II + S + + + + GA R Sbjct: 84 GNMVVIVDGVTDSTNLGAIFRASVALSSPNIILDLHNTGSVTPKVVEISRGAALRARVWR 143 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + N+ A+ ++ GF +GL + + K+AL++G+E KG+R + Sbjct: 144 L-NIKQAIPRLKENGFSVVGLEAHHGTKVYHLDLTGKVALVVGSEDKGIRTTVRTLCDHF 202 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 ++ P ++LNV A ++ALY Sbjct: 203 GNI--PTDFESLNVHVALSIALY 223 >gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11] gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46] Length = 246 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P I +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-IMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL074PA1] gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL007PA1] gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL056PA1] gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA1] gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL045PA1] gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA1] gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL038PA1] gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA2] gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA2] gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA1] gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL099PA1] Length = 269 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248 L ++ GF ++ E+ D K+AL++G EG GL A Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEVSADLRQNPRKVALLMGTEGAGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] Length = 261 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 ++ L ++++++ DP N+G I+R + A DGII T Y+P +S G+L Sbjct: 107 DNGLYVIVENLQDPGNLGTIIRMSEAAGVDGIIMSPNTVDIYNPK----TIRSTMGSLYR 162 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P++ + L++M S G + + + A ++G EG GL Sbjct: 163 VPFVYADDFAGTLEQMKSKGVELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTN 222 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G +++LN + AA+V + Sbjct: 223 ICSNRIRIPMAGKVESLNAAIAASVLTF 250 >gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9] Length = 267 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A GI P E+ VL+ +++GA Sbjct: 47 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GIHKVHAVWPKENMRVLSHTSAGARNW 103 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + N+ DA+ ++ + G Q + + SD+ A+ILG E G+ + Sbjct: 104 VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 163 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 164 AQADQDIIIPMVGMVQSLNVSVASALILYEAQ 195 >gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana] gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana] Length = 400 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--- 191 ++VLD + DP N+G ++RSA+AF+ DG + +++ GA +P + Sbjct: 246 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNW 305 Query: 192 --ISNLTDALQKMHSWGF---QTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244 + L + Q G T L SK +E Q + + LILG+EG GL + Sbjct: 306 NHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQA 365 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + + M G ++LNVS A + LY+ QN Sbjct: 366 RKVCV-LVSIPMAGDFESLNVSVAGGIFLYMLQN 398 >gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 269 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASG 182 D + + L++VL+ V P N+GAILR+A A D +I T ++P+ +++ G Sbjct: 113 DQLSDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNA----IRASLG 168 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + +P + + L + + G Q + EQ ALILG+E +GL Sbjct: 169 TIFAVPTFEATT-AETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSEAEGLSD 227 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L M GI +LNVS AAV LY Sbjct: 228 RWLADDVTNIRLPMRGIADSLNVSTTAAVLLY 259 >gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] Length = 229 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R + L ++++HV+ PHN+ AILR SCD + + ++ S S +A G+ Sbjct: 18 RMANLTVLVEHVDKPHNLSAILR-----SCDAVGVLEAHAVSLSGRSRTYNSTAQGSQRW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P N+ +A++ + GF G LS D+ + + A +LGAE GL Sbjct: 73 VPLHSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCDFTG-PTAFVLGAEKWGLSENA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G++++LNVS A A L+ Sbjct: 132 TKLMDTDVFIPMRGMVQSLNVSVATATLLF 161 >gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803] gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803] Length = 274 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189 +++L +VL+ + DP N+G ILR+A A +GI +T P+ VL +S++G+ +P Sbjct: 118 HARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVL-RSSAGSSLLLPQ 176 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L L+K H+ G Q I + + L + +I G+EG+GL E T Sbjct: 177 QQLQSLPPLLEKFHTQGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTT 236 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + +++LNV+ A V LY Sbjct: 237 HQVAIPQAPQVESLNVAIAVGVMLY 261 >gi|301155625|emb|CBW15093.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1] Length = 357 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 9/120 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAK 178 L LD R L+VLD VN+ N+G ++R+ V + ++T + Y+P+ V Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCVFYGIKNVVTNQVEQLYAPAAMRV--- 258 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237 A G +EHI + + AL+ + G+Q I +S++ + LEQ K+AL+L +EG Sbjct: 259 -AEGGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGIALEQLKFAAKVALVL-SEG 316 >gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 268 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 38/285 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ K+ E++ S+K++ +++KK+Q+ +K R Q L G H V+ A Sbjct: 3 MDFEVKELVEELTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEA 51 Query: 61 LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAV 110 L R + +L+ TK LA D A + V +TV PQ I + + Sbjct: 52 LQ-ADRGLHELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDL 110 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQ A S + LD V DP N+G ++R+A A G++ + Sbjct: 111 HQ--------------VATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSAD 156 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKI 229 S + +S G+ H+ +L + + G+ G + + K Sbjct: 157 LFSPKVVRSMQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGF 215 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G EG+G+ + + T+ ++ M G ++LNV+ +A + ++ Sbjct: 216 ALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 260 >gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 18/248 (7%) Query: 37 NQKSRHTSQ--PENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 N+K +H ++ +N F G V N + F + L +D + P Sbjct: 7 NEKIKHLTRLLTDNRFRKKSGTFAVEGKQENERARKFGYEPVEYFLCESIFDEDFPAG-K 65 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + V + +K+ + + + + + A++ +++++ V P N+GA+LR Sbjct: 66 ISLVSEKVYEKVAYRGSSEGIIGIYNTKSFNLNAFAIKEDSSVIIIESVEKPGNLGAVLR 125 Query: 153 SAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWG 206 S AF D +I T Y+P+ + +S+ G L + + N L D L+ H Sbjct: 126 SCEAFGIDALIITDPKVDFYNPN----VIRSSVGCLFGMDIFQSENNALLDFLESNHFKI 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F T +S D+ Q+ + AL+ G E GL T+ + M G I +LN+S Sbjct: 182 FTT-RMSDDATDIFNQDFGG-RSALVFGTEHSGLSDFWIGKGTNTL-VPMTGSIDSLNLS 238 Query: 267 NAAAVALY 274 NA AV+ Y Sbjct: 239 NAVAVSGY 246 >gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 276 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A +NS++ +VL+ + DP N G ++RSA AFS + T + ++++G++ Sbjct: 109 LGAPKNSEVCLVLEDIQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVF 168 Query: 186 HIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P +R +S + AL + + SS + P+ Q AL++G EG GL Sbjct: 169 RMPVVRGPLSEIKSALGAEGVRLYAAVARSSGA-TPVMQAKLLAPCALMIGNEGAGLSMT 227 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A +H+P +++LN + A + +Y Sbjct: 228 ALELADE--QVHIPCSVESLNAAIAGSTLMY 256 >gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] Length = 261 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 8/144 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++LD + DP N+G ++R+ GII T Y+P + +S G++ +P+I Sbjct: 114 LLILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPK----VIRSTMGSVFRVPFI 169 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +L D ++++++ S + + IA I+G E G+ + + Sbjct: 170 YVKDLKDIIEELYARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKN 229 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A ++ +Y Sbjct: 230 KVKIPMLGEVESLNAAVAGSILMY 253 >gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 267 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 6/177 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + K+ G L P+L + ++ ++V+D V D NIGAI Sbjct: 79 LPVYTGSRELLSKLTGYVLTRGVLCAMHRPILRRVEEICHEARRIVVIDGVVDATNIGAI 138 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ + + + + GA+ IP+ + + +L + + GF+T Sbjct: 139 FRSAAALGMDAVLLRRNSCDPLNRRAVRVSMGAVFCIPW---TWMDGSLSDLSNLGFRTA 195 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ I K+A+++G+EG GL +T A + + M + +LN Sbjct: 196 AMALTDNSVSIDDPILMAESKLAIVVGSEGDGLAHETIAEADYVVRIPMSYGVDSLN 252 >gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis audaxviator MP104C] gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis audaxviator MP104C] Length = 272 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L++VLD + DP N+G I+R+A A G+IT + + ++++GAL H+P Sbjct: 114 RGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFHLPA 173 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L+ G Q L + + AL +G E +G A Sbjct: 174 FGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGNEARGCGEMLHAAAD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + MPG ++LNV AA++ +Y Sbjct: 234 RVVAIPMPGQAESLNVGVAASLFIY 258 >gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 10/187 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAIL 151 V PQ + + E QG+ P+ P D + S + +++ +V DP N G ++ Sbjct: 82 VHDCSPQVLAAMCDTEQ-PQGIIAVARPIDRPLADVLAGSPKFVVICTNVRDPGNAGTVI 140 Query: 152 RSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 R A A D +I + Y+P L +S+ G+L H+P R S++ + + G Sbjct: 141 RGADATGADAVILSDASVDLYNPK----LVRSSVGSLWHLPISRGSSIEEIFAACRAAGL 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + L A ++G E GL P+ +E + + + G ++LN++ Sbjct: 197 TLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYGHAESLNLAM 256 Query: 268 AAAVALY 274 AA V LY Sbjct: 257 AATVCLY 263 >gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 268 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 9/198 (4%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVR----NSQLLMVLDH 140 +P PV V +D+IVG +H+G LAL PL + TLDAV +++ Sbjct: 71 TVPAGTPVFAVGQDVLDRIVGFP-LHRGILALGEKPL-ARTLDAVLADLPEQAVVVAASE 128 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + + NIG + R+A AF ++T R + + GA+ P +L + Sbjct: 129 IGNHDNIGGLYRNAAAFGAAAVLTDDRCGDPFYRKSIRVSVGAVLRTPGAAAPSLEALVD 188 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + F+ I LS + +PL+ + AL+LG+EG GL P + T + M G Sbjct: 189 ALEAARFEVIALSPSAIEPLKGLKPGGRRALLLGSEGPGL-PASVMARTRTVGIPMAGGF 247 Query: 261 KALNVSNAAAVALY-ITQ 277 +LNVS +A+ LY +TQ Sbjct: 248 DSLNVSVTSALGLYQLTQ 265 >gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 275 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V ++ ++VL+ VND N+G+I R+A D ++ + + + G +P Sbjct: 119 VDGARTVVVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVP 178 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244 Y R ++ L + GF+ + ++ D+++ E ++ IAL++GAEG GL Sbjct: 179 YARAADWPADLLMLQQLGFRLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAA 238 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 239 LRISDLRVRIPMSRGTDSLNVATAAALAFY 268 >gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 352 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--- 191 ++VLD + DP N+G ++RSA+AF+ DG + +++ GA +P + Sbjct: 198 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNW 257 Query: 192 --ISNLTDALQKMHSWGF---QTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244 + L + Q G T L SK +E Q + + LILG+EG GL + Sbjct: 258 NHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQA 317 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + + M G ++LNVS A + LY+ QN Sbjct: 318 RKVCV-LVSIPMAGDFESLNVSVAGGIFLYMLQN 350 >gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] Length = 284 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 72/146 (49%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++L+ + DP N+G +LR+ G++ T ++P +S G++ +P+ Sbjct: 121 LLILESIQDPGNLGTMLRTGEGAGISGVVMNHTTVDLFNPK----TIRSTMGSIYRMPFF 176 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L + + ++ + G +T K ++ A ++G EG GL +T + A + Sbjct: 177 VTRDLAETICELKNAGVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADT 236 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + +A++ +Y T Sbjct: 237 YIKIPMCGQVESLNAAISASLLMYET 262 >gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210] gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium bovis AF2122/97] gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 288 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ E + +++IAL++GAEG GL Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 245 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 275 >gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 212 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 30/161 (18%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASG-ALE 185 R L +VL++V+DPHN+ A+LR SCD G++ Y+ E L+K+ SG AL+ Sbjct: 22 RQPDLTVVLENVHDPHNVSAVLR-----SCDAVGVLAVHLVYTIEEFPDLSKNVSGSALK 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIG------------LSSDSKKPLEQEIKNDKIALIL 233 + I+ ++ D + S G S D KP AL+ Sbjct: 77 WLEIIKHKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKP---------TALVF 127 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G E +G+ + A + M G++++LN+S A AV LY Sbjct: 128 GNEQRGVSEEASRLADGNFVIPMMGMVQSLNISVACAVTLY 168 >gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A A G+ + + S + +S G+ H+P + + Sbjct: 111 LILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPILE-GAI 169 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L+++ S G G + + P + K A ILG EG+G+ P+ ++ Sbjct: 170 PPFLKQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGVHPELLALTDKNVYI 229 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 + G ++LNV+ AA + +Y + Sbjct: 230 PIYGQAESLNVAIAAGILMYFS 251 >gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 281 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 15/187 (8%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV----RNSQLLMVLDHVNDPH 145 PV + I+++ G VH+G LA P L P+++ ++ ++VL+++ + Sbjct: 82 IPVYVASEELIEELTGFH-VHRGALAAMNRPEL-PSVEEFLGPDSTARRIIVLENLVNHT 139 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+ RS A D ++ T S + + G + +P+ RI + ++Q + Sbjct: 140 NVGAVFRSMAALGFDAVLLTDSASDPLYRRAVRVSMGTVFQVPWTRIPHWPRSMQMLKDR 199 Query: 206 GFQTIGLS-SDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 G+ T L+ D PL+Q + + K+ALILG EG GL T A + M Sbjct: 200 GWITASLALRDDALPLDQFAQLPDVMAPDSKVALILGTEGDGLSAATISHADHAVVIPMA 259 Query: 258 GIIKALN 264 G + +LN Sbjct: 260 GGVDSLN 266 >gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213] gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213] Length = 344 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKI 104 E + +YG + + I +L AT +L D + L H + + ++++ Sbjct: 106 EEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERV 165 Query: 105 VGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G E H G L +TA +L L + L++LD VN+ N+G I+R+ + Sbjct: 166 TGTE--HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGV 223 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GIIT S + SA A+ A G LE + + N AL ++ G+Q + L+ + P Sbjct: 224 KGIITENVDSLNSSAA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAP 282 Query: 220 LEQEIK-NDKIALIL 233 +IK +K+ +L Sbjct: 283 SLTKIKLAEKVVFVL 297 >gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium tuberculosis H37Rv] gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] Length = 288 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ E + +++IAL++GAEG GL Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 245 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 275 >gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] Length = 257 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 122/252 (48%), Gaps = 18/252 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+ + +K R ++ L G H V A+ S K ++AT+ +A D + Sbjct: 13 KAWKKLAT--KKGRQENR--TYLLDGWHLVEEAIK-ASAKFHAVMATEEQMATHLPD--V 65 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHN 146 PH P + + I G QG+ E + L T D + ++LD++ DP N Sbjct: 66 PHGVPAFEISDEVAKHIAGTN-TPQGIFAEIS-LPDKTFDPTYVHDGAWLLLDNIQDPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKM 202 +G ++R+A A G++ + + + S + ++ G+ H+ + ++ DAL + Sbjct: 124 VGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEVLNGDLNEWADALTANNL 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +G Q + S+ S + +E + + ALI+G EG+G+ + E T+ ++ + G ++ Sbjct: 184 SVYGSQ-LNESAQSYRAIE---PSTQFALIVGNEGQGMSNELAEKTTTNLYIPIQGQAES 239 Query: 263 LNVSNAAAVALY 274 LNV+ A + ++ Sbjct: 240 LNVAIAGGILMF 251 >gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + LD V DP N+GA+LRSA GI+ + S + ++ +++GALE + Sbjct: 90 VWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKNSSPLTTTVSAASAGALEFMTVYST 149 Query: 193 SNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 SNL L + G++ +G ++ DS E I L+LG+EG+GLR + + Sbjct: 150 SNLPKMLNRAREDGWRVLGAAADIPDSGGAARSETGKPTI-LVLGSEGRGLRTWVARSCS 208 Query: 250 SMAHLHMPG 258 + +PG Sbjct: 209 GF--VKVPG 215 >gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] Length = 194 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 9/150 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +++++V+ PHN+ AILR+ CD GI+ +P+ SG Y+ Sbjct: 23 LTVLMENVHKPHNLSAILRT-----CDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE 77 Query: 192 ISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249 + T+A + + GF + +E+ + A++LGAE G+ + A Sbjct: 78 VHPTTEAAFRHLRERGFSVYATALKEGARDYREVDYTRPTAIVLGAEKWGVSEEALALAD 137 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + H+ M G++++LNVS AAAV L+ Q Sbjct: 138 GLIHIPMLGMVQSLNVSVAAAVILFEAQRQ 167 >gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM 17244] gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM 17244] Length = 252 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 5/148 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +N +L LD V DP N+G ++RS+V D +I SP S + SA + Sbjct: 104 DINKNDNILY-LDTVQDPENVGGLIRSSVCTDFDAVILNSSASPFLSKAVRASAGSIIN- 161 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I + L+ + GF I + + K+ + KN+ LI+G EG G+ + + Sbjct: 162 -TKIILDEDYKILKTLKEKGFDIIASTLNGKEDITLNKKNN--VLIVGNEGNGISDECLK 218 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 AT + M G ++LN + + ++ +Y Sbjct: 219 YATKEVKIPMSGKCESLNANVSGSILMY 246 >gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] Length = 270 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/284 (20%), Positives = 121/284 (42%), Gaps = 34/284 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALARLD---WDA-NLPHPFPVKTVP--PQTIDKIVGKEAVHQGL 114 + I ++ ++ A R W+ L +K V P + + + + QG+ Sbjct: 47 IEYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGI 106 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSP 170 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Y+P Sbjct: 107 LAE-CNFVDKDINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G+L H+ +R + ++ + F + + + + + + Sbjct: 166 KTT----RATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++G E +G+ + AT + M G ++LN + AA++ LY Sbjct: 222 IVIGNESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLY 265 >gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 178 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V HNIG++ R++ AF D I + + K+A GA + + Sbjct: 25 LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+Q++H GF + + L +++ D K A+++G E KG++ + Sbjct: 85 NTLDAVQELHDQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + ++ N K Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176 >gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum SS9] Length = 234 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A GI P E+ VL+ +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GIHKVHAVWPKENMRVLSHTSAGARNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + N+ DA+ ++ + G Q + + SD+ A+ILG E G+ + Sbjct: 71 VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AQADQDIIIPMVGMVQSLNVSVASALILYEAQ 162 >gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] Length = 277 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 15/258 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA------- 77 R H +KK+ +R L G+H + + L + + +++ + Sbjct: 7 REHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVLLIVSESGSQHPEISQ 66 Query: 78 -LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L +D D P + ++I + LAL P + D +NS + Sbjct: 67 LLIHIDKD---PQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNS-FSI 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L+ + DP N+G++LRSA A +G+ + + + S ++ GA H ++I Sbjct: 123 LLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGA--HFS-LKIHENV 179 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D +Q + + + L + + G EG G+ + ET + M Sbjct: 180 DLIQVARQFAGNVVATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPM 239 Query: 257 PGIIKALNVSNAAAVALY 274 PG ++LNV+ AAA+ L+ Sbjct: 240 PGCTESLNVATAAAICLF 257 >gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 275 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P++ L ++L DP N+G ++R A A + + + + S + +++ G+ Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239 + H+P R +L ++ + + G+ +G LS D P+ N K+A ++G E G Sbjct: 173 VFHVPTPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + M G ++LNV++AA + L+++ Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269 >gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193 + L+ V DP N+G I+R+A A DGI ++ + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSHFHLPIYRLATA 164 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L D +K F + LS DS E+ + L++G EG+G+ + A + H Sbjct: 165 DLIDLAKKSDLPIFAST-LSDDSID-YEKLKGSQNFILVMGNEGQGISSMIEAAADQLVH 222 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + ++ Sbjct: 223 IPMKGKAESLNVAVAAGILIF 243 >gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 357 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 9/120 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAK 178 L LD R L+VLD VN+ N+G ++R+ + ++T + Y+P+ V Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCAFYGIKNVVTNQVEQLYAPAAMRV--- 258 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237 A G +EHI + + AL+ + G+Q I +S++ + LEQ +K+AL+L +EG Sbjct: 259 -AEGGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGVALEQLKFAEKVALVL-SEG 316 >gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22] gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L +K I + + Q + + P+ P + + + VLD++ DP Sbjct: 66 RLKDDKVIKIT--DAIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGKWV-VLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI ++ + + +A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQ-NPILEAISSFKEN 180 Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + K L I ++AL++G E G ETA ++ + G ++LN Sbjct: 181 GIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +VL +++DPHN+ AI RS AF + +P A+ K+++ A + + Sbjct: 74 RQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPF-PALGRKTSASARKWVES 132 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R + ++ + Q + S S + +PL A+I+G E G+ P+ + A Sbjct: 133 ARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVIMGNEHSGVEPELLQMA 192 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G+I++ NVS AAA+ L Sbjct: 193 DGELYIPMYGMIQSFNVSVAAAIIL 217 >gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 196 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALE 185 ++R L +VL +++DPHN+ AI RS AF + T P S + SA +E Sbjct: 18 SLRQKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSASARKWVE 77 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + L AL+K G + + S S S +PL + A+I+G E +G+ + Sbjct: 78 TERHEDPAQLAAALRKK---GCRILATSCSPSARPLREWDMTGPTAIIMGNEHRGVDAEL 134 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 E ++ M G+I++ NVS AAAV L Sbjct: 135 MEIVDGEVYIPMFGMIQSFNVSVAAAVIL 163 >gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 257 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G+H V A+ K ++AT+ +A D+ N+PH P + + I G Sbjct: 31 LLDGLHLVEEAVK-AGAKFHAIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN- 86 Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG+ E + L T D + + ++LD + DP N+G ++R+A A G++ Sbjct: 87 TPQGIFAEIS-LPEKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGT 145 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 + + + + ++ G+ H+ + +L++ + + + G + K ++++ + Sbjct: 146 ADAFAPKVVRAMQGSQFHLEVLN-GDLSEWVAALATNNLPVYGSQLNEKAKSYRDVEPST 204 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+G EG+G+ + E T+ ++ + G ++LNV+ A + ++ Sbjct: 205 QFGLIVGNEGQGMSAELAEKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] Length = 257 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 95 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 153 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ + K P + +++IAL++GAEG GL Sbjct: 154 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 213 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 214 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 244 >gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] Length = 110 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 55/98 (56%) Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+++GA+EH+P IR++NL + ++ GF G +++ + +A+++G+E Sbjct: 1 AKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSE 60 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+G+ + + M G + +LN S AA++ +Y Sbjct: 61 GQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMY 98 >gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1] Length = 695 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 115/296 (38%), Gaps = 82/296 (27%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------PHPFPVKTVPP---Q 99 FLYG V AAL RK++ L R+D N H P+ TVP + Sbjct: 312 FLYGRSVVKAALEQNRRKLYNLYIY-GGENRMDNKDNTIMTRMAEKHGVPITTVPTHEQR 370 Query: 100 TIDKI-VGKEAVHQGLALETAPL---------------------------------LSPT 125 +DK+ +G+ H G LE +PL ++ T Sbjct: 371 IMDKMSMGRP--HNGFVLEASPLPQLPIKSLGKLEESPGRLGFHVDLDYQTREEAAVNGT 428 Query: 126 LDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 R S +++L+ + DP N+G I+R+A D + T R S + + V+ KS Sbjct: 429 DTFTRRSNDVTPKPFVLLLNEIMDPGNLGGIIRTASYLGVDAVCITNRGSSTLTPVVLKS 488 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT-------------------IGLSS-DSKKP 219 A GA+E I + + +++ G++T I L S +S P Sbjct: 489 AVGAVEEISLFTVDDPVKFVEESGKAGWKTYAAVAPPDRKLVRRHGDKFISLDSIESTSP 548 Query: 220 LEQEIKND-KIALILGAEGKGLRPKTQ---ETATSMAHLHMPGIIKALNVSNAAAV 271 L ND L+LG EG GL + + S+ + +LNVS AA + Sbjct: 549 L-----NDHPCLLVLGNEGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGL 599 >gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 118/266 (44%), Gaps = 30/266 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLY-VLGTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136 L DK++ +A+ Q L+ P+ P + + + Sbjct: 66 KLKD------------DKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD++ DP N+G I+R+A A DG++ ++ + + +S G+ HI I+ + + Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171 Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A+ G + + + K L ++AL++G E G + ETA ++ Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIP 231 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HF+ Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253 >gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD ++DP N+G I R A AF+ D +I + + S + +++ GA+ +P+ Sbjct: 109 LDDISDPGNLGTIFRIAAAFNIDCLILSPKTCEISSPKVIRASLGAVYKVPFFFCE---- 164 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMAHLHM 256 ++K+ L K PL + ++ LG E KG+ + A + M Sbjct: 165 -MEKLQELKAHIFALDMQGKIPLTNFAPPSEPYIVALGNEAKGISSSILKIAEETLCIPM 223 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNVS ++A+ Y Sbjct: 224 PGEMESLNVSVSSAILAY 241 >gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 266 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 6/176 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P + + R ++ ++V+D V D NIGAI Sbjct: 79 PVYTGSRELLATLTGYVLTRGVLCAMRRPAVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G + +P+ + + +L + GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL P+T A + + M + +LN Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251 >gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 294 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V DP N+G ILR+A A G+I + + S + ++ GAL H+P+ Sbjct: 142 LYIVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEGI 201 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252 + + + + S + D + + ++ G E G+ ++E + Sbjct: 202 AVMELMDFVRSERVTLCAAACDDGACMHYAADLRQPLVIVFGNEANGV---SEELLAASE 258 Query: 253 HLHMP--GIIKALNVSNAAAVALY 274 H+++P G ++LNVS A A LY Sbjct: 259 HIYIPMCGSAESLNVSAAVAAVLY 282 >gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] Length = 221 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HNIGA+ R++ AF + I + + K+A GA + + Sbjct: 68 LVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDWKYFK 127 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 + DA+ ++H+ G+ + + + L E+ K K A++LG E KG++ + + Sbjct: 128 HTQDAVNELHNDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVKGVQQEVVDMCDG 187 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 188 CIEIPQFGTKHSLNVSVTAGIMIW 211 >gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 277 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 30/247 (12%) Query: 27 HRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84 HRD ++ FN ++ + +PE + RK++ A AL L W Sbjct: 30 HRDELRLYGFNAVRAVYARRPEAI----------------RKLYLAEARIPALQPLLKW- 72 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA---LETAPLLSPTLDAVR----NSQLLMV 137 + H + V ++K+ A H+G+ L APL P D +R L + Sbjct: 73 -CVAHRVGYRVVDDNDLNKLA-ASAHHEGVVADVLREAPL--PLADWLRTLAPGPALALW 128 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V +PHN GAILRSA F I+ + + + S A+ A G E +P +R+ Sbjct: 129 LDGVGNPHNFGAILRSAAHFGAAAILLPEGATLALSGAAARVAEGGAEAVPLVRLPAPAQ 188 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL ++ + F + L ++ ++GAE G+ + + Sbjct: 189 ALAQLRNADFALAATLVEGGDALFATALPQRLIYVMGAERDGMDRGFAQACDLRLSIPGS 248 Query: 258 GIIKALN 264 G +++LN Sbjct: 249 GAVESLN 255 >gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635] gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium falciparum 3D7] gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium falciparum 3D7] Length = 354 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 47/278 (16%) Query: 45 QPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPV---KTVPP 98 Q +N+ ++YG+++V A L R I +++ KN L R N + F + V Sbjct: 79 QNDNISDYIYGLNSVYAVLKKNERTIEEVIVNKNIKLNRKIHKQNYEYIFDELKKRNVSI 138 Query: 99 QTIDKIVGKEAV----HQGLALET-APLLSPTLDAVRN-------SQLLMVLDHVNDPHN 146 Q ++K E V H + ++T ++ D ++N + + + L V D N Sbjct: 139 QYMEKYKMNELVGGFPHNDIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMN 198 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAV-------LAKSASGALEHIPYIRISNLTDAL 199 IG + RS F I K+ +E + S+ G+ E + + I+N+ + + Sbjct: 199 IGNVCRSIFFFGGHTIFLKKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFM 258 Query: 200 QKMHSWGFQTIGLSSDSKKPLE-------QEIK---NDKIALILGAEGKGLRPKTQETAT 249 M GF TI +S K IK N+KI +ILG E KGL+ E + Sbjct: 259 NHMKLNGF-TIYSTSCHKNNTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSD 317 Query: 250 SMAHLHMPGI-------IKALNVSNAAAVALYITQNHF 280 +++ I +LNV+N ++ L NHF Sbjct: 318 YCVYINNLSYNENTQFHIDSLNVNNVCSIML----NHF 351 >gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 274 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L +V D P NIG ++RSA AF G+I T + ++++G+L +P +R Sbjct: 115 TMLTVVFDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVR 174 Query: 192 ISNLTDALQKMHSWGFQT----IGL---SSDSKKPLEQEIKNDK--IALILGAEGKGLRP 242 + A Q + SWG IG+ +D L+ + + +++G E GL Sbjct: 175 VP----ARQAVLSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSS 230 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E + + M G +LN + AA V LY Sbjct: 231 GWREACDQVVRIPMSGAASSLNAATAATVVLY 262 >gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148 PV V +T+ ++ G + +H+GL A + AP P + + ++ + VL+ V D NIG Sbjct: 69 PVYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVGEILEQARTIAVLEGVGDHENIG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201 AI R A + D ++ S + + +S ++ H+ + ++L LQ Sbjct: 126 AIFRHAAGMNVDAVLLG---SGAADPLYRRSVRVSMGHVLRVPFAHLEGGFTTWQRSLQA 182 Query: 202 MHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + F I L+ + + E DK+A+++GAEG GL + A + M Sbjct: 183 LADASFTLISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242 Query: 260 IKALNVSNAAAVALYITQ 277 +LNV+ AAA++ Y Q Sbjct: 243 TDSLNVATAAAISFYERQ 260 >gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 256 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 29/257 (11%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARL----D 82 +++ KMQS +K R S + G H V A+ + + I QL+ + L L D Sbjct: 15 KEWTKMQS--KKGRVKSG--EYVIEGWHIVDEAIRH-RQTIKQLMVVDESYLGDLPVDDD 69 Query: 83 WDANLPHPFPVK----TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + L P K T PQ + ++ E H E P D ++ + LL L Sbjct: 70 TEIFLITPEIAKHISSTETPQGVFAVLNTEDYH-----EQIP------DDLKGAWLL--L 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D++ DP NIG ++R+A A +GI+ K + + + +S G+ H+ + ++ + Sbjct: 117 DNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQGSQFHMK-LFTGDILEW 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMP 257 + G +T G + + +I K ALI+G EG G+ PK E ++ M Sbjct: 176 MAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVDPKILEKTDQNLYIPMN 235 Query: 258 GIIKALNVSNAAAVALY 274 G ++LNV+ A + L+ Sbjct: 236 GEAESLNVAVATGILLF 252 >gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ L ++ D V DP N+G I+R+A A + GI+ T+ + +S+ G++ +IP Sbjct: 107 LKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLRSSMGSIFYIP 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247 I L D ++ + GF+ + S D+ K L + ++ + L +G EG G+ + Sbjct: 167 VIEDFKL-DKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAVGNEGSGVSEEVYNI 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + MPG ++LN A ++ ++ Sbjct: 226 SDETFIIPMPGNAESLNAGVATSIIIF 252 >gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 269 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V + + L+ + DP N+G I+R+A A C G+I S ++ G++ +P Sbjct: 117 VNAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRATMGSIFAVP 176 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ + + +W IG +++ + ++ +++G EG GL + + Sbjct: 177 IVKMER-SAFISLQRAWAGDVIGTHLTAREDFRSLYREPQL-IVMGGEGPGLSSEAAASC 234 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T + + M G + +LN++ A + LY Sbjct: 235 TKLVKIPMAGKLDSLNLAVATGLMLY 260 >gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 277 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 89/185 (48%), Gaps = 3/185 (1%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGA 149 P+ +P + +KI ++ +A+ P ++++ S+ +++++ V P N+G Sbjct: 86 PIFELPRKIFEKISYRDRPDGLIAVAETPSAMVPWNSLQTSETNPILIIEGVEKPGNLGT 145 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A +I T + + ++++G + +P + I +LT+ L + G++ Sbjct: 146 ILRTAEGAGVGLVIVTDPRIDLFNPNVVRASTGTIFTLP-VYIGDLTEVLTEFKKQGYKR 204 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++ + K +K + G+E GL P +E A + +L M G +LN++ + Sbjct: 205 YAVTPEGKTLYTSVNLKEKSVFLFGSEQYGLSPLAKELADTTLYLPMFGEADSLNLAMSC 264 Query: 270 AVALY 274 + LY Sbjct: 265 GIVLY 269 >gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus ST398] Length = 246 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 257 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G+H V A+ K ++AT+ +A D+ N+PH P + + I G Sbjct: 31 LLDGLHLVEEAVK-AGAKFHAIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN- 86 Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG+ E + L T D + + ++LD + DP N+G ++R+A A G++ Sbjct: 87 TPQGIFAEIS-LPEKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGT 145 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 + + + + ++ G+ H+ + +L++ + + + G + K ++++ + Sbjct: 146 ADAFAPKVVRAMQGSQFHLEVLN-GDLSEWVAALAANNLPVYGSQLNEKAKSYRDVEPST 204 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+G EG+G+ + E T+ ++ + G ++LNV+ A + ++ Sbjct: 205 QFGLIVGNEGQGMSAELAEKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14] gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14] Length = 246 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 4/143 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +Q ++++D + DP N+G ++R+A A D I+ K + + +++ G++ HIP I Sbjct: 104 AQQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGSIFHIP-IV 162 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 I LT + + + T + S K +E + + AL+LG EG+G+ + + T Sbjct: 163 IKGLTTYINEFDGPVYGTALEDAVSFKEIEAQ---SRFALLLGNEGEGVNQELLQQTTQN 219 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 220 LIIPIYGKAESLNVAIAGSILLY 242 >gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] Length = 230 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 68 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALL-V 126 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ + K P + +++IAL++GAEG GL Sbjct: 127 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 186 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 187 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 217 >gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 182 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALE 185 D V QL +VLD + HN G I R A A II Y+P+ L K+A GA + Sbjct: 21 DFVDVKQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACG-YTPAPPHPKLEKTAMGADK 79 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKND-KIALILGAEGKGLRP 242 +P + + A++ + G++ I L+++ E+K + +A++ G E G+ P Sbjct: 80 MVPCRVMPDSATAVRTLREEGYRMI-LAAECMPGSRFAWEMKYEFPLAIVFGNEALGVAP 138 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T E + L M G ++NV N+AA LY Sbjct: 139 ETLELVDGLVSLPMFGEKSSINVGNSAAAILY 170 >gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] Length = 267 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D R+++ ++V+D V D NIGAI RSA A D ++ T+ + + + G++ Sbjct: 114 DTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243 +P+ + L L + GF+T + L+ +S + + ++ ++A+++G EG+GL P Sbjct: 174 VPW---TWLDGTLSDLARHGFRTAAMALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPD 230 Query: 244 TQETATSMAHLHMPGIIKALN 264 T A + + M + +LN Sbjct: 231 TIAAADYVVRIPMAHGVDSLN 251 >gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13] gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13] Length = 257 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---I 190 + + LD V DP N+G ILR++ A GI +++ + S +++ G +P + Sbjct: 114 MYLFLDKVQDPGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRASQGFQFQLPIYQNV 173 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ISNL S GF + + + + + K LILG+EG+G+ K ++ A Sbjct: 174 DISNLI-------SHGFSFVVADLNGQSVFDYNFSH-KTILILGSEGQGVTTKLKDIAHD 225 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L M +++LNV+ +AA+ Y N F + Sbjct: 226 EISLPMMNNVESLNVAVSAAIIGYQFLNQFNR 257 >gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus CGS00] Length = 246 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 261 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 2/145 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DP N+G I+R+AVA + DG+ ++ + ++++G ++ NL Sbjct: 112 IVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHKAISENL 171 Query: 196 TDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + K+ S G Q + +S E +++ I ++LG EG G+ + A + Sbjct: 172 KNEILKLQSQGLQVLATVPNSNINYWEIDLRKPTI-IVLGNEGSGISKDLIDLADYSVKI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ +AA+ LY Q Sbjct: 231 PLSNGVESLNVAVSAAIILYEIQRQ 255 >gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 246 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVTYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 180 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 127 DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKRYSPSESAVLAK 178 D +R Q L+ +L + DP N+GA R +A C+ I+T K +P +S + A Sbjct: 17 DFLRGVQRPEVDLVFLLQDLEDPVNVGAAFR--IADGCEASEIILTGKTPTPPDSTI-AG 73 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237 GA IP+ + + +AL ++ G+ + ++ P D++ L++G E Sbjct: 74 VGRGAHRRIPWRYVEHADEALVELKGMGYMACAIEVAEGAVPYYSLKYPDRVCLVVGHEY 133 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ +T + ++ M G IK+LNV A AV + Sbjct: 134 HGVTTRTLSVCDNAVYIPMYGKIKSLNVHVALAVVAF 170 >gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] Length = 242 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 80 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 138 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ + K P + +++IAL++GAEG GL Sbjct: 139 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 198 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 199 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 229 >gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122] gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122] Length = 246 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVTYKEVTSSDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA3] gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA4] Length = 277 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQT--IGLSSD--SKKPLEQEIKND--KIALILGAEGKGLRPKTQETA 248 L ++ GF + LS D S +++ + K+AL++G EG GL A Sbjct: 180 WAGGLDELRDHGFTVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 265 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V + +P N G ++R A A G+I + ++++G++ IP + Sbjct: 110 RLIAVAVEIGEPGNAGTVIRLAAAMGAHGVILGGHSVDPYNGKCLRASTGSIFSIPVVTE 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 ++ AL + G Q + + D +K L++ ++ A + G E +GL A Sbjct: 170 PDVPAALDALRGAGLQVLATTVDGEKRLDESADLLGRPTAWLFGPESRGLPSDVAGAADH 229 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AAA+ LY Sbjct: 230 RMRIPMSGGAESLNVASAAAICLY 253 >gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 246 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 17/239 (7%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 +K R + + G+H + A N +++F + + A +D+ F + Sbjct: 19 KKKRERDKTGQALIEGIHLIEEAYQSNLTIKQLFIIEPERTEQALIDY---AEETFQINM 75 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +T+ + + A + P D Q+L++ D + DP N+G ++R+A Sbjct: 76 KVAETLSGTITPQGFF-------AVIEKPNYDVTHAKQVLLI-DRIQDPGNLGTLIRTAD 127 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D I+ K + + + +++ G++ HIP + ++L +++ F T ++ Sbjct: 128 AAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPVVT-ADLQGFIKQFEGPVFGTALENAV 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S K L+ + + AL+LG EG G+ E T + + G ++LNV+ A ++ LY Sbjct: 187 SYKNLDPQ---ETFALLLGNEGDGVNNALLEHTTKNLIIPIYGKAESLNVAIAGSILLY 242 >gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL001PA1] gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA2] gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL060PA1] gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA2] gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL103PA1] Length = 277 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQT--IGLSSD--SKKPLEQEIKND--KIALILGAEGKGLRPKTQETA 248 L ++ GF + LS D S +++ + K+AL++G EG GL A Sbjct: 180 WAGGLDELRDHGFTVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] Length = 303 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + VL+ + D N+GAI RSA A + DGI+ + A+ + G + +P+ RI + Sbjct: 138 VCVLEGIVDHSNVGAIFRSAAALNVDGILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGS 197 Query: 195 LT-----DALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246 D + + GF + LS DS + + + ++ A+ +G EG GL+ +T Sbjct: 198 EARAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTIA 257 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 258 GCDKTIRIPMAHGVDSLNVAAASAVAFW 285 >gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 260 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D + L+VL V+DP N G ++RSA AF G++ P L ++A+G+ Sbjct: 106 MDLATTTGPLLVLAEVSDPGNAGTLMRSAEAFGATGVVVAGGVDPYNPK-LVRAAAGSSF 164 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P+ + + AL+ + G+ + + +A+ILG E GL + Sbjct: 165 RVPFAVVDDPMAALRILEEAGYGCWATVPRGGLSPAEVPSDGPVAIILGNEPHGLSDEVV 224 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G +++LNV+ A ++AL+ Sbjct: 225 AACVGTVSVPTVGGVESLNVAIAGSIALH 253 >gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 275 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195 VL+ + D N+GAI RSA A + D ++ T + + G + +P+ +I Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCP 184 Query: 196 ----TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETA 248 + ++H+ GF+T ++ SD ++ K+A++LG EG GL T Sbjct: 185 ADWPENGSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAAC 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 245 DYTVKIPMSHGVDSLNVAAASAVAFW 270 >gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 239 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +VL +++DPHN+ AI RS AF + +P + + K+++ A + + Sbjct: 63 RQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPT-LGRKTSASARKWVES 121 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R N D ++ + GFQ + S S++ +PL A+I+G E G+ + A Sbjct: 122 ERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVIMGNEHSGVEEELLSLA 181 Query: 249 TSMAHLHMPGIIKALNVS 266 ++ M G+I++ NVS Sbjct: 182 DGQLYIPMYGMIQSFNVS 199 >gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 246 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187 + +Q ++++D V DP N+G ++R+A A D +I K + P + VL +++ G++ H+ Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P+ Sbjct: 160 P-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + G ++LNV+ A ++ LY Sbjct: 216 TTQKLIIPIYGKAESLNVAIAGSILLY 242 >gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAK---SASGA 183 A R L +++D VN PHN AILR+ CD + + T P +S VL ++ A Sbjct: 14 ARRQPTLTVLMDEVNKPHNFSAILRT-----CDAVGVLTAHAVPPKSGVLPTFDATSGSA 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + R + A++++ + G Q + LS S E + ++LGAE G+ Sbjct: 69 HKWVAVQRQPDAVTAVRQLQAAGMQVLATHLSQRSLDYREPDYTR-PTCVLLGAEKWGVS 127 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + E A + + M G++++LNVS AAA L+ Q Sbjct: 128 DEAAEIADANIVIPMFGMVQSLNVSVAAATILFEAQRQ 165 >gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] Length = 279 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 20/266 (7%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLD 82 R++ +K++ + SR L G+H V A AL P + + +N R Sbjct: 7 RDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGRENPEIRFL 66 Query: 83 WD----------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN- 131 + H V P + + V GL + P+ SP ++ Sbjct: 67 LEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGL-MAIVPIPSPEAIPLKKR 125 Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++L+ + DP N+G+ILRSA A + + + + S ++A GA H Sbjct: 126 GQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGA--HF- 182 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +RI + + ++G + I D+KK L Q + +A + G EG GL + + A Sbjct: 183 LVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQVA 242 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LN + AAAV + Sbjct: 243 HERITIPMPGDAESLNAAAAAAVCFF 268 >gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] Length = 229 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++L+HV PHN+ AILR SCD + + ++ S S +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFSGRPRTYNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P ++ A++ + + GF+ G L +++K + + A +LGAE GL + Sbjct: 73 VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCDFTG-PTAFVLGAEKWGLSDQA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G++++LNVS A A L+ Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161 >gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 278 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 110/243 (45%), Gaps = 17/243 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G + V++ALN+ S + ++ T++A R + P+ + + D + + Sbjct: 36 GENAVTSALNHGS--VIEIFVTESAAQRFSSLLDATSSTPISFISDRAADHL-SETVTST 92 Query: 113 GL-AL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 GL AL + + L + A +N L+ V +P N G ++R + A G++ + Sbjct: 93 GLFALCNSQLSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFAGQS 152 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD---------SKKP 219 ++++G++ H+P R + + D + ++H GF + + D + +P Sbjct: 153 VDPLGGKAVRASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEASTSEP 212 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E+ I A + G E GL Q+ A + M G +++N++ AA++ LY + N Sbjct: 213 GEKPILAQPTAWLFGNEAHGLG-HWQDLADLRISIPMRGRAESMNLATAASICLYQSANA 271 Query: 280 FAK 282 A+ Sbjct: 272 LAR 274 >gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog, partial [Hydra magnipapillata] Length = 183 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RSA F D II ++ S +A ++K +SGA+E ++ L+ + Sbjct: 36 DPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDL 95 Query: 203 HSWGFQTIG-LSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHL--- 254 ++ + IG ++ D + + +++ L++G EG G+ P T + + Sbjct: 96 LNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSF 155 Query: 255 --HMPGIIKALNVSNAAAVALY 274 +P + +LNVS A + L+ Sbjct: 156 NDRLPEGLDSLNVSVATGILLH 177 >gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 259 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 38/276 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+K++ +++KK+Q+ +K R Q L G H V+ AL R + Sbjct: 3 EKLTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEALQ-ADRGLH 50 Query: 70 QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119 +L+ TK LA D A + V +TV PQ I + +HQ Sbjct: 51 ELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQ------- 103 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 A S + LD V DP N+G ++R+A A G++ + S + +S Sbjct: 104 -------VATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + + G+ G + + K AL++G EG+ Sbjct: 157 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 215 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + T+ ++ M G ++LNV+ +A + ++ Sbjct: 216 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 251 >gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes 130Z] gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes 130Z] Length = 361 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + ++++ G E H G+ + + P L LD R L++LD+V +P NIG IL Sbjct: 177 VDREELERVSGTEH-HGGICMLVKKRHPFTLKGYLDITRKEDSLVLLDNVRNPQNIGGIL 235 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ + +IT + ++SA + A G E + ++I++ AL ++ G+Q I Sbjct: 236 RTCAVYGVKALITAE-PELTQSANAMRVAEGGAEFVNILQINDTEQALAQLRQAGYQVIF 294 Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233 S+D + K + + ++ K +L Sbjct: 295 TSTDKQAKSMNKLMRMKKAVFVL 317 >gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 259 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 28/257 (10%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++K+Q+ +K R S E L G H V A+ + K+ ++ T LA + L Sbjct: 16 KAWQKLQT--KKGRQAS--ETYLLDGWHLVQEAIQHDG-KLHAVMGTAEQLA--EHQEEL 68 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVLDHVN 142 P PV + I K + QG+ E + P+ A R Q + + LD + Sbjct: 69 PLGVPVFEIT-DDIAKKLSDLVTPQGIFAEVS---LPS--ATREPQFIHDGAWLFLDAIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DP N+G ++R+A A G++ + YSP ++ G+ H+ NL D Sbjct: 123 DPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKA----LRAMQGSQFHLT-TTTGNLADW 177 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 G G D + + + ALI+G EG+G++P+ + T ++ + Sbjct: 178 TASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQGMQPELAKMTTQNLYIPIS 237 Query: 258 GIIKALNVSNAAAVALY 274 G ++LNV+ AA +A++ Sbjct: 238 GQAESLNVAVAAGIAMF 254 >gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 255 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 28/266 (10%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ KK+ NQK ++ + + G H A+ +K +L T+ AL +++ D Sbjct: 8 NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIK-AGKKYQYILGTEEALDKVNEDY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHV 141 NL K V I+K + + + E +L +D R N ++LD++ Sbjct: 66 NLE--LDGKNVI--LINKAIARHLSSTKNSQEIFMVLK--IDQPREFPFNYGKWVLLDNL 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-----AKSASGALEHIPYIRISNLT 196 DP N+G I+R+A A DG++ + SESA L ++ G+ HI I+ +L Sbjct: 120 ADPGNVGTIIRTADAAGFDGVVLS-----SESADLYNPKTQRAMQGSQFHIELIK-RDLA 173 Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 DA+ D S K L+ K ++ALI+G E G+ + ++ Sbjct: 174 DAITDFQDAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIP 233 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 234 IKGKAESLNAAVAAGIMIY----HFA 255 >gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 180 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLDHV +N+G++ RS+ AF + + + K+A GA + + ++ Sbjct: 29 LIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAEDSVNWVYYE 88 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 DA++ + + G++ + + Q+ + D K A+ILG E KG++ + + Sbjct: 89 RTQDAVEHLKAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGVQQEVVDQCDG 148 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 149 CIEIPQFGTKHSLNVSVTAGILVW 172 >gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 283 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 13/240 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + + +++ + GV V L +P + + A R++ LP Sbjct: 41 FRDLSTADRRPDRPGGRGLVIAEGVVVVERLLASP----YPVRAVLGVRRRVEALGELPA 96 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P V + + ++VG +++G+ A + AP P+LD + + L VL+ V D N+ Sbjct: 97 PAYVASA--DVMARVVGFH-LNRGVLAAADRAP--QPSLDELATGRRLAVLEGVGDHENL 151 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+ R+A A DG++ S + + G + +P+ + + L+ + GF Sbjct: 152 GALFRNAAALGIDGVVLGPGCSDPLYRRSVRVSMGHVLRVPFAAVDDWPGGLKLLQDKGF 211 Query: 208 QTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ S + + ++ ++A++LG+EG GL + A + M + +LNV Sbjct: 212 VVAALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271 >gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma] Length = 210 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 6/148 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S +++LD + DP N G +LRSA AF I + + + + GA+ ++ + R Sbjct: 51 SDKILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIFNLDFFR 110 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQE 246 +L + L + + IG L + N KIALILG EG+G+ +++ Sbjct: 111 -GDLANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYKIALILGNEGQGISVISRQ 169 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + ++++LNV+ A ++ ++ Sbjct: 170 KSDYLIAIPTTNLVESLNVAVAGSIIMF 197 >gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis E264] Length = 281 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 21/266 (7%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + L G+H SA L+ + ++ T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDG 76 Query: 77 ALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDA 128 AL+ + + P V T+P D + G+ + V G+ L AP L Sbjct: 77 ALSHAEARETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPAPALPE---- 128 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R S +VLD V D N+G+ILRSA A + + + S+ + +SA GA H Sbjct: 129 -RVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF- 184 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I DA + S + + +A + G EG G+ + ++ A Sbjct: 185 LLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAA 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T + PG +++LNV+ AAAV L+ Sbjct: 245 THRVTIPQPGGMESLNVAAAAAVCLF 270 >gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---K 178 L LD R + L ++L+HV PHN+ AILR SCD + + ++ + S L Sbjct: 27 LKAVLD-CRMADLTVLLEHVEKPHNLSAILR-----SCDAVGVLEAHAVNYSGRLPTFNS 80 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236 +A G+ + IP S++ A++ + GF+ G L +++ + + + A +LGAE Sbjct: 81 TAQGSQKWIPLKEHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCDF-CEPTAFVLGAE 139 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + M G++++LNVS AAA L+ Sbjct: 140 KWGLSKLATPLMDEGIFIPMSGMVQSLNVSVAAATLLF 177 >gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++++HV PHN+ AILR SCD + + ++ S S +A G+ Sbjct: 18 RMADLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSLSGRPRTFNSTAQGSQRW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P ++T A+ + + GF+ G L D++ + + A +LGAE GL Sbjct: 73 VPLRDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLSDAA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS A A L+ Sbjct: 132 TALMDQAVFIPMRGMVQSLNVSVATATLLF 161 >gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---K 178 L LD R + L ++L+HV PHN+ AILR SCD + + ++ + S L Sbjct: 11 LKAVLDC-RMADLTVLLEHVEKPHNLSAILR-----SCDAVGVLEAHAVNYSGRLPTFNS 64 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236 +A G+ + IP S++ A++ + GF+ G L +++ + + + A +LGAE Sbjct: 65 TAQGSQKWIPLKEHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCDF-CEPTAFVLGAE 123 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + M G++++LNVS AAA L+ Sbjct: 124 KWGLSELATPLMDEGIFIPMCGMVQSLNVSVAAATLLF 161 >gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++L+HV PHN+ AILR SCD + + ++ S +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFDGRPRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + A++ + GF+ G L D+K E + A +LGAE GL + Sbjct: 73 VPLHDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECDF-TVPTAFVLGAEKWGLTDQA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G++++LNVS A A L+ Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161 >gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA1] Length = 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248 L ++ GF ++ E D K+AL++G EG GL A Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] Length = 258 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 4/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRIS 193 L++LD + DP N+G ++R+A A D +I + P VL ++ G++ H+P I Sbjct: 115 LLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVL-RATQGSIWHLPVIHY- 172 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252 +L A+ + + + + + ++K +DK+ALI+G EG G+ + A Sbjct: 173 DLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGDLIQAADHSV 232 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 ++ M G ++LNV+ A + L+ Sbjct: 233 YIPMLGQAESLNVAVATGILLF 254 >gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] Length = 202 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L +V+++++DPHN+ AI+RS AF + Y+ L + AS + Sbjct: 24 ARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLL--YTSEAFPALGRRASASARKW 81 Query: 188 PYIRISNLTDALQ-KMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++AL + G + + S S S +PL + A++LG E +G+ P + Sbjct: 82 VGRHHHTSSEALAGHLRDHGMRILSTSCSPSARPLPEWEFTSPTAIVLGNEHRGVDPALR 141 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++ NVS AAA+ LY Sbjct: 142 SHIDGELFIPMQGMVQSFNVSVAAAIILY 170 >gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 249 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLA--LETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VP + +++ K HQG+ + P + P L + L++LD + D N G Sbjct: 53 VPVEKLNRFTRKN--HQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFG 110 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A D +I ++ + ++ K+++GA+ +I + +NL + + G Sbjct: 111 AICRTAECVGIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGIS 170 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 S ++K + + A+++G E G+ + A L + G ++LNVS A Sbjct: 171 VYAASEKAQKLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVA 230 Query: 269 AAVALY 274 LY Sbjct: 231 CGAILY 236 >gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] Length = 226 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A+R L + L+ ++ PHN+ AI+RSA A GI P + L+ SA+G+ Sbjct: 3 AMRQPDLTLCLEEIHKPHNVSAIVRSADAI---GIHQIHAIWPDQHVKLSVSSAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + I S+ DA+ ++ + G Q + + +EI + +++G E KG+ K Sbjct: 60 VKVISHSSTEDAIAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQEKKGISQKAL 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ +Y Q Sbjct: 120 ALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQ 153 >gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] Length = 171 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V D V++ NIG++ R AF + II P + K++ + +P+ + Sbjct: 18 ITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDNIPVFGRRMTKTSRATEKVVPFEITT 77 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 ++ + K+ G+ I L I K +KIAL++G E G+ P+T + Sbjct: 78 DIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENFGVNPETIYESDV 137 Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281 + H+ M G ++NV A + LY IT+ H Sbjct: 138 VMHIDMFGQNSSMNVVQATNIVLYEITRQHLV 169 >gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] Length = 275 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195 VL+ + D N+GAI RSA A + D ++ T + + G + +P+ +I Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCP 184 Query: 196 ----TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETA 248 + ++H+ GF+T ++ SD ++ K+A++LG EG GL T Sbjct: 185 ADWPENGSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAAC 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A+AVA + Sbjct: 245 DYTVKIPMSHGVDSLNVAAASAVAFW 270 >gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA1] gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA1] gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA2] gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA1] gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA1] gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA1] gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA2] gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL086PA1] gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA4] gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA1] gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA3] gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL067PA1] gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA1] gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA1] gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA1] gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA2] gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL078PA1] gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA2] gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA1] gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA1] gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA2] gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL097PA1] gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL092PA1] gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA3] gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA2] gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA1] gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA2] Length = 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248 L ++ GF ++ E D K+AL++G EG GL A Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 358 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 103 KIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ G E H G+ + + P L LD L++LD+VN+ NIG ILR+ F Sbjct: 181 KVSGTEH-HGGICMLVKKAHPFTLQGYLDVPHQEDCLVLLDNVNNAQNIGGILRTCAFFG 239 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217 I+ S + SAV + A G E++ + ++ +AL ++ G+Q + +SSD Sbjct: 240 VKNIVVENAESLN-SAVTLRVAEGGAEYVRVLETNDTRNALSQLRQAGYQILHVSSDENA 298 Query: 218 KPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273 L++ ++KN + ++ + K L K+ E L +K LNVS A + L Sbjct: 299 TALDKVQLKNKTVFVLSESTTKALSEKSDE----QVRLAFASPVKNGLNVSVNAGILL 352 >gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis F11] Length = 288 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187 V ++ + VL+ VND N+G+I R+A S D ++ T P + S AL + Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243 PY R ++ L + GF+ + ++ E + +++IAL++GAEG GL Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +LNV+ AAA+A Y Sbjct: 245 ALWISDVRVRIPMSRGTDSLNVATAAALAFY 275 >gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] Length = 787 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 42/179 (23%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE------SAVLAKSASGALEHI 187 ++++LD + +P NIGAI+RSAV F + +I + SA +S+ GA+E Sbjct: 507 VVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRSSRGAVE-- 564 Query: 188 PYIRISNL------TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKN-- 226 Y IS L + L + G++ + +S + KPL+ KN Sbjct: 565 -YCNISQLYLRRDAAEVLDEFVENGWEVVTTASNKLIDDNADNGIVEQFKPLKSLTKNIS 623 Query: 227 ------------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 I L+LG+E KG+ + +T + G+I++LNVS A+++ L Sbjct: 624 LYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQASSIIL 682 >gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial, partial [Hydra magnipapillata] Length = 227 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RSA F D II ++ S +A ++K +SGA+E ++ L+ + Sbjct: 80 DPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDL 139 Query: 203 HSWGFQTIG-LSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHL--- 254 ++ + IG ++ D + + +++ L++G EG G+ P T + + Sbjct: 140 LNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSF 199 Query: 255 --HMPGIIKALNVSNAAAVALY 274 +P + +LNVS A + L+ Sbjct: 200 NDRLPEGLDSLNVSVATGILLH 221 >gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus N315] gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus Mu3] gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115] gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300] gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315] gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115] gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300] gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981] gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA131] gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA177] gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus T0131] gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21172] gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21193] gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21189] Length = 246 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187 + +Q ++++D V DP N+G ++R+A A D +I K + P + VL +++ G++ H+ Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +L + + + + G + ++ ++ +D AL+LG EG+G+ P+ Sbjct: 160 P-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 T + + G ++LNV+ A ++ LY Sbjct: 216 TTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 161 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 127 DAVRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D ++ Q+ + L + V DP N G ILR+ A CDG+I R S + V+ K+++GA E Sbjct: 3 DVCKSEQVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIPPRNWTSAAGVVTKASAGASE 62 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ I +++ LQ+M + + L ++ L +G E +GL Q Sbjct: 63 YLNLIIANDMDALLQEMKQKDITLVCGQRSNAISLYAYTFPQRVCLAIGGEMRGLSKSVQ 122 Query: 246 ETATSMAHLHMP 257 S +L++P Sbjct: 123 --GHSDQNLYIP 132 >gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV V ++I G VH+G +++ ++ + L+V + + D N+GAI+ Sbjct: 78 PVYVVSEDLAEQITGFH-VHRGALASFKRIIAWSMHDLLAMDRLVVCEDIVDHTNVGAII 136 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A DG++ R + K++ G++ +P+ R+ + D L + GF Sbjct: 137 RCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWARMDDWRDGLATLQRAGFTVAA 196 Query: 212 LS-SDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ D L++ + K+A+++G EG GL A + + M I +LNV Sbjct: 197 LALRDDAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWISQADAAVRIPMAHGIDSLNV 256 Query: 266 SNAAAVALY 274 + AAAVA Y Sbjct: 257 AAAAAVACY 265 >gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 274 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 20/192 (10%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILR 152 V P +D + A QG+ A + P LD R+ L+V + DP N GA++R Sbjct: 86 VAPDVLDALTDTVA-PQGVVARCAMVDRPLKALLD--RSPTFLVVCADIRDPGNAGAVIR 142 Query: 153 SAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A A DG++ T Y+P ++ G+L H+P + ++ L + S G Q Sbjct: 143 CADAAGADGVVFTGDSVDPYNPKS----VRATVGSLFHLPLVIDRDVEGTLAALQSAGLQ 198 Query: 209 TIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L++D ++ + + A ++G E GL T+ A + + + G ++LN Sbjct: 199 V--LAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRAESLN 256 Query: 265 VSNAAAVALYIT 276 ++ AAAV LY T Sbjct: 257 LATAAAVCLYTT 268 >gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 179 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 1/145 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++++ ++L++V P N+G+I+R+A A + + +A K G ++ Sbjct: 21 SAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQ 80 Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L +A++++ + G++ +GL +D PL + + + +G E G+ P+ Sbjct: 81 TFETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCD 140 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++A + G + +LNV+ A AVA Y Sbjct: 141 AVAFIPQLGRVGSLNVATALAVACY 165 >gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] Length = 244 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGA 183 L+ +++ ++L+ + D NIGA+ R+A A GII K S + K+++G+ Sbjct: 84 VLNVIKSKKVLLAFSGIMDVRNIGAVARTAQASGLVGGIILPKHRSLDITPAAIKASTGS 143 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L IP +R+SNL ++ + G IG+ + + I + G+E K L Sbjct: 144 LLSIPVVRLSNLRYFVKDLKRRGVSVIGVEKRGSVRYDMLKYDLPICCVFGSESKSLSDV 203 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M +LN+S A+++ LY Sbjct: 204 FLRDLDQNVYIPMSNDFNSLNLSVASSILLY 234 >gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 254 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 56/268 (20%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ + + G H V AL S K ++LAT+ AL+RL A L + Sbjct: 19 QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138 +G ++ + ++ L + +NSQ + ++L Sbjct: 69 -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL 115 Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194 D + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ I+ ++ Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170 Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L DA+ + + L + K L + ++ALI+G E G+ P+ + A + Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLY 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G ++LN + AA + +Y HF+ Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254 >gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] Length = 186 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 130 RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 RN++ L ++++ V P NIG+I R+A AF + I +P + K+A G + Sbjct: 23 RNTEGRLALIVESVTGPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLV 82 Query: 188 PYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + +A++ + GF + L+ D+ E+ D + L++G+E G P Sbjct: 83 AWEEPVPAVEAVRAAKADGFTVVAVELTGDAAPLHAAELGGD-VCLVVGSEDHGCSPALL 141 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E A + ++ G + + NV+ A A+AL Sbjct: 142 EAADGVCYIPQVGRVGSFNVAVATAIAL 169 >gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1] Length = 302 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + K+ G L P + R+++ + VL+ V +P N+GAI Sbjct: 80 IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------SNLTDA---- 198 RSA A D ++ T S + + G + +P+ + +DA Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199 Query: 199 --------------------LQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGA 235 + +H GF+T ++ +D ++ + +++A++LG Sbjct: 200 KCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLGT 259 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298 >gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] Length = 302 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + K+ G L P + R+++ + VL+ V +P N+GAI Sbjct: 80 IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------SNLTDA---- 198 RSA A D ++ T S + + G + +P+ + +DA Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199 Query: 199 --------------------LQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGA 235 + +H GF+T ++ +D ++ + +++A++LG Sbjct: 200 KCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLGT 259 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298 >gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] gi|48425869|pdb|1V2X|A Chain A, Trmh gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus] gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] Length = 194 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187 R L ++L++V+ PHN+ AILR+ CD G++ +P+ SG Sbjct: 19 RQPDLTVLLENVHKPHNLSAILRT-----CDAVGVLEAHAVNPTGGVPTFNETSGGSHKW 73 Query: 188 PYIRI-SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 Y+R+ +L +A + + GF L D++ E + A++ GAE G+ + Sbjct: 74 VYLRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDY-TKPTAVLFGAEKWGVSEEA 132 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS AAAV L+ Q Sbjct: 133 LALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQ 167 >gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 182 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 1/145 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++++ ++L++V P N+G+I+R+A A + + +A K G ++ Sbjct: 24 SAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQ 83 Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L +A++++ + G++ +GL +D PL + + + +G E G+ P+ Sbjct: 84 TFETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++A + G + +LNV+ A AVA Y Sbjct: 144 AVAFIPQLGRVGSLNVATALAVACY 168 >gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] Length = 252 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 33/189 (17%) Query: 95 TVPPQTIDKIVGKEAV-----HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 T PQ I ++ KE V HQG L L+ V DP N+G Sbjct: 85 TQTPQGIVAVIQKEEVGLPDLHQGKYL--------------------FLEDVQDPGNVGT 124 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWG 206 ++R+A A G+I + + + S +S G+ H+P R +S + +A K + Sbjct: 125 MIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSFVEEA--KKSNLP 182 Query: 207 FQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 LS +SK E ++N L++G EG+G+ E+A + H+ M G ++LNV Sbjct: 183 ILATTLSRESKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNV 240 Query: 266 SNAAAVALY 274 + AA + ++ Sbjct: 241 AVAAGILMF 249 >gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] Length = 302 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 N +L+ VL + DP N G ILR A A D +ITTK Y+P +S +G+L H Sbjct: 126 NPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 181 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL--------------- 231 +P I+ L + + + S G T+ L++D + + D A+ Sbjct: 182 VPIIQGVELEEFAEDVKSQG--TVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKG 239 Query: 232 ----------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E +GL + + AT + + G ++LNV AAA+ LY Sbjct: 240 AFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLY 292 >gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 314 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 N +L+ VL + DP N G ILR A A D +ITTK Y+P +S +G+L H Sbjct: 138 NPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 193 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL--------------- 231 +P I+ L + + + S G T+ L++D + + D A+ Sbjct: 194 VPIIQGVELEEFAEDVKSQG--TVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKG 251 Query: 232 ----------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E +GL + + AT + + G ++LNV AAA+ LY Sbjct: 252 AFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLY 304 >gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500] gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500] Length = 536 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 130/317 (41%), Gaps = 89/317 (28%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLA---------------TKNALAR-------- 80 + P + F+YG+ V AA+ RK++ L K ALAR Sbjct: 185 TTPASEFIYGLSAVDAAIRCTRRKLYMLYIYQAVGEELSPEKIALRKLALARGIQVKMAF 244 Query: 81 LDWD-------ANLPH------PFPVKTVP-------PQTIDKI--VG--KEAVHQGLAL 116 WD A PH P+ +P P ID VG K++V + Sbjct: 245 AGWDKLLDKMSAGRPHNGVILEASPMPQIPVTSLRPVPSPIDDFFEVGLDKQSVEEAEVN 304 Query: 117 ETAPLLSPT--LDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 ++ ++ + V S+ L+++LD + DP N+GA++RSA D ++ T R S Sbjct: 305 GSSNRIARVERFEEVEKSRFPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPL 364 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-----------------------T 209 + V K+++GA E++ + + D +++ G++ T Sbjct: 365 TPVTIKASAGAAENMTIFKAKSEIDFIRRSRENGWRFYAADSPQNVSDLAATHGTLADYT 424 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---------- 259 ++++ P + + L+LG EG GL P+ + A + ++ +PG Sbjct: 425 ATVAANGSSPSASLLTSAPTVLMLGNEGTGLLPRIK--AQADGYVSIPGARIRPDLGIND 482 Query: 260 ---IKALNVSNAAAVAL 273 + +LNVS AAA+ + Sbjct: 483 AARVDSLNVSVAAALLM 499 >gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 263 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 35/258 (13%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R + S+ +K R T L G H + L ++KI L +T+ AL D++ L Sbjct: 23 RGLIEQNSYRKKQRQT------ILEGTHLCLSWLQE-NKKIHSLFSTEQALNHPDFEQIL 75 Query: 88 P----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLL------M 136 H F V EA+++ L+ L T+ +D N+Q L + Sbjct: 76 EYYQGHVF-------------VLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTL 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L++V DP N+G +LRSA A + ++ T+ + S + ++ GA + L Sbjct: 123 ILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLE 182 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D L+K F T SS + + Q+ A ILG EG+G + A ++ + Sbjct: 183 DILEKFEIPVFVT---SSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQ 238 Query: 257 PGIIKALNVSNAAAVALY 274 PG ++LNV+ A ++ + Sbjct: 239 PGGQESLNVAVAGSICFF 256 >gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] Length = 270 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Sbjct: 104 QGILAE-CNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ G+L H+ +R + ++ + F + + + + + + + Sbjct: 163 YNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFCV 222 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++G E +G+ + AT + M G ++LN + AA++ LY Sbjct: 223 VIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLY 265 >gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] Length = 179 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+P +A ++S+ L++VLDHV +N+G++ R++ AF + I + A + K Sbjct: 15 LTP--EAFKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 72 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGA 235 +A GA E + + + DA+ K+ G+ + + ++ KN K A+I+G Sbjct: 73 TALGAEETVGWEYFEDTMDAVDKLKQQGYTVCAVEQAEGSTMLDKLLLDKNKKYAVIMGN 132 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E KG++ + + G +LNVS + ++ Sbjct: 133 EVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIW 171 >gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] Length = 258 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 35/258 (13%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R + S+ +K R T L G H + L ++KI L +T+ AL D++ L Sbjct: 18 RGLIEQNSYRKKQRQT------ILEGTHLCLSWLQE-NKKIHSLFSTEQALNHPDFEQIL 70 Query: 88 P----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLL------M 136 H F V EA+++ L+ L T+ +D N+Q L + Sbjct: 71 EYYQGHVF-------------VLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTL 117 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L++V DP N+G +LRSA A + ++ T+ + S + ++ GA + L Sbjct: 118 ILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLE 177 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D L+K F T SS + + Q+ A ILG EG+G + A ++ + Sbjct: 178 DILEKFEIPVFVT---SSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG ++LNV+ A ++ + Sbjct: 234 PGGQESLNVAVAGSICFF 251 >gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum] Length = 237 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 37/179 (20%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +++LDHV D N G+ILRSA F +I + S S +++K + GA+E I + Sbjct: 39 NRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFY 98 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDK--------I 229 R+++ ++ + GF +G +++ P + K ND + Sbjct: 99 RLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPL 158 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPG--------------IIKALNVSNAAAVALY 274 L LG+E +GL + + L +PG I +LNV+ A + LY Sbjct: 159 VLALGSESRGLSENILNSCDLL--LRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILLY 215 >gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 226 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186 A R L +V+D++ DPHN+ A+LRS AF + Y+ S+ L K +SG A++ Sbjct: 38 ARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDV--HLYYTTSQWPDLGKKSSGSAMKW 95 Query: 187 IPYIR-------ISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237 I IR + NL H G Q + G S+ ++ ++ + A+IL E Sbjct: 96 IRLIRHVDAATMVGNLVGGGGSAHD-GGQILRTGFSATARPVMDFDF-TIPTAIILSNEH 153 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G P+ ++ M G++++LNVS AAA+ LY Sbjct: 154 RGTSPELAALVPDEVYIPMQGMVQSLNVSVAAAIILY 190 >gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208] Length = 131 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 2/128 (1%) Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ ++L + + + G Sbjct: 1 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWIANLEEEGV 59 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 IG + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 60 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 119 Query: 267 NAAAVALY 274 AA + LY Sbjct: 120 VAAGILLY 127 >gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 258 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 36/276 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+ + H +++KK+Q+ ++ Q L G H V+ A+ + +I Sbjct: 2 EKLTSIHNQHV-------KNWKKLQT----KKYRRQTGTYLLDGWHLVNEAVQS-GVQIL 49 Query: 70 QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119 QL+ T LA D ++ + V TV PQ I +V H+ Sbjct: 50 QLIGTSEQLAAHSDLNSLTNEVYEVTEEVMQHITDTVTPQGIAAVVPLPDAHK------- 102 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P ++++ L LD V DP N+G ++R+A A G++ + R + S + +S Sbjct: 103 ---VPDMESLHGGWLF--LDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRS 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238 G+ H+ +L ++ + G + + K ALI+G EG+ Sbjct: 158 MQGSQFHLKLYE-GDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQ 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + T+ ++ M G ++LNV+ +A + ++ Sbjct: 217 GMSDQLLSQTTANLYIPMRGQAESLNVAVSAGILMF 252 >gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] Length = 262 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 9/252 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + L G H SA L+ + ++ T ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142 + P + V P + + GL L A P +P L A R + +VLD V Sbjct: 66 GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +SA GA H + I DA + Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + +A + G EG G+ + +E AT + PG +++ Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALY 274 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLF 251 >gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] Length = 260 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIR 191 QL+ V + +P N G ++R A A +I R P L ++++G++ IP + Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGKCL-RASTGSIFAIPVVV 166 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ A+ + + G Q + + D + L+ + + A + G E GL + A Sbjct: 167 APDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALAD 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AAA+ LY Sbjct: 227 HRVHIPMSGGAESLNVAAAAAICLY 251 >gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97] gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 94_M4241A] gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210] gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN R506] gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN V2475] gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis AF2122/97] gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CDC1551A] gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148] gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] Length = 260 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL+ V + +P N G ++R A A +I R + ++++G++ IP + Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ A+ + + G Q + + D + L+ + + A + G E GL + A Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AAA+ LY Sbjct: 228 RVHIPMSGGAESLNVAAAAAICLY 251 >gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 22/258 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R N R + +F ++R +S + + G H V AL K Q L T R++ Sbjct: 11 RTNPRLKQLRAAFQGQARLSSG--LIAVEGEHMVEEAL-----KSGQALKTVFLSERMEL 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMV 137 A +P V +V I + QG+A LL P +V L+++ Sbjct: 64 PAYVPASVEVVSVASDVFASIA-ETRTPQGIA----ALLVPPAHSVEKMLEGPGEALILI 118 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLT 196 + DP N+G ++RSA AF G++TT SP + ++++G++ +P + Sbjct: 119 AVGLQDPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAM-RASAGSVFRLPVAVAT--P 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 DA++ + G + + D + + A+++G EG GL A + Sbjct: 176 DAMETLEQQGIKLLAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPC 235 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LN + A ++ LY Sbjct: 236 PGWVESLNAAVAGSILLY 253 >gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] Length = 232 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ A++R+A A I + + L SA+G+ + Sbjct: 14 AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAV--WPTTRMKTLVSSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ KM + G Q + + K + I + ++LG E G+ P+ Sbjct: 72 QVKTHKTIQDAVAKMKAKGMQILATNLSEKAVDFRAIDYTRPTCILLGQEKTGITPEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A S + M G++++LNVS A+A+ LY Q Sbjct: 132 LADSDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 276 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 11/190 (5%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIG 148 PV VPP+ +A L L P D V ++ + LD V DP N+G Sbjct: 80 PVNCVPPRLFAACAETDAPQGILLLMQRPPRRSLTDLVHAAEKVPFYLALDRVQDPGNVG 139 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWG 206 ILR+A A G+I + + S+ + ++ G+L ++P+I + + L+ + S Sbjct: 140 MILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEELLRFAQEQSLY 199 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALN 264 +D+ ++ I ++LG E G+ ++ + HL++P G ++LN Sbjct: 200 LYAAACDADAVTHFAADLCRPTI-VVLGNEANGV---SERLLGACQHLYVPMCGQAESLN 255 Query: 265 VSNAAAVALY 274 V++AA LY Sbjct: 256 VASAATAILY 265 >gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 256 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 35/275 (12%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI S+K+S +++ K+++ N + ++ FL G H V AL + + Sbjct: 3 EKISSVKNSKV-------KEWVKLKTNNGRKKY----RRFFLEGRHPVETALVEERQYEY 51 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++ LA L+ AN+ + V + + K + QG+ L + DAV Sbjct: 52 LIVEEGFDLASLE--ANVDEDKLI--VVTKEVSKHIADTVHEQGIFL-----IGYVEDAV 102 Query: 130 RN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180 + ++LD+V DP NIG ++R+A A G+I T Y+P + ++ Sbjct: 103 YEMPNDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPK----ILRAM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239 G+ H+ R+ NL ++ H G D ++I K +LI+G EG G Sbjct: 159 QGSQYHLQLKRL-NLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P+ + ++ + G ++LNV+ AA V ++ Sbjct: 218 MSPELVKATDCNLYIPIKGNAESLNVAVAAGVLMF 252 >gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA2] gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA2] gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA1] gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA2] gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA1] gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA3] gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA2] gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA2] gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA2] gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA3] gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA3] gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA1] gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA3] gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA2] gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL020PA1] gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266] Length = 269 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248 L ++ GF + E D K+AL++G EG GL A Sbjct: 180 WAGGLGELRDHGFTVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265 >gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L +VLD + DP N G ILR+A A ++ + +++ G+L H+P +R Sbjct: 80 RLAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGSVDPYNGKCVRASVGSLFHLPVVRG 139 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + + L + + G + + + L+ I + + A + G+E GL E A Sbjct: 140 GDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGLLRQPTAWLFGSEAHGLSDALTERA 199 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AAAV LY Sbjct: 200 DVRVRVPIYGAAESLNLATAAAVCLY 225 >gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] Length = 230 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK- 178 + TLD R L +++D V+ PHNI AI+R+ CD GI+ P A +A Sbjct: 9 ICETLDR-RQPDLTVIMDGVHKPHNIAAIVRT-----CDAVGILDVHAVLPKNRARMAAG 62 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237 +A G+ + + TD ++++ G Q + SD P + AL+LG E Sbjct: 63 TAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIPYREVDYTRPTALLLGTEK 122 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ + + M G++++ NVS AAA+ L Sbjct: 123 FGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIIL 158 >gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] Length = 229 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++L+HV PHN+ AILR SCD + + ++ S S +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFSGRPRTYNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P ++ A++ + + GF+ G L ++++ + + A +LGAE GL + Sbjct: 73 VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCDFTG-PTAFVLGAEKWGLSDQA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G++++LNVS A A L+ Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161 >gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 325 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRN-------SQLLM 136 PV V + + +IVG + +H+GL + P+ LDA R+ S + Sbjct: 95 IPVWCVSREVMAEIVGFD-MHRGLLASANRVDVPSISDVLDELDARRDRPDQPPVSGTIA 153 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---- 192 VL+ V D NIGA+ R+A D + + + + + G + +P+ Sbjct: 154 VLEGVGDHENIGALFRNAAGLGVDAVFFGAGCADPLYRRVVRVSMGHVLRVPFAYFDGNR 213 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250 S L ++ G++ + L+ SD L + + + ALI+GAEG GL + Sbjct: 214 STWQRGLSELQQRGYRCVALTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDV 273 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 A + M +LNV+ AAA+ Y Sbjct: 274 RARIPMAPGTDSLNVATAAAMGFY 297 >gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 286 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL HV DP N G +LR+A A D ++ T + +++ G+L H+P Sbjct: 125 KLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVATG 184 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + +A+ ++ + G + + ++ L+QE+ + A + G E GL +T+ A Sbjct: 185 VPVEEAVARLRAAGVRVLAADGAGERDLDQELDQGTLEGPCAWVFGNEAWGLPEETRALA 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + G ++LN++ AAAV LY Sbjct: 245 DAVVRVPIHGHAESLNLATAAAVCLY 270 >gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 175 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++V D +N P N G++ R A A I ES L ++A + + +PY + Sbjct: 22 FVLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPYSPDA 81 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ L + + IGL + + KPL E KIAL+LG E G+ Sbjct: 82 DVITTLNGLKEKDYHLIGLELTTTSKPLASLNEYAFKKIALVLGHERYGICEDVLNILDH 141 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + ++ M G ++NVS AAA+A Y Sbjct: 142 ITYIPMRGKNSSMNVSQAAAIAAY 165 >gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] Length = 248 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + V + ++L+ + DP N+G I R A A +GI + + S L +S G+L Sbjct: 90 ERVLSGDFFLLLESLQDPGNLGTIFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYR 149 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P+ + +L + + ++ G + +K A ++G EG+GL P+ E Sbjct: 150 LPFRIVPDLKETIAELKKKGVRCFASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSE 209 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + M G +++LN + AAA+ Y T Sbjct: 210 AADIRLRIPMKGGVESLNAAAAAAILSYET 239 >gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516] gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516] Length = 243 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRI 192 ++ L+ +NDP N+G I+RSA AF + II + + +SA G+L +I Y I Sbjct: 98 ILFLECINDPGNLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESI 157 Query: 193 SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 L+ S GF+ L +SK LE + K +K LI+G E G+ + ++ A Sbjct: 158 H----VLENYKSNGFKIYETSLEKNSKSILEIKDK-EKHVLIIGNEANGISDEIKKYADE 212 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M + ++LN S AA+++++ Sbjct: 213 FLIIPMDNVTESLNASIAASLSMF 236 >gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 257 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105 L L G+H V A L R + QL ++ALA + A L PV VP + K Sbjct: 31 LVLEGLHLVDAWLARQPR-LDQLFVREDALAHPEVTALLARLSADTPVAVVPAALLGKAS 89 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + + +AL P+ +P + +++LD V DP N+G +LR+A A + + Sbjct: 90 ELASPAEVIALAPIPVPAPY-----HGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLS 144 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + S ++ GA + + L LQ + + + PL Sbjct: 145 AGCADVWSGKALRAGMGAQFALDLHERAVLPAVLQAFSG---RKVVTHLEGSVPLWSLDL 201 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G EG G+ + A + MPG+ ++LNV+ AAA+ L+ Sbjct: 202 TGDVAFVFGNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLF 250 >gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis] Length = 400 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/322 (23%), Positives = 119/322 (36%), Gaps = 64/322 (19%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNN 63 KK ++I + S + R + +Y KM +P L +++G ++V +AL Sbjct: 84 KKYYDRIKQEESSKREQFRSHRSEYTKMHPL-----QGLKPNPLVDYVFGTNSVISALTA 138 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAVHQGLALETA 119 R+ F L L + + + + +DK + AVH + LE Sbjct: 139 KKREYFVKLHHYGPL-----NTQIQSLCSKNNIQTEEVDKHRLNLYTNYAVHNNVVLECK 193 Query: 120 PLLSPTL---------------------DAVRNSQLLMV-----------LDHVNDPHNI 147 PL P L AV + M LD V DPHN+ Sbjct: 194 PLQPPELSHLGLVNHEACTFDKSEIDYDQAVNTREKFMTNDNKKNPLGIYLDEVVDPHNV 253 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH---S 204 GAI+RSA D ++ + + S V++K +SG +E +P + +K Sbjct: 254 GAIIRSAYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLPIFTTAKPLQFFEKSKQDGG 313 Query: 205 WGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGLRPK-------TQETATSM 251 W F T +S K L + + L++G EG G+R T E Sbjct: 314 WMFVTSHMSISQKGNHLTMNELSGMLNELPVVLVVGNEGNGVRTNLLNRSDFTVEIPFGR 373 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 I +LNVS A A+ + Sbjct: 374 DPTEGRNTIDSLNVSVATALLI 395 >gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 176 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+ L P+++ +N +++VLD+V HN+G+ R+A F+ D + + Sbjct: 4 LKLDELNRPSVEEFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND-KI 229 + K+A GA + I + +N+ DA+ + G+Q I + + +S L+ E K D K Sbjct: 64 HREIEKTALGATQSIDWQYFANVADAVADLKENGYQIIAIEQAENSISLLDFEPKKDQKF 123 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL G E G+ + + + + G + N+ + + L+ Sbjct: 124 ALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLW 168 >gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 176 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 10/173 (5%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L T + T+D + + L++VLD V HN+G++ R+ AF + + S Sbjct: 4 LRTIEMDRLTVDEFKQADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKI 229 A + K+A GA + + + +A++ + + G++ + + Q I N K Sbjct: 64 MAEIHKTALGAEDSVTWKYFDTALEAVETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKY 123 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A++LG E KG+ + + + + G ++NVS + ++ HFAK Sbjct: 124 AVVLGNEVKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIW----HFAK 172 >gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] Length = 256 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL+ V + +P N G ++R A A +I R + ++++G++ IP + Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ A+ + + G Q + + D + L+ + + A + G E GL + A Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AAA+ LY Sbjct: 228 RVHILMSGGAESLNVAAAAAICLY 251 >gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] Length = 233 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 7/163 (4%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG E L +V++ + + +L + D NIGAI+RSA A D +I + Sbjct: 61 HQGFLAEVEEFSFGDLASVKDDKFVPILYGLTDVGNIGAIMRSAYALGADSVIVVA--NN 118 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDK 228 A + +++SGA + ++ ++ L ++ GF+ S+ S K LE KN Sbjct: 119 LNMAGVVRASSGAAYELNVVKAADGLSVLNELKQSGFEIYAASAGGTSFKELELGAKN-- 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 AL++G E +G+ + + + M +LNVS A A+ Sbjct: 177 -ALVMGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAI 218 >gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 18/198 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIG 148 P+ V +T+ ++ G + +H+GL A + AP P + + V +++ + VL+ V D NIG Sbjct: 69 PIYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVSEIVDSAKTIAVLEGVGDHENIG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201 AI R A D ++ S + + +S ++ H+ + ++L LQ Sbjct: 126 AIFRHAAGMGVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQA 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + F I L+ + + E + DK+A+++GAEG GL + A + M Sbjct: 183 LADASFTLISLTPNPEAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242 Query: 260 IKALNVSNAAAVALYITQ 277 +LNV+ AAA++ Y Q Sbjct: 243 TDSLNVATAAAISFYERQ 260 >gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] Length = 591 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 31/165 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII-----TTKRYSPSE--SAVLAKSASGALEH 186 +++ LD V +P N+GAI R+ F II T SP S +S+ GALEH Sbjct: 377 IIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINPFSGEAYRSSRGALEH 436 Query: 187 IPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKND---------------K 228 + I+ T+ ++ ++ + G++ + SS+ E+KN+ Sbjct: 437 VNISIINTYTETMECLNEFTSNGWELVVTSSN------LELKNNVTLYSKGSNKLLGLKP 490 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ G+E KG+ K + +T + G+I++LNV+ +A+V L Sbjct: 491 MILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVIL 535 >gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 258 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 38/281 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ +K+R Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119 +++ T LA L+ AN + TV PQ I +V H+ L Sbjct: 50 EVVGTTEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + S T G + + K D ALI+G EG+ Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 G+ T ++ M G ++LNV+ +A + ++ + QN Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256 >gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium baculatum DSM 4028] Length = 251 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N+G + R+ +A G++ K + AK+A+GAL+ +P ++ Sbjct: 103 LILALDQVQDPGNVGTLARTLLALGGAGLLFPKDRTAFIGPAAAKAAAGALDSLPLCQVV 162 Query: 194 NLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL AL G G + DS+ L Q N L+LG E KG+RP + T M Sbjct: 163 NLARALDTCAEAGLAIYGSGTGPDSRN-LFQARLNFPAVLVLGNEDKGMRPNVGKRCTEM 221 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M G +LNV+ A A+ + Sbjct: 222 LSIPMQGGFDSLNVAQAGAMIM 243 >gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv] gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis H37Rv] gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] Length = 260 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL+ V + +P N G ++R A A +I R + ++++G++ IP + Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ A+ + + G Q + + D + L+ + + A + G E GL + A Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AAA+ LY Sbjct: 228 RVHILMSGGAESLNVAAAAAICLY 251 >gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 246 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182 P D + Q+L++ D V DP N+G ++R+A A D +I K + P + VL +++ G Sbjct: 97 PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + + D + + G + ++ ++ D AL+LG EG+G+ P Sbjct: 155 SVFHLPIMTL----DLDTFITQFNGPVYGTALENAVAYKEVTSIDSFALLLGNEGEGVNP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] Length = 265 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%) Query: 40 SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-----PV 93 R E FL GV V A+ P + L+A D + F V Sbjct: 18 ERKARDREGKFLVEGVRMVREAMKRPELVEYVLVAC-------DVTGEMEEEFWRDAASV 70 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILR 152 + P+ + +I E +A+ P+ +++ S L++++D++ DP N+G ILR Sbjct: 71 YRIRPELVKEITDTENPSGIVAVCRKPVWD--WESIPESDGLILIVDNLRDPGNLGTILR 128 Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHSWGF 207 +A A D + T Y+P + +S+ GA+ H P + R+ N D ++++ G+ Sbjct: 129 TAWAAGVDAVFLLKGTVDMYNPK----VIRSSMGAVFHFPVFERVGN--DEVRELCHRGY 182 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +A+++G E G+ +E S + + + +LN + Sbjct: 183 RLVVADPKASLVFTDADYYGNVAVVIGGETAGISAVFEELPASRVRIPLREGVDSLNAAV 242 Query: 268 AAAVALY--ITQNHFAK 282 A + LY +Q H + Sbjct: 243 ACGIILYEAWSQRHLVR 259 >gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 5/143 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S +++LDH+NDP N+G ++RSA AF + II T+ + +++ G++ + ++ Sbjct: 98 SNRVLLLDHINDPGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVK 157 Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +SN D + + S + F + + + ++N I L +G E GL + S Sbjct: 158 LSN--DEIVNLKSRYKFLASHMEGCDVRKYDASLEN--IILAIGNEANGLSDFLRSLTDS 213 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + M G I++LN + AA++ + Sbjct: 214 FVKIAMQGKIESLNAAIAASIMM 236 >gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 276 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L+ VL HV DP N G +LR+A A D ++ T + ++++G+L H+P Sbjct: 115 GARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVT 174 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + A+Q++ G + + K+ L+ + A I G E GL + A Sbjct: 175 TGVPVAQAVQRLKDAGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADE 234 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN++ AAAV LY Sbjct: 235 VVRVPIHGRAESLNLATAAAVCLY 258 >gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 262 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 17/253 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIF---QLLATKNALARL 81 H Y + ++K RH+ + + GV V ALN PS ++ QL +T+ L Sbjct: 13 HVKYLRSLLRSRKDRHSER--RFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLL 70 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D A LP+ F P + + E +A+ P + +++ L+++LD V Sbjct: 71 DLIAQLPNAFATT---PAILAGLSDVETPQGIIAVIPMPQFTS-----QSASLILMLDGV 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LRSA A ++ + S + +S G +P + N AL Sbjct: 123 QDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNWETALPL 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + Q DS +Q LI+G E G+ T ++++ + M G ++ Sbjct: 183 IEHCQ-QRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTIT-IPMLGSLE 240 Query: 262 ALNVSNAAAVALY 274 +LN + A +V L+ Sbjct: 241 SLNAAVAGSVLLF 253 >gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4] gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4] Length = 261 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 +++KK+QS R Q +L G H + AL N + I +++ ++ + + Sbjct: 19 KNWKKLQS-----RRGRQKAGAYLIEGFHLIEEALKNHA-IILEIMISEEVVV-----GD 67 Query: 87 LPHPFPVKTVPPQT-IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P K V T I K++ + QG+ + LD ++ + LD+V DP Sbjct: 68 IPEFDEAKQVEISTEIAKLLSETETSQGIFAVVKKI--DQLDKPILTKPFLFLDNVQDPG 125 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A G++ K ++ + +S G+ H+P + +L + Sbjct: 126 NVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSMQGSHFHLPVYQ-GDLNEWFDLFFEL 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 F G + + +EI+ + L++G EG G+ + + T ++ + G ++LN Sbjct: 185 EFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNGMAAELLKRTTKNLYIPIVGQAESLN 244 Query: 265 VSNAAAVALY 274 V+ AA + ++ Sbjct: 245 VAVAAGILMF 254 >gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 265 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ + + V DP N+G I+R+A A D ++ T R + + +S +G+L H+P Sbjct: 114 RLIAICEEVRDPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVD 173 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L ++++H G + + D L +++ ++ A + G E +GL A Sbjct: 174 LELAHVVERVHEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLS 233 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 L + G ++LN++ AA+V LY T Sbjct: 234 LRLPIFGRAESLNLATAASVCLYET 258 >gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 76/157 (48%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TA T + + + +L ++++ + DP N+G I+R+A A D I + ++ + Sbjct: 96 TARFQPRTEEEITDFRLGLIIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVL 155 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++++GA +P S+LT ++K + G + ++ + Q ++LG EG Sbjct: 156 RASAGAWFQVPIFVTSDLTTVIKKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEG 215 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A + + + +++LNV+ A A+ LY Sbjct: 216 SGLSNSLIALADELVSIPLSQGVESLNVAIATALLLY 252 >gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 436 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V N+P N G ++R A A D ++ +S A+S++G+L HIP R Sbjct: 213 KLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARE 272 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATS 250 N+ + + G ++D + L +++ + A + G E GL + Q A Sbjct: 273 RNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADY 332 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G ++LN++ AA++ L+ + + AK Sbjct: 333 RVRIPIRGRAESLNLATAASICLFESSKYQAK 364 >gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159] gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159] Length = 246 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ V DP N+G I+R+A A + D + +++ + ++ +S G+ H+P R+ NL Sbjct: 105 LLLEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRV-NL 163 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + TI + SD + K + ALI+G EG+G+ + E A + H+ Sbjct: 164 LSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGITSEMTEQADVLTHI 223 Query: 255 HMPGIIKALNV 265 MPG ++LNV Sbjct: 224 TMPGRAESLNV 234 >gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205] gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205] Length = 258 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 23/232 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L G H + L RKIF L T+ AL HP + + + E + Sbjct: 35 LEGTHLCLSWLQQ-QRKIFSLFTTEQAL---------DHPELQEIIEIHQGHIFIISEVL 84 Query: 111 HQGLAL--ETAPLLSPTLDAVRNSQLL------MVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++ L+ T P L+ +D + SQ + ++L++V DP N+G +LRSA A + I Sbjct: 85 YKDLSTLGTTLPCLA-IVDLPKTSQTIDFKADTLILENVQDPGNVGTLLRSAAAANIKQI 143 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I T+ + S + ++ GA + LTD L K F T SS L Sbjct: 144 ICTQGSASLWSPRVLRAGMGAHFSVNCFENFQLTDILPKFEIPVFVT---SSHRSTSLYS 200 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ILG EG+G+ E A ++ + PG ++LNV+ A ++ + Sbjct: 201 KDLTQACVWILGNEGQGVSDYALEHAEAVT-IPQPGGQESLNVAIAGSICFF 251 >gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 285 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185 +N ++ D +D N G++LRSA AF D + + Y P + +S+ G L Sbjct: 130 QNKPFYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPK----VIRSSLGTLF 185 Query: 186 HIPYIRISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 H + ++ ++ + G +G S L + I LILG E KG+ Sbjct: 186 HTKLVFVNEFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEKKGMS 245 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + Q + + M G++ +LNVS A ++ L+ +T+N Sbjct: 246 VQLQSICDRIVKIPMLGVVNSLNVSCAGSILLWEVTRNR 284 >gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855] gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855] Length = 254 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L P+L + R+++ ++V+D V D NIGAI Sbjct: 61 PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L K+ GF+T Sbjct: 121 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKL---GFRTAA 177 Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244 ++ +D ++ I ++A+++G EG+GL KT Sbjct: 178 MALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKT 213 >gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 247 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 11/186 (5%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 K V PQ +K+ + + +A+ + ++ S L++VL+ V P N+GAILRS Sbjct: 59 KNVSPQVYEKMAYRGSTEGHIAVVRCKEHTLEKLQLKESPLIVVLESVEKPGNLGAILRS 118 Query: 154 AVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHSWGFQ 208 A A D +I T Y+P+ + +++ G + +P + S A K H Sbjct: 119 AEAAGIDALIVCDPLTDMYNPN----VIRASIGGVFCVPTAVCSSQECIAFLKEHGIKIL 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 T L DS + + ++ A+++G E GL + +E A + + M G + +LNVS + Sbjct: 175 TAQL-QDSYEYYDYDMTQGT-AIVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNVSVS 232 Query: 269 AAVALY 274 AA+ +Y Sbjct: 233 AAILMY 238 >gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE] gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE] Length = 234 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 95 TVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG + Sbjct: 49 VVDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGV 107 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+ F I+ + +A + + A G E+I + ++ AL ++ G+Q I Sbjct: 108 LRTCAYFGVKNIVADNVENLYSAASM-RVAEGGAEYIRVLETDDIDSALMQLRKSGYQVI 166 Query: 211 GLSSDSK-KPLEQEIKNDKIALIL 233 +S + + PL++ +K+ +L Sbjct: 167 HVSHNKQGDPLDKVRLKNKVVFVL 190 >gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA methyltransferase in Bacillus halodurans [Schistosoma japonicum] Length = 179 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 23/152 (15%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LDHV D N G+ILRSA F +I + S S +++K + GA+E I + R+++ Sbjct: 19 VLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFYRLTD 78 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDK--------IALIL 233 ++ + GF +G +++ P + K ND + L L Sbjct: 79 TVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLAL 138 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+E +GL + + L +PG+ LN+ Sbjct: 139 GSESRGLSENILNSCDLL--LRIPGLAIQLNL 168 >gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330] Length = 246 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ V DP N+G I+R+A A DG+ + + + +S G+ H+P R+ + Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 D ++ S + + +E+ + + AL++G EG+G+ P+ A + H+ Sbjct: 164 ADFIRLARSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGISPEMTAAADILIHI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA + ++ Sbjct: 224 SMRGQAESLNVAVAAGILIF 243 >gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 266 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + L+ V +P N+GAI+R+ A C+G+I TT Y P+ +++ G+L + +R Sbjct: 120 VALNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAA----IRASMGSLFALRMVR 175 Query: 192 ISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + +W G+ IG + D ++ + L++G+E GL Q Sbjct: 176 TT-----FDEFAAWKQTNGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSVGEQSV 230 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G +LN+ A ++ LY Sbjct: 231 CDTLVRIPMAGTCDSLNLGVATSIVLY 257 >gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] Length = 565 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ L+ + +PHNIGAILR A F I+ + S + S ++A G EH+ + Sbjct: 417 CILALEDLGNPHNIGAILRVAAHFGVSSIV-VRDASLARSGAALRTAEGGGEHVRLLEAD 475 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + L GF + SS L ++ L++G E GL QE S Sbjct: 476 DFSRMLAACRREGFTVVSTSSHEGTSLFAAPLPARVVLLIGQESTGLSSSLQE--GSDLK 533 Query: 254 LHMPGI--IKALNVSNAAAVAL 273 + +PG +++LNVS AA + L Sbjct: 534 ISIPGTKNVESLNVSVAAGILL 555 >gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA2] Length = 240 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 91 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 150 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248 L ++ GF + E D K+AL++G EG GL A Sbjct: 151 WAGGLGELRDHGFTVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 210 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G + +LNV+ AAAVA Y Sbjct: 211 DVVVRIPMAGGVDSLNVAAAAAVACY 236 >gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] Length = 196 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187 R L +VL +++DPHN+ AI RS AF G+ Y + A+ K+++ A + + Sbjct: 20 RQKDLTLVLANIHDPHNVSAIYRSCDAF---GVAQVHLYYTDTAFPALSGKTSASARKWV 76 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +R + + + + G Q + S S KP+ A+I+G E G+ + + Sbjct: 77 DTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVD 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G+I++ NVS AAA+ L Sbjct: 137 VVDGEVYIPMYGMIQSFNVSVAAAILL 163 >gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025] gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025] Length = 246 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ V DP N+G I+R+A A + D + +++ + ++ +S G+ H+P R+ NL Sbjct: 105 LLLEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRV-NL 163 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + TI + SD + K + ALI+G EG+G+ + E A + H+ Sbjct: 164 LSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGITSEMAEQADVLTHI 223 Query: 255 HMPGIIKALNV 265 MPG ++LNV Sbjct: 224 TMPGRAESLNV 234 >gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis SK135] gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis SK135] gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU144] gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU045] gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU028] Length = 246 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 38/236 (16%) Query: 42 HTSQPE--NLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP 98 + SQ E LF+ +S+++ + +++++Q+ L AL+ TV P Sbjct: 42 YQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKVAEALS--------------GTVTP 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 Q I+ K PT D Q+L++ D + DP N+G ++R+A A Sbjct: 88 QGFFAIIKK----------------PTYDKTLAKQVLLI-DRIQDPGNLGTLIRTADAAG 130 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ K + + +++ G++ HIP I D +H + G + ++ Sbjct: 131 LDLIVMEKGTADPFQDKVIRASQGSIFHIPVI----FDDINNYIHQFNGPVYGTALENAV 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG EG+G+ + T + + G ++LNV+ A ++ +Y Sbjct: 187 SFNDIEAQANFALILGNEGEGVNSDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242 >gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208] Length = 248 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+++D V DP N+G ++R+A A D ++ + S +SA G+ HIP ++ Sbjct: 106 LLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILK-RP 164 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + ++ S G G + ++ + + ALI+G EG G+ + ++ Sbjct: 165 LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYV 224 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AAA+ +Y Sbjct: 225 PLYGQAESLNVAVAAAILVY 244 >gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3] Length = 257 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+++D V DP N+G ++R+A A D ++ + S +SA G+ HIP ++ Sbjct: 115 LLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILK-RP 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + ++ S G G + ++ + + ALI+G EG G+ + ++ Sbjct: 174 LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYV 233 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AAA+ +Y Sbjct: 234 PLYGQAESLNVAVAAAILVY 253 >gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium] Length = 196 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 ++ + + + +++ D ++DP N+G I RSA A G++ T + ++ + +S++G++ Sbjct: 41 VEELESCEWIVIADQISDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSMF 100 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEGKGLRP 242 +IP + + Q GF +G SS + +P + KIA+++G E G+ Sbjct: 101 YIPVFEDITIDEVKQA----GFSIVGTSSHEQRGSRPFTEASLTGKIAIVVGNEAHGM-- 154 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + G ++LNV+ AA V + Sbjct: 155 DDAELVDQWITIPHRGRSESLNVAMAATVVCF 186 >gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] Length = 269 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 16/239 (6%) Query: 47 ENLFL-YGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTID 102 E LFL G+ TV LN PS ++ L + A + A P+ K ++ + Sbjct: 29 ERLFLAEGLRTVRELCLNLPSEEMLVALLVREGEAEV---ARFAQPWKGKLFSIGEKECA 85 Query: 103 KIVGKEAVHQGL--ALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ + A QG+ + P +AV + L++ LD V DP N+G ILR+AV F Sbjct: 86 QL-SETATSQGIFGVFRQQRPVEPAAEAVSATSDKSLIVALDDVQDPGNVGTILRTAVWF 144 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I + + +A +S +G++ I + + L L G+ S + K Sbjct: 145 GADALICSTGTADRYNAKAVRSCAGSIYAIRHYGVDRLERELLWFKKQGYSITSSSLEGK 204 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL 273 E K L++G E G+ + A + + G +++LN + +AA+ + Sbjct: 205 DFREFSSWPAKQVLVIGNEANGISEPVKALADRLVRIPHSGRSVRVESLNAAVSAAILM 263 >gi|296534733|ref|ZP_06897111.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264940|gb|EFH11187.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 176 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146 P + VPP + KI G H G+ AP P L A + LL VLD V +PHN Sbjct: 51 PYREVPPAELAKIAGTTH-HGGIVAIAAPRAVPALPAALPQTLFGPGLLPVLDGVGNPHN 109 Query: 147 IGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +GAI RSA F C ++ + ++ S+SA +++ G LE + R +L AL + Sbjct: 110 LGAIARSAAFFGCTSLLLSGDPRQAGLSDSAW--RTSEGGLEALSLYRAPDLPAALGAL 166 >gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 255 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A A G+ + S + +S G+ H+P + ++ Sbjct: 113 LILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILE-GDV 171 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHL 254 +QK+ + G G + + E+ K A ILG EG+G+ P ++ Sbjct: 172 PAFIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYI 231 Query: 255 HMPGIIKALNVSNAAAVALYI 275 + G ++LNV+ AA + +Y Sbjct: 232 PIYGQAESLNVAIAAGILMYF 252 >gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1] Length = 280 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 8/149 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + V ++DP N+G ++R A A CD ++ + ++++G++ H+P R Sbjct: 118 FVTVCAGISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGSVFHLPLARDR 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247 + + S G T L +D + L+ I +A ILG+E G P Sbjct: 178 DAQGVVAACRSAGLTT--LVADGRGELDLHAPEAAPILAGPVAWILGSEAHGPGPDVFAA 235 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + + G ++LN++ AAA+ LY T Sbjct: 236 ADHRVRVPIHGRAESLNLATAAAICLYAT 264 >gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 270 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ L + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Sbjct: 104 QGI-LAECNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ G+L H+ +R + ++ + F + + + + + + + Sbjct: 163 YNPKTIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCV 222 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++G E +G+ + AT + M G ++LN + AA++ LY Sbjct: 223 VIGNESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLY 265 >gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 295 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 7/156 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VL DP N+G LR+A AF + + A+S++G+L +P +R Sbjct: 131 LVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRER 190 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ AL ++ G ++D+ PL+ + + A + G E GL + A Sbjct: 191 DVAAALGQLRDAGLLLFATTADADLPLDEAESLLQRPCAWLFGNEASGLPEPAAQAADRR 250 Query: 252 AHLHM---PGI--IKALNVSNAAAVALYITQNHFAK 282 + M PG I++LN++ AA + LY T ++ Sbjct: 251 IAVPMRPTPGFAPIESLNLAVAAGICLYETARQRSR 286 >gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 269 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + + N+GAI RSA A D ++ T S + + G + +P+ I Sbjct: 118 VLEDIMNQTNMGAIFRSAAALGVDAVLLTDGCSDPLFRRTIRVSMGTVFQVPWKFIGKSD 177 Query: 197 DA-LQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252 + ++ GF T + L +D+ ++ +K +K+A++LG EG GL+ T E Sbjct: 178 SGYIYRLKKEGFLTAAMALRADTVSIEDEGLKRAEKLAIVLGTEGDGLKASTIEDCDMTI 237 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ A AVA + Sbjct: 238 KIPMAHGVDSLNVAAAGAVAFW 259 >gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 136 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 191 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 192 VAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 251 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 252 RALTDAVVRVPIHGKAESLNLATAAAVCLY 281 >gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +A ++ + V+D V D NIGAI RSA A D ++ K + + + G++ Sbjct: 114 EACADATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243 +P+ + L ++ + GF+T + L+ +S + ++K + ++A+++G EG GL + Sbjct: 174 VPW---TWSEQPLAELSALGFRTAAMALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQ 230 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M + +LNV+ A+AVA + Sbjct: 231 VIAQADYVVRIPMAHGVDSLNVAAASAVAFW 261 >gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 273 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 11/151 (7%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR + L +V + V P N+G++LRSA A DG I + + + + ++++GAL +P Sbjct: 115 VRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIRASTGALFSVP 174 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPK 243 N Q+ + W + + + + P +I D +A+++G E GL Sbjct: 175 LAEAEN-----QEAYDW-LKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGTEQTGLTEL 228 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + M G I +LNV+ A + LY Sbjct: 229 WMEHSDLPVRIPMLGKIDSLNVATATTILLY 259 >gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 126 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 181 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 182 VAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 241 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 242 RALTDAVVRVPIHGKAESLNLATAAAVCLY 271 >gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435] gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 246 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 10/149 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187 V+ ++ ++++D + DP N+G ++R++ A D I+ K + P + VL +++ G++ HI Sbjct: 101 VKQAKQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVL-RASQGSVFHI 159 Query: 188 PYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P I A K GF G + ++ +P ++ D AL+LG EG+G+ Sbjct: 160 PVIT------ADLKTFIAGFNGPVYGTALENAQPYKEVASQDIFALLLGNEGEGVNKALL 213 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LNV+ A ++ LY Sbjct: 214 NETSQNLTIPIYGKAESLNVAIAGSILLY 242 >gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 275 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P++ L ++L DP N G ++R A A + + + + S + +++ G+ Sbjct: 113 PSVTGSPEGNLALILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239 + H+P R +L ++ + + G+ +G LS D P+ N K+A ++G E G Sbjct: 173 VFHVPTPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + M G ++LNV++AA + L+++ Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269 >gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis C231] Length = 289 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V ++P N G ++R A A D II + +S++G+L HIP +R Sbjct: 133 RLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVRE 192 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 NL + + G + + ++ + L+ ++ + A ++G E GL E A Sbjct: 193 PNLQRVWDSLKARGLKILATTAQGEISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADH 252 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT-------QNHF 280 + + G ++LN++ AA+V LY + QNH Sbjct: 253 RVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNHL 289 >gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] Length = 277 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V DP N+G ILR+AVA GI+ + + + + ++A G L ++ + Sbjct: 127 LYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQGV 186 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKND---KIALILGAEGKGLRPKTQETAT 249 D LQ +++ L + + + QE I D A++ G E G+ A Sbjct: 187 EEKDFLQWAQE---RSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILARAR 243 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + ++ M G +++LNVS AAAV LY Sbjct: 244 RV-YVPMFGPVESLNVSAAAAVILY 267 >gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 261 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 14/150 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIR 191 +++++ + D NIG+ILR+A AF I+ S S S L +S + GA+ + + Sbjct: 111 ILIINAIVDSENIGSILRNAAAFGIKSILFD---SKSASPYLRRSVRVSMGAIFQLQLAK 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-------SKKPLEQEI-KNDKIALILGAEGKGLRPK 243 +NL D++Q++ + L+ SK QEI K + + LI+G E G+ Sbjct: 168 TTNLPDSIQRLKERPTNLVALALPKENSHHLSKTKTIQEIGKLENLVLIVGNEANGIEEG 227 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + ++ M I +LNVS+A AVAL Sbjct: 228 VLDASDVIGYIPMQNNIDSLNVSHALAVAL 257 >gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 255 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ + P + +L+ ++ + ++VLD + DP N+G I+R A A II TK Sbjct: 88 QGVIV-VYPYIKGSLEKLQKN--IVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDC 144 Query: 172 ESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + + +S+ G++ +I Y+ L L++ + + L DS E ++ ++ Sbjct: 145 YNEKVVRSSMGSILNMNILYMEEEELITFLKR-EGYKIEVTALDKDSVSYTEMKL-TERN 202 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++ G+EG G+ + + + GI ++LNV+ A + LY T+ Sbjct: 203 AIVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIILYKTK 250 >gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] Length = 254 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 5/148 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V + Q + +D V DP N+G I+R+A A D ++ + +A + ++ G+L H P Sbjct: 105 VADVQTALFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGSLFHFP 164 Query: 189 YIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I+ I Q H G S + + ALI+G EG G+ K + Sbjct: 165 VIKGDIGQWIAHFQNRH---IPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVNDKWLQ 221 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + LY Sbjct: 222 QTTANLYVPIYGQAESLNVAVATGILLY 249 >gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 237 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 16/162 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VLD + DP N+G + R+A+A D I P VL ++++GA+ ++P+ R Sbjct: 73 FILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLNQKVL-RASTGAVFNLPFKRYE 131 Query: 194 NLTDAL--------QKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKG 239 + + ++ + GF+ SS +K KP + LILG EG+G Sbjct: 132 GTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTKSTVLILGNEGQG 191 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + K QE + ++++LNV+ AV L + + A Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232 >gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 285 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V ++P N G ++R A A D II + +S++G+L HIP +R Sbjct: 129 RLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVRE 188 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 NL + + G + + ++ + L+ ++ + A ++G E GL E A Sbjct: 189 PNLQRVWDSLKARGLKILATTAQGEISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADH 248 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT-------QNHF 280 + + G ++LN++ AA+V LY + QNH Sbjct: 249 RVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNHL 285 >gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum marinum IMCC1322] gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum marinum IMCC1322] Length = 307 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%) Query: 126 LDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 LDAV S+ + LD V DP N+G I+RSA A GII + S +++ GA Sbjct: 148 LDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA 207 Query: 184 LEHIPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + ++ ++ N +D + W Q IG + + + + +++G E GL Sbjct: 208 IFNVEIVQ-CNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALMILMGNEQAGL 266 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + T + L M G +LN++ A V LY Sbjct: 267 PPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLY 300 >gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8] gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8] Length = 263 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L + +++L+ + DP NIG++LR+A A D + + + S + GA Sbjct: 104 PQLPVPEQPEFVLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQGA 163 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P + +L +ALQ+ + T + +S L + + A ++G EG GLR + Sbjct: 164 QFVLPIVERVDLINALQEFDGNSYAT-AMQGES---LYAQDLSAPTAFVIGNEGAGLRKQ 219 Query: 244 TQETATSMAHLHMP----GIIKALNVSNAAAVALY 274 T + + M G +++LN AAAV L+ Sbjct: 220 TMAATSKRITIPMANTALGSVESLNAGAAAAVCLF 254 >gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] Length = 277 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 10/146 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V DP N+G ILR+AVA GI+ + + + + ++A G L ++ + Sbjct: 127 LYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQGV 186 Query: 194 NLTDALQKMHSWGFQ-TIGLSSDSKKPLEQE-IKND---KIALILGAEGKGLRPKTQETA 248 D LQ W + ++ L + + + QE I D A++ G E G+ A Sbjct: 187 EEKDFLQ----WAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILARA 242 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ M G +++LNVS AAAV LY Sbjct: 243 RRV-YVPMFGPVESLNVSAAAAVILY 267 >gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] Length = 390 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 13/202 (6%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRN-----------S 132 A + P + V +D HQG+ L T P + D +R Sbjct: 153 ACIARDIPCEYVSKAALD-AASSHGAHQGVMLVTKPFTYTEFADVLRTIDERAAATSALP 211 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++VLDHV D N+GA +RSA +I + K+++GA+ +P +++ Sbjct: 212 QLVVVLDHVVDEGNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQV 271 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +N+ A+ ++ + GF + + +++ + + L++G+E +G+ +++ Sbjct: 272 ANVARAVLELKNHGFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFEC 331 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 L G+I++LNV+ AA V Y Sbjct: 332 KLPQRGVIESLNVAQAATVMCY 353 >gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R + L ++++HV PHN+ AILR SCD + + ++ S S +A G+ Sbjct: 18 RMADLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + + A+ + GF+ G L D++ + + A +LGAE GL + Sbjct: 73 VPLRDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLTEEA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS A A L+ Sbjct: 132 TGLMDQAVFIPMRGMVQSLNVSVATATLLF 161 >gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum] gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum] Length = 224 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 9/85 (10%) Query: 111 HQGLALETAPLLSPTLD------AVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ +PL +D A +N++ L +VLD + DP N+G I+RS F+ DG Sbjct: 37 HQGVILDCSPLTVLNIDFLKPFKANKNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDG 96 Query: 162 IITTKRYSPSESAVLAKSASGALEH 186 I+ + + S + +K +SGA+E+ Sbjct: 97 IVISDKCSNPITPTASKCSSGAVEN 121 >gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 21/164 (12%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R S L+ VL V DP N G ++R+A A D ++ + + +S +G+L H+P Sbjct: 133 RRSLLVAVLATVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGSLFHVPV 192 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------------KIA 230 + L D + +H G L++D P + + D A Sbjct: 193 VSGVPLADVVDAVHERGLTV--LAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTA 250 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E GL K +E A ++ + + G ++LN++ AA V LY Sbjct: 251 WVFGNEAWGLPEKDRELADAVVRVPIRGRAESLNLATAATVCLY 294 >gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 261 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 71/146 (48%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + +L +V++ + DP N+G I+R+A A DGI + + + ++++GA +P Sbjct: 107 ITDFRLGLVIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVP 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S+L ++K + GF + ++ + ++LG EG GL A Sbjct: 167 IFISSDLKRIVEKYKNNGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLA 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + + I++LNV+ A A+ LY Sbjct: 227 NEIVSIPLSEGIESLNVAIATALILY 252 >gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] Length = 217 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 12/154 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASG-A 183 A R L +VL++V+DPHN+ A+LR SCD + + Y+ E L+++ SG A Sbjct: 18 ARRQPDLTVVLENVHDPHNVSAVLR-----SCDAVGLLRVHLVYTLEEFPELSENVSGSA 72 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240 L+ + + ++ + + S GF T L ++ ++ K +AL+ G E +G+ Sbjct: 73 LKWLELVFHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGV 132 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G++++LN+S A AV+LY Sbjct: 133 SDEAVAGADGNFVIPMMGMVRSLNISVACAVSLY 166 >gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 344 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKI 104 E + +YG + + I +L AT +L D + L H + + ++++ Sbjct: 106 EEMKVYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERV 165 Query: 105 VGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G E H G L +TA +L L + L++LD VN+ N+G I+R+ + Sbjct: 166 TGTE--HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGV 223 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GIIT S + S+ A+ A G LE + + N AL ++ G+Q + L+ + P Sbjct: 224 KGIITENVDSLNSSSA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAP 282 Query: 220 LEQEIK-NDKIALIL 233 +IK +K+ +L Sbjct: 283 SLTKIKLAEKVVFVL 297 >gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 219 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R + + + ++ V HN A++RS AF +I +K P + + A GA + + Sbjct: 29 RTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNI----AMGAQQWV 84 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQE 246 R + T+ + + G++ I S + L + K +DKIAL G E GL + + Sbjct: 85 TTPRYNTTTECIDTLRKDGYKIIATSPHTDSYLLDDFKIDDKIALFFGTEKSGLSQEVLD 144 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LN+S +AA+ L Sbjct: 145 KADGYVKIPMVGFSESLNISVSAAILL 171 >gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 283 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 4/155 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L+ V + +L VL HV DP N G +LR+A A D +I T + ++++G+L Sbjct: 122 LERVGDVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASAGSLF 181 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLR 241 H+P + + A+ + G + ++ L + + + + G E GL Sbjct: 182 HLPVVVGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGWVFGNEAWGLP 241 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +T + + G ++LN++ AAAV LY T Sbjct: 242 EETVALTDGAVSVPIYGGAESLNLATAAAVCLYTT 276 >gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021] gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021] Length = 351 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ SA + A G E+I + ++ AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307 >gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 269 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 18/245 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84 DY+ + ++R P LF+ G + AL P+R + LA LD D Sbjct: 16 DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVDQLADLDTGD 74 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A PV P + + G VH+G+ + PL S + + ++ +++L+ VN Sbjct: 75 A------PVYAATPDVLQRATGFH-VHRGVLASFHRKPLRSAD-EVLAAARRVVILEDVN 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 + N+GAI R A A D ++ + + + + G + +PY ++ + L ++ Sbjct: 127 NHTNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAKLDSWPGGLDQV 186 Query: 203 HSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + GF + ++ + P+++ + ++ AL+LGAEG GL Q + + M Sbjct: 187 RAAGFTVLAMTPAPDAVPMQRLTPAQRERAALLLGAEGPGLTAAAQAASDVRVVIPMRRG 246 Query: 260 IKALN 264 + +LN Sbjct: 247 VDSLN 251 >gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 276 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 41/282 (14%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81 +N+ K+ ++F + S Q + + G H + L NPS+ +L T+ L + Sbjct: 6 KNNNLVKRFRTFKRGSSPKHQ-DFFCIEGTHLIEELLKSGKNPSK----ILVTEKWLRK- 59 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVH--------QGLALETAPLLSPTLDAVRNSQ 133 + NL F Q++ IV +E + G+A P Sbjct: 60 --NQNLSRKFH------QSLINIVTEEVLASAISTINPDGIAALVEISTIPNYKFDTKDD 111 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VLD + DP N+G++ R+A+A D I P VL +++SGA+ H+P++R Sbjct: 112 FVLVLDRIQDPGNMGSLFRTALAAGVDAIFLAGGAHPLGQKVL-RASSGAVFHLPFLRFD 170 Query: 194 NLTDALQKMHSW--------GFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKG 239 + + GF+ SS++K + ++ ALILG EG+G Sbjct: 171 GTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQG 230 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + K QE + ++++LNV+ AV L + + A Sbjct: 231 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 271 >gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 265 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 24/255 (9%) Query: 40 SRHTSQPE---------NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL-- 87 S+H+ +PE + F++G+ V A+ + K + +NAL + ++ Sbjct: 4 SQHSHKPESGQAEPNKKDDFIFGLRPVIEAIE--AGKTIDKIFMQNALQGDIYYELKTLL 61 Query: 88 -PHPFPVKTVPPQTIDKIVGKEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLD 139 H VP + +++ K HQG+ E+ + P L + L++LD Sbjct: 62 SKHNIRPNYVPIEKLNRFTRKN--HQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILD 119 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N GAI R+A II ++ + ++ K+++GA+ ++ + NL A+ Sbjct: 120 RLTDVRNFGAICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAV 179 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G Q S ++K + A+++G E G+ + + L + G Sbjct: 180 DFLQQSGLQVFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGK 239 Query: 260 IKALNVSNAAAVALY 274 ++LNVS A LY Sbjct: 240 TQSLNVSVACGAILY 254 >gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] Length = 176 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T V L+++LD++ HN+GA R+A AF + II + K+A GA Sbjct: 17 TFKKVEKIPLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGAT 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 E + + ++ A+ + S G++ IG+ ++DS+ + I K+ K ALILG E +G+ Sbjct: 77 ESVDWSHEADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + ++ FAK Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMW----EFAK 173 >gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 290 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 17/189 (8%) Query: 110 VHQG-LALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +H+G LA P+L P+LD + + + ++VL+++ D N+GA RSA A D Sbjct: 103 LHRGALAAMQRPVL-PSLDELLATAHGGTPARRVVVLENLVDHTNVGAAFRSATALGVDA 161 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL 220 ++ T + + + + G + IP+ R+ + + + GF L+ SD L Sbjct: 162 VLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSWPGDITALQEAGFTVASLALSDDSVSL 221 Query: 221 EQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + ++A+++G EG GL +T + + M + +LNV+ A+AV Sbjct: 222 DDFASLPALQGPGARLAMVMGTEGDGLGHRTIAASDYTVKIPMDHGVDSLNVAAASAVVF 281 Query: 274 YITQNHFAK 282 + T+ A+ Sbjct: 282 WATRGVGAQ 290 >gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 259 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+ + DP NIG ILRSA A II + + S + ++A GA + SNL Sbjct: 115 VVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLRLHPASNL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q F T L+++S PL + A + G EG GL + TAT + Sbjct: 175 AVWRQTYREPLFAT-ALTANST-PLYRLNLRPPCAWLFGNEGGGLTAAARNTATRTVKIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 M G ++LNV+ AA V L+ Sbjct: 233 MSGATESLNVAMAATVCLF 251 >gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae ACS-120-V-Col10a] gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae ACS-120-V-Col10a] Length = 259 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD V DP N+G ++RSA AF+ I K S + +S G+ H+ ++ Sbjct: 103 VLLLDGVQDPGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVRSMQGSQFHVRLHQVV- 161 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251 L +A+ + G+ +D + LE K K +ILG EG G+RP+ + Sbjct: 162 LEEAMASLRKAGYCLAATELNDQAQALETYNLKKRQKWGIILGNEGNGVRPEIIAASDIS 221 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G ++LNV+ A ++A++ HF Sbjct: 222 LYITMLGQAESLNVAIAGSIAMH----HF 246 >gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21] gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21] Length = 268 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 15/239 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQ 99 ++ E + +YG + A + I +L AT + L + A + V V + Sbjct: 30 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHV--VDSE 87 Query: 100 TIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR+ Sbjct: 88 ELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCA 146 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F I+ + A + + A G E+I + ++ AL + G+Q I +S + Sbjct: 147 YFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHN 205 Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + PL++ +K+ +L +++T + L P I LN++ A V L Sbjct: 206 KQGDPLDKVRLKNKVVFVLSESSTESLATSEDTQVRLT-LASP-IKSGLNIAVNAGVLL 262 >gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII] gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII] gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866] Length = 351 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 21/242 (8%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ + A + + A G E+I + ++ AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + + PL++ +K+ +L +++T + L P I LN++ A V Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVLSESSTESLATSEDTQVRLT-LASP-IKSGLNIAVNAGV 343 Query: 272 AL 273 L Sbjct: 344 LL 345 >gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 133 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 188 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 189 VAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 248 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 249 RALTDAVVRVPIHGKAESLNLATAAAVCLY 278 >gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 242 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 21/146 (14%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI- 192 +VLD V DP N+G +LR A F +I +K ++ + +S+ GA+ IP Y+ + Sbjct: 105 LVLDGVQDPGNMGTMLRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPVHYLDLA 164 Query: 193 SNLTDALQK-----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 S L D Q+ +H ++ + DS LI+G EGKG+RP+ + Sbjct: 165 SYLKDNQQQKFGAMLHGTNYKKVSYPKDS-------------ILIMGNEGKGVRPEIEAL 211 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + G ++LNV+ A A+ L Sbjct: 212 FDVPVTIPRYGEAESLNVATATAILL 237 >gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium] Length = 218 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 13/157 (8%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 S L AV+ + +++ D ++DP N+G ILRSA A ++ T + + + ++++G Sbjct: 60 SSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPKVVRASAG 119 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKG 239 A+ H+P I +++++ GF+ G SS ++ D KIAL++G E G Sbjct: 120 AMFHVPIIE----DVSVEEIRDNGFKVFGTSSHEQQGSIDFTTADLTGKIALLVGNEAHG 175 Query: 240 LRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 L + + A L +P G ++LNV+ A + + Sbjct: 176 L----DDNVSVDAWLTIPHRGRSESLNVAMACTLVCF 208 >gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 269 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 121 LLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LL +LD V + +LL V +P N G ++R A A D ++ + + Sbjct: 99 LLDDSLDRVLAAAPRLLAVGVEPREPGNAGTLIRCADAMGADAVVLLGDAVDPHNGKCVR 158 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------- 231 S++G++ H+P +R +++DAL + + G + ++D + L+ +I +D L Sbjct: 159 SSAGSIFHLPIVRERSVSDALSAIAAAGVCVLATAADGELILD-DISDDADGLLTRPTAW 217 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E GL Q A + + G ++LNV+ AA+ LY Sbjct: 218 LFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAATAAICLY 260 >gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 276 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+G ILR+A A G+I + + + + ++A G+L ++P++ Sbjct: 125 LYLALDRVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGV 184 Query: 194 NLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D ++ K + F +D E+ + ++LG E G+ + Sbjct: 185 DEEDLVRFAKENVLCFYAAACDTDGVTHFAAELSRPSL-VVLGNEANGVSERLLRAGQ-- 241 Query: 252 AHLHMP--GIIKALNVSNAAAVALY--ITQNHFA 281 HL++P G ++LNV+ AA LY I Q +A Sbjct: 242 -HLYVPMCGRAESLNVAAAATAILYEAIRQRKYA 274 >gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A G+ P E VL+ +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKEGMRVLSHTSAGARNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ +A+Q + G Q + + SD+ + A+ILG E G+ + Sbjct: 71 VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFREVDYTKPTAIILGGEKNGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 SMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 268 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 18/202 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148 P+ V +T+ ++ G + +H+GL A + AP P + + ++ + VL+ V D NIG Sbjct: 69 PIYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVSEILETAKTIAVLEGVGDHENIG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201 AI R A D ++ S + + +S ++ H+ + ++L LQ Sbjct: 126 AIFRHAAGMGVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQA 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + F I L+ + + E + DK+A+++GAEG GL + A + M Sbjct: 183 LADASFTLISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LNV+ AAA++ Y Q + Sbjct: 243 TDSLNVATAAAISFYERQRSLS 264 >gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 224 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 8/189 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV + + +K+ +E QG+ L + P ++ + ++ L+VLD + DP N+G ++ Sbjct: 36 PVFLLSRKCFEKVSVQEN-SQGVILLYS---YPVIEISKAAKQLIVLDDIQDPGNLGTMI 91 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210 R A I TK + + +S+ G++ H+ + + + L+ + + + + Sbjct: 92 RLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVR-LHVMEKKEILEYLQTENYHVLV 150 Query: 211 -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 L DS E ++K +K A + G EG G+ + E A + + G ++LNV+ AA Sbjct: 151 TTLQRDSVAYTEMQLK-EKNAFVFGNEGHGVSKEFLELAEQKIIIPISGQAESLNVAMAA 209 Query: 270 AVALYITQN 278 + L+ +++ Sbjct: 210 GIILFYSRD 218 >gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] Length = 264 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 1/183 (0%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV ++ + D+ ++ LA+ P T V+ LL+V D V DP N+G +L Sbjct: 73 PVLSIAEKLFDRTAFTDSPQGILAVAPRPKSDLTDLFVKKPALLLVADGVQDPGNLGTML 132 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A DG I + + ++A GA + + +N D L + G + Sbjct: 133 RSAAAAGADGAILLPGTVDATNPKALRAAMGAYFALSVVE-TNHQDCLSALAGHGVSLVT 191 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ ++ ++ N +A+++G EG G+ P E A S + M G +++LN + A +V Sbjct: 192 TAARAEVAYDRYDWNTPVAVVIGNEGSGVSPAMAEAAKSRVSIPMAGAVESLNAAIAMSV 251 Query: 272 ALY 274 + Sbjct: 252 IFF 254 >gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius ED99] Length = 248 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 21/181 (11%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 TV PQ I I+ K P +D Q+L +LD + DP N+G ++R+A Sbjct: 84 TVTPQGIFAIIEK----------------PQVDVTAAKQVL-ILDRIQDPGNLGTMIRTA 126 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213 A D I+ TK + + +++ G++ HIP I + D M S+ G + Sbjct: 127 DAAGLDLIVMTKGTADVYQDKVLRASQGSVFHIP---IQYVDDMSAWMSSFKGPIYGTAL 183 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + + D ALILG EG+G+ T + + G ++LNV+ AA V + Sbjct: 184 QDATTYHQVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLM 243 Query: 274 Y 274 + Sbjct: 244 F 244 >gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031] gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031] Length = 351 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ + A + + A G E+I + ++ AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGNPLDKVRLKNKVVFVL 307 >gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704] gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704] Length = 582 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 30/168 (17%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD + DP N+GAI+RSA F D I + R S SAV K+++GA E++P I I Sbjct: 376 FILLLDGILDPGNLGAIIRSAYFFGADAIAFSSRNSAPLSAVTIKASAGAAENMPLISIH 435 Query: 194 NLTDALQKMHSWGFQTIGLS------SDS---------KKP------LEQEIKNDKIALI 232 + + G++ DS K P L E + L+ Sbjct: 436 DPATFIDTSRGNGWRFFAAEPPASTFDDSQAQVDTMLTKTPILSPHNLSAEPRKSPCVLM 495 Query: 233 LGAEGKGLRPKTQETATSMAHL---------HMPGIIKALNVSNAAAV 271 LG+EG GL + A + + P + +LNVS A+A+ Sbjct: 496 LGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASAL 543 >gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] Length = 234 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A G+ P E+ VL+ +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKENMRVLSHTSAGARNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + N+ DA+ + + G Q + + SD+ A+I G E G+ + Sbjct: 71 VELDTHDNMVDAITHLKAQGMQVLATNLSDTAIDFRDVDYTKPTAIIFGGEKNGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQ 162 >gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 187 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 4/141 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF + Y+ + VL KS++ A + + Sbjct: 11 RQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLY--YTDTAFPVLGRKSSASARKWVD 68 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R S+ ++ + G + + S + + KPL A+I+G E G+ P+ E Sbjct: 69 TVRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSGVAPELVEL 128 Query: 248 ATSMAHLHMPGIIKALNVSNA 268 ++ M G+I++ NVS A Sbjct: 129 VDGEVYIPMYGMIQSFNVSVA 149 >gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM 2228] Length = 269 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 50/291 (17%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+IS +++KI + KL R SR+ + L G + AA Sbjct: 1 MNIISSSQNDKI-----KYLNKLYR--------------SRNRRKEGVFILEGKRLIEAA 41 Query: 61 LNNPSR--------KIFQLLATKNALARLDWDANLPH------PFPVKTVPPQTIDKIVG 106 L + F+ A + LA L +A+L + TV PQ I +V Sbjct: 42 LAGGADFKQVFLTPAFFKSAANEKLLAALKLEADLIYLEEKLLKETASTVNPQGILAVV- 100 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +E+V +G D + +++LD + DP N+G I+R+AVA DGII K Sbjct: 101 EESVFKGQ------------DFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALK 148 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQE 223 + + +S G + I + + + L ++ L++D + E + Sbjct: 149 GSVDIYNQKVIRSTMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEEYHFEHQ 208 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ K+ L++G E GL P+ A + + + G I++LN + AA+V + Sbjct: 209 YQS-KLILMIGNEANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAF 258 >gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii] gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii] Length = 321 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 19/163 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG------A 183 N L++LD + DP N+G +LR+A AF+ DG+ + P L S + A Sbjct: 160 NPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIA 219 Query: 184 LEHIPYIRISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGA 235 P I+ +A+ +++HS + +S + L ++IK++K + L+LG+ Sbjct: 220 AGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHS---KKNSPEALIEKIKSEKSLCLVLGS 276 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG+GL + + + + MPG ++LNV+ + +++ N Sbjct: 277 EGQGLSDPARRGSQHLT-VPMPGKFESLNVAVVGGILMFLLMN 318 >gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 264 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 100/196 (51%), Gaps = 15/196 (7%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L P+ V P+ + K + + HQ + A+ P + +LD + ++ L++LD V DP Sbjct: 70 LKADLPLTQVTPE-VAKALSQTDHHQDIFAVANIPQ-AKSLDIDQLTKGLLILDQVQDPG 127 Query: 146 NIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 N+G ++R+A AF G+ T Y+ + +S G+ + + +L + + + Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDK----VLRSMQGSHFAVNTYEV-DLVEVIPQ 182 Query: 202 MHSWGF--QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G+ T L++ +K ++K+ K AL++G EG G+ T + A + ++ M G Sbjct: 183 LQEAGYFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSG 242 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ A A+ +Y Sbjct: 243 SAESLNVAVAGAIVMY 258 >gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 369 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+ LD R L++LD+V +P NIG I+R+ + G+I + +A + + A Sbjct: 215 LTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCAFYGVKGVIVDNAELLNSAAAM-RVAE 273 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G +E+I ++ + DAL K+ G+Q + +++ + +++ K + + E + Sbjct: 274 GGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVFVLTESEN-- 331 Query: 242 PKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273 P ++ + +L +K LNV+ AA V L Sbjct: 332 PALVQSGDEVINLSFANPLKTGLNVAVAAGVLL 364 >gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM] Length = 264 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP + +++ K HQG+ + + +++AV + L++LD + D N G Sbjct: 72 VPIEKLNRFTRKN--HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFG 129 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A D II ++ + ++ K+++GAL ++ + NL + + G Sbjct: 130 AICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVS 189 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + ++K + AL++G E KG+ + + L + G ++LNVS A Sbjct: 190 VFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 249 Query: 269 AAVALY 274 LY Sbjct: 250 CGAILY 255 >gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 261 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 28/253 (11%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP----PQ 99 +Q +F GVH V +L + ++ T+ + + N K +P + Sbjct: 21 TQRRKIFFEGVHLVETSLVSDYVFTEKVFVTEKFIEK---QKNFLEILQEKKIPVIIISE 77 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K + QG+ A ++ + N +++ D + DP NIG I+R+A AF Sbjct: 78 KVAKTISDTVTPQGV-FAIADFKIKNINDLSNPTFIVIADRIQDPGNIGTIIRAAEAFGA 136 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--------- 210 + ++ T S ++++G++ +P I+++ + + + + +G + Sbjct: 137 EAVLVTHGTCNPFSNKALRASAGSIFFLPVIKVT-VKEIEEFVSKYGLNLVITDLKATIS 195 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + D KPL A++ G E KG+ + + + G ++LNV+ AA Sbjct: 196 SFNMDFTKPL---------AIVFGNESKGVSQDLRAIKHTSCKIPHKGKAESLNVAMAAT 246 Query: 271 VALY-ITQNHFAK 282 LY I + F K Sbjct: 247 AILYEILRQRFLK 259 >gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1] gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1] Length = 351 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ SA + A G E+I + + AL ++ G+Q I + Sbjct: 227 TCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307 >gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421] Length = 265 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 R+ LL++ + + DP N+G ++RS A DG++ + P VL ++++G P Sbjct: 110 RDVSLLVLGERLQDPGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVL-RASAGLWFRSP 168 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + +LT + + G Q + + + + L + A +LG+EG+GL + Sbjct: 169 PLSVPDLTACVADLVRRGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCL 228 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + +++LNV+ + A+ L+ Sbjct: 229 PERVGIPLAPGVESLNVAVSGALLLF 254 >gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 258 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP + +++ K HQG+ + + +++AV + L++LD + D N G Sbjct: 66 VPIEKLNRFTRKN--HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A D II ++ + ++ K+++GAL ++ + NL + + G Sbjct: 124 AICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVS 183 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + ++K + AL++G E KG+ + + L + G ++LNVS A Sbjct: 184 VFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 243 Query: 269 AAVALY 274 LY Sbjct: 244 CGAILY 249 >gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 270 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSAS 181 SP L +R L +V++ + DP N+G+++R A DG+ ++ P VL SA Sbjct: 107 SPPLSKLR---LGLVVETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAG 163 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKG 239 P + + +L +Q G Q + LS + +Q++ + +LG EG G Sbjct: 164 QWFRRPPQV-VPDLAAWIQSCRCHGIQVLAATLSPTANCYWDQDLTRPTL-FLLGNEGAG 221 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 LR T + A + + M +++LNV+ + LY Sbjct: 222 LREATIQQADAQVRIPMAEGVESLNVAMTGGLLLY 256 >gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 276 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V+D + P N+GA+LR+A + T + E+ + +S+ G++ +P +R + Sbjct: 126 LVLVVDGLEKPGNLGALLRTADGVGAAAVFATGAGTDFENPNVIRSSMGSVFSLPTLR-A 184 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + + GF+ + + + + AL+LG E GL E A Sbjct: 185 PAAELLAWLRAQGFRLVAATPHADTLFWDAPYTGRTALLLGTEHDGLSALWLEAADVRVT 244 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G+ +LNV+ A A+ LY Sbjct: 245 IPMGGLADSLNVATAGALLLY 265 >gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 272 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL P D ++ +VLD V DP N+G+ILRSA A I+ + + + + ++ Sbjct: 106 PLQGPAPDMQADT---VVLDGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAWAPKTLRA 162 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A GA + + +L L T+ +S S L +A + G+EG G Sbjct: 163 AMGAHFQLDVLEHCDLPAFLSAYRGQPVATLLGASTS---LYGADLAGPVAWVFGSEGLG 219 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +RP + MPG ++LNV+ AAAV L+ T Sbjct: 220 VRPAVAALTRLQVRIPMPGPSESLNVAAAAAVCLFET 256 >gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI 77-13-4] gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI 77-13-4] Length = 710 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 74/292 (25%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVPPQT--- 100 FLYG V AAL RK++ L R + D P+ VP + Sbjct: 312 FLYGRSVVKAALEQGRRKLYNLYIYGGENRRDNKDNTFLSRLAEKQGVPITIVPTEEQRL 371 Query: 101 IDKI-VGKEAVHQGLALETAPLLSPTL----------------------------DAVRN 131 +DK+ +G+ H G LE +PL P L +A+ Sbjct: 372 MDKMSMGR--PHNGFVLEASPL--PQLPIRSLGKLEETPARLGFHVALDFQTKEEEAING 427 Query: 132 SQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 ++ +++L+ + DP N+G I+R+A D + T R S + + V K Sbjct: 428 TESFFRRANDVMPKPFVLLLNEIMDPGNLGGIIRTASYLGIDAVGITSRGSSTLTPVALK 487 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-----EQEIKNDKIA--- 230 SA+GA+E I + + ++ G++T + + L ++ I D I Sbjct: 488 SAAGAVEEISLFTVDDPLRFIEDSRKAGWKTFAAVAPPDRKLVRKHGDKFISTDVIEANS 547 Query: 231 --------LILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAV 271 L+LG EG GL + A S+ I +LNVS AA + Sbjct: 548 PLNEHPCLLVLGNEGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGL 599 >gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 436 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V N+P N G ++R A A D ++ +S A+S++G+L HIP R Sbjct: 213 KLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARE 272 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATS 250 N+ + + G ++D + L +++ + A + G E GL + Q A Sbjct: 273 RNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADY 332 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G ++LN++ AA++ L+ + + AK Sbjct: 333 RVRIPIRGRAESLNLATAASICLFESSKYQAK 364 >gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 309 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL +V DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 145 KLVAVLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 200 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + +A++ + G + + L+ E+ + A + G E GL +T Sbjct: 201 VAVGVPVEEAVEGLRRAGVRILAADGAGTDDLDAELDKGTMGGPTAWVFGNEAWGLPEET 260 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 261 RALADAVVRVPIHGKAESLNLATAAAVCLY 290 >gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189 L ++LD V DP N+G ILR+A F G + +SP + +++ GAL + Sbjct: 104 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASXGALARVQP 159 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243 + N D L G G D + E + N + L+LG+EG+G+ P+ Sbjct: 160 TPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAE 219 Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271 T + L + G ++LNV+ A A+ Sbjct: 220 ITDRLTIPASGLSVKGHTESLNVAIATAI 248 >gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] Length = 265 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V + P NIGAILR+A A S D +I S + + +S+ G + I ++ Sbjct: 117 LILVAEAPEKPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVGCV-FTTEIAMA 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + DA+ + + F +P + A+++G E GL ++ AT Sbjct: 176 SSNDAILYLQKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNIS 235 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G+I ++NVS AA + ++ Sbjct: 236 IPMHGVIDSMNVSVAAGILIF 256 >gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20] gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW] gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424 gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20] gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW] Length = 351 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%) Query: 96 VPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +L Sbjct: 167 VDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVL 225 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F I+ SA + A G E+I + + AL ++ G+Q I Sbjct: 226 RTCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLEADYIDSALMQLRKSGYQIIH 284 Query: 212 LSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKA-LNVS 266 +S + + PL++ +K+ +L T+ AT + A L + IK+ LN++ Sbjct: 285 VSHNKQGDPLDKVRLKNKVVFVLSESS------TESLATPEDTQARLTLASPIKSGLNIA 338 Query: 267 NAAAVAL 273 A V L Sbjct: 339 VNAGVLL 345 >gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6] gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus CMCP6] Length = 228 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ DA+ + + G Q + + SDS Q A+ILG+E G+ + + Sbjct: 73 VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A AV LY Q Sbjct: 133 ADQDIMIPMVGMVQSLNVSVACAVILYEAQRQ 164 >gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 168 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +A ++++VLD + HN+G I R A A + + + T + L K+A G E Sbjct: 12 EASEKVEVIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEF 71 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + +A+ + G++ + + DS + + + K A + G E G++ +T Sbjct: 72 VNCEHFDHSLEAVGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQETL 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E L+ G ++NVSN AAV L+ Sbjct: 132 EACDEYIRLNAHGRKNSINVSNCAAVVLF 160 >gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEHIPYIRI 192 L+ VLD++ N+G+I R+A + I Y+P + + K+A G E++ + Sbjct: 108 LVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCG-YTPLPTQWKVEKTAMGTQEYLAWEEA 166 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L + L+++ G++ + L ++ S L ++ +++ A +LG E GL P+ + + Sbjct: 167 PKLLECLEELKDEGYRIVALETAASASDLFEKFESEPTAFVLGNERFGLDPEVLKIIDEV 226 Query: 252 AHLHMPGIIKALNVSNAAAVA 272 + + G +LNV AAVA Sbjct: 227 RIIPLRGRKNSLNVGVTAAVA 247 >gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa] gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa] Length = 359 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 12/153 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP----- 188 ++VL+ + DP N+G +LRSA+A G+ + P S VL +++ GA IP Sbjct: 202 ILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVL-RASRGASFQIPIVSGS 260 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKT 244 + + L D Q G S L Q + + + L+LG+EG GL K Sbjct: 261 WYHLEALKDEYQMKMLAGHPDCNDKSRPVSQLSQGLADCFARVPLCLVLGSEGHGLSEKA 320 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q ++ + M G ++LNV+ A + LY+ Q Sbjct: 321 QRECELLS-IPMAGEFESLNVAVAGGIFLYMLQ 352 >gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] Length = 258 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106 L G H A L +K+F L T+ AL D + + H F + V + + + Sbjct: 35 LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + LA+ P + T+D ++ ++L++V DP N+G +LRSA A + II T+ Sbjct: 94 TLSC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + LTD L K F T SS L + + Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G E A S+ + PG ++LNV+ A ++ + Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251 >gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 254 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 56/268 (20%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ + + G H V AL S K ++LAT+ AL+RL A L + Sbjct: 19 QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138 +G ++ + ++ L + +NSQ + ++L Sbjct: 69 -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL 115 Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194 D + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ I+ ++ Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170 Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L DA+ + + L + K L ++ALI+G E G+ P+ + A + Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLY 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G ++LN + AA + +Y HF+ Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254 >gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] Length = 241 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++LD V+ +NI A+LRSA A + + S V +ASG+ + + Sbjct: 16 RQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQLHAV--WPESAMRVSGNTASGSQQWVKT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 +R +TDA+ + + G Q + + +EI K A++LG E G+ + A Sbjct: 74 LRHQTVTDAITALKADGMQVVVTNFSPNAKDFREIDYTKPTAIVLGHEKNGVSDEAVRLA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G++++LNVS A A+ L+ Sbjct: 134 DAEVIIPMVGMVQSLNVSVAGALVLF 159 >gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis MSMB43] Length = 262 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK+++S + + L G+H SA L+ + ++ T ALA + Sbjct: 7 RDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALAHAEAR 65 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLL-----SPTLDAVRNSQLLM 136 + P V T+P D + G+ + V G+ L LL +P L A R + + Sbjct: 66 EIVARIEPARVVTLP----DALFGQLSNVVNGVGL----LLLVARPAPALPA-RVADTSV 116 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V D N+G+ILRSA A + + + S+ + +SA GA H + I Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDI 173 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 DA + S + + +A + G EG G+ + ++ AT + Sbjct: 174 DAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533] gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533] gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 253 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 30/266 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLY-VLGTAEALKKLDTTY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136 L +K++ +A+ Q L+ P+ P + + + Sbjct: 66 KLKD------------NKVIQITDAIAQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD++ DP N+G I+R+A A DG++ ++ + + +S G+ HI I+ + + Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171 Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A+ G + + + K L ++AL++G E G + ETA ++ Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIP 231 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HF+ Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253 >gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 276 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 1/156 (0%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L ++ + S L++ NDP N+G I+R A +I ++ +S++ Sbjct: 117 LEEAIEVGKQSGCLVIPVECNDPGNVGTIVRMTDALGAGAVILAGDSVDPLNSKAVRSSA 176 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGL 240 G++ H P R ++ ++++ GF T+ + D L + + + +A + G E GL Sbjct: 177 GSVFHTPVARERDIDVVVERVREAGFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHGL 236 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A + + + G ++LN++ AAA+ L+ T Sbjct: 237 SEEITASAGASVAIPIKGEAESLNLATAAAMCLWET 272 >gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM 14977] gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM 14977] Length = 258 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V + P N+GA+LRSA A D ++ E+ + ++++G + +P + + Sbjct: 111 VLVAVEIEKPGNLGAMLRSADASGADAVLVVGEAVDPENPNVIRASTGTVFTLPLAAVDH 170 Query: 195 LTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 DA + + G Q + + +++ + + A ++GAE +GL P E A Sbjct: 171 --DAARAWLRERGLQIVAAAPRARRVYWEADLSGPTAFVVGAEDRGLPPGWLEAADLAVR 228 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G+ +LN S +AA+ LY Sbjct: 229 IPMEGVADSLNASVSAALLLY 249 >gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 259 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 118/276 (42%), Gaps = 38/276 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+K++ +++KK+Q+ +K R Q L G H V+ AL R + Sbjct: 3 EKLTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEALQ-ADRGLH 50 Query: 70 QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119 +L+ TK LA D A + V +TV PQ I + +HQ Sbjct: 51 ELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQ------- 103 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 A S + LD V +P N+G ++R+A A G++ + S + +S Sbjct: 104 -------VATDLSGAWLFLDRVQNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + + G+ G + + K AL++G EG+ Sbjct: 157 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 215 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + T+ ++ M G ++LNV+ +A + ++ Sbjct: 216 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 251 >gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 268 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V+D V D NIGAI RSA A D ++ T+ + + + G++ +P+ + Sbjct: 126 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWL-- 183 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSM 251 D+ + S G+QT ++ +D L+ + + +++A I+G EG GL +T A Sbjct: 184 --DSYDTLRSLGYQTAAMALTDKSISLDDPVLKQQERLAFIMGTEGDGLPQQTITNADFT 241 Query: 252 AHLHMPGIIKALN 264 + M + +LN Sbjct: 242 VRIPMSHQVDSLN 254 >gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 241 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+ + DP NIG I R A +F D +I +E + +S+ GA+ + I+ ++ Sbjct: 97 IIALNKLQDPGNIGTIFRLAKSFGFDSVIVENIDIYNEKII--RSSQGAMFSLNIIKTND 154 Query: 195 LTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L+ L F + L+ +S K + + +N KI ++LG EG G+ K + S Sbjct: 155 LSKELSAFKKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDEKIID--LSDF 212 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 ++++P ++LNV+ A+ + Sbjct: 213 NVYVPIEFESLNVACCGAIIM 233 >gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] Length = 246 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD + D N G+++R++ D II T + ++ K++SG L +P + + Sbjct: 98 LLLILDSITDVRNFGSLVRTSACTGVDAIIITNYNIVNSDSI--KTSSGGLFKVPICKEN 155 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + + G Q I ++ + + A ILG E KG+ + Sbjct: 156 NIIKIIKFLKNSGIQVIAVTEKTNSICYNINYRNPTAFILGNEEKGISKNYLSICNNTVK 215 Query: 254 L-HMPGIIKALNVSNAAAVALY 274 L + + +LNVS A LY Sbjct: 216 LPLLKNSLSSLNVSVACGAILY 237 >gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] gi|89517831|gb|EAS20487.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] Length = 175 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++D R S L++VLD+V +NIG++ RSA A+ + I + + K+A Sbjct: 13 SVDRFRESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTAL 72 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKG 239 GA E + + + D +++++ G T + + DS + K+A+++G E KG Sbjct: 73 GATETVAWEYRDHTIDIIKELNEQGVTTCAIEQAEDSVSLRGFKPSTKKVAVVMGNEVKG 132 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + ++ ++ L G +LN+S + +Y Sbjct: 133 VQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIY 167 >gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 271 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L+ VL HV DP N G +LR+A A D ++ T + +S +G+L H+P Sbjct: 108 RRPRLVAVLAHVRDPGNAGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLPV 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEG 237 + L DA+ + S G + + + L+ + + A + G E Sbjct: 168 VPGPELPDAVGALRSAGLTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAWVFGNEA 227 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GLR + A + + + G ++LN++ AA V LY Sbjct: 228 WGLRDEDLALADATVRVPLRGRAESLNLATAATVCLY 264 >gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15] gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15] Length = 283 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 42/186 (22%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ +D V D N+GAI RSA D ++T R + S + K+++GA E +P ++ Sbjct: 93 LILYVDGVLDEGNLGAIARSAYFLGVDAVVTPTRQTAPWSHIAVKASAGAAEAVPLFKVG 152 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIA-------------------- 230 D L K G++ + P+ E+E + KI Sbjct: 153 EPADFLGKSSRAGWRIYASDAIPPPPVTSGEKEEPSSKIVYSVARSTKRLPSDHCPVAEH 212 Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGI----------IKALNVSNAAAVALY-IT 276 L++GAEG GLR ++ ++AH + GI + +LNVS AA++ Y + Sbjct: 213 PTILMMGAEGTGLR----DSLLNLAHYKV-GIKHGREVDEIGVDSLNVSVAASILSYEML 267 Query: 277 QNHFAK 282 Q AK Sbjct: 268 QKPIAK 273 >gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] Length = 229 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R + L ++L+HV PHN+ AILRS CD + + + S + +A G+ + Sbjct: 18 RMADLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHIVSLQGRTRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + A+ + GF+ G L ++K + + A +LGAE GL + Sbjct: 73 VPLNDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCDFTG-PTAFVLGAEKWGLTDRA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M G++++LNVS A A L+ Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161 >gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 270 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P D + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G+ Sbjct: 121 PQYDVSKAQQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRASQGS 179 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + HIP + D M+++ G + ++ ++ AL+LG EG+G+ + Sbjct: 180 IFHIPVVT----EDLATYMNNFDGPVYGTALENAVSFKEIEAQSTFALLLGNEGEGVNQE 235 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 236 LLQQTTKNLIIPIYGKAESLNVAIAGSILLY 266 >gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 268 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 12/253 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWD-AN 86 D++ + S +++ S + GV V L SR LL T L L D A Sbjct: 14 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLA--SRFSPRALLGTDRRLLELKEDLAG 71 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPH 145 + P+ V P + ++VG +++G+ + ++ P++ V ++ + VL+ VND Sbjct: 72 VGAPY--YRVSPDVMAQVVGFH-LNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHE 128 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+ +I R+A +I + + + G +PY R ++ L + Sbjct: 129 NLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKER 188 Query: 206 GFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+ + L+ D++ E + + +AL++GAEG GL + + M Sbjct: 189 GFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTD 248 Query: 262 ALNVSNAAAVALY 274 +LNV+ AAA+A Y Sbjct: 249 SLNVATAAALAFY 261 >gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 212 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186 R L +++D+VN HN+ AI+RS CDG+ + ++ S ++ AK +A+GA + Sbjct: 5 RQPDLTVIMDNVNKAHNLSAIIRS-----CDGVGIDEIHAVSYRKSIYAKQNAAAGASKW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ A +K+ + G Q + + + AL++GAE G+ + Sbjct: 60 LTLTLHPDIASAYRKVSACGMQILVATGKEGSRDFRAIDYTVPTALVMGAEWDGISEEAI 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G++++LNVS A AV L+ Q A+ Sbjct: 120 KGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAE 156 >gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH] gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH] Length = 234 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 95 TVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG + Sbjct: 49 VVDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGV 107 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+ F I+ + +A + + A G E+I + ++ AL + G+Q I Sbjct: 108 LRTCAYFGVKNIVADNVENLYSAASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQII 166 Query: 211 GLSSDSK-KPLEQEIKNDKIALIL 233 +S + + PL++ +K+ +L Sbjct: 167 HVSHNKQGDPLDKVRLKNKVVFVL 190 >gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis Bt4] gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 262 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + L G+H SA L+ + ++ T AL+ + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALSHAEAR 65 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDAVRNSQLLM 136 + P V T+P D + G+ + V G+ L AP L R S + Sbjct: 66 ETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPAPALPE-----RVSNTSV 116 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V D N+G+ILRSA A + + + S+ + +SA GA H + I Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDV 173 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 DA + S + + +A + G EG G+ + ++ AT + Sbjct: 174 DAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] Length = 176 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + A + K+A GA + + ++ Sbjct: 26 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAEFTVDWKYVN 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + + G+ + + E+ KN K A+++G E KG++ + + + Sbjct: 86 NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIVMGNEVKGVQQEVIDHSHG 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169 >gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] Length = 278 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DP N+G I+R+A + + D +I TK P S L ++ GA+ H+P I+ Sbjct: 122 FFVILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTL-RATMGAIFHMPIIQC 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L + + I D+ K N I +I+G E G+ Sbjct: 181 DD-DRWLDDLKENEVKLIAADLDTDKTYIDIDYNTSIGIIIGNEANGISEALLSKVDQRV 239 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + G I++LN S AA++ +Y Sbjct: 240 IIPILGKIESLNASVAASILIY 261 >gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella anatipestifer DSM 15868] gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella anatipestifer DSM 15868] Length = 258 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 7/171 (4%) Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + +++AV + L++LD + D N GAI R+A D II Sbjct: 79 HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAII 138 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 ++ + ++ K+++GAL ++ + NL + + G + ++K + Sbjct: 139 IPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVSVFSATEKAEKLIYDV 198 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G E KG+ + + L + G ++LNVS A LY Sbjct: 199 DFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILY 249 >gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 291 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 VL+ V +P N+GAI RSA A DG++ T S + + G + +P+ + Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200 Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + GF+T + + D P+ +E D++A+ILG+EG GL P+T Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQT 254 >gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 270 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 17/253 (6%) Query: 40 SRHTSQPENLFLY-GVHTVSAALNNP--------SRKIFQLLATKNALARLDWDANLPHP 90 SR + E FL GV V ALN+ R+I + T+ A L+ + Sbjct: 17 SRRFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITE---TRRGEALLEKASF--QG 71 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ V ++ G LA+ +S L A LL+++D V DP N+G Sbjct: 72 VPLVEVDESLFGELAGTTTPQGALAVVKKGKVSLEDLQAGGEPALLVIVDGVQDPGNLGT 131 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA A G+I K + +A ++ GA+ ++P ++ +A+ + G + Sbjct: 132 IVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVEAMTYLKQLGIKA 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + K + AL+LG+E G + MPG ++LNV+ ++ Sbjct: 192 VAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMPGRAESLNVAVSS 251 Query: 270 AVALY--ITQNHF 280 AV L+ + Q F Sbjct: 252 AVLLFEAVRQRCF 264 >gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1] Length = 196 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187 R L +VL +++DPHN+ AI RS AF G+ Y + ++ K+++ A + + Sbjct: 20 RQKDLTLVLANIHDPHNVSAIYRSCDAF---GVAQVHLYYTDTAFPSLSGKTSASARKWV 76 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +R + + + + G Q + S S KP+ A+I+G E G+ + + Sbjct: 77 DTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVD 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G+I++ NVS AAA+ L Sbjct: 137 VVDGEVYIPMYGMIQSFNVSVAAAILL 163 >gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03] gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03] Length = 248 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 21/181 (11%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 TV PQ I I+ K P +D Q+L +LD + DP N+G ++R+A Sbjct: 84 TVTPQGIFAIIEK----------------PQVDVTAAKQVL-ILDRIQDPGNLGTMIRTA 126 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213 A D I+ TK + + +++ G++ HIP I + D M S+ G + Sbjct: 127 DAAGLDLIVMTKGTADVYQDKVLRASQGSVFHIP---IQYVDDMSAWMSSFKGPIYGTAL 183 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + + D ALILG EG+G+ T + + G ++LNV+ AA + + Sbjct: 184 QDATTYHQVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGILM 243 Query: 274 Y 274 + Sbjct: 244 F 244 >gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 262 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + +S+ ++L+++ D NIG I+RS AFS DG+I + + +SA G+L Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P I + +A+ + GF SD L +E K A+++G EG G+ Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTV 226 Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271 ++ L +P ++LN S AA+V Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252 >gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 262 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + +S+ ++L+++ D NIG I+RS AFS DG+I + + +SA G+L Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P I + +A+ + GF SD L +E K A+++G EG G+ Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTV 226 Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271 ++ L +P ++LN S AA+V Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252 >gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 274 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSA 154 V KI +E HQG+ P L D + N+ L++VL+ + P N+GAILR+A Sbjct: 87 VSKAVFQKIACREN-HQGILALAKPKLHLLADLNLSNNPLIIVLESIEKPGNLGAILRTA 145 Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 A D I +T Y+P+ + +S+ G L P I +++ + L + S Q Sbjct: 146 EAAKIDATIICNPSTDIYNPN----VVRSSIGCLFSNP-IAVASNEETLAYLKSKSVQIF 200 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K A+++GAE GL + A + M GII +LNVS + A Sbjct: 201 AAELTAFKQYYNTDFTSASAIVIGAEVNGLTNFWLDNAHQRIKIPMQGIIDSLNVSVSVA 260 Query: 271 VALY 274 + + Sbjct: 261 IITF 264 >gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 248 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G++LRS+VAF I+ ++ + ++++GA+ H + L D Sbjct: 115 QDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAGAVFHCRFFAGPRLEDIFHL 174 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + Q + LS++ KPL + + +D L+ G EG G+ + +E + S+ M ++ Sbjct: 175 PYPG--QIVSLSAEG-KPLAETVFSDPTMLVPGIEGAGIPARWREQSVSIP---MDAGVE 228 Query: 262 ALNVSNAAAVALY 274 +LN + A ++ LY Sbjct: 229 SLNAAVATSIVLY 241 >gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae] Length = 298 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/195 (22%), Positives = 89/195 (45%), Gaps = 13/195 (6%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150 PV +V +T+ ++ G + +H+GL + ++ A+ ++ +++L+ V D NIG++ Sbjct: 98 PVFSVDRETLAQVAGFD-MHRGLLASADRVAGMSIAQAIDGARTVVILEGVGDHENIGSM 156 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWG 206 R+A D ++ + + + + G + P+ + LQ++ G Sbjct: 157 FRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKSTTWQRELQELRDAG 216 Query: 207 FQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 F + L+ + + + D K+AL++GAEG GL A + M Sbjct: 217 FHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEHAMRATDQRARIPMASG 276 Query: 260 IKALNVSNAAAVALY 274 +LN++ +AA+A Y Sbjct: 277 TDSLNLATSAAIAFY 291 >gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] Length = 257 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+++ L++LD + DP N+G I+R A II TK + + +S+ G++ H+ Sbjct: 103 RDARQLIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNL 162 Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + D L+K + L DS +E + +++ A + G EG G+ + E Sbjct: 163 HTMEKIEIVDYLKK-QQYNIVVTSLQEDSIPYMEMSL-DERNAFVFGNEGHGVSKEFLEI 220 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + G ++LNV+ A + L+ +++ Sbjct: 221 ADEKVIIPISGQAESLNVAMALGILLFYSRD 251 >gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] Length = 296 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R+++ + V+ V D NIGAI RSA A D I+ + + + + G++ Sbjct: 143 EVCRDARRVAVIHGVVDTTNIGAIFRSAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFL 202 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKN-DKIALILGAEGKGLRPK 243 +P+ + +L++M GF T L+ +D P++ E+K ++A+++G E GL + Sbjct: 203 VPWTWLPRPVSSLREM---GFCTASLALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAE 259 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M + +LNV+ A+AVA + Sbjct: 260 VLSESDYVVRIPMWHGVDSLNVAAASAVAFW 290 >gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella rochalimae ATCC BAA-1498] Length = 271 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ VP + +D I G VH+G+ + P L L + L+ VL +++ ++ Sbjct: 78 PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESM 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A AF+ GII K +++SGA +PY R ++ + + + F Sbjct: 137 GAIFRNAAAFASTGIILDKTSCDPLYRKSIRASSGAALSVPYTRGDDIESIITALSNANF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + LS + L+ ALI G EG L Sbjct: 197 KLYTLSPSATCYLKDAKATKHTALIFGIEGNDL 229 >gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207] gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207] Length = 258 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD + +P N+G I+RS A G++ + SA++ K+++G + +R + Sbjct: 116 LIALDGITNPQNLGMIIRSITASPAYGLLLPSKGCADISALVIKASAGTVFKGNILRCES 175 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L AL GF+ LSS PL + I +LG E +G+ + + + Sbjct: 176 LAKALPAFIEKGFEVCTLSSHQATPLAEFKPQAPIIYVLGNETEGVSKEIAALSKHRVGI 235 Query: 255 HMPGIIKALNVSNAAAVALY 274 M +++LNV+ AA+ + Sbjct: 236 PMANGVESLNVAITAALIAF 255 >gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 253 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 30/266 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136 L DK++ +A+ + L+ P+ P + + + Sbjct: 66 KLKD------------DKVIQITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD++ DP N+G I+R+A A DG++ ++ + + +S G+ HI ++ + + Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQ-NPIL 171 Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A+ G + + + K L I ++AL++G E G ETA ++ Sbjct: 172 AAISSFKENGIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIP 231 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HF+ Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253 >gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 260 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 ++LD + DP N+G ++R+A II T Y+P + +S G++ +P+I Sbjct: 113 FLILDSLQDPGNLGTLVRAAEGAGITCIIMNENTVDIYNPK----VIRSTMGSIFRVPFI 168 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + +L + K+ S + S + ++ IA ++G E G+ + Sbjct: 169 YVKDLKKVIDKLQSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEK 228 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A ++ +Y Sbjct: 229 KIKIPMLGEVESLNAAVAGSILMY 252 >gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] Length = 277 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V+D V DP N+G++LR+A A + + + + S ++ GA + + +RI Sbjct: 121 LIVVDGVQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAGMGA-QFV--VRIEE 177 Query: 195 LTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L ++ S+ G + PL + +A + GAEG+GL P A Sbjct: 178 GCELLARLESYPGLCLATALREDAHPLYELDLRGPVAWLFGAEGQGLSPALLARADGCVI 237 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M I++LNV+ AAAV L+ Sbjct: 238 IPMTAGIESLNVAAAAAVCLF 258 >gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] Length = 229 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D V PHN+ AI+RS AF+ + + Y ++ A G+ +++ Sbjct: 16 RQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNVVWPYDDYQT--FRGRAMGSQQYVNV 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 +++ A+Q G+Q + + +I K A+++GAE G+ K + Sbjct: 74 KTHKDVSQAIQGFKQQGYQIVAAHFCDQAVPHYDIDYTKPTAIVMGAEKNGVSAKAMDLV 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G++++LNVS AAA+ L Sbjct: 134 DHSIIVPMEGMVQSLNVSVAAALIL 158 >gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 280 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL +V DP N GA++R+A A D ++ T S + +S +G+L H+P + Sbjct: 120 RLVAVLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTG 179 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEGKGL 240 L + + + G QT+ L++ + A + G E GL Sbjct: 180 VPLDQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G+ ++LN++ AA V LY Sbjct: 240 TEDERGLADAVVRVPIRGLAESLNLATAATVCLY 273 >gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 163 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L+ ++ + +++L ++D NIGAI R+A A +I E + +++SGA Sbjct: 10 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLAMEGVI--RTSSGA 67 Query: 184 LEHIPYIRISNLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +P I ISN DAL ++ GF K+ +I N K L+LG+EG GL Sbjct: 68 ALDLP-IVISN--DALSLINELKQVGFYFYASDGSGKEIHSVKISNGKKVLVLGSEGFGL 124 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 K + + M +LNVS A A+ Sbjct: 125 SSKIVKKCDECVGIAMKNNFDSLNVSAAFAI 155 >gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] Length = 274 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 16/258 (6%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV---SAALNNPSRKIFQLLATKNALARL 81 R+H K++ + S++ + L G+H + + L P L+ +++ A Sbjct: 7 RDHPLIKRLIKLEESSQYRKRTGLTLLDGIHLIQIHCSILGKPE----NLIVSESYFADT 62 Query: 82 D----WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLM 136 D D + P T+ ++ + + G LAL + P L R L + Sbjct: 63 DNKHFMDIIFGYKPPKITIVGDSLFRAISPVKTPTGILALISKPALQGNTH-TRKEVLSV 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L+ + DP N+G+ILRSA A + I +K + + S ++A GA + SNL Sbjct: 122 LLETIQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFLHIYENSNLK 181 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 Q+ I S + K L + A + G EG GL + + A + M Sbjct: 182 QIAQQFPG---TVIATSIQATKNLFEISLAGPTAFLFGNEGAGLSAEMIQAAHLNIAITM 238 Query: 257 PGIIKALNVSNAAAVALY 274 PG ++LNV+ AAA+ + Sbjct: 239 PGKTESLNVAAAAAICFF 256 >gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] Length = 268 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+VLDH+ DP N+G ++R+A+A D + + P + VL ++++GA +P R Sbjct: 111 FLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPWQPKVL-RASAGATLALPLKRFL 169 Query: 194 NLTDALQKMHSW-GFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGLRPKTQE 246 LQ + G Q + + +P Q L LG EG GL P + Sbjct: 170 EKKLLLQNLQILKGMQRVATRVNKHEVTPFIQPYWQLNWCKPTILFLGNEGSGLDPGLEA 229 Query: 247 TATSMAHLHMPGIIKALNVSNAAA 270 T + ++++LNV AAA Sbjct: 230 VCTDAVTIPHTSLVESLNVGVAAA 253 >gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032] gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus SAFR-032] Length = 247 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 18/248 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +KK+ + ++++ LFL G+H V AL + + K + + + +D D Sbjct: 13 KQWKKLHTKKERTK-----TGLFLVEGIHLVEEALKSRAVKELMVTSPDKLPSHIDPDIE 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 L + + + E A+ T P+ + + L++LD V DP N Sbjct: 68 L------YELSEEAFFAMTETETPQHIAAVCTVPVFEE-----KKYERLLLLDAVQDPGN 116 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A D +I + + +SA G+ H+P ++ S L + G Sbjct: 117 LGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQGSHFHLPILKQS-LQQTIAACKEQG 175 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++ K + ALI+G EG G+ P+ + ++ M G ++LNV+ Sbjct: 176 IPVYGSALNNAKAYKSVTAEGPFALIVGNEGGGINPEILQMTDHNLYVPMYGQAESLNVA 235 Query: 267 NAAAVALY 274 AAAV +Y Sbjct: 236 VAAAVLVY 243 >gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 176 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S L++VLD++ +NIG++ R+A AF + I + + K+A GA + + + Sbjct: 23 SPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSVVWEY 82 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA 248 + N D +Q + TI + + K ++K ALI G E KG+ + + Sbjct: 83 VENTMDVIQSLKENKVTTIAIEQAENAVFLNDFKVSKDEKYALIFGNEVKGVAQEVVSSC 142 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G +LN+S +A V ++ Sbjct: 143 DTVVEIPQYGTKHSLNISVSAGVVVW 168 >gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 263 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 63/140 (45%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VL+ + DP N+G ++R+ GII + + +S G+L +P+ + Sbjct: 113 LLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ S G K ++ ++G EG GL + + A + + Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + +A + +Y Sbjct: 233 PMEGAVESLNAAISATLLMY 252 >gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] Length = 196 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 4/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A R L +VL +++DPHN+ AI RS AF D + Y+ + VL K+++ A + Sbjct: 18 AHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLY--YTDTPFPVLGRKTSASARKW 75 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + +R + + + + Q + + + + KPL A+I+G E G+ + Sbjct: 76 VESVRHRDRQELETSLRAQNMQILATTFTPTAKPLRTWDFTRPTAIIMGNEHSGVNEELI 135 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 A ++ M G+I++ NVS A+A+ L Sbjct: 136 SMADGELYIPMYGMIQSFNVSVASAIIL 163 >gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 258 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 38/281 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ +K+R Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119 +++ T LA L+ AN + TV PQ I +V H+ L Sbjct: 50 EVVGTTEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + S G + + K D ALI+G EG+ Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 G+ T ++ M G ++LNV+ +A + ++ + QN Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256 >gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei] Length = 300 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 49/272 (18%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-- 107 ++YG+++V + L RKI + + KN + R + + + T+ + I ++V K Sbjct: 24 YIYGLNSVYSVLKKNERKIDKAIINKN-IKRSKKIHKEAYDYILNTIKERNI-QVVYKTK 81 Query: 108 ----EAV----HQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSA 154 E V H + +E + + N+ + + L +V D N+G I RS Sbjct: 82 NEMCELVGGFPHNDIIIELYRYMKNYRHFINSKKTTNNNIYICLHNVYDNMNVGNICRSV 141 Query: 155 VAFSCDGIITTKRYSPSESAVLAK-------SASGALEHIPYIRISNLTDALQKMHSWGF 207 + F + I ++ E K S+ GA E++ + ++N+ + + + GF Sbjct: 142 LFFGGESIFLKRKRKKGEHKNYIKINTPILHSSVGASEYLNFFHVNNMENFISSLKEKGF 201 Query: 208 QTIGLSSDSKKPLEQEI---------KNDKIALILGAEGKGLRP---KTQETATSMAHLH 255 + SS KN+K+ +ILG E KGL K + + +L Sbjct: 202 TILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKNSDICIYINNLF 261 Query: 256 -----MPG--------IIKALNVSNAAAVALY 274 P I+ +LNV+N ++ L+ Sbjct: 262 DEQNIQPNLKNTNDNIIVNSLNVNNVCSIILH 293 >gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] Length = 228 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ DA+ + + G Q + + SDS Q A+ILG+E G+ + + Sbjct: 73 VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A AV LY Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQ 164 >gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J] gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J] Length = 260 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 33/264 (12%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ +K +++ + ++H + L GVH V A L+ + L++ ++ Sbjct: 7 RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERH-------- 58 Query: 85 ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQGLAL----ETAPLLSP-TLDAVRN 131 + HP + V P T+ D + G+ V G+ L ETA P T+DA Sbjct: 59 --VRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDAD-- 114 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171 Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 Q +HS + SS +K+ + + + + G EG G+ + T+ Sbjct: 172 HCTF----QSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTT 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAA+ L+ Sbjct: 228 PVTIPQPGGMESLNVAAAAAICLF 251 >gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 278 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ +++V D N P N+G ++RSA +F ++ T + ++++G+L +P Sbjct: 119 DAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVF 178 Query: 191 RISNLTDALQ---KMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 R+ L+ + + G T + +D + + + ++ I L++G E G+ Sbjct: 179 RVPGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATI-LVIGNETSGMSAAW 237 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ + + M G +L +A AVALY Sbjct: 238 QDACDELVAIPMGGTASSLGAPSAGAVALY 267 >gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 302 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R A CD ++ +A L +S +G+L H+P +++S + D Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNAKLVRSTAGSLFHLPVVQLS-VQDWF 206 Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + I +D KP + E+ + +A++ G E +GL + + Sbjct: 207 ECAAKANIRVIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + G +++N++ +AAV L Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290 >gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M] gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M] Length = 234 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 3/170 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 KE E L PT + S ++VLD + DP N+GA++RSA AF + + + Sbjct: 66 KELSQTKTVFEQMALCKPTSENNLLSDKILVLDDIQDPANLGALMRSASAFGFNQVFASF 125 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225 + +S+ GAL + R N L+++ + + +E K Sbjct: 126 HSADFYHEKTIRSSQGALFSLSLKR-GNTKSFLEEIKEKNYSIFSAFPQKANITMEDAKK 184 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG EG+G+ +T+ + ++ +++LNV+ A ++ +Y+ Sbjct: 185 YPKKVLVLGNEGQGISLETEALSDYFVNICTQN-VESLNVAVAGSILMYL 233 >gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR 15-3] Length = 282 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 14/152 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185 R + + LD V DP N+G I+R+A A GI+ TT +SP ++ G++ Sbjct: 122 RVDDVYIALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPET----VRATMGSIF 177 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRP 242 IP R + T H F+ + + + K P++ + KN I L++G E +GL Sbjct: 178 SIPLYRCNESTFLNWSTH---FRGMIVGTHLKGPVDYRTIDFKNGPIILLMGNEQQGLSD 234 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++A + G +LN++ A A+ LY Sbjct: 235 VLVNHCNNLARIPQCGHADSLNLAVATAIMLY 266 >gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1] Length = 263 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 63/140 (45%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VL+ + DP N+G ++R+ GII + + +S G+L +P+ + Sbjct: 113 LLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ S G K ++ ++G EG GL + + A + + Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + +A + +Y Sbjct: 233 PMEGAVESLNAAISATLLMY 252 >gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] Length = 262 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + +S+ ++L+++ D NIG I+RS AFS DG+I + + +SA G+L Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P I + +A+ + GF SD L +E K A+++G EG G+ Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVRLGEEKLPQKTAVVIGNEGNGVSDTV 226 Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271 ++ L +P ++LN S AA+V Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252 >gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 254 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189 L ++LD V DP N+G ILR+A F G + +SP + +++ GAL + Sbjct: 101 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASMGALARVQP 156 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243 + N D L G G D + E + N + L+LG+EG+G+ P+ Sbjct: 157 TPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAE 216 Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271 T + L + G ++LNV+ A A+ Sbjct: 217 ITDRLTIPASGLSVKGHTESLNVAIATAI 245 >gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 355 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA+AF DG + +++ GA +P + N Sbjct: 199 VLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPIVS-GN 257 Query: 195 LTDALQKMHSWGFQTIGL--SSDSKKP---------LEQEIKNDKIALILGAEGKGLRPK 243 H + + + ++ ++KP Q + + LILG+EG GL + Sbjct: 258 WNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLCLILGSEGNGLSEQ 317 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ + + M G ++LNVS A + L++ Q+ Sbjct: 318 SRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQS 351 >gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24] gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24] gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24] Length = 282 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 119 KLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 174 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 175 VAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDGGTMRGPTAWVFGNEAWGLPEET 234 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 235 RALTDAVLRVPIHGKAESLNLATAAAVCLY 264 >gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS 6054] gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 423 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 74/321 (23%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82 R NH D ++ + ++ ++YG H+V +AL + R + L N R L Sbjct: 101 RENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSALESGKRSSYSRLYVHNCQDRQLI 160 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--------- 133 A + + + I+ VH G+ LET L T+ ++ Q Sbjct: 161 KIAETKYGVKIVERSSKNDLNILCNNGVHNGVVLETKSLELNTIHSLGACQDNEYKVTVY 220 Query: 134 -----------------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 L + LD + DP N+G I+RSA F D I+ Sbjct: 221 NDLDDAEVEIVKTVARTDPVEDEPVAKMPLGIFLDGITDPQNMGGIIRSAYYFGVDFIVV 280 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----- 219 ++ V K++ GA++ I + + ++ + G+ + S S KP Sbjct: 281 PGSHTARLGPVANKASVGAMDLIDIYETNESLKFIDRIRANGWSVV---STSAKPSVDEI 337 Query: 220 ---------LEQEIKNDKIA--------------LILGAEGKGLRPKTQETATSMAHLH- 255 +EQ++KN + L++G+EG+G+R + + + + Sbjct: 338 NDLKSKHEKVEQQLKNKYVDMNELPNILSQTPVLLVMGSEGEGIRTHMKLRSDFLVGIDK 397 Query: 256 ---MPGIIKALNVSNAAAVAL 273 I+ +LNVS A+ + + Sbjct: 398 GRKQDHIVDSLNVSVASGILI 418 >gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016] gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 228 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ DA+ + + G Q + + SDS Q A+ILG+E G+ + + Sbjct: 73 VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A AV LY Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQ 164 >gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 258 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 38/281 (13%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ +K+R Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119 +++ T LA L+ AN + TV PQ I +V H+ L Sbjct: 50 EVVGTAEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + S G + + K D ALI+G EG+ Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 G+ T ++ M G ++LNV+ +A + ++ + QN Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256 >gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 257 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 L++VL+ V P N+GAILR+A D +I T Y+P+ + +S+ G L Sbjct: 110 LILVLEAVEKPGNLGAILRTADGAKVDAVIVCDETVDFYNPN----VIRSSVGTL-FTNQ 164 Query: 190 IRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I + + L + + Q + L ++K E + + A++LG E GL + Sbjct: 165 IASGSKEEVLNFLKNNNIQIVSTFLRDNTKSLYEMDFSSSS-AIVLGTEATGLSDFWADE 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G + +LNVSNAAA+ +Y Sbjct: 224 SDVLIKIPMLGKVDSLNVSNAAAICVY 250 >gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735] gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735] Length = 179 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L T + ++D + ++ L++VLD V +N+G++ RS AF + + + Sbjct: 4 LRTIEMKRLSIDEFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---- 228 +A + K+A G + + + +A++ +H G+ + + QE+ DK Sbjct: 64 NAEIHKTALGGEDSVAWKYFERTEEAVEALHHDGYFVYSIEQVEGSTMLQELTIDKPLTS 123 Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G E KG++ + + + + G +LNVS A + ++ Sbjct: 124 KGYAVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMW 171 >gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057] gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056] gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058] gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059] gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013150] gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013113] gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6014059] gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057] gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013150] gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013113] gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6014059] Length = 258 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106 L G H A L +K+F L T+ AL D + + H F + V + + + Sbjct: 35 LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L++V DP N+G +LRSA A + II T+ Sbjct: 94 TLPC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + LTD L K F T SS L + + Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G E A S+ + PG ++LNV+ A ++ + Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251 >gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1] gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1] Length = 279 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + + + LD V DP N+G I+R+A A G++ + + ++ G+L H+P R Sbjct: 129 ATVWIALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLAR 188 Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +S TDA + + + W +G + ++ L++G E +GL + Sbjct: 189 LS--TDAFKALAAKWPGMVVGTHLEGSVDYRSLDYSEPALLLMGNEQQGLPADMAACCSH 246 Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281 + + G +LN++ A +ALY I + H + Sbjct: 247 LVRIPQVGQADSLNLAVATGIALYEIRRKHLS 278 >gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42] gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42] Length = 248 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 130 RNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R QL L+++D V DP N+G ++R+A A D ++ + + + +SA G+ HI Sbjct: 99 RPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHI 158 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P ++ L + ++ S G G + ++ + + ALI+G EG G+ + Sbjct: 159 PILK-RPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQK 217 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AAA+ +Y Sbjct: 218 TDLNLYVPLYGQAESLNVAVAAAILVY 244 >gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 3/183 (1%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + TV Q +++ +E LA+ + P + + + LL+V + V P N+GA+LR Sbjct: 80 IVTVARQAFERVAYREGPDGFLAVVPSVNAHPRMLDLPANPLLLVAEGVEKPGNLGAMLR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A DG+I + + + + + G + +P + + ++ L+ + I Sbjct: 140 TADAVGVDGVIAADPVTDWGNPNVVRGSKGTVFSVP-VAAAPTSETLEWLRDNDIPLIAT 198 Query: 213 SSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + D+ + +I + +A+ +G E GL + ATS + M G + +LNV+ +AA+ Sbjct: 199 TPDTDV-MHTDIDLSGPVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAI 257 Query: 272 ALY 274 LY Sbjct: 258 VLY 260 >gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1] gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1] Length = 255 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG+I + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVILSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + + D S K L K ++ALI+G E G+ P A ++ Sbjct: 173 ADVITDFQAAAIPVYASMLDRSAKQLPDFEKVPQLALIIGNEAHGVSPTIASLADEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 233 PIKGQAESLNAAVAAGIMIY----HFA 255 >gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 13/209 (6%) Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDH 140 D+ LP V V + ++ G + +H+GL A+ P + ++ L++L+ Sbjct: 63 DYGEVLPASVGVYEVTRPLLAEVAGYD-MHRGLIAVAERPQPLSVAEVTDGARTLVILEG 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V D NIG+I R+A DG++ + + + G +P+ + Q Sbjct: 122 VGDHENIGSIFRNAAGMDVDGVLFGAATADPLYRRSVRVSMGHALRLPFAHLDGTATTWQ 181 Query: 201 K----MHSWGFQTIGLS-SDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETAT 249 + + G++ + L+ D+ + L + + + DK+AL++G EG GL Sbjct: 182 RSLDELRLTGWRLLSLTPDDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATH 241 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M +LNV+ +AA+A Y Q Sbjct: 242 VRARIPMAPGTDSLNVATSAAIAFYERQR 270 >gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021] gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21] Length = 351 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HAGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ + A + + A G E+I + + AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDYIDSALMHLRKSGYQVIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307 >gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 274 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 22/261 (8%) Query: 29 DYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85 D ++ F N + R + EN F+ V L + LA K L R D Sbjct: 12 DDPRIAEFRNIRERDLTGRENRFIAEGTVVLRMLAEAHAQDRGFLAEKILLLRNRVDGVM 71 Query: 86 ----NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQ 133 LP PV +D +VG +H+G LAL E A L+A+ Sbjct: 72 PILERLPADVPVYVAEADVLDGVVGFH-LHRGVLALGRREDRGEAA-----LLEALPERA 125 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V +++ N G++ R+A AF D ++ + + + G++ +P++R Sbjct: 126 LVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVGSVLSVPHLRGG 185 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D L + GF LS K + + ++AL++G EG+GL P+ A Sbjct: 186 KAMDVLLSLAERGFAIWTLSPHGKTDIRAIPASARMALVIGTEGEGL-PEALLARFHSAR 244 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + +LN + A +AL+ Sbjct: 245 IPQSEDLDSLNAATATGIALF 265 >gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] Length = 176 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+P +A ++S+ L++VLDHV +N+G++ R++ AF + I + A + K Sbjct: 12 LTP--EAFKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 69 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGA 235 +A GA E + + + +A+ K+ G+ + + + KN K A+I+G Sbjct: 70 TALGAEETVDWEYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLDNLLLDKNKKYAVIMGN 129 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E KG++ + + G +LNVS + ++ Sbjct: 130 EVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIW 168 >gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 168 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLDH++ NIG+I R + AF + II S L K++ E++ + N Sbjct: 19 LVLDHISGEANIGSIFRLSDAFHVEEIIFCGTEPNLNSNRLKKTSRSTHEYVKFQFSENP 78 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIK-NDKIALILGAEGKGLRPKTQETATSMA 252 T ++ + + I L + + P++Q E+K ++K+ LI G E G+ S+ Sbjct: 79 TAIIKGKKAEAYSIIALEITQNSVPIQQLELKPSEKVVLIAGHENFGISEDLLRLCDSIV 138 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 H+ M G ++NV+ A ++LY Sbjct: 139 HIPMFGNNSSMNVAQAIGISLY 160 >gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A G+ P E+ VL+ +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKENMKVLSHTSAGARNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ +A+Q + G Q + + SD+ A+ILG E G+ + Sbjct: 71 VELDTHDSMVEAVQTLKDQGMQVLATNLSDTAIDFRDVDYTKPTAVILGGEKNGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum] Length = 1145 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 20/159 (12%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD--------GIITTKRYSPSESAVLAKSASGALE 185 ++++LD V +P NIG+I+R+ F + G + R +P +A S+ GA+E Sbjct: 322 IVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYL-SSRGAIE 380 Query: 186 HIPYIRISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQE-----IKNDKIALILG 234 H+ I I+ A+ + + Q T SD L E + + LI G Sbjct: 381 HLDVIPITARNTAINMIKEFAEQKWEIVSTATAISDKALTLFSEGSALTLGTKPLLLIFG 440 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E G+ P + +T+ + G+I +LNVS +AA+ L Sbjct: 441 SESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIIL 479 >gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 270 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ + DP N+G+I+RSA AF+ G++ S +++ G++ ++P IR+ Sbjct: 125 LALEGIRDPGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLIRLDEA 184 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L W +T+G ++ E + L++G E GL + T + + Sbjct: 185 A-YLDWHRGWTGRTVGTHLRAELQPESVERGSATLLVMGNEQSGLPARIAATCNQLVRIP 243 Query: 256 MPGIIKALNVSNAAAVALY 274 M +LN++ A A+ LY Sbjct: 244 MRDGADSLNLAAATAIMLY 262 >gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] Length = 176 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 13/174 (7%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 LE L A R L++VLD+V HN+G++ RS AF + + + SA Sbjct: 6 VLEMNRLTVEEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSA 65 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKNDK 228 + K+A GA + + + + DA++++ + Q G + +K L+ + + Sbjct: 66 EIHKTALGAEDSVSWKYYKSTLDAVEELKQQDYFVYSIEQVEGSQNMAKINLDH---SKR 122 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A++LG E KG++ + + S + G +LNVS A + ++ FAK Sbjct: 123 YAVVLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVW----EFAK 172 >gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 269 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V++ + + N+GAI RSA A D + T + + + G + +PY R+ + Sbjct: 121 VVVMEDIVNHTNLGAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARLDS 180 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSM 251 L + GF+TI L+ ++++ DK+AL+LG EG GL A Sbjct: 181 WPGGLTTLAEHGFRTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMR 240 Query: 252 AHLHMPGIIKALNV 265 + M + +LNV Sbjct: 241 VRIPMTAGVDSLNV 254 >gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 230 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK- 178 + TLD R L +++D V+ PHNI AI+R+ CD GI+ P A +A Sbjct: 9 ICDTLDR-RQPDLTVIMDGVHKPHNIAAIVRT-----CDAVGILDVHAVLPKNRARMAAG 62 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237 +A G+ + + TD ++++ G Q + SD Q AL+LG E Sbjct: 63 TAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIEYRQVDYTRPTALLLGTEK 122 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ + + M G++++ NVS AAA+ L Sbjct: 123 FGVSDEVASAVDQNVTIPMMGMVESFNVSVAAAIIL 158 >gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14] gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A R L + ++ V+ P+N+ AI+R+A A G+ P E VL+ +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKEGMKVLSHTSAGARNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ +A+Q + G Q + + SD+ A+ILG E G+ + Sbjct: 71 VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 31/263 (11%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ +K +++ + ++H + L GVH V+A L+ L++ ++ Sbjct: 7 RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMPAQCLVSERH-------- 58 Query: 85 ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQG---LALETAPL--LSPTLDAVRN 131 + HP + V P T+ D + G+ V G +AL P L T+DA Sbjct: 59 --IRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDAD-- 114 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + SS +K+ + N + + G EG G+ + T+ Sbjct: 172 HCTFESVHSRLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTP 228 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAA+ L+ Sbjct: 229 VTIPQPGGMESLNVAAAAAICLF 251 >gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755] gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165] gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755] gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 335 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 13/192 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H SA I +L T K A L + A+ H V + + ++ G Sbjct: 101 VYGEHACSAIFQQRPEAIVRLWITSECAKKTGALLSYLAD--HKKAYHLVDTEEMLRVTG 158 Query: 107 KEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E H G+ L ++ P L L R L++LD VN+ NIG I+R+ + GI Sbjct: 159 TEH-HGGMCLLVKKSTPFSLEGYLQLERQHDCLILLDGVNNAQNIGGIIRTCAFYGIKGI 217 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I S+ A+ A G LE + + + AL ++ G+Q + L+ + P L Sbjct: 218 IVENN-DILNSSNAARVAEGGLEFVYPLETKHKHIALMQLRKAGYQIVHLTRQRQAPHLS 276 Query: 222 QEIKNDKIALIL 233 + + + KI +L Sbjct: 277 RIVLSKKIVFVL 288 >gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 266 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 13/250 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIF--QLLATKNALARLDWD 84 + K + Q SR + + L G+H + L +I+ + A K + RL D Sbjct: 15 EVKALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGELSRIYLNEAAAGKPEVRRL-LD 73 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +LP V ++P + K+ + + LAL P SP + ++++ L+ + DP Sbjct: 74 -SLPPGSTVVSLPEAVMSKVTALASAGELLALSPRP--SPEAPPAQAARVM--LEDIQDP 128 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+A A + +K S + ++ GA H +RI D ++ Sbjct: 129 GNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGA--HF-ALRIHEHADLAGELSR 185 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +G + + + L +A + G EG G+ A + + MPG ++LN Sbjct: 186 FGGRKLVTHLEGSSSLYGHDLTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHAESLN 245 Query: 265 VSNAAAVALY 274 V+ AA V L+ Sbjct: 246 VAMAATVCLF 255 >gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 287 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ +L +V DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 124 RLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKA----VRASVGSLFHLP 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 ++ A++ + + G + + + L+ E+ + A + G E GL +T Sbjct: 180 VAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTMGGPTAWVFGNEAWGLPEET 239 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 240 RALTDAVVRVPIHGKAESLNLATAAAVCLY 269 >gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688] gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 4/152 (2%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +P L + +++L+ + DP N+G++LRSA A + ++ + + S + G Sbjct: 103 TPQLPLPETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQG 162 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A +P + S+L L ++ +T+ + Q ++ +A ++G EG GL Sbjct: 163 AQFVLPVVERSDL---LALAGNFPGETLATVMQGESLYAQNLRQ-PVAFLIGNEGAGLSL 218 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K Q A+ H+ M G +++LN + A ++ ++ Sbjct: 219 KLQAAASRKIHIPMQGQVESLNAAAATSICVF 250 >gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] Length = 216 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASG 182 L A R L +++D+VN PHN+ AI+RS CD + ++ SE ++ ++A G Sbjct: 13 LLAYRQPDLTVLMDNVNKPHNLSAIIRS-----CDAVGIETVHAVSEEKIIKNRQRAARG 67 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGL 240 + + + + A + + G Q + ++ ++ ++ + + A+++GAE G Sbjct: 68 SSKWVNLELHETIEHAFACLRAQGMQVL-VAHHHEESVDFRTLDYTLPTAIVMGAELFGP 126 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A H+ M G++++LNVS AAAV L+ Q Sbjct: 127 SATTLSGADHCIHIPMQGMVESLNVSVAAAVILFEAQ 163 >gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. 1-1C] Length = 271 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 5/153 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ VP + +D I G VH+G+ + P L L + L+ VL +++ ++ Sbjct: 78 PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESM 136 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A AF+ GII K ++++GA +PY R ++ + + F Sbjct: 137 GAIFRNAAAFASTGIILDKTCCDPLYRKSIRASAGAALSVPYTRGDDIESIITALSDANF 196 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + LS + L+ ALI G EG L Sbjct: 197 ELYTLSPSATCYLKDAKATKHTALIFGIEGNDL 229 >gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 17/149 (11%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPY 189 S +++LDH++DP N+G I+RSA AF II TK +E + A S E+I Sbjct: 98 SDRILLLDHISDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVE 157 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + L+K + + LSS D +K + ND I L +G E GL Sbjct: 158 LSLEEIR-KLKKNYRF------LSSHMEGIDVRK---YDSSNDSIILAIGNEANGLSEDI 207 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + M G I++LN + AA++ + Sbjct: 208 RKLTDDFIKISMQGKIESLNAAIAASIMM 236 >gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM 21211] gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM 21211] Length = 266 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 2/141 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VL V P N+GA+LRSA D ++ V+ S + Sbjct: 117 LLLVLVGVEKPGNVGALLRSADGVGADAVLVVGGVDLENPNVIRASQGSVFTQTLFTLPE 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 DAL + + GF+ ++ D + ++A+ LGAE GL +E Sbjct: 177 --ADALPWLRAQGFRVAAITPDGAQNYWDADLTGRVAVCLGAEHAGLPAAWREHPDLKLA 234 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +LNVS A A+ LY Sbjct: 235 IPMRGAADSLNVSTAGALVLY 255 >gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87] gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87] Length = 246 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P + + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G+ Sbjct: 97 PQYNEIEALQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGS 155 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + HIP + I +L + + + T ++ S K +E + + AL+LG EG+G+ Sbjct: 156 IFHIPVV-IKDLATYITEFEGPVYGTALENAVSFKEIESQ---SQFALLLGNEGEGVNKD 211 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + + G ++LNV+ A ++ LY Sbjct: 212 LLQRTTKNLIIPIYGKAESLNVAIAGSILLY 242 >gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIR 191 Q +++ ++ N+G+I+RS F +G+ + YS S V KSA+ G E IP R Sbjct: 92 QFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSG-YSCSPDHVTVKSAARGCQEWIPIKR 150 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250 + D ++ G++ I L + P +K +K ++LG E G+ P+ AT Sbjct: 151 WDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEATM 210 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++NV+ A A+ + +++ Sbjct: 211 KVTIPMAGRKASMNVAGAFAIMAFCLRSN 239 >gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 250 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIR 191 Q +++ ++ N+G+I+RS F +G+ + YS S V KSA+ G E IP R Sbjct: 101 QFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSG-YSCSPDHVTVKSAARGCQEWIPIKR 159 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 + D ++ G++ I L + P +K +K ++LG E G+ P+ AT Sbjct: 160 WDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEATM 219 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++NV+ A A+ + +++ Sbjct: 220 KVTIPMAGRKASMNVAGAFAIMAFCLRSN 248 >gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] Length = 263 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 63/140 (45%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VL+ + DP N+G ++R+ GII + + +S G+L +P+ + Sbjct: 113 LLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ S G K ++ ++G EG GL + + A + + Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + +A + +Y Sbjct: 233 PMEGAVESLNAAISATLLMY 252 >gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 257 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 122/272 (44%), Gaps = 30/272 (11%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+ + H +D++K+Q+ + + L G H V A ++ R Sbjct: 3 EQITSVHNQHV-------KDWRKLQTRKGRKKFGQ----YLLDGWHLVQEASHSNQR--- 48 Query: 70 QLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L+A + L ++ F V V P+ I I + QG+ A + P ++ Sbjct: 49 -LIALIGSAEELSQHEDIVARFENVYEVTPEIIKHIT-ETNTPQGI---VAVVEMPDVNQ 103 Query: 129 VRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 V N + ++LD V DP N+G ++R+A A G++ +KR + + + +S G+ H Sbjct: 104 VTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFH 163 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRP 242 + + +++L + G + PL + + AL++G EG+G+ Sbjct: 164 LQLV-VADLKRWINDFQDDQHPVYGTQLN---PLAKNFRHVQPGKDFALVMGNEGQGMAE 219 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T+ ++ M G ++LNV+ +A + ++ Sbjct: 220 ELLNQTTTNLYIPMRGNAESLNVAVSAGILMF 251 >gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773] Length = 257 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 12/229 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H V A+ + K ++AT+ +A D +PH P + + I G Sbjct: 31 LLDGWHLVEEAIKAKA-KFHAVMATEAQMAEHLPD--VPHGVPAFEISEEVAKHIAGTN- 86 Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG+ E + L T D + + ++LD + DP N+G ++R+A A G++ + Sbjct: 87 TPQGIFAEIS-LPDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGEGT 145 Query: 169 SPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK- 225 + + S + ++ G+ H+ + ++ TDAL G G D ++I+ Sbjct: 146 ADAYSPKVVRAMQGSQFHLEVLNGDLNEWTDALTAN---GLPVYGSQLDEAAQSYRQIEP 202 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ALI+G EG+G+ + T+ ++ + G ++LNV+ A + ++ Sbjct: 203 STQFALIVGNEGQGMSEELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 265 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G L P+ D R ++ ++V+D V D NIGAI Sbjct: 78 IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T+ + + + G + +P+ + D L ++ GF+T Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL + A + + M + +LN Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251 >gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 265 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDHVND 143 P PV V +D I G +H+G LA+ ET P LDA+ L++VL +++ Sbjct: 72 PVDLPVYIVTGAVMDAIAGFH-LHRGILAIGRKETPQPAGPLLDALPALALVVVLVGISN 130 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+I R+A AF D ++ + + GA IP+ ++ + Sbjct: 131 HDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTAMLA 190 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF+ LS + + ++AL LG EG+GL P++ + M +L Sbjct: 191 ERGFEQFALSPRGRTDIRDAKSAGRLALYLGTEGEGL-PESLLARLQTVRITMAEGFDSL 249 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ A+A+AL+ HF+ Sbjct: 250 NVAAASAIALH----HFS 263 >gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 284 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + LD V DP N+G I+R+A A S G+I TT +SP ++ G++ IP R Sbjct: 128 IALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPET----VRATMGSIFSIPLYR 183 Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246 +W F+ + + + K L+ ++KN I L++G E +GL Sbjct: 184 FDE-----SAFLNWSSCFKGMIVGTHLKGSLDYRKLDLKNGPIILLMGNEKQGLSDILTN 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A AV LY Sbjct: 239 RCDKLARIPQSGRADSLNLAIATAVMLY 266 >gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 283 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 16/187 (8%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV + + +I G L P L + R+ + ++ L+ V +P N+GAI Sbjct: 83 PVYVAEEKVLSRITGFRLTRGMLCAMRRPSLPGMEELCRDKRRIVFLEDVVNPTNVGAIF 142 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---------RISNLTDALQKM 202 RSA A + ++ T S A+ + G + IP+ R ++++ Sbjct: 143 RSAAALGMEAVVLTPGSSDPLYRRAARVSMGTVFQIPWTYSPAPASLPREEWPQAGIRRL 202 Query: 203 HSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 GF T + L +D+ P+ + +K+A++LG EG GL K+ ET + M Sbjct: 203 KELGFVTAAMALRNDTVSIDDPVFD--RTEKLAVVLGTEGDGLAAKSMETCDYTIKIPMT 260 Query: 258 GIIKALN 264 + +LN Sbjct: 261 HGVDSLN 267 >gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 265 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 2/142 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++L+ + DP N+G I+R+AVA D + T ++ + ++++G +P Sbjct: 112 LGLMLERLQDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPMRVSD 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252 NL ++ Q IG K EI + LI LG EG GL P+ Sbjct: 172 NLGALIEGYKRQQVQVIGTLPQGNKTY-WEIDFTRPTLILLGNEGAGLTPELVSLVDQQV 230 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + G +++LNV+ AAA+ LY Sbjct: 231 TIPLGGGVESLNVAIAAALLLY 252 >gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 296 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 17/218 (7%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ------TIDKIVGKEAVHQGLALETAP 120 ++F+L TK+A A++ A P + V PQ +DKIV T P Sbjct: 78 QLFEL--TKSAFAKV---AYRERPDGLLAVAPQWKRTLQDLDKIVAGSGGPG-RPGSTTP 131 Query: 121 LLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + + A ++ + ++V++ + P N+G ILRSA A CD +I + + + Sbjct: 132 ATTSAVGAGAPDLQRAPFILVVEAIEKPGNLGTILRSADAAGCDAVIVCDPVTDIFNPNV 191 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++++G L +P + ++ L + + G +TI + ++K +A+++G+E Sbjct: 192 VRASTGVLFSVPLV-VAESAPVLAWLRAQGVRTIATTPAAEKLYTDADLRGPLAIVMGSE 250 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + + M G +LNV+ A + L+ Sbjct: 251 QYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLF 288 >gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 1/144 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +L ++++ V P+N+G+ILR+A F D + T + + + K+A G + + Sbjct: 57 EGRLALLVESVTQPYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHT 116 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+++ DAL + G++ + + S PL + L +GAE G P A Sbjct: 117 RMASTADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDHGCSPALLAGAD 176 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++ ++ G + +LNV+ A A+AL Sbjct: 177 AVTYVPQIGRVGSLNVAVATAIAL 200 >gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 237 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 16/162 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VLD + DP N+G + R+A+A D I P VL +++SGA+ H+P++R Sbjct: 73 FVLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLGQKVL-RASSGAVFHLPFLRFD 131 Query: 194 NLTDALQKMHSW--------GFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKG 239 + + GF+ SS++K + + + ALILG EG+G Sbjct: 132 GTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRRTALILGNEGQG 191 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + K QE + ++++LNV+ AV L + + A Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232 >gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 231 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 15/154 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IP 188 R + +VL+ + DPHN AI+RS C GI + Y E+ + K G I Sbjct: 32 RTDFIRVVLEDIRDPHNANAIIRSG---ECLGI---QHYHIIENENVFKLGRGVSRGAIK 85 Query: 189 YIRISNL-------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240 ++ + DAL + S G++ + S + + +E+ D+ IA+++G E G+ Sbjct: 86 WVDVHQYPESKTPTADALHDLKSQGYKIVVTSPNKEACAPEELALDQPIAIVMGNERDGI 145 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A L M G ++ NVS A+ + Y Sbjct: 146 SEEAKSMADEFVRLPMHGFTESYNVSVASGITFY 179 >gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 304 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 17/213 (7%) Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRN 131 + L R DA PV + ++ + G +H+G A+ PL PT D ++ Sbjct: 99 REVLERFGPDAG---EVPVFIASEEMLETLTGFH-LHRGAMAAMHRLPL--PTAADLLKT 152 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ + VL+ + D N+GAI RSA A D ++ T + + + G + +P+ R Sbjct: 153 ARRIAVLEDIVDHTNVGAIFRSAAAIGVDAVLVTPSCADPLFRRSVRVSMGTVFQVPWTR 212 Query: 192 ISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKT 244 + + Q GF+ +G ++ + E+ D ++A +LG+EG GL+ +T Sbjct: 213 LETWPEP-QLFREHGFEVAALALGENTITLDDYTAELATDPARRVAWVLGSEGYGLKERT 271 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + M + +LNV+ AAAV + T+ Sbjct: 272 LRTVDKTVMIPMQHGVDSLNVAAAAAVTFWATK 304 >gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 286 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 17/188 (9%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LA------LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV P + ++ I G +H+G LA L + P L ++ + +L+ + D Sbjct: 86 PVFVAPEEVLESITGFH-LHRGALAAMNRPELASVPELLSAARGGAGARRVAILEDLVDH 144 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA RSA A D ++ T R + + + G + + + RI A+ ++H+ Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRIERWP-AMDELHA 203 Query: 205 WGFQTIGLS-SDSKKPLEQ----EIKND---KIALILGAEGKGLRPKTQETATSMAHLHM 256 GF L+ S++ L++ + D ++A++LG EG GL +T A + + M Sbjct: 204 QGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTIAEADEVVRIPM 263 Query: 257 PGIIKALN 264 G + +LN Sbjct: 264 AGAVDSLN 271 >gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822] gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822] Length = 264 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 34/274 (12%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQ 70 I SL++ ++R+ HR K R +NLFL G H + A S + Sbjct: 2 ITSLQNPLVKQMRKLHR---------AKGRRE---QNLFLIEGTHLLETACKVKS-SLMV 48 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--------QGLALETAPLL 122 + T DW P + + + Q + IV E + G+ A + Sbjct: 49 VCCTP------DWQNRYPQLWELASQKAQRAE-IVTPEILAAMTTTVNPDGVVASAARIS 101 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +PT + + L +VL+ + DP N+G I+R+AVA +G+ + ++ + ++++G Sbjct: 102 NPT-ELISPLSLGLVLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAG 160 Query: 183 ALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGL 240 +P +R+S NL ++ S Q I K EI + LIL G EG GL Sbjct: 161 EWFRVP-MRVSQNLPQVIEDYKSQNVQVIATLPQGTKTY-WEIDFTRPTLILMGNEGAGL 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + G +++LNV+ A A+ LY Sbjct: 219 SDELISLADIGVNIPLGGGVESLNVAIATALLLY 252 >gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis TXDOH] Length = 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 11/253 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + L G+H SA L+ + ++ T AL+ + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALSHAEAR 65 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + P V T+P D + G+ + V G+ L + R S +VLD V Sbjct: 66 ETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPASALPERVSDTSVVLDGV 121 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+G+ILRSA A + + + S+ + +SA GA H + I DA Sbjct: 122 QDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTL 178 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S + + +A + G EG G+ + ++ AT + PG ++ Sbjct: 179 IERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPGGME 238 Query: 262 ALNVSNAAAVALY 274 +LNV+ AAAV L+ Sbjct: 239 SLNVAAAAAVCLF 251 >gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 246 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 23/232 (9%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E LF+ H V L QL AT +W A P ++ V + K+ Sbjct: 22 EGLFIAEGHKVVGDLLKAGYTPKQLFATA------EWIAANPVAGAIE-VTNDELTKLSL 74 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--- 163 ++ Q LAL P+ +P QL ++LD+V DP N+G I+R A F D I Sbjct: 75 QQHPQQVLAL--FPIPTPQHQTPSTQQLSILLDNVQDPGNLGTIIRIADWFGIDTIFCSE 132 Query: 164 -TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T ++P V A S A H+ YI L D+L K F G D + Q Sbjct: 133 GTVDAWNP--KVVQATMGSIARVHLIYIDTMQLLDSLPK----DFPVYGTFLDGENIYTQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271 E+ + +++G EG G+ + T + H +LNV+ A A+ Sbjct: 187 ELSQQGL-IVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNVAIATAI 237 >gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299] gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299] Length = 513 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + LD + DP N+GA+LRSA G++ + S S V++K++SGALE + + Sbjct: 343 VWLALDEIVDPQNLGAMLRSAHFLGVAGVVVCAKNSAPLSPVVSKASSGALERMDVRSVG 402 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR 241 + LQ+ G+ G + P +++ +A +++G EG GLR Sbjct: 403 VMPRFLQRCVEEGWDVFGADN---APDAEDVTAVSVARPSVVVVGNEGAGLR 451 >gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 496 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 66/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ + +N+P N+G LR+A A + +I + ++A GA+ IP + Sbjct: 335 VILATEQINNPENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIPIYTCA 394 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + + + G +G + + ++ L + +I+G E +GL T +S+ Sbjct: 395 DLPTWVGQARARGIHVVGATGNVERTLYDADLPLPLMIIVGNETEGLTDATLAVCSSLVR 454 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M +LNV AA V LY Sbjct: 455 IPMAPGQDSLNVGVAAGVILY 475 >gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 237 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 11/191 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKIVGKE 108 +YG + + I +L AT +L D + L H + + ++++ G E Sbjct: 3 VYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERVTGTE 62 Query: 109 AVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 H G L +TA +L L + L++LD VN+ N+G I+R+ + GII Sbjct: 63 --HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T S + S+ A+ A G LE + + N AL ++ G+Q + L+ + P + Sbjct: 121 TENVDSLNSSSA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAPSLTK 179 Query: 224 IK-NDKIALIL 233 IK +K+ +L Sbjct: 180 IKLAEKVVFVL 190 >gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 197 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +VL++V DPHNI A+LR+ A + + KS+S A + + Sbjct: 16 RQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKRWGHKSSSSAAKWLTV 75 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S+ + + T L++D+K E + +AL+ G E +G+ + ++ Sbjct: 76 HQFSDTATCMAVVREKYDKIYTTHLAADAKSLYELDFTG-SVALVFGNEQEGVSEEIRKL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + GIIK+LN+S A AV++Y Sbjct: 135 CDGNFIIPQVGIIKSLNISVACAVSIY 161 >gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis] gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis] Length = 342 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 16/155 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---- 190 ++VL+ + DP N+G ++RSAVAF GI + K++ GA +P + Sbjct: 185 ILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASRGASFQVPIVSGSW 244 Query: 191 -RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-------EIKNDKIALILGAEGKGLRP 242 + L D Q G S D + P+ + + + I L+LG EG+GL Sbjct: 245 HHLEALKDEFQMKMLAGHPA---SDDEQTPVSELSQGFADSLADIPICLVLGNEGQGLSE 301 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ + + + M ++LNV+ A + LY+ Q Sbjct: 302 KSLQEC-QLVSIPMARNYESLNVAVAGGIFLYMLQ 335 >gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 56/268 (20%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ + + G H V AL S K ++LAT+ AL+RL A L + Sbjct: 19 QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138 +G ++ + ++ L + +NSQ + ++L Sbjct: 69 -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL 115 Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194 D + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ I+ ++ Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170 Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L DA+ + + L + K L ++ALI+G E G+ P+ A + Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLY 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G ++LN + AA + +Y HF+ Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254 >gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 265 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G L P+ D R ++ ++V+D V D NIGAI Sbjct: 78 IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T+ + + + G + +P+ + D L ++ GF+T Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL + A + + M + +LN Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251 >gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 242 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHP-----FPVKTVPPQT 100 E + G +V AAL RK+ ++L + D D A + H + V + Sbjct: 2 ETCIVEGNISVKAALLGKKRKVHKILVDAK---KKDKDTAFILHKAKEAQVDIAYVKREE 58 Query: 101 IDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157 ID + GK H G+ L+ + N + L +++ V DP N G +LR+ A Sbjct: 59 IDALATGK--THGGIIAYCGQRKYQNLEELVNKKQVFLALIEGVEDPFNFGYVLRTLYAA 116 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 CDG++ R + + V+ ++++GA E++ I ++ D L +H + Sbjct: 117 GCDGVLVPLRNWTTAADVVTRASAGASEYMNIIIADDMEDTLTYLHQNDITLLCAQRKDA 176 Query: 218 KPLEQEIKNDKIALILGAEGKGL 240 L ++I L +G E +GL Sbjct: 177 ISLYSYTFPERICLAIGGEMRGL 199 >gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 295 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VL V DP N+G ++R+A A D ++ T+ + S ++A+G+L H+P + + Sbjct: 146 VVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSLFHLPVLTGAE 205 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + D L + + G S + L +IA I G E GL T + A + Sbjct: 206 IGDVLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGNEAHGLDRATLDAAPLRVRI 265 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 + G ++LNV AA V L+ T Sbjct: 266 PLAGRAESLNVHTAATVCLFET 287 >gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D] gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D] Length = 260 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 31/263 (11%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ +K +++ + ++H + L GVH V A L+ L++ ++ Sbjct: 7 RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPAQCLVSERH-------- 58 Query: 85 ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQG---LALETAPL--LSPTLDAVRN 131 + HP + V P T+ D + G+ V G +AL P L T+DA Sbjct: 59 --IRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDAD-- 114 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + SS +K+ + N + + G EG G+ + T+ Sbjct: 172 HCTFESVHSRLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTP 228 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAAV L+ Sbjct: 229 VTIPQPGGMESLNVAAAAAVCLF 251 >gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp. hominis C80] gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp. hominis C80] Length = 246 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 78/146 (53%), Gaps = 4/146 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ +++LD + DP N+G ++R+A A D ++ K + + + +++ G++ HIP Sbjct: 101 ISKAKQVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIP 160 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I + L +++ + T ++ S K +E + D AL+LG EG+G+ + Sbjct: 161 -IVTTELNKFIEQFDGPVYGTALENAVSYKNIESQ---DTFALLLGNEGEGVNKELLAHT 216 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LNV+ A ++ LY Sbjct: 217 SQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 289 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+ PL P D + L+V++ + P N+G ILRSA A D +I + + Sbjct: 118 LDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTDLFNPN 177 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---------SDSKKPLEQEIKN 226 + ++++G L +P I ++ + + + G +++ + SD + PL Sbjct: 178 VVRASTGVLFSVPVI-VAGSGEVREWLRERGIRSVATTPSATTLHTDSDLRGPL------ 230 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+++G+E GL A + + M G +LNV+ A + L+ Sbjct: 231 ---AIVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLF 275 >gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] Length = 179 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 3/149 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + S L++VLD++ +N+G+ R+ AF + I+ + K+A GA E + Sbjct: 20 IEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATESVE 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ 245 + DAL+++ G+ L + QE + D KIAL+ G E G+ + Sbjct: 80 WEHYPQTVDALKELKKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDEVL 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + G +LN+S ++++ Sbjct: 140 ELCDHVLEIPQLGTKHSLNISVTLGISVW 168 >gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] Length = 183 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF + + + + K+A G + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEWKYFK 84 Query: 194 NLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQ 245 N DA+ ++H G+ + S + LE +I+ + A+I+G E KG++ + Sbjct: 85 NTEDAVNELHKKGYYVYSIEQVEGSTKLQNLEVDIRQHNTDQHYAMIMGNEVKGVKQQVV 144 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + G +LNVS A + ++ FAK Sbjct: 145 DMSDGCLEIPQFGTKHSLNVSTTAGIVIW----EFAK 177 >gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +S L++ LD + DP N+G I+R A F + I+ + + S ++ GAL H+ + Sbjct: 100 SSSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVK-V 158 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L D L+ + G D + +E+ + I +++G EG G+RP+ +E Sbjct: 159 HYTELEDYLKAQVARQIPLFGTFLDGENMYTKELSANGI-IVMGNEGNGIRPQIEELIDQ 217 Query: 251 MAHLHMPGI------IKALNVSNAAAV 271 L++P ++LNV+ A AV Sbjct: 218 --KLYIPSFPPERETSESLNVAIATAV 242 >gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 24/256 (9%) Query: 41 RHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPV 93 R LFL G VS AL + +L AT AL AR +A + F Sbjct: 19 RDARADTGLFLLEGPQAVSEALAFRPDLVLELFATPTALDRYPDLARAVREAGVEVEFVT 78 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + V D + + V G+ + L L + +L+ +L+ V DP N G I+R+ Sbjct: 79 EDVIASMADTVTPQGVV--GVCRQFPTSLKQILG--DDPRLIAILEEVRDPGNAGTIIRA 134 Query: 154 AVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 A A D +I T R Y+P + ++ +G+L H+P + L L+++ + G Q Sbjct: 135 ADAAGADAVILTGRSVDLYNPK----VVRATTGSLFHLPVAIMPELDAVLERVKAAGLQV 190 Query: 210 IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L + A + G E +GL+ + A + + G +++N++ Sbjct: 191 LAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIYGQAESMNLA 250 Query: 267 NAAAVALYITQNHFAK 282 AA+V LY ++ FA+ Sbjct: 251 TAASVCLY--ESAFAQ 264 >gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 260 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 14/151 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ I+ Sbjct: 119 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK 174 Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++L DA+ + + L + K L ++ALI+G E G+ P+ + A Sbjct: 175 -ADLPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADE 233 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LN + AA + +Y HF+ Sbjct: 234 KLYIPIKGRAESLNAAVAAGIMIY----HFS 260 >gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] Length = 263 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 67/140 (47%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VL+ + DP N+G ILR+A GI+ + + +S G++ +P+ + Sbjct: 115 LIVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQD 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + ++ G + ++ ++ A ++G EG GL + + A + + Sbjct: 175 LKKDIGRLKDKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKI 234 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN + A++V ++ Sbjct: 235 PMKGRVESLNAAIASSVLMF 254 >gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 258 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 21/231 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L G H A L +K+F L T+ AL HP K + + E + Sbjct: 35 LEGTHLCLAWLQQ-QKKLFSLFTTEQALE---------HPDLKKIIELHQGHVFIISEVL 84 Query: 111 HQGLAL--ETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 ++ L+ T P L T + S ++L++V DP N+G +LRSA A + II Sbjct: 85 YKDLSTLGNTLPCLGIIDLPKTASTIDYSVDTLILENVQDPGNVGTLLRSAAAANIKQII 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ + S + ++ GA + LTD L K F T SS L + Sbjct: 145 CTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSK 201 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ILG EG+G E A S+ + PG ++LNV+ A ++ + Sbjct: 202 DLSKPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251 >gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] Length = 265 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV T + + ++ G L P+ D R ++ ++V+D V D NIGAI Sbjct: 78 IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA A D ++ T+ + + + G + +P+ + D L ++ GF+T Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194 Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ +D+ ++ + ++A+++G EG GL + A + + M + +LN Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251 >gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 282 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 119 KLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 174 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A + G E GL +T Sbjct: 175 VAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDAGTMGGPTAWVFGNEAWGLPEET 234 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + + G ++LN++ AAAV LY Sbjct: 235 RALTDAVLRVPIHGKAESLNLATAAAVCLY 264 >gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] Length = 282 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 14/251 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP 88 Y+ ++ + RH E + +S PS +L +N L+ + D ++LP Sbjct: 27 YRDIRERDLTGRHGFIAEGTVVLDQLALSERFR-PS----SVLVLRNRLSSIADRLSHLP 81 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPT--LD-AVRNSQLLMVLDHVN 142 P+ ID+I G +H+G+ ++T P S T LD A+ +++ + Sbjct: 82 ADCPIYVSERAVIDQIAGFP-MHRGVLAHGIDTQPERSVTEVLDNAMAGYGPVLIAIGIA 140 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 + NIGA+ R+A AF G++ + + G + + R N D + Sbjct: 141 NHDNIGALFRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRSGNADDLIAAA 200 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + G++ I L+ + L+ +++AL++GAEG GL P+ + M + + Sbjct: 201 EAAGYRPIALTPKGEHSLDDLEPTERLALVVGAEGPGL-PENILDRLHGLRIAMESDVDS 259 Query: 263 LNVSNAAAVAL 273 LNV+ AA+ L Sbjct: 260 LNVATTAAIVL 270 >gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119] gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119] Length = 246 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A + P D + Q+L+ LD + DP N+G ++R+A A D ++ K + + + + Sbjct: 92 AVIEKPKHDISKAKQVLL-LDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMR 150 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ G++ HIP I + L +++ + T ++ S K +E + D AL+LG EG+ Sbjct: 151 ASQGSVFHIP-IVTTELNKFIEQFDGPVYGTALENAVSYKNIESQ---DIFALLLGNEGE 206 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + + + G ++LNV+ A ++ LY Sbjct: 207 GVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLY 242 >gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 257 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 14/176 (7%) Query: 108 EAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E V + L++ P SP L V+ N +L+ LD++ DP N+G ILR+ AF+ Sbjct: 83 ENVIKKLSVNIDP--SPILAIVKMKEETCDVNDNVLL-LDNIQDPGNLGTILRTCFAFNV 139 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + + K++ GA+ I ++R ++ L+ + F I D Sbjct: 140 KQVIFNNCVDLYNAKTI-KASMGAIFKINFLRFNSSKLTLEFLLKNNFYLIATILDKNAI 198 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+K K L++G EG GL + A+ + M ++LNV+ A A+ LY Sbjct: 199 SLNELKIKQKYCLMVGNEGHGLSQNFIDYASIKTMIKMNQ-TESLNVAVATAIFLY 253 >gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] Length = 246 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++VL DP N+G I+R+A AF G++ + S + +S++G++ HIP + Sbjct: 85 ETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCVV 144 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242 + DA +H +G S + ++ + A + G E +GL Sbjct: 145 PSFADARALIHGRSAALLGTSGGAASISLSDLLVQGVSARSRLSQSHAWVFGNEARGLSG 204 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G ++LNV++AAA L+ +Q Sbjct: 205 DEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQT 240 >gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] Length = 182 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD+V +N+G++ R+A AF +G+I ++ K+A GA + + Sbjct: 25 LTLVLDNVRSLNNVGSLFRTADAFRLEGLILCGITGLPPHPMIHKTALGAELSVAWEHAE 84 Query: 194 NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 + +A++++ S G++ L ++DS P E + +++AL++G E G+ Sbjct: 85 STLEAVEQLRSKGYKIWALEQATDSLCPEESPLTPPERVALVVGNEVHGVADDVIACVDR 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS +A +A+Y Sbjct: 145 CIEIPQYGTKHSLNVSVSAGIAIY 168 >gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 261 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 11/258 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R + + + R LFL G V+ AL +P+ + ++LAT+ A A D Sbjct: 5 TERSARVVAARKLTRRAGRDAAGLFLAEGRQAVAEALADPA-GVREVLATEAAAA-AHRD 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVN 142 P PV+ V + + + QGL A PT D + ++ L + L + Sbjct: 63 LLAAAPVPVRLVTDKAAAAL-SETVTPQGLVAVCALRDVPT-DVLVDAPPSLTVALAELA 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N G +LR+A A ++ + +S++G+L H+ +R + L + L ++ Sbjct: 121 DPGNAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFHVDVVRGAPLPELLPRL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G + + L++ E+ + + G E +G+ A + + M G Sbjct: 181 RAAGVTVLAADGGGEAALDELGPELAG-PVLWLFGNEARGVPAALAALADARVRIPMRGR 239 Query: 260 IKALNVSNAAAVALYITQ 277 ++LN++ AAA+ LY TQ Sbjct: 240 AESLNLAAAAAICLYTTQ 257 >gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 306 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 21/261 (8%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 ++ + ++S T E + G V A+++ I L AT++A AR + Sbjct: 25 RVAALARRSTRTKY-ERFLVEGPQGVREAVHHACGDILDLYATQDASARYPEILSEARAA 83 Query: 92 PVKT--VPP----------QTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMV 137 V T V P Q + +V +AV + A AP ++ + +++L+ V Sbjct: 84 GVYTHLVTPAVMAAMSADAQGLLAVVRTQAVARPSAAGGSRAPQVAELKQVLDSARLVAV 143 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L DP N G I+R+A A D ++ + + + +S +G+L H+P + L + Sbjct: 144 LTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRSTAGSLFHLPVLWGLGLEE 203 Query: 198 ALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 Q +H G L++D + L + + A LG E GL P++ A ++ Sbjct: 204 ISQAVHGAGLAI--LAADGRGELNLFESETLLARPTAWWLGNEAHGLSPESLTQADAVVS 261 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AAAV Y Sbjct: 262 IPLYGQAESLNVATAAAVCFY 282 >gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 37/168 (22%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R L +V+++VN HN+ AI+R+ CD + K ++ + E SASGA Sbjct: 19 RQPDLTVVMENVNKAHNLAAIIRT-----CDAVGIPKVHAVALRPEIRTKQNSASGANRW 73 Query: 187 IPYIRISNLT-DALQKMHSWGFQ----------TIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++I N T D + GFQ T + D KP AL++GA Sbjct: 74 VD-VQIHNSTEDVFSTLRQGGFQIFVAHFSPQATDFRAVDFTKP---------TALVVGA 123 Query: 236 EGKGLRPKTQETATSMA----HLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ ETA S+A ++ M G++++LNVS A A+ L+ Q Sbjct: 124 EWEGI----SETAISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQ 167 >gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 271 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 2/174 (1%) Query: 102 DKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 DKI ++ QG+ + L P T D ++ +VLD + DP N+G ++R++ A D Sbjct: 92 DKISDTDSC-QGIFVVAKMLDKPFTEDKLKKGGKYLVLDELQDPGNLGTMIRTSDAVGLD 150 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ T + +SA G++ + + ++ T + + Sbjct: 151 GIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEKDFERVIEAFRLKDIPTAAAVINGGTEI 210 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + A+++G EG+GL E + + M G I +LN + AA + L+ Sbjct: 211 RQYDFSKGCAVVIGNEGRGLMHDHAEMCSHKVTIAMHGHIDSLNAATAATIFLW 264 >gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 264 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +T+ PQ I IV K+ ++ + + D++R L++L+ + DP N+G ++R+ Sbjct: 87 ETITPQGILAIV-KQPIYTLKDMTSG-------DSIR----LLLLEDIRDPGNLGTMVRT 134 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A GI+ +K + + +S GA+ +P+ + L ++ + + I + Sbjct: 135 AEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQIKN---EEIAIY 191 Query: 214 SDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + L+ + DK+ A+++G E GL K +T + M G +++LN + Sbjct: 192 A---AHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESLNAAI 248 Query: 268 AAAVALY 274 AAAV +Y Sbjct: 249 AAAVLMY 255 >gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] Length = 246 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++VL DP N+G I+R+A AF G++ + S + +S++G++ HIP + Sbjct: 85 ETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCVV 144 Query: 193 SNLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKI------ALILGAEGKGLRP 242 + DA +H +G S S S L ++ + + A + G E +GL Sbjct: 145 PSFADARALIHGRSAALLGTSGGAASISLSDLLVQVVSARSRLSQSHAWVFGNEARGLSG 204 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G ++LNV++AAA L+ +Q Sbjct: 205 DEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQT 240 >gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea] gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A GI P E V +ASG+ + + Sbjct: 16 RQPDLTLCLDRVHKTNNIAAVIRTADAV---GIHQVHAVWPDIEMRVSGNTASGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 I+ ++ DA+Q + Q + + + +EI + +ILG E G+ P+ Sbjct: 73 TIKHYHMDDAVQAFRAQDMQILATNFSADAVDFREIDYTRPTVIILGNEHDGVSPEGIAA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ +Y Q Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQ 162 >gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299] gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 106 GKEAVHQGLALETAPLLSPT----LDAV---RNSQLLMVLDHVNDPHNIGAILRS--AVA 156 GKE +GL P +S LDAV R+ L+ +L+ V D N+ A+ RS A+ Sbjct: 12 GKECTTEGLTRAFEPQVSEERIARLDAVVQQRSFDLMPILEGVYDIGNVLAVCRSTEALG 71 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I+ + +S +++ GA++ + + +A++++ + G++ + + Sbjct: 72 IGSLGVISDAGLAFKQSG---RTSGGAVKWTNLEQWRSTEEAIREVKARGYRVLTTVFEG 128 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PLE A+ILG E G+ + + A ++ M G ++LNVS A+++ ++ Sbjct: 129 GHPLEHYDWTVPTAVILGNERDGVSDEAKRLADGGVYISMNGFTESLNVSVASSMIMH 186 >gi|145634580|ref|ZP_01790289.1| rRNA methylase [Haemophilus influenzae PittAA] gi|145268125|gb|EDK08120.1| rRNA methylase [Haemophilus influenzae PittAA] Length = 185 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 111 HQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H G+ L A L LD RN L++LD+VN+ NIG +LR+ F I+ Sbjct: 15 HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVADN 74 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIK 225 + +A + + A G E+I + + AL ++ G+Q I +S + + PL++ Sbjct: 75 VENLYSAASM-RVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHVSHNKQGDPLDKVRL 133 Query: 226 NDKIALIL 233 +K+ +L Sbjct: 134 KNKVVFVL 141 >gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 LL+VL+ + P N+GAILRSA D II T Y+P+ +S+ G + +P Sbjct: 121 LLLVLEGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPN----AIRSSQGLIFALPI 176 Query: 190 IRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + L D LQK +QT+ + + + + AL G+E GL Sbjct: 177 VNADREALADWLQKGR---YQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNH 233 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ AAAV LY Sbjct: 234 LDQRICIPMKGRADSLNVAAAAAVCLY 260 >gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM 20745] gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM 20745] Length = 293 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + A + L ++ D + DP N+G +LR+A+ G+ T + + + ++ GA Sbjct: 121 IGAGATAPLFLIADGIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHF 180 Query: 186 HIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P I+ L H G T I + D++ + +I+G+E +GL P Sbjct: 181 RLP---IAYLDWRAPAPHIAGIATRIAATGDAETVYDAIDWTAPACVIIGSEAEGLSPAA 237 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E AT A + + G +++LN + A V L+ Sbjct: 238 REFATGTARIPLAGGLESLNAAMAGTVILF 267 >gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] Length = 201 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 12/143 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRI 192 ++ LD++ DP N+G I+R + +F D +I YSP +S GA+ + I + Sbjct: 61 VVFLDNLQDPGNVGTIIRLSKSFDIDTLIVKNFDIYSPK----CLRSTQGAIFNQNIILV 116 Query: 193 SNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +N D L+++ GF+ T L+ +S + L N K +I G EG G+ + S Sbjct: 117 NN-NDLLKELQHSGFEIVTTVLNQESIE-LNNFNFNKKTVVIFGNEGSGIEKEI--INNS 172 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 +++P ++LNV+ AA+ L Sbjct: 173 NKKIYIPISFESLNVATCAAIVL 195 >gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] Length = 226 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A+R L + L+ V+ PHN+ AI+RSA A GI T P + L+ SA+G+ Sbjct: 3 AMRQPDLTICLEEVHKPHNVSAIVRSADAV---GIHTIHAIWPDQQVKLSVSSAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDK-IALILGAEGKGLRPKT 244 + I + A+ ++ S Q + ++ S++ ++ +EI + +++G E KG+ K Sbjct: 60 VNVISHPSTEAAISQLKSQNMQVL-VTHLSEQAVDFREIDYTQPTCIMVGQEKKGISAKA 118 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E A + M G++++LNVS A+A+ LY Q Sbjct: 119 LELADKHIIIPMVGMVQSLNVSVASALILYEAQRQ 153 >gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810] Length = 351 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 13/199 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQ 99 ++ E + +YG + A + I +L AT + L + A + V V + Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHV--VDSE 170 Query: 100 TIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + ++ G E H G+ L A L LD RN L++LD+VN+ NIG +LR+ Sbjct: 171 ELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCA 229 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSS 214 F I+ + A + + A G E+I + ++ AL + G+Q I L + Sbjct: 230 YFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVLHN 288 Query: 215 DSKKPLEQEIKNDKIALIL 233 PL++ +K+ +L Sbjct: 289 KQGDPLDKVRLKNKVVFVL 307 >gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] Length = 176 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLDHV +N+G++ R++ AF + I + +A + K+A GA E + + Sbjct: 25 LIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEETVDWEYFK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 + +A+ K+ G+ + + ++ DK A+++G E KG++ + Sbjct: 85 DTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQNVVDNCDI 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 272 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGA 183 A R +L+ +L HV DP N G ++R A A D +I T Y+P ++++G+ Sbjct: 115 AARAPKLVALLAHVRDPGNAGTVIRCADAAGADLVIVTSESVDVYNPKA----VRASAGS 170 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKG 239 L H+P + +A+ + + + + L+ E+ ++A + G E G Sbjct: 171 LFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGAADLDDELDAGRLAAPTCWMFGNEAWG 230 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L A + + G ++LN++ AAAV LY Sbjct: 231 LPEALLALADEAVRVPIHGRAESLNLATAAAVCLY 265 >gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 176 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD++ +N+G++ R+A AF + I S A + K+A GA E + + I Sbjct: 26 FIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDWEYIE 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 + + ++ G+ + + E+ KN KIA+++G E KG++ + + Sbjct: 86 DTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGVQQEVINHSNG 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G ++NVS + ++ Sbjct: 146 CIEIPQYGTKHSMNVSVTTGIVIW 169 >gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 257 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+++ L++LD + DP N+G I+R A II TK + + +S+ G++ H+ Sbjct: 103 RDARQLIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNL 162 Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + D L+K + L DS +E + +++ A + G EG G+ + + Sbjct: 163 HTMEKIEIVDYLKK-QQYNIVVTSLQEDSIPYMEMSL-DERNAFVFGNEGHGVSKEFLDI 220 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + G ++LNV+ A + L+ +++ Sbjct: 221 ADEKVIIPISGQAESLNVAMALGILLFYSRD 251 >gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V NDP N G ++R A D ++ ES+ ++++G+L H+P R Sbjct: 118 RLVAVCVETNDPGNAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARE 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 N++D + ++ + G + L+ E+ A + G E GL + + A Sbjct: 178 RNISDVMGQLKAAGLSIAATTMGGDVSLDDAAEVVAQPTAWLFGNEAHGLPQELIDAADH 237 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AAA+ ++ Sbjct: 238 RVSIPIRGHAESLNLATAAAMCMW 261 >gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 261 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 24/220 (10%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+M+ Q+ +H Q L L G H + +A F+++ + W A P Sbjct: 11 KQMRKL-QQVKHRRQQGKLLLEGTHLLQSAWEQ--NWSFEIVCYTDR-----WQAKYPQI 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----------SPTLDAVRNSQLLMVLDH 140 + Q D+ E V + TA + P ++ L + L+ Sbjct: 63 WQ------QIQDRTTRLERVSPEVLQATATTVHPDGVVAVISRPATPSLPIQTLGLALET 116 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G ++R++VA +G++ ++ + ES + ++++GA H+P LQ Sbjct: 117 IQDPGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGAWFHLPQRATDKFVTVLQ 176 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G Q I D+ Q +++G EG GL Sbjct: 177 TYKQQGMQLIATVPDASHTFWQVDYRQPTLILIGNEGAGL 216 >gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. NATL2A] gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 229 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 33/161 (20%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186 R S L +++++V PHN+ AI+RS CD + + Y+ + +A G+ + Sbjct: 18 RISDLTVLIENVEKPHNLSAIIRS-----CDAVGVLEAYAIFNKEKFLTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS----------SDSKKPLEQEIKNDKIALILGAE 236 + + T+A++ + GF+ G + D K P A +LGAE Sbjct: 73 VKINQYKKTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCDFKGP---------TAFVLGAE 123 Query: 237 GKGLRPKTQETATSM-AHLHMP--GIIKALNVSNAAAVALY 274 G+ ++E ++ M H+H+P G++++LNVS AA+ L+ Sbjct: 124 KWGI---SEEASSLMDEHIHIPMRGMVESLNVSVAASALLF 161 >gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii] gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii] Length = 321 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 19/163 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG------A 183 N L++LD + DP N+G +LR+A AF+ DG+ + P L S + A Sbjct: 160 NPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIA 219 Query: 184 LEHIPYIRISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGA 235 P I+ +A+ +++HS + +S + L ++IK+ K + L+LG+ Sbjct: 220 AGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHS---KKNSPEALIEKIKSVKSLCLVLGS 276 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG+GL + + + + MPG ++LNV+ + +++ N Sbjct: 277 EGQGLSDPARRGSQHLT-VPMPGKFESLNVAVVGGILMFLLMN 318 >gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc gasicomitatum LMG 18811] Length = 257 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDP 144 ++PH P + + I G QG+ E + L T D + + ++LD + DP Sbjct: 64 DVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEIS-LPDKTFDPSYVHDGAWLLLDKIQDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--Q 200 N+G ++R+A A G++ + + + S + ++ G+ H+ + + TDAL Sbjct: 122 GNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEVLTGDLVEWTDALTAN 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + +G Q + S+ S + +E + + ALI+G EG+G+ + T+ ++ + G Sbjct: 182 NLSVYGSQ-LNESARSYREIE---SSTQFALIVGNEGQGMSDELAAKTTANLYIPIQGQA 237 Query: 261 KALNVSNAAAVALY 274 ++LNV+ A + ++ Sbjct: 238 ESLNVAIAGGILMF 251 >gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] Length = 277 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 16/163 (9%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ ++ LD V DP N+G +LR+A+A + ++ P V+ +S+SGA+ + Sbjct: 109 HTSFVLALDRVQDPGNLGTLLRTALAADVELVLLASGADPLSPKVV-RSSSGAVLTLAQE 167 Query: 191 R--------ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIKNDK-IALILGAE 236 R + L + LQ + G Q + L D+ P+E E+ + AL+LG E Sbjct: 168 RLGPEERQGVRALAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTRPTALVLGNE 227 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G GL P+ + L +++LNV+ AAAV L + + Sbjct: 228 GSGLHPELLACCSHGVTLPHSPRVESLNVA-AAAVPLLLERRR 269 >gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 231 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYS-PSESAVLAKSASGALEH 186 R L +VL+ V+ PHN+ AILR +CD G++ S P K+A G+ + Sbjct: 18 RMGDLTVVLEAVDKPHNLSAILR-----TCDAVGVLEAHVVSLPGRPRTFNKTAKGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P ++ L + GF+ G LS D++ + + ++GAE G+ + Sbjct: 73 VPLHPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCDFTGPS-CFLMGAEKWGMSDEA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AAA L+ Sbjct: 132 LAMVDQPLFIPMTGMVQSLNVSVAAATLLF 161 >gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1] Length = 255 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP NIG I+R+A A +G++ ++ + + ++ G+ H+P I+ L Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLL 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q ++ + D K L K ++ALI+G E G+ + A + Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSDEAVNLADEKLFIP 233 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 234 IKGQAESLNAAIAAGIMIY----HFA 255 >gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 254 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 68/274 (24%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 19 QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---------------- 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLL---------------- 135 GLA + + L+ + L + +NSQ + Sbjct: 62 ------------AQLGLAYDESKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFAFSY 109 Query: 136 ---MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188 ++LD + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ Sbjct: 110 GKWVLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLN 165 Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I+ ++L DA+ + + L + K L ++ALI+G E G+ P+ Sbjct: 166 LIK-ADLPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAAL 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A ++ + G ++LN + AA + +Y HF+ Sbjct: 225 ADEKLYIPIKGRAESLNAAVAAGIMIY----HFS 254 >gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] Length = 246 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 9/197 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGA 149 P+K + KE + + T L +AV+N + +VL+ + + N A Sbjct: 25 PIKEFGTLANNASYNKELLQKLTCAFTKERLDKMTNAVKNRTRSIAVVLEGITNEGNEQA 84 Query: 150 ILRSAVAFSCDGIITTKRY-SP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 I R+ A G T R SP ++ +GA++ I + + + ++ S G+ Sbjct: 85 IYRTMDAL---GFQTAHRIPSPLYRLKTCGRTDAGAMKWIDIESWKSTEECISQLKSCGY 141 Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + SS++K K L+ ++K A++LG+E +G+ + ++ + M G +++ NVS Sbjct: 142 KILATSSENKTKTLDSFDFSNKTAVVLGSEQEGISKEAMNLVDNVFRISMVGFVESYNVS 201 Query: 267 NAAAVALY-ITQNHFAK 282 AAA+ LY I Q+ K Sbjct: 202 VAAAIILYHIYQDRIRK 218 >gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] Length = 227 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + LA +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLAHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ S G Q + + SD+ A+ILG+E G + ++ A Sbjct: 73 DTHDSIDTAISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILGSEKVGASDRAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330] Length = 302 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRIS 193 +VL+ + D N+GA+LRSA A II + + + + + ++ GA L HI + R+ Sbjct: 157 VVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHI-HERV- 214 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +LT + H T LS + L A I G EG G+ P+ Q AT+ Sbjct: 215 DLTQWRSQYHDRVLVT-ALSEHNNFSLYDLTLQQPSAWIFGNEGSGVSPQIQNIATANVK 273 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LN++ AA V L+ Sbjct: 274 IPMLGATESLNIAQAATVCLF 294 >gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] Length = 257 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 2/159 (1%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T P + L +N + L+++ DP N+G I+R+A GII + + + Sbjct: 94 TEPSIEELLHKEKNPCFFL-LENLQDPGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVI 152 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S GA+ +P++ +L + + ++ G +Q+ + D A ++G EG Sbjct: 153 RSTMGAIFRVPFVIADSLPEVIFQLKQNGVSVYAGHLKGDVFYKQDYR-DGSAFLIGNEG 211 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 GL + A + M G +++LN + +A + +Y T Sbjct: 212 NGLTDEITALADYKIKIPMKGKVESLNAAVSATILMYET 250 >gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis] Length = 143 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 13/140 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V L + RK+++L +N + A+ + ++ VP + +D++V Sbjct: 7 YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A LD + +N Q ++LD + DPHN+G+I+R+A A Sbjct: 66 GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123 Query: 160 DGIITTKRYSPSESAVLAKS 179 GI+ KR + + +AK+ Sbjct: 124 HGIVIPKRRAVGLTTTVAKA 143 >gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. NATL2A] gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL2A] Length = 278 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD + DP N+G + RSA+A + + P VL +S++G++ H+P+ RI + Sbjct: 111 ILALDRIQDPGNLGNLFRSALAGEYEAMWLASGADPLNQKVL-RSSAGSVLHMPFERIGH 169 Query: 195 --------LTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGL 240 L L +Q +G S +K KP + + L+LG EG G+ Sbjct: 170 SSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGV 229 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + T L ++ +LNV++AA Sbjct: 230 HASIEACCTDFVTLPHSSLVDSLNVASAAV 259 >gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] Length = 260 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 3/145 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S L ++L+ + P N+GAILR+A A D I+ + + +S+ G + I Sbjct: 109 SALFLILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTI-FTNKIV 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I+N + ++ + I S + ++IK +A+I+G+E KGL + Sbjct: 168 IANYKIIISWLNKNKIKIISTSVNKIYNNFFMKKIKKKSLAIIIGSESKGLSDIWFKNKK 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 +M ++ + G I +LNVS + A+ LY Sbjct: 228 NMINIPIKGKIDSLNVSTSTAIILY 252 >gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061] gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061] Length = 247 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 18/250 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 N + +KK+ + ++++ LFL G+H V AL + + K + + + +D D Sbjct: 11 NIKQWKKLHTKKERTK-----TGLFLVEGIHLVEEALKSGAVKELMVTSPDKLPSHIDPD 65 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L + + + E A+ P+ + + L++LD V DP Sbjct: 66 IEL------YELSEEAFSAMTETETPQHIAAVCAVPVFEE-----KKYERLLLLDAVQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+A A D +I + + +SA G+ H+P ++ L + Sbjct: 115 GNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSAQGSHFHLPILK-QTLQQTIPVCKE 173 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + ++ K ALI+G EG G+ P+ + ++ M G ++LN Sbjct: 174 QGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGINPEILQMTDHNLYVPMYGQAESLN 233 Query: 265 VSNAAAVALY 274 V+ AAAV +Y Sbjct: 234 VAVAAAVLVY 243 >gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] Length = 229 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R S L ++++HV PHN+ AILR SCD + + ++ S S +A G+ Sbjct: 18 RMSDLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + ++++ A+ + F+ G L D++ + + A +LGAE GL + Sbjct: 73 VSLRDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLTEEA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS A A LY Sbjct: 132 TALMDQAIFIPMRGMVQSLNVSVATATLLY 161 >gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 196 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187 R L +VL +++DPHN+ AI RSA AF G+ Y + + KS++ A + + Sbjct: 20 RQKDLTLVLANIHDPHNVSAIYRSADAF---GVAALHLYYTDTAFPELGKKSSASARKWV 76 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +R + + + + G Q + S + KPL A+I+G E G+ + Sbjct: 77 ESVRHRSAEELYAALKAGGHQILATSCTPESKPLGAYDFTKPTAVIMGNEHSGVPAELNS 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G+I++ NVS AAAV L Sbjct: 137 LVDGEVYIPMYGMIQSFNVSVAAAVIL 163 >gi|149610160|ref|XP_001511112.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog, partial [Ornithorhynchus anatinus] Length = 96 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 15/88 (17%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--------------QLLM 136 PV+TVP + +D + G E VHQG+ LE PL + + +L + Sbjct: 6 VPVRTVPRKVLDGLCGHE-VHQGVCLEVTPLQPRSWAEIGRGGTEEDDGEGPGGRPRLWL 64 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIIT 164 VLD + DP N+GA+LR+A D +I+ Sbjct: 65 VLDRIQDPRNLGAVLRTAHFLGVDEVIS 92 >gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 9/148 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192 L ++ D P NIG+++RSA AF G+I T + ++ +G+L +P +R+ Sbjct: 119 LGVLFDRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVP 178 Query: 193 --SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246 + +++ + G + + +D K + ++ + + L++G E GL +E Sbjct: 179 APDEVMTWVERQRAAGLPLVLVGTDEKG--DADVYDFDLTQPVLLLVGNETSGLSSAWRE 236 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +M + M G +LN + AA LY Sbjct: 237 RCDAMVGIPMTGAASSLNAATAATAVLY 264 >gi|82915128|ref|XP_728972.1| rRNA methylase [Plasmodium yoelii yoelii str. 17XNL] gi|23485711|gb|EAA20537.1| rRNA methylase [Plasmodium yoelii yoelii] Length = 361 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 70/318 (22%), Positives = 131/318 (41%), Gaps = 71/318 (22%) Query: 25 RNHRDYKKMQSFNQKSRHT--SQPENLFL-----------YGVHTVSAALNNPSRKIFQL 71 RN + YK + +N + ++ + N FL YG+++V + L RKI + Sbjct: 40 RNKKKYKLLNLYNDRKKNILXNIKRNSFLDIQNKNDIDYIYGLNSVYSVLKKNERKIDKA 99 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLD 127 + KNA R + + + T+ + I +IV K + P ++ T Sbjct: 100 IINKNA-KRNKKIHKEAYDYILNTIKEKNI-QIVYKTKNEMDELVGGFPHNDIIIEATYR 157 Query: 128 AVRNSQ------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---- 165 ++N + + + L +V D N+G I RS + F D I Sbjct: 158 YMKNYRHFINNKKTTNNNNNNNNNIFICLHNVYDNMNVGNICRSILFFGGDSIFLKRKKK 217 Query: 166 ----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS---DSKK 218 K Y ++ +L S+ GA E++ + ++N+ + + + GF + SS +++ Sbjct: 218 KGEHKNYIKIDTPILH-SSVGASEYLNFFHVNNMENFISSLKEKGFTILSTSSPKNNTRM 276 Query: 219 PLEQEIKN------DKIALILGAEGKGLRP---KTQETATSMAHLH-----MPG------ 258 E+KN +K+ +ILG E KGL K + + +L+ P Sbjct: 277 TNFVELKNMKINKNEKVMIILGNESKGLSEDIIKNSDICIYINNLYDEKNIQPNLKNIND 336 Query: 259 --IIKALNVSNAAAVALY 274 I+ +LNV+N ++ L+ Sbjct: 337 NLIVNSLNVNNVCSIILH 354 >gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 263 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 24/178 (13%) Query: 111 HQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ TA + P + + +N + +++LD + + +N+GAI+RSA F + Sbjct: 80 HQGV---TAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIEN 136 Query: 162 IITTKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------- 213 I+ TK + A + A G +E + ++S+ L++ IG Sbjct: 137 IVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRG-RLTCIGTDLRAHHEI 195 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +D + +E K++ ++LG E +G+ + ++ + + G +++LNV+ AA + Sbjct: 196 ADLGRLIE---KDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAATL 250 >gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 302 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R A CD ++ ++ L +S +G+L H+P +++S + D Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLS-VQDWF 206 Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + I +D KP + E+ + +A++ G E +GL + + Sbjct: 207 ECAAKSNIRVIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + G +++N++ +AAV L Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290 >gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 258 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 19/242 (7%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFP 92 N + +H + L G H A L +KIF L T+ AL D + + H F Sbjct: 25 NARKKH----QQTVLEGTHLCLAWLQQ-QKKIFSLFTTEQALEHEDLKKITELHQGHIFV 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + V + + + LA+ P + T+D ++ ++L+++ DP N+G +LR Sbjct: 80 ISEVLYRDLSTLGTSLPC---LAIIDLPKTASTIDYNVDT---LILENIQDPGNVGTLLR 133 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A + II T+ + S + ++ GA + LTD L K F T Sbjct: 134 SAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFQIPVFVT--- 190 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 SS L + + ILG EG+G + A S+ + PG ++LNV+ A ++ Sbjct: 191 SSHRSTSLYSKDLSKPCVWILGNEGQGASDYALDHAQSVT-IPQPGGQESLNVAIAGSIC 249 Query: 273 LY 274 + Sbjct: 250 FF 251 >gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 255 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP NIG I+R+A A +G++ ++ + + ++ G+ HIP I+ L Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLL 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q ++ + D K L K ++ALI+G E G+ A + Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSGDAVNLADEKLFIP 233 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 234 IKGQAESLNAAIAAGIMIY----HFA 255 >gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] Length = 290 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 120 PLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 P L+ L R ++ ++VL+++ D N+GA RSA A D ++ T + + Sbjct: 117 PTLADLLATARGGAPARRVVVLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRS 176 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDK 228 + + G + +P+ R+ + + + GF L+ SD L+ + + + Sbjct: 177 VRVSMGTVFQVPWTRLESWPGDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDAR 236 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A+++G EG GL T + + M + +LNV+ A+AV + T+ A+ Sbjct: 237 LAMVMGTEGDGLGRHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATRGVGAQ 290 >gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] Length = 229 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 17/153 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186 R S L +++++V PHN+ AI+RS CD + + Y+ + +A G+ + Sbjct: 18 RISDLTVLIENVEKPHNLSAIIRS-----CDAVGVLEAYAIFNKEKFLTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKT 244 + + T+A++ + GF+ G + + + ++ N K A +LGAE G+ + Sbjct: 73 VKINQYKMTTEAIKVLKEKGFKLYGTNLNPRS-IDYRKCNFKGPTAFVLGAEKWGI---S 128 Query: 245 QETATSM-AHLHMP--GIIKALNVSNAAAVALY 274 +E ++ M H+H+P G++++LNVS AA+ L+ Sbjct: 129 EEASSLMDEHIHIPMRGMVESLNVSVAASALLF 161 >gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 255 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 24/178 (13%) Query: 111 HQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ TA + P + + +N + +++LD + + +N+GAI+RSA F + Sbjct: 72 HQGV---TAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIEN 128 Query: 162 IITTKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------- 213 I+ TK + A + A G +E + ++S+ L++ IG Sbjct: 129 IVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRG-RLTCIGTDLRAHHEI 187 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +D + +E K++ ++LG E +G+ + ++ + + G +++LNV+ AA + Sbjct: 188 ADLGRLIE---KDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAATL 242 >gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20] gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20] Length = 259 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 6/143 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A A G+ + + S + +S G+ H+P + + Sbjct: 117 LILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPIVE-GAI 175 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L+++ + G G + + P + K A ILG EG+G+ + A + +L Sbjct: 176 PPFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGVNQEL--LALTDKNL 233 Query: 255 HMP--GIIKALNVSNAAAVALYI 275 ++P G ++LNV+ AA + +Y Sbjct: 234 YIPIYGQAESLNVAIAAGILMYF 256 >gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 247 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186 R + ++++ V+DPHN A+LR+A AF I+T K +SP+ L H Sbjct: 45 RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P I+ A+ + S G+Q + P+ + AL+ G E G+ + Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYFGEGTIPVSDIDLSQPTALLFGNEHSGVSEEAL 159 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S AAA+ALY Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188 >gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 +VLD+V DP NIG ++R+A A G++ T Y+P + ++ G+ H+ R Sbjct: 113 LVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPK----ILRAMQGSQYHLQLKR 168 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250 + NL ++ G G D ++I D+ +LI+G EG G+ + E Sbjct: 169 L-NLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGMSERLIEMTDM 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA V ++ Sbjct: 228 NLYIPIKGSAESLNVAVAAGVLMF 251 >gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 269 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V NDP N G I+R A D +I ES + +S++G+L H+P R Sbjct: 118 KLVAVCVGTNDPGNAGTIIRLVDALGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARE 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 ++ A+ ++ + G + + + L+ + A + G E GL A Sbjct: 178 RDVNGAIGQLRAAGLKLAATTMGGEVSLDDPGNALDQPTAWLFGNEAHGLPDDVLAAADY 237 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN+S AA++ L+ Sbjct: 238 RVSIPIKGSAESLNLSTAASICLW 261 >gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 264 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 12/180 (6%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 T PQ + +V +A L TAP +L+++L +V DP N G ++R Sbjct: 87 DTESPQGVLAVVAAQAHTLEQVLATAP------------RLVVLLSNVRDPGNAGTVIRG 134 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF D ++ T S + +S G+L H+P + ++ + L + + G +T Sbjct: 135 ADAFGADAVLVTDGSVDVLSPKVVRSTVGSLFHLPVVTGLDVNETLDALAAHGIRTYAAD 194 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + A ++G E GL + ++ + + + +++LN++ AA + L Sbjct: 195 GVGTTLLPDVDVSQPHAWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAMAATICL 254 >gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] Length = 229 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A SA+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 ++DA+ ++ S G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 243 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 99/199 (49%), Gaps = 15/199 (7%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + +LP V V P+ I KI G ++ +G+ E P+ Q L+VL+++ND Sbjct: 57 EFSLPESAEVYAVSPEMIQKISGVKS-PEGVLAEVK---MPSFKLPARLQRLLVLENLND 112 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+++AF DG+ + +++ GA+ +P + + +L ++L+ + Sbjct: 113 PGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIV-VGDL-ESLKTLL 170 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIK 261 ++ ++ K + K K+AL+LG+E G ++E + L +P + Sbjct: 171 IDHQMSVFIADLEGKKIGAIPKVSKMALVLGSEAHG---PSKEVISIGERLTIPISSGLD 227 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A + L+ HF Sbjct: 228 SLNVAVAGGILLH----HF 242 >gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] Length = 231 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGA 183 TL + R L + +D V+ PHN+ AI+R+A A GI P + ++SG+ Sbjct: 14 TLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAV---GIGHVHAVFPEDVKFTGHHTSSGS 70 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + SNL + +M + G Q + SD+ L++G+E G+ Sbjct: 71 KRWVTTHKHSNLKSGIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLLVGSELVGVSD 130 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + E A + M G++++LNVS A A+ LY Q Sbjct: 131 EAAEIADQHVIIPMVGMVQSLNVSVATALILYEAQ 165 >gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD P N+G+I+RSA AF G+I T + ++ +G+L +P +R Sbjct: 117 LGVVLDRPTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGSLFAVPVVRAP 176 Query: 194 NLTDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + L ++ +W + D + + L++G E GL +E+A Sbjct: 177 SHREVLDQVAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAWRESA 236 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++A + M G +LN +NAA+V LY Sbjct: 237 DAVASIPMVGAASSLNAANAASVVLY 262 >gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 258 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106 L G H A L +K+F L T+ AL D + + H F + V + + + Sbjct: 35 LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L++V DP N+G +LRSA A + II T+ Sbjct: 94 TLPC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + LTD L K F T SS L + + Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G + A S+ + PG ++LNV+ A ++ + Sbjct: 205 KPCVWILGNEGQGASDYALDHAQSVT-IPQPGGQESLNVAIAGSICFF 251 >gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] Length = 231 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A GI P + V +ASG+ + + Sbjct: 16 RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHQVHAIWPDLDMRVSGNTASGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 IR ++ +A + + G Q + + +EI + A+ILG E G+ P+ Sbjct: 73 TIRHDHMDEAQTQFRAQGMQILATNFSEDAVDFREIDYTRPTAIILGNERDGVSPEGIAA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ +Y Q Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQRQ 164 >gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 248 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 65/142 (45%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V ++P N G ++R A A D +I + ++++G++ + + Sbjct: 98 RLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGSIFGVSVVEA 157 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + +H G + + D + L+ + A + GAE GL P+ A + Sbjct: 158 PDTAGLVAALHGAGLTVLATTLDGEVSLDDAELSGPTAWLFGAEAHGLAPEVAALADARV 217 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AAA+ LY Sbjct: 218 TIPMAGSAESLNVAAAAAICLY 239 >gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 349 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 14/185 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQ 99 ++ E + +YG + + + I +L AT K L + AN + + V Sbjct: 108 NRAEEMKVYGENACLSVFQQRPQAIVRLWATVEGAKKLADELSYLANQKKAYHI--VDRI 165 Query: 100 TIDKIVGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G H G L ++AP +L L+ R L++LD++++ NIG I+R+ Sbjct: 166 EMDRVTG--TPHHGDICLLVKKSAPFILEGYLNIPRKRDCLVLLDNIHNAQNIGGIMRTC 223 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 ++ GII + SA A+ A G LE I + + AL ++ G+Q + L+ Sbjct: 224 AFYNVKGIIVENSDTLHSSAA-ARVAEGGLEFIRPLESKHKEIALTQLRQAGYQIVHLTR 282 Query: 215 DSKKP 219 + + P Sbjct: 283 NKQAP 287 >gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 257 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 33/259 (12%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDAN 86 +++KK+Q+ + Q L G H V+ A+ ++ QL+ T + LA D A Sbjct: 13 KNWKKLQT----KKFRRQSGEYLLDGWHLVNEAVK-AGNQLRQLIGTADQLAAHQDLVAR 67 Query: 87 LPHPFPV---------KTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLM 136 + V TV PQ I +V H+ A ++ A LL Sbjct: 68 AAEAYVVTPEIMQHVTDTVTPQGIAAVVDLPDAHRVPANIQGAWLL-------------- 113 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 LD V DP N+G ++R+A A G++ R + + +S G+ H+ + +L Sbjct: 114 -LDRVQDPGNVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTLLE-GDLH 171 Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +Q G G + + K ALI+G EG+G+ + T+ ++ Sbjct: 172 KWIQDFKQLGAPVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKETTANLYIP 231 Query: 256 MPGIIKALNVSNAAAVALY 274 M G ++LNV+ +A + ++ Sbjct: 232 MRGDAESLNVAVSAGILMF 250 >gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] Length = 260 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 115/268 (42%), Gaps = 41/268 (15%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ ++ + L G+H SA L+ + + T AL+ + Sbjct: 7 RDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPEL-CVVTDGALSHDETQ 65 Query: 85 ANLPHPFPVKTVPPQTI----DKIVGK-EAVHQGLALETAPLLSPTLDAV----RNSQLL 135 A V V PQ + D + G+ +V G+ + LL A R ++ Sbjct: 66 AI------VARVEPQRVVSLPDALFGQLSSVVNGIGM----LLLVERPAAELPGRVARTA 115 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---------LEH 186 MVLD V D N+G+ILRSA A + + + + S+ + +S GA +E Sbjct: 116 MVLDGVQDAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEA 175 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I ++ AL H G Q I D P +A + G EG G+ +E Sbjct: 176 EALIPRLDVPVALTDSH--GAQAID-DCDLTGP---------VAWVFGNEGAGVSAAWRE 223 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + PG +++LNV+ AAAV L+ Sbjct: 224 AAGLRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LDHV +N+G++ R++ AF + I S E+ + K+A GA + + + + Sbjct: 28 VVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPENREVHKTALGAEDAVDWEYVK 87 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATS 250 + T+A+ ++ G++ + +++ LE K ALI G E KG++ + + + Sbjct: 88 DTTEAVDRLKKEGYRIFAIEQAENTTSLENFSLSPGQKYALIFGNEVKGVQQEVIDLSDG 147 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G + N+S + L+ Sbjct: 148 CIEIPQFGTKHSFNISVTVGIVLW 171 >gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A+R L + L+ ++ PHN+ AI+RSA A GI P + L+ SA+G+ Sbjct: 3 AMRQPDLTLCLEEIHKPHNVSAIVRSADAV---GIHNIHAVWPDQHVKLSVSSAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + I + +A+ ++ S G Q + + SDS + +++G E G+ K Sbjct: 60 VKVIPHQSTENAISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQEKTGISDKAL 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 120 ALADQHIIIPMVGMVQSLNVSVASALILYEAQ 151 >gi|190149477|ref|YP_001968002.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262796|ref|ZP_07544423.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914608|gb|ACE60860.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871941|gb|EFN03658.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 345 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG + A I +L AT +L D + L H V + Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163 Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +++ G E H G L + P L L R L++LD VN+ N+G I+R+ Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + +G+I + + SA A+ A G LE + + N AL ++ + G+Q + L+ + Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRNK 280 Query: 217 K 217 + Sbjct: 281 Q 281 >gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] Length = 270 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R ++ ++V+D V D NIGAI RSA A D ++ T + + + G++ Sbjct: 114 EVCREARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243 +P+ + L + ++ GF+T ++ +D+ P++ K+A+I+G EG GL + Sbjct: 174 VPW---TWLDAPIGRLSDLGFRTAAMALTDNSIPIDNPALTAEPKLAIIMGTEGDGLSRE 230 Query: 244 TQETATSMAHLHMPGIIKALN 264 T + + + M + +LN Sbjct: 231 TIAGSDYVVRIPMSHGVDSLN 251 >gi|32034434|ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207693|ref|YP_001052918.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|303250729|ref|ZP_07336925.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252028|ref|ZP_07338199.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245018|ref|ZP_07527115.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247192|ref|ZP_07529243.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251737|ref|ZP_07533641.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253971|ref|ZP_07535823.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256232|ref|ZP_07538019.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258426|ref|ZP_07540167.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126096485|gb|ABN73313.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302649458|gb|EFL79643.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650399|gb|EFL80559.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854183|gb|EFM86391.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856330|gb|EFM88482.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860823|gb|EFM92832.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863175|gb|EFM95117.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865413|gb|EFM97309.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867610|gb|EFM99457.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 345 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG + A I +L AT +L D + L H V + Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163 Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +++ G E H G L + P L L R L++LD VN+ N+G I+R+ Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + +G+I + + SA A+ A G LE + + N AL ++ + G+Q + L+ + Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRNK 280 Query: 217 K 217 + Sbjct: 281 Q 281 >gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L] gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L] Length = 259 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ + DP N+G I+R+AVA +G+ + ++ + +++ G +P +L Sbjct: 114 LALETIQDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHL 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + G Q + D+K ++LG E GLR +TA ++ Sbjct: 174 PTLVAQAQAQGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTADQQVNIP 233 Query: 256 -MPGIIKALNVSNAAAVALY 274 MPG +++LNV+ AAA+ LY Sbjct: 234 LMPG-VESLNVAIAAALMLY 252 >gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 358 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + K+ G E H G+ + ++ P L LD L++LD VN+ NIG IL Sbjct: 174 VESDELTKVSGTEH-HGGICMLVKKSHPFTLQGYLDVPHQEDCLVLLDGVNNAQNIGGIL 232 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F ++ + S + SAV + A G E++ + + +AL ++ G+Q I Sbjct: 233 RTCAFFGVKNMVVEEAESLN-SAVTLRVAEGGAEYVRVLETDDTRNALAQLRHAGYQIIH 291 Query: 212 LSSD 215 +S+D Sbjct: 292 VSND 295 >gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 272 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 67/146 (45%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ L + D P N+G ++RSA AF DG++ T + ++++G+L +P Sbjct: 118 ITDTFLGVAFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +R + + L+ + G +G D +E ++G E G+ +E Sbjct: 178 TVRTQSHREVLEWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGWREAC 237 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LN +NAA V LY Sbjct: 238 DRVLSIPMRGTASSLNAANAATVVLY 263 >gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus] Length = 308 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL +V DP N G +LR A A D +I T Y+P +++ G+L H+P Sbjct: 150 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLYHLPV 205 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + A+Q + G + + L+ E+ + A + G E GL +T+ Sbjct: 206 AVGVPVEQAVQGLRDAGVRILAADGAGAADLDDELDAGTMGTPTAWVFGNEAWGLPEETR 265 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 266 ALADAVVRVPIHGKAESLNLATAAAVCLY 294 >gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] Length = 304 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 31/254 (12%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94 N +++H + G V A+ + ++ + T+ AL R WD + V Sbjct: 59 NARAKH----RRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHGEIWDEAVAVGLYVH 114 Query: 95 TVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 Q +D +V E V AL TA + ++L+ VL DP Sbjct: 115 VTTQQVMDAMSPDAQGLLAVVATEEVTGSEALTTA---------LEGARLVAVLAQAQDP 165 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G I+R+A A D ++ + + + +S +G+L H+P + L DA+ +HS Sbjct: 166 GNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHS 225 Query: 205 WGFQTIGLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G L++D + L+ + + A +LG E GL + A ++ + + G Sbjct: 226 AGLTV--LAADGRGDLDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKA 283 Query: 261 KALNVSNAAAVALY 274 ++LNV+ AAAV LY Sbjct: 284 ESLNVAAAAAVCLY 297 >gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 275 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 3/149 (2%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + L A + VL+++ D N+GA RSA A D ++ T + + + Sbjct: 115 PAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDAVLVTPQCADPLYRRSIRV 174 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAE 236 + G + +P+ RI N ++ + G+ GL+ + L+ D +AL+LG+E Sbjct: 175 SMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDHENLALVLGSE 234 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNV 265 G GL T + M + +LNV Sbjct: 235 GHGLMGSTDRALDRRVTIPMQHGVDSLNV 263 >gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4] gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4] Length = 266 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 15/227 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVG--K 107 GV+ V++AL + + + +L T+ A A HP V+ P P T G + Sbjct: 42 GVNAVTSALAHGT--VHELFVTERAAA--------AHPSLVEAAPRVSPITERAAAGLSE 91 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 QG+ + + P + +++L++VL V +P N G ++R A A D ++ Sbjct: 92 TVTPQGIVAVCSLVDRPLETVLASARLVVVLVDVAEPGNAGTVIRVADAAGADAVVLAGD 151 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++A+G+ H+P R N+ L + + G +T+ + LE D Sbjct: 152 TVDPHNGKSVRAAAGSTFHVPLARARNIPAVLTALRAAGLRTLAAHGYASASLETVRFGD 211 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A I G E GL + + + G ++LN++ AAAV +Y Sbjct: 212 PVAWIFGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLATAAAVCVY 258 >gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] Length = 176 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLDH+ +N+G++ R++ AF + I + +A + K+A GA E + + Sbjct: 25 LIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEETVDWEYFK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 + +A+ K+ G+ + + ++ DK A+++G E KG++ + Sbjct: 85 DTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQNVVDNCDI 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae BGR1] gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae BGR1] Length = 260 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 23/259 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ ++ + L G+H +A L+ + + T ALA + Sbjct: 7 RDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPEL-CVVTDGALAHDETR 65 Query: 85 ANLPHPFPVKTVPPQTI----DKIVGK-EAVHQGLAL----ETAPLLSPTLDAVRNSQLL 135 A V V PQ + D + G+ +V G+ L E P R + + Sbjct: 66 A------IVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPE----RVTGTV 115 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA A + + + S+ + +S GA H + I Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGA--HF-LLDIHED 172 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A + G S + ++ + +A + G EG G+ +E A + Sbjct: 173 VEAADLIARLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 233 QPGGMESLNVAAAAAVCLF 251 >gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] Length = 229 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 27/158 (17%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R + L ++++ V PHN+ AILR+ CD + ++ S +A G+ + Sbjct: 18 RMADLTVLMEAVEKPHNLSAILRT-----CDATGVFEAHAVSLKGRPRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL----------SSDSKKPLEQEIKNDKIALILGAE 236 +P ++ DA ++ + GF+ G S D KP A +LGAE Sbjct: 73 VPIRDHDSVKDAFAELRAKGFRIYGTMLGVNAVDYRSCDFTKP---------SAFVLGAE 123 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + + + M G++++LNVS AAA L+ Sbjct: 124 KWGLTAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLF 161 >gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624] gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624] Length = 258 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106 L G H A L +K+F L T+ AL D + + H F + V + + + Sbjct: 35 LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L++V DP N+G +LRSA A + II T+ Sbjct: 94 TLPC---LAIIDLPKTASTIDYNVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + + ++ GA + LTD L K F T SS L + + Sbjct: 148 GSASLWTPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G E A S+ + PG ++LNV+ A ++ + Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251 >gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 281 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL +V DP N G +LR A A D +I T Y+P +++ G+L H+P Sbjct: 123 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLYHLPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + A+Q + G + + L+ E+ + A + G E GL +T+ Sbjct: 179 AVGVPVEQAVQGLRDAGVRILAADGAGAADLDDELDAGTMGTPTAWVFGNEAWGLPEETR 238 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 179 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD+V +NIG++ R+A AF + I + +AK+A GA E + + Sbjct: 26 IVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPPHKDIAKTALGATESVNWKYFE 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 N DA+ + GF + K + + + A+I G E KG++ K + + Sbjct: 86 NTLDAVDALKKEGFTIASVEQAEKAVMLNDFEVNAETSYAIIFGNEVKGVKQKVVDASDI 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G + N+S + + L+ Sbjct: 146 VLEIPQVGTKHSFNISVSVGIVLW 169 >gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 235 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186 A+R L + L+ V+ PHN+ A++R+A A GI P +S SA+G+ Sbjct: 14 AMRQPDLTICLEEVHKPHNVSAVIRTADAI---GIHQIHAIWPDQSLRTQLSSAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + S + A+++ S G Q + SD Q +I+G E KG+ + Sbjct: 71 VQVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQAV 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 ALADHDIIIPMAGMVQSLNVSVASALILYEAQRQ 164 >gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] Length = 302 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R A CD ++ ++ L +S +G+L H+P +++S + D Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLS-VQDWF 206 Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + I +D KP + E+ + +A++ G E +GL + + Sbjct: 207 ECAAKSNIRIIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + G +++N++ +AAV L Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290 >gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301] gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301] Length = 261 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/256 (20%), Positives = 102/256 (39%), Gaps = 12/256 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + R++ +K+++ SR L GVH + A + + ++ + Sbjct: 7 ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P +P ++ + LAL + P L A + ++L+ + Sbjct: 67 GLIQTLTEIPTIMLPTLMFAELTPVASATGILAL----VKIPQLTAPEQPKFALMLEDIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G++LR+A A + + + + + S + GA +P + +NL L Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDNF 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----G 258 + + T + + L + A ++G EG GLR +T A + M G Sbjct: 183 NGNSYAT----AMHGESLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238 Query: 259 IIKALNVSNAAAVALY 274 +++LN AAA+ L+ Sbjct: 239 SVESLNAGAAAAICLF 254 >gi|159470575|ref|XP_001693432.1| predicted protein [Chlamydomonas reinhardtii] gi|158282935|gb|EDP08686.1| predicted protein [Chlamydomonas reinhardtii] Length = 145 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 14/99 (14%) Query: 111 HQGLALETAPLLSPTLD--------------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQGL L+ APL +D A + + LD V DP N+GA++RSA Sbjct: 7 HQGLVLDVAPLTWTHMDEFPPAAQAAAAAAEAGAPPPVWLALDEVVDPQNLGAVVRSAYC 66 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 G++ R S V++K+++GA+E +P NL Sbjct: 67 LGAAGVLACSRNCAPLSPVVSKASAGAVEALPLHSCHNL 105 >gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 247 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186 R + ++++ V+DPHN A+LR+A AF I+T K +SP+ L H Sbjct: 45 RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P I+ A+ + S G+Q + P+ + AL+ G E G+ + Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYLGEETIPVSDIDLSQPTALLFGNEHSGVSEEAL 159 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S AAA+ALY Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188 >gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] Length = 252 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 112 QGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QG+ +ET ++ D +R+ Q +VLD + DP N+G I+R+A F II ++ Sbjct: 83 QGIVALIETPSEVAVQEDELRD-QFSLVLDTIQDPGNLGTIIRTADWFGIKHIICSEETV 141 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + + ++ G+L H+ I ++L L+ + F T+ D + E + ++ Sbjct: 142 ECFNPKVVQATMGSLAHVS-IHYTDLHAFLKNVTLPSFATV---LDGQSIYETDFGSEGF 197 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +ILG EG G+ P T + G ++LNV+ +AA+ Sbjct: 198 -IILGNEGNGIAPDLISNKTQRITIPSFGNAESLNVAVSAAICC 240 >gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 235 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ V+ PHN+ A++R+A A + + ++ + +A+G+ + + Sbjct: 15 MRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVHAV--FLGEDNRLRGGTATGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 R ++ DA+ +M G Q I + K + I K A+++G E G+ + Sbjct: 73 VNRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADHDVIVPMVGMVQSLNVSVASALLLYEAQRQ 164 >gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] Length = 255 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L++ LD + DP N+G I+R A F I+ +K + S ++ GAL H+ I Sbjct: 102 ELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK-IHY 160 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++L LQ + G + E+ + + I LI+G EG G+RP + A Sbjct: 161 TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNGIRPAIE--AFVNE 217 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 L++P + + S + VA+ Sbjct: 218 KLYIPNYPEGRDTSESLNVAI 238 >gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B] gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] Length = 259 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 4/149 (2%) Query: 128 AVRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 AV+N + + D V DP N+G I+R+A A G+I ++ + +S G++ Sbjct: 105 AVKNEKGFYIYADKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFR 164 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQ 245 IP I ++ + L+++ + GF+ I S D+ K ++ ++++I +G EG G+ + Sbjct: 165 IPVILDKDM-NKLKELKAQGFKLIVSSLDTNKNF-FDVDLSQMSIIAVGNEGNGVSDELY 222 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + MPG ++LNV+ AA++ + Sbjct: 223 NLSDEKVKIPMPGGAESLNVAVAASIMAF 251 >gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 232 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ A++R+A A + + S + SA+G+ + Sbjct: 14 AARQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEVHAV--WPGSRMRTMVSSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 SN+ DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQQALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] Length = 255 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L++ LD + DP N+G I+R A F I+ +K + S ++ GAL H+ I Sbjct: 102 ELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK-IHY 160 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++L LQ + G + E+ + + I LI+G EG G+RP + A Sbjct: 161 TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNGIRPAIE--AFVNE 217 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 L++P + + S + VA+ Sbjct: 218 KLYIPNYPEGRDTSESLNVAI 238 >gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 254 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 115/268 (42%), Gaps = 56/268 (20%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ + + G H V AL S K ++LAT+ AL+RL A L + Sbjct: 19 QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138 +G ++ + ++ + +NSQ + ++L Sbjct: 69 -------------DEGKLIKISQSVASHFSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL 115 Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194 D + DP N+G I+R+A A DG+I T Y+P + +S G+ H+ I+ ++ Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170 Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L DA+ + + L + K L ++ALI+G E G+ P+ A + Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLY 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G ++LN + AA + +Y HF+ Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254 >gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] Length = 253 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 H V+TV Q ++ + + LA+ + LSP + +++LD V DP Sbjct: 63 HNVSVETVTAQELEGLGSFQTNDSSLAVAKTKENAFLSPAA-----KEYILMLDDVRDPG 117 Query: 146 NIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 N+G I+R A + I+ TT Y+P V+A +A G+ + + ++L ++ Sbjct: 118 NLGTIIRIADWYGITKIVCSRDTTDIYNPK---VIA-AAKGSFTRVN-LYYTDLIQYFEE 172 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q IG E E D +I+G E G+ + ++ T+ + G + Sbjct: 173 IKDTGRQVIGAFLGGDSLYEFEYPADGGIIIMGNESNGISEQVEQFVTNKIMIPRFGAAE 232 Query: 262 ALNVSNAAAVAL 273 +LNV A AV L Sbjct: 233 SLNVGIATAVML 244 >gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 229 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 27/171 (15%) Query: 120 PLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSP 170 PLL D + R S L ++ + V PHN+ AILR+ CD I + + Sbjct: 2 PLLPRRFDRIKSVLNRRMSNLTVLAEEVEKPHNLSAILRT-----CDAIGILQAHAVFKQ 56 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229 S+ +A G+ + + ++ N+ A++ + GF+ G + L ++ K+ ++ Sbjct: 57 SKIPTFNSTAQGSQKWVKLVKHPNIEVAIKSLKGEGFKIYGTN------LNEQAKDYRLF 110 Query: 230 ------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A +LGAE GL + M G++++LNVS A+A L+ Sbjct: 111 DYKGPTAFVLGAEKWGLSQLATSLVDESIFIPMRGMVQSLNVSVASATLLF 161 >gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 260 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 4/144 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + D N+G+ILRSA AF + K + S + ++ GA H + L Sbjct: 116 VVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGA--HFALHLVEGL 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A+ + + + SS L + ILG EG+G+ Q+ AT + + Sbjct: 174 --AVDDIDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIA 231 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 PG ++LNV AAA+ L+ + H Sbjct: 232 QPGGEESLNVGAAAAICLHASAAH 255 >gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 291 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 13/188 (6%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VP ++K+ K + LAL P + + + L++V D P N+G I+RS Sbjct: 83 VPLHLLEKLSNKAESSELLALVAMPEDNLARIPLTQNLLVVVFDRPASPGNLGTIIRSCD 142 Query: 156 AFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-----WG 206 A G+I T Y P +++G+ +P +R+ + D + S Sbjct: 143 ALEAHGLILTGHAVDLYDPET----ISASTGSFFALPTVRLPSQRDIEPWLQSAKKKLGA 198 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q IG +++ + Q LI+G E G+ +E ++ + + G +LNV+ Sbjct: 199 LQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMSAAYKELCDAVVQIPLVGSASSLNVA 258 Query: 267 NAAAVALY 274 A ++ LY Sbjct: 259 CATSICLY 266 >gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] Length = 231 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186 A+R L + ++ V+ PHN+ A++R+A A GI PS + +++G+ Sbjct: 14 ALRQHDLTVCMEQVHKPHNVSAVIRTADAV---GIHEVHAVWPSVRMRTMVSASAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + N+TDA+ + + G Q + + +K +EI + +++G E G+ + Sbjct: 71 VKVKTHRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITAEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 ALADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] Length = 257 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 7/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 P + V P+ +I E QG+ L + TL + R+ +++L+++ DP N+G Sbjct: 65 IPFEEVSPKVFREISDTET-PQGI-LSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLG 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R+ GII ++ + + +S G++ +P+ +L + ++ + Sbjct: 123 TLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVH 182 Query: 209 TIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + ++ DKI A ++G EG GL + A + M G +++LN + Sbjct: 183 VYAAHLNGTDYTDESY--DKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAM 240 Query: 268 AAAVALY 274 A + +Y Sbjct: 241 AGGLLMY 247 >gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127] gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127] Length = 351 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L LD RN L++LD+VN+ NIG +LR+ F I+ SA + A Sbjct: 196 LQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVADN-VENLYSAASMRVAE 254 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALIL 233 G E+I + ++ AL + G+Q + +S + + PL++ +K+ +L Sbjct: 255 GGSEYIRVLETDDIDSALMHLRKSGYQVMHVSHNKQGDPLDKVRLKNKVVFVL 307 >gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] Length = 230 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + L+ V+ PHN+ A++R+A A I + +E L +A+G+ + Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQIHAI--WPTTEMYTLLSAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 ++ DA+Q S G Q + K +EI + +++G E G+ + Sbjct: 72 QVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKQALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] Length = 229 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ +N+ AI+R+A A GI P+E +L +++GA + Sbjct: 16 RQTDLTLCLEEVHKANNVSAIVRTADA---TGIHKIHAVWPTEQMQMLGHTSAGARNWVD 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 N+ DA + G Q + + SD+ + A+ILG+E G+ K Sbjct: 73 VETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAM 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 344 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N+G + R+ A G++ + + A++A+GALE +P +++ Sbjct: 185 LIVALDQVQDPGNVGTLARTLYALGAAGLVVVRHGGAALGGAAARAAAGALEKLPVAKVT 244 Query: 194 NLTDALQKMHSWGF----------QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 NL AL + G+ +T G S + P + ++ + L+LG E G+RP Sbjct: 245 NLARALDEADEAGYTIYAAGGAAPETDGKPGSGPRNPFTEPLRTPAV-LVLGNEDSGIRP 303 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + M +LNV+ A A+ Sbjct: 304 NVAKRCHFTLSIPMARDFDSLNVAQAGAI 332 >gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus] gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 247 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186 R + ++++ V+DPHN A+LR+A AF I+T K +SP+ L H Sbjct: 45 RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P I+ A+ + S G+Q + P+ + AL+ G E G+ + Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYLGEGTIPVSDIDLSQPTALLFGNEHSGVSEEAL 159 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S AAA+ALY Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188 >gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] Length = 180 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HNIGA+ R++ AF + I + + K+A GA + + Sbjct: 28 LVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDWKYCK 87 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 +A+ ++H+ G+ + + + + N K A+++G E KG++ + + Sbjct: 88 QTQEAVNELHAEGYTVLAIEQCEGSTMLDHLVLDPNKKYAIVMGNEVKGVQQEVVDMCDG 147 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS + L+ N K Sbjct: 148 CIEIPQYGTKHSLNVSVTTGIVLWEFANKMMK 179 >gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] Length = 180 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188 L+++LD+V +NIG++ R +CD + K Y +A + K+A GA + + Sbjct: 25 LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245 + + N A++K+ G I + + + + K A+I G E KG+ + Sbjct: 80 WEYVENTLSAVEKLKEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S +A +A++ Sbjct: 140 SASDEVIEIPQYGTKHSLNISVSAGIAIW 168 >gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 267 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 3/133 (2%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ILR+A A G++ + P + A L +++ GA+ + +R + A K Sbjct: 124 DPGNLGTILRTADAVGASGVMLLDHATDPYDPAAL-RASMGAIFALQVVRATFAEFAAWK 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G +G + + + + + L++G+E +GL P Q M HL M G Sbjct: 183 -RAQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQQALCDQMVHLPMCGRSD 241 Query: 262 ALNVSNAAAVALY 274 +LN++ A V LY Sbjct: 242 SLNLAVATGVLLY 254 >gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 24/261 (9%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++++KMQS +K R +S + G H V A+ + + ++ N L +L+ D Sbjct: 13 KEWRKMQS--KKGRLSSG--QYIIEGWHIVDEAIKHDQQIDAVIVTDANFLDQLEVD--- 65 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + P+ I E A+ T ++ LM LD++ DP NI Sbjct: 66 PAVTDTYLITPEVAKHISATETPQGVFAVLTTENYHESIPEKLGGSWLM-LDNIQDPGNI 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQK---- 201 G ++R+A A +G+I K + + + +S G+ H+ ++ A K Sbjct: 125 GTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQGSQFHVRLYSGDLAVWMAAFNKHNVP 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 ++ +S D +P +Q AL++G EG G+ + ++ M G + Sbjct: 185 VYGTELNDQAISYDDVEPTKQ------FALVMGNEGNGVSADLLDKTDQNLYIPMNGEAE 238 Query: 262 ALNVSNAAAVALYITQNHFAK 282 +LNV+ A + ++ HF K Sbjct: 239 SLNVAVATGILIF----HFVK 255 >gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255] Length = 597 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 42/174 (24%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD V D N+GAI+RS+ D I+ R S S + KS++GA E++P + + Sbjct: 402 IVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPILHVK 461 Query: 194 NLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKI------------------ALIL 233 N D +Q+ + W F ++D+ PL ++ D I +++ Sbjct: 462 NEVDFIQRSQQNGWRF----YAADA--PLPGSVQLDHIPADGDQSGAKLPITTAPSVIMM 515 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGI--------------IKALNVSNAAAVAL 273 G+E GL + A ++ + +PG I +LNVS AAA+ + Sbjct: 516 GSEATGLSSHIKSHANAI--ISIPGARQSSILGVESDPARIDSLNVSVAAALLM 567 >gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large ribosomal RNA ribose methylase, putative; ribose methyltransferase, putative [Candida dubliniensis CD36] gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36] Length = 440 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 62/291 (21%), Positives = 105/291 (36%), Gaps = 68/291 (23%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +++G H V A L R++ L N + A + K + + I+ K Sbjct: 146 YVFGTHPVKAVLAAGKRRMLDLYTFNNDDPDIVELAVEKYGITPKRLKDKNALNILCKNG 205 Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------------------------------------ 133 VH G+ L+T L P + V +++ Sbjct: 206 VHNGVVLKTNKLEIPYIKEVGHAENGEYKLAIESLEDDSVNIETKTVIRDGNEEVEELYP 265 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD + DP N+G+ILRSA F D I+ + V K+++GAL+ I + Sbjct: 266 LSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQTG 325 Query: 194 NLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKND------------------------ 227 + + + G+ I S KP E E+ +D Sbjct: 326 SSLKFIDSVRQSGWHVISTSGRPTGAKPRE-EVNDDLEIPEPHLKNKFIELQDLRTILRK 384 Query: 228 -KIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVAL 273 + LI+G+EG G+R + + + + I+ +LN A V L Sbjct: 385 TPVMLIIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435 >gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] Length = 281 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 13/252 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARL-DWDAN 86 DY+ ++ + R LF+ V L + R + +L ++ +L R+ D Sbjct: 30 DYRDVRERDLVGR-----RGLFMAEGEVVLRLLTAHGGRDLHSVLVSQASLPRIADALDL 84 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRNSQLLMVLDHVN 142 LP PV +D IVG +H+G LA+ A P L ++ L++ L + Sbjct: 85 LPRNVPVHVAGQAVMDAIVGFH-IHRGILAVGRARPQVPAPELLASLPERALVVALQGIA 143 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 + N+G I R+A AF D ++ + + GA +P R + ++ + Sbjct: 144 NHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSVGASLIVPTARAGTTAEMMEAI 203 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + GF + LS ++ L + + A + G EG GL P+ + +++ + M + Sbjct: 204 AAAGFDLVALSPSGRERLSDIVPGGRQAALFGTEGPGLPPEVLASTRTIS-IPMAASFDS 262 Query: 263 LNVSNAAAVALY 274 LNV+ + + L+ Sbjct: 263 LNVATTSGIVLH 274 >gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] Length = 269 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + ++ ++V+D V D NIGAI RSA A D ++ T+ + + + G + Sbjct: 114 DVCQKARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFL 173 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPK 243 +P+ + + +L + GF+T ++ +D+ ++ + ++A+++G EG GL + Sbjct: 174 VPW---TWMDGSLGDLGRLGFRTAAMALTDNSISIDNPVLATEPRLAIVMGTEGDGLSQE 230 Query: 244 TQETATSMAHLHMPGIIKALN 264 T A + + M + +LN Sbjct: 231 TIAAADYVVRIPMSHGVDSLN 251 >gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae] Length = 272 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 3/158 (1%) Query: 120 PLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 P+L +A++ N L+ V +P N G ++R A A D +I +S + Sbjct: 104 PVLWSAREALKGNPSLVCVAVETGEPGNAGTLVRVADAMGADCVIFAGTTVDPQSPKAVR 163 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAE 236 +++G+L HIP +R ++ Q + + Q + ++ + L+ E+ A ++G E Sbjct: 164 ASAGSLFHIPVVREPDMQKVWQILRARNVQMLATAAQGEINLDTAGELLEKPTAWLMGNE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + A + + G ++LN++ AA++ +Y Sbjct: 224 AHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMY 261 >gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 174 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 14/156 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD++ +NIG++ R+A AF + I + + K+A GA E++ + Sbjct: 25 LILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGATENVAWEYAE 84 Query: 194 NLTDALQKMHS-----WGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 N + +QK+H W + + DS +P KN + A ILG E +G+ + + Sbjct: 85 NTLEVVQKLHKENVSVWAIEQTEKAIFLDSFQPK----KNTRHAFILGNEVRGVSQEAVD 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LN+S A V ++ ++F K Sbjct: 141 ACGQALEIPQFGTKHSLNISVATGVVVW---DYFTK 173 >gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 258 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106 L G H A L +KIF L T+ ALA D + H F + V + + + Sbjct: 35 LEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDLQKVMELHQGHVFVISEVLYKDLSTL-- 91 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L+++ DP N+G +LRSA A + II T+ Sbjct: 92 -GTTLPCLAIIDLPKTASTIDFGVDT---LILENIQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + L + L K F T SS L + Sbjct: 148 GSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQIPVFVT---SSHRSTSLYSKDLT 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G E A ++ + PG ++LNV+ A ++ + Sbjct: 205 QPCVWILGNEGQGASEYALEHAQAVT-IPQPGGQESLNVAIAGSICFF 251 >gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 200 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 TL + +++VLD++ +N+G+I R++ A + + T E L K+A GA Sbjct: 16 TLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQLHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRP 242 E +P+ + + + + G+ L ++ +D +ALI+G E G++P Sbjct: 76 ETVPWEYVRDPVPLVASLRKAGYTIAALELTDTPTYTHQLPDDIFPLALIVGHELYGVQP 135 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E A + G ++LNV+ A +A++ H+ + Sbjct: 136 ALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRR 175 >gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 180 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 5/158 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V+ + L++VLD++ +N+G++ R+ AF + + + + + K+A GA + + Sbjct: 20 VKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALGAEDSVN 79 Query: 189 YIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245 + + S +T ++++H G+Q I + + + E K K A+ILG E G+ + Sbjct: 80 W-KYSPITLRIVEELHQKGYQIIAVEQAEESIMLDEFQSKYSKQAIILGNEVHGIDQEVM 138 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 + + G +LNVS A + ++ IT+N F + Sbjct: 139 NQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNSFIR 176 >gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 253 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-N 194 +VLD V DP N+G I RSA A DG++ + S + ++ GA +P + Sbjct: 112 LVLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLPVWETTVE 171 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L K L D+ + ++ + A+++G+EG+G+ + A + Sbjct: 172 ELEGLLKTSQIPLYATALREDTVDVRQADL--GRAAVVIGSEGRGVSQALLDRAEQTVKI 229 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LN ++AA V L+ Sbjct: 230 PMRERCESLNAASAAVVVLW 249 >gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P] gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P] Length = 225 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R +VL+ + PHN A++R+ F + +Y+ S +AK + L Sbjct: 29 RTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENKYNTKVSRHVAKGSQKWLNQYR 88 Query: 189 YIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQE 246 Y N + L + G+Q I S + + Q+ K A + G E +G+ E Sbjct: 89 YRSDGDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAFVFGVEAEGVSDCVIE 148 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LN+S AAA+ L Sbjct: 149 NADGFLKIPMVGFTESLNISVAAAIIL 175 >gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17] gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17] Length = 289 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD ++ + + ++ +G+L HIP +T + Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189 Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245 + W +T+ +D ++P E Q++ A+I G E +GL P Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEVLRDQDLSGVGKAVIFGNEARGLEPGLL 249 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] Length = 179 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HN+G++ R+A AF G+ + K+A GA + + + Sbjct: 25 LVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALGAEDSVDWEYFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATS 250 + A++ + G+ + +PL Q + D K AL+LG E KG+ + + + Sbjct: 85 DPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYALVLGNEVKGVTQSVVDASDA 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS +A + L+ FAK Sbjct: 145 AVEIPQYGTKHSLNVSVSAGIVLW----EFAK 172 >gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 RN + + LD V DP N+G I+R+ A G+I + S ++ G++ IP Sbjct: 127 RNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFSIPL 186 Query: 190 IRISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKT 244 R +W F+ + + + K ++ + KN + L++G E +GL Sbjct: 187 YRFDE-----SAFLNWSAHFKGMVVGTHLKGSIDYRKIDFKNGPVILLMGNEKQGLPDTL 241 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A A+ LY Sbjct: 242 ANRCDQLARIPQSGRADSLNLAVATAIMLY 271 >gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114] gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] Length = 229 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA- 174 LE ++ L A R + L + L+ V+ +N+ AI+R+A A GI P+E Sbjct: 3 LERYQRITSVLKA-RQTDLTLCLEEVHKANNVSAIVRTADAT---GIHKIHAVWPTEQMQ 58 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233 +L +++GA + N+ DA + G Q + + SD+ + A+IL Sbjct: 59 MLGHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIIL 118 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+E G+ K A + M G++++LNVS A+A+ LY Q Sbjct: 119 GSEKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] Length = 229 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 19/154 (12%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R + L +VL+ V+ PHN+ AILRS CD + + + S +A G+ + Sbjct: 18 RMADLTVVLEAVDKPHNLSAILRS-----CDAVGVLEAHVVSLKGRPRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + + L ++ GF+ G L +D+ + + A +LGAE GL Sbjct: 73 VPLRPHERVEEVLGQLKQQGFRLYGTQLGTDAVDYRQCDFTG-PTAFLLGAEKWGL---- 127 Query: 245 QETATSMAH--LHMP--GIIKALNVSNAAAVALY 274 E A +M L +P G++++LNVS AAAV L+ Sbjct: 128 SEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLF 161 >gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ] Length = 256 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 4/183 (2%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + T + + +I+G H +AL P +LD +++ +++L+ + P NIG I+R Sbjct: 73 IYTADKEVMQEIIGHNLHHGVMALARRPEY-ISLDELQDK--VLILNGLTSPENIGTIVR 129 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + AF+ + II KR + + G + + + ++L L+K+ S G + I Sbjct: 130 NCAAFNINSIIIDKRTCSPYVRRCIRVSMGNIFRVKVYKSNDLKSDLKKLQSLGHRVIST 189 Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + L + K +I+G+EG G+ E + + + + + LN + ++++ Sbjct: 190 ANQEGAIDLPKYSFPKKSCVIIGSEGHGIEKDILEVSDDIIRIPIDDTVAHLNAACSSSI 249 Query: 272 ALY 274 LY Sbjct: 250 FLY 252 >gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 112] Length = 184 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +P L A R + +VLD V D N+G+ILRSA A + + + + S+ + +SA G Sbjct: 26 APALPA-RVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMG 84 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A H + I DA + S + + +A + G EG G+ Sbjct: 85 A--HF-LLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSA 141 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +E AT + PG +++LNV+ AAAV L+ Sbjct: 142 RWREAATHRVTIPQPGGMESLNVAAAAAVCLF 173 >gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 266 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 121 LLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LSP + ++N +++++ D + DP N+G I+R A D I ++ + + + Sbjct: 101 FLSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVIR 160 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++G++ +P I IS+ ++ W I SK E+ K + LILG E Sbjct: 161 ASTGSIFRVP-IWISDDKTFVEFFKDWKI-VIADPKGSKLYFEENFK-ESFVLILGNEAW 217 Query: 239 GL-RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ + K + + + + + +LNVS AA+V L+ Q Sbjct: 218 GIKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQ 259 >gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 289 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 10/144 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP N+G I+R+A A G+I + S ++ G++ +P R+ Sbjct: 133 IALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGSIFSVPLYRLDE- 191 Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATS 250 +W F+ + + + K L+ + KN I L++G E +GL Sbjct: 192 ----SAFLNWSAHFKGMIVGTHLKGSLDYRTLDFKNGPIILLMGNEKQGLSDLLTNRCDK 247 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A AV LY Sbjct: 248 LARIPQSGRADSLNLAVATAVMLY 271 >gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 289 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD ++ + + ++ +G+L HIP +T + Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189 Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245 + W +T+ +D ++P E Q++ A+I G E +GL P Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 249 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63] Length = 260 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + D ++ + LD++ DP N+G ILR+A A + GI+ + S + + + G Sbjct: 106 TACFDKIKTGDKFLALDNLQDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMG 165 Query: 183 ALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEG 237 A+ +P++ IS +A ++ S+ + S+D + P + +G EG Sbjct: 166 AVFRLPFVVSDTISGYLNAHSELESYA-AVVSASADKITTTPFVS-----PCIVAVGNEG 219 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL+ +T + M G ++LN + AA++ ++ Sbjct: 220 NGLKEETISACKHKITIPMEGRAESLNAAVAASIIMW 256 >gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 234 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186 R + ++L+ + PHN A+LRS +F I+ K ++ ++S + L Sbjct: 32 RTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTITQSVTIGSDRWLTLYR 91 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKT 244 I+N + L+++ + G+ I ++ K+ +E+ N K+AL+ G+E GL Sbjct: 92 YNEQSINNTEECLKRLKNEGY-VIAATTPYKEHITIEELSVNTKVALMFGSEINGLSEYA 150 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G ++ N+S +AA+ LY Sbjct: 151 KNNADVSVKIPMVGFSESFNISVSAALCLY 180 >gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 7/187 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 P + V P+ +I E QG+ L + TL + R+ +++L+++ DP N+G Sbjct: 36 IPFEEVSPKVFREISDTET-PQGI-LSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLG 93 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R+ GII ++ + + +S G++ +P+ +L + ++ + Sbjct: 94 TLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVH 153 Query: 209 TIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + ++ DKI A ++G EG GL + A + M G +++LN + Sbjct: 154 VYAAHLNGTDYTDESY--DKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAM 211 Query: 268 AAAVALY 274 A + +Y Sbjct: 212 AGGLLMY 218 >gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 257 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 3/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD + DP N+G +LRSA A +I + S +A++A GA +P +R+ Sbjct: 111 LRLILDEIQDPGNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHFIVP-LRLL 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ++ G+ S +++P ALI+G E G+ + A S Sbjct: 170 PWDDIATELA--GYTVYAADSAAQQPYYTVDWRQPAALIIGNEAHGVSTAARTLAHSTIT 227 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G I++LN A ++ L+ Sbjct: 228 IPMAGPIESLNAGVAGSIILF 248 >gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] Length = 177 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIGA R A AF + I + + K+A GA E + + + Sbjct: 25 LILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAEETVIWEYVP 84 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250 + LQ + + G+ + L +D PL+ Q N+K AL+ G E G++ + Sbjct: 85 DTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVFGNEVFGIQEEALAACDL 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281 + G +LNVS + +A++ +T++ F Sbjct: 145 ALEIPQHGTKHSLNVSVSMGIAIWELTKDKFG 176 >gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 249 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 65/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ V +++P N G ++R A A D ++ + ++++G++ IP I Sbjct: 99 LVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHH 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + ++ G Q + PL++ + A + G E GL AT+ Sbjct: 159 DAVGVVTQLKGSGLQVLATVLGGSVPLDEVDLSGPTAWLFGPEAHGLPADVVALATAGVE 218 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AAA+ LY Sbjct: 219 IPMAGGAESLNVASAAAICLY 239 >gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 184 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD+V HN+G+I R+A AF + ++ ++ K+A GA E +P+ + Sbjct: 27 LTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPWRHLD 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250 + + L++ + G + L + PL Q +D+ A LI+G E G+ + + A Sbjct: 87 SAIEFLERCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADD 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A +A+Y Sbjct: 147 CLEIPQHGTKHSLNVSVATGIAIY 170 >gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] Length = 231 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A GI P+ E SA+G+ Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQIHAIWPTPEMYTRLSSAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + S++T+A+ + S G Q + K +EI + +++G E G+ + Sbjct: 71 VQVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + + +A SA+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 N++DA+ + + G Q + K +EI + +++G E G+ + Sbjct: 72 EVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEALS 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQ 162 >gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] Length = 180 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188 L+++LD+V +NIG++ R +CD + K Y +A + K+A GA + + Sbjct: 25 LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ 245 + + N ++K+ G I + + + +++ K A+I G E KG+ + Sbjct: 80 WEYVENTLSVVEKLKEQGVYIISIEQAENSTMLNDFQSNGKQKYAIIFGNEVKGVEQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S +A +A++ Sbjct: 140 SASDEVIEIPQYGTKHSLNISVSAGIAIW 168 >gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 252 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 66/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ V +++P N G ++R A A D ++ + ++++G++ IP I Sbjct: 99 LVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHH 158 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D + ++ G Q + L++ + A + G E GL + AT+ Sbjct: 159 DAADVVTQLKDAGLQVLATVLGGSVSLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVE 218 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AAA+ LY Sbjct: 219 IPMTGGAESLNVASAAAICLY 239 >gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 269 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHI 187 S L++VL+ V P N+GA+LRSA A D +I T ++P+ L +S+ GA+ + Sbjct: 119 SPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPN----LIRSSIGAIFTV 174 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + S+ + + + + P A+++G E GL ++ Sbjct: 175 PTVACSSQA-CMNFLKERNIKILTAQLQDSAPYYDSDMRGGTAIVMGTESTGLTDAWRKA 233 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 A + + M G + +LNVS +AA+ ++ + Q F Sbjct: 234 ADAHIRIPMLGQLDSLNVSVSAAILMFEAVRQRSF 268 >gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti 1021] gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 288 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + LD V DP N+G I+R+A A GII + S ++ G++ IP Sbjct: 131 QEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPI 190 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R +N D ++ + G Q + + S + K+ + L++G E GL + A Sbjct: 191 AR-ANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREA 249 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A + G +LN++ A + L+ + H Sbjct: 250 GALARIPQAGRADSLNLAIATGIMLFEARRHL 281 >gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 358 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + K+ G E H G+ + ++ P L LD L++LD VN+ NIG IL Sbjct: 174 VESDELTKVSGTEH-HGGICMLVKKSYPFTLQGYLDVPHQEDCLVLLDGVNNAQNIGGIL 232 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F ++ + S + SAV + A G E++ + + +AL ++ G+Q I Sbjct: 233 RTCAFFGVKNMVLEEAESLN-SAVTLRVAEGGAEYVRVLETDDSRNALAQLRHAGYQIIH 291 Query: 212 LSSD 215 +S+D Sbjct: 292 VSND 295 >gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580] gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580] gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2] gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580] gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580] gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2] Length = 248 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 15/215 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +D+KK+ + ++++ + + G H V AL P + +++ A D+ A + Sbjct: 13 KDWKKLHAKKERTKTNT----FLIEGEHLVEEALKTPGV-VKEIMVADEA----DFPAMI 63 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + I E A+ P P + L++ D V DP N+ Sbjct: 64 DESVARYVLSADAFSAIAETETPQAVAAVCRMPESGPF-----QYEKLLLADAVQDPGNL 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A D ++ + +A +SA G+ HIP ++ L++ ++++ Sbjct: 119 GTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPILK-RELSELIEELKGKSV 177 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 G + P + + AL++G EG G+ P Sbjct: 178 PVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDP 212 >gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] Length = 285 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 25/206 (12%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM--------------------- 136 PQ + ++ K GL LE + + T+ N Q+++ Sbjct: 76 PQ-VGQVAAKAVARGGLVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEGETY 134 Query: 137 -VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 LD V DP N+G I+R+A A GII + S ++ G++ +P R S Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVARASA- 193 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L+ S G Q + S S + ++ + L++G E GL + A ++A + Sbjct: 194 EDFLRWQRSAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAELAREAGALARI 253 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 G +LN++ A + L+ + H Sbjct: 254 PQAGRADSLNLAIATGIMLFEARRHL 279 >gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus] Length = 354 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 10/162 (6%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L PTL Q +++ D + DP N+G ++R+A D ++ T + +++ Sbjct: 171 LPPTL------QTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASM 224 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL- 240 GA +P +R+ + + ++ M + G + ++ AL++GAE +GL Sbjct: 225 GASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLS 284 Query: 241 ---RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 R + + + + + G +++LN + A A+ L Q Sbjct: 285 DAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQ 326 >gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334] Length = 253 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + DP N+G ++R+A A ++ + + + ++ G+ H+ + + Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ +H G G + K I+ +++ ALI+G EG G+ P + + + Sbjct: 168 LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGMDPVLLQNTDTNLY 227 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AAAV ++ Sbjct: 228 IPIRGKAESLNVAVAAAVMMF 248 >gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] Length = 217 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLA--KSASGALEH 186 R L ++++ VN PHN AILRS CD + + ++ P ++ L + SG+ E Sbjct: 16 RQPTLTVLMEEVNKPHNFSAILRS-----CDAVGVWEAHAVPPKNGKLPTYNATSGSAEK 70 Query: 187 IPYIRISNLTDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242 ++R+ + DA ++++ GFQ + ++ +E+ + ++LGAE G+ Sbjct: 71 --WVRVQSHADAPSAVRELQGRGFQVLATHLSARSVDYRELDYTRPTCVLLGAEKWGVSE 128 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + A + + M G++++LNVS A A L+ Q Sbjct: 129 EAADAADANVVIPMLGMVQSLNVSVACATILFEAQRQ 165 >gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] Length = 290 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R ++VLD V DP N G I+R+A A D ++ SA +++ G++ H+ Sbjct: 129 AMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMGSVFHV 188 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 P +R + T + + + + D + +P + ++AL G EG G+ + + Sbjct: 189 PVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNEGNGVSDEVRR 248 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G ++LNV+ AAA+ LY Sbjct: 249 MAEAKLFIPMFGKAESLNVATAAALVLY 276 >gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 279 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD ++ + + ++ +G+L HIP +T + Sbjct: 125 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 179 Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245 + W +T+ +D ++P E Q++ A+I G E +GL P Sbjct: 180 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 239 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 240 GRCDDIVRIPLYGKAESLNLATSAAIML 267 >gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] Length = 291 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 45/298 (15%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ IS + E I S RRN K+++S ++ + + + L G H V Sbjct: 1 MSAISGAEGEPISS---------RRNPL-IKRIRSLQSRTGREKE-QCVLLEGTHQVQEL 49 Query: 61 LNN--PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID---KIVGKEAVH 111 L P Q+LAT +N A L A LP P ++ + + + V + V Sbjct: 50 LAQALPWTDPLQVLATPLWFQNHQALL---AGLPGPVQLQLMSSEALGAALSTVHPDGVA 106 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P P ++ LD + DP N+G +LR+A+A + + P Sbjct: 107 CLWPFNRLPSPGP------QPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPL 160 Query: 172 ESAVLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSK 217 S V+ +SA+GA+ +P R + L AL++ + G Q + + Sbjct: 161 GSKVV-RSAAGAILTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQV 219 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +P Q L+LG EG GL P+ + L +++LNV+ AAAV L + Sbjct: 220 EPYWQLDWCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVA-AAAVPLLL 276 >gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] Length = 230 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183 A R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ SA + S Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTEMYTRLSSAAGSNSWVQV 73 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242 H P+I TDA+ + S G Q + K +EI + +++G E G+ Sbjct: 74 KTH-PHI-----TDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISE 127 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + M G++++LNVS A+A+ LY Q Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W] gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II] Length = 253 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + DP N+G ++R+A A ++ + + + ++ G+ H+ + + Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ +H G G + K I+ +++ ALI+G EG G+ P + + + Sbjct: 168 LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGMDPVLLQNTDTNLY 227 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AAAV ++ Sbjct: 228 IPIRGKAESLNVAVAAAVMMF 248 >gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 286 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A GI+ + S ++ G++ +P Sbjct: 129 REGETYVALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPL 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 R +N D L+ + G Q + N K + L++G E GL + A Sbjct: 189 AR-ANAEDFLRWQRAAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLPVELAREA 247 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A + G +LN++ A + L+ + H Sbjct: 248 GALARIPQSGRADSLNLAIATGIMLFEARRHL 279 >gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B] gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B] Length = 236 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L+ +++GA + Sbjct: 25 RQTDLTLCLEEVHKPNNVSAVIRTADA---TGLHKVHAIWPDKMRTLSHTSAGARNWVEV 81 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 82 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 141 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 142 DQDIIIPMVGMVQSLNVSVASAVILYEAQRQ 172 >gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4] gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4] Length = 276 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 3/149 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V +Q+L VL+ V D N+GA+ R+A A G++ S + + G + +P Sbjct: 118 VDGTQVLAVLEGVGDHENLGALFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLE--QEIKNDKIALILGAEGKGLRPKTQ 245 + + L + + GF L+ + PL +E IAL+LGAEG GL + Sbjct: 178 FATFDSWPGGLDVLRARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAI 237 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M + +LNV+ AAA+A + Sbjct: 238 EAADVAVRVEMVSGVDSLNVATAAAIAFH 266 >gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] Length = 227 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L+ +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 EQDIIIPMVGMVQSLNVSVASAVILYEAQRQ 163 >gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2] gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2] Length = 291 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISN 194 + LD + N+G+I RS A +I +P E+A + K+A G + +P+ + + Sbjct: 136 IALDGLRSLFNVGSIFRSCDAAGFSSLILGN--TPGRENAAVRKTAMGTADWMPHTQTVD 193 Query: 195 LTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L L M + G+ + +++ KP + + L++G E G+ + H Sbjct: 194 LAQTLVDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEYGISSHVLAVCDQVVH 253 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +LNV+NAAA+ ++ Sbjct: 254 IPMFGRKNSLNVANAAAILMF 274 >gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 174 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD++ N+G++ R A AF + I+ +S L ++A + + + Sbjct: 19 IILLLDNITSEANLGSMFRLADAFGVEKIVFCGSEPNLQSNRLKRTARNTFKTVQFEFFE 78 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATS 250 + ++ + + G++ I + + S P+ N+ K+ LI G E G+ + Sbjct: 79 DSVKTIKNLKTEGYKNIAIEITSSSNPIGSFSLNEDEKLVLIAGNERHGISAEVLNLCDE 138 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + H+ M G ++NV+ + +ALY F K Sbjct: 139 LYHIEMFGENSSMNVAQSVGIALYEITKAFNK 170 >gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115] gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer ribonucleate guanosine 2-methyltransferase) [Deinococcus deserti VCD115] Length = 222 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIP 188 R L +++D VN PHN+ AI+R+ CD + + ++ P + LA + E Sbjct: 17 RQPTLTVLMDEVNKPHNLSAIIRT-----CDAVGVLEAHAVPPKGGPLASFSGHTYEATS 71 Query: 189 -----YIRISNLTDALQKMHSW---GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ + + TDA+ +H+ GFQ + LS S E + ++LGAE Sbjct: 72 GSAHKWVPVHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTR-PTCVLLGAEKW 130 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + A + M G++++LNVS AAA L+ Q Sbjct: 131 GVSDEAADAADHNIVIPMFGMVQSLNVSVAAATILFEAQR 170 >gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] Length = 227 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L+ +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 289 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 28/208 (13%) Query: 92 PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDP 144 PV P + ++++ G +H+G LA P L + + ++Q ++VL+++ D Sbjct: 86 PVFVAPEEVLERMTGFH-LHRGALAAMQRPQLPSVVQLLTSAQPPQPTRRVVVLENLVDH 144 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA RSA A D ++ T + + + G + +P+ R+ + + + Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLESWPGDIALLRD 204 Query: 205 WGFQ--TIGLSSDS------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 GF ++ L DS + P + ++A+++G EG GL T + Sbjct: 205 AGFTLASLALCEDSISLDDFAALPALRGP------DARLAIVMGTEGHGLGKHTIAASDY 258 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AV + T+ Sbjct: 259 TVKIPMDHGVDSLNVAAASAVVFWATRG 286 >gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 260 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 109/271 (40%), Gaps = 48/271 (17%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIF------QLLA-- 73 R++ K+++ +Q S + ++L G H SAAL P+ +F Q LA Sbjct: 11 RDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAEY 70 Query: 74 ----TKNA-LARLDWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 TKN +A + W + L P P+ V P P Sbjct: 71 ARAATKNVVIADVLWSDISALESPAPMGFVLPL------------------------PEA 106 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + +VLD + D N+G+ILRSA AF + K + S + ++ GA H Sbjct: 107 EGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGA--H 164 Query: 187 IPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + L A + ++ + SS L + I+G EG+G+ P Q Sbjct: 165 FALRLVEGLAPADIDRLE---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQ 221 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A + PG ++LNV AAA+ L+ + Sbjct: 222 QRARRHIRIAQPGGEESLNVGAAAAICLHAS 252 >gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans OS217] gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] Length = 233 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++RSA C GI P + V +ASG+ + + Sbjct: 16 RQIDLTVCLDKVHKTNNIAAVIRSA---DCVGIHQIHAVWPDIDMRVSGNTASGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 I+ +A Q ++ Q + + ++I K A+++G E G P+ Sbjct: 73 TIKHYRFEEAEQAFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A+ + M G++++LNVS AAA+ +Y Q Sbjct: 133 ASQHILIPMIGMVQSLNVSVAAALVMYEAQ 162 >gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 254 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 68/145 (46%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L+ V + DP N G ++R+A A D ++ T + S + +S++G+L H+P Sbjct: 100 RAPRLVAVCAQIRDPGNAGTVIRAADAAGADAVVLTTGSVEATSPKVVRSSAGSLFHLPV 159 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L +A+ + S + + +E A + G E +GL A Sbjct: 160 VTGVTLQEAVAALRSAHLAVLAADASGTTDVETAPLAAPSAWVFGTEAQGLTADELALAD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + G ++LNV+ AA V LY Sbjct: 220 AVVRVPLRGHAESLNVAMAATVCLY 244 >gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 258 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ K ++ +Q S + ++L G H SAAL R + + W Sbjct: 12 RDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLCSAALARGQRPAIAVFSESF------W- 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVL 138 P + +V +A+ Q ++ +P L P A+ +VL Sbjct: 65 -----PLAPEEYAQAATKNVVIADALWQDISGLESPARMGFVLPLPAQQALDAQSPTVVL 119 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + D N+G+ILRSA AF I K + S + ++ GA H + L Sbjct: 120 DRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGMGA--HFALRLVEGLD-- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +Q + + SS L + I+G EG+G+ P Q A+ + PG Sbjct: 176 VQDIDRLRVPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVSPDLQRRASRHIRIVQPG 235 Query: 259 IIKALNVSNAAAVALYIT 276 ++LNV AAA+ L+ + Sbjct: 236 GEESLNVGAAAAICLHAS 253 >gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 175 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSA 180 T+D R + L+++LD+V HN+G++ R+A F G++ Y+P + K+A Sbjct: 8 TVDQFRAADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCG-YTPVPPHRDIQKTA 66 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDK-IALILGAEG 237 GA E + + + T+A+ + G+ + + + + L+Q I +DK +ALI G E Sbjct: 67 LGATETVEWQYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPASDKPLALIFGNEV 126 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ + + + G+ +LN+S + + ++ + FAK Sbjct: 127 SGVDAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVW---DIFAK 168 >gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] Length = 236 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L+ +++GA + Sbjct: 25 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 81 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 82 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 141 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 142 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 172 >gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] Length = 273 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R ++VLD V DP N G I+R+A A D ++ SA +++ G++ H+ Sbjct: 112 AMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMGSVFHV 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 P +R + T + + + + D + +P + ++AL G EG G+ + + Sbjct: 172 PVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNEGNGVSDEVRR 231 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G ++LNV+ AAA+ LY Sbjct: 232 MAEAKLFIPMFGKAESLNVATAAALVLY 259 >gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] Length = 258 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKIVG 106 L G H A L +KIF L T+ ALA D + + H F + V + + + Sbjct: 35 LEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDLQNVMELHQGHVFVISEVLYKDLSTL-- 91 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L+++ DP N+G +LRSA A + I+ T+ Sbjct: 92 -GTTLPCLAIIDLPKTASTIDFSVDT---LILENIQDPGNVGTLLRSAAAANIKQIVCTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + L + L K F T SS L + Sbjct: 148 GSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQIPVFVT---SSHRSTSLYSKDLT 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G E A ++ + PG ++LNV+ A ++ + Sbjct: 205 QPCVWILGNEGQGASEYALEHAQAVT-IPQPGGQESLNVAIAGSICFF 251 >gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 225 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%) Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169 P +DAV R L +V++ DP N+ A+LR+ AF G+ T K Y Sbjct: 11 PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GVQTLHAIEGPMKPYD 67 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 ++ K + A + + R S+ T+ L + + GF + +P+ K Sbjct: 68 RNK-----KISQNADKWLDVRRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGK 122 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL+ G E +G+ + A + + M G +++LNVS AAA++L Sbjct: 123 VALVFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167 >gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 268 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 64/142 (45%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P D + ++ + VL+ V D N+G+I R+A ++ + + + G Sbjct: 110 PAADLLAGARSVAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSMGT 169 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + H+P+ + L + + + GFQ I L+ + L + ++AL++G+EG GL Sbjct: 170 VLHVPFAPLPWLDEGVDLLRRNGFQLIALTPAGECRLADTRVSGRVALLVGSEGPGLTDA 229 Query: 244 TQETATSMAHLHMPGIIKALNV 265 A + M I +LNV Sbjct: 230 AMAAADLRVRIPMHRGIDSLNV 251 >gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 252 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP NIG I+R++ AF DG++ + + S + +S ++ NL Sbjct: 116 LYLDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRSTMASIFRTKVYSDINL 175 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D GF+ I K E+ +D I +++G+E +G+ + E + Sbjct: 176 MDIRN-----GFKIICADLKGKNIREKTDWDDTI-VVIGSEAQGVSKEILEICDEAVLIP 229 Query: 256 MPGIIKALNVSNAAAVALY 274 M I +LN + AA++ +Y Sbjct: 230 MDKNIDSLNAAVAASLFMY 248 >gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 258 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 116/246 (47%), Gaps = 11/246 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ +++ + + L G H +S A + +RKI + T++AL+ D++ L Sbjct: 15 KHLRGLIEQNTYRKKQGQTVLEGTH-LSLAWLHENRKIDSIFTTEHALSHPDFEKILAKY 73 Query: 91 FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + V +++ K + LA+ T P + LD ++ ++L++V DP N+G Sbjct: 74 TGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKADT---LILENVQDPGNVGT 130 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQ 208 +LRSA A + I+ TK + S + ++ GA H N+ AL++ + + Sbjct: 131 LLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGA--HFTLQTFENI--ALEQILEQFQIP 186 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 SS + L + ILG EG+G+ + A +++ + PG ++LNV+ A Sbjct: 187 VYVTSSHRAESLYSKDLRKPCVWILGNEGQGVSDYAMQHAEAVS-IPQPGGQESLNVAIA 245 Query: 269 AAVALY 274 ++ + Sbjct: 246 GSICFF 251 >gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 45/257 (17%) Query: 39 KSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPH 89 K+R + LFL G V+ LN+P R L L W DA H Sbjct: 18 KTRRGRERLGLFLVEGERLVAELLNSPLR-----------LEALLWNVASDEPPDALWRH 66 Query: 90 PFPVK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P + PQ + E +A+ P P R ++VLD + DP N Sbjct: 67 PKADGRRYELSPQAFAAVADTETPQGLMAVAAIPRAEP-----RYGPRVLVLDAIQDPGN 121 Query: 147 IGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 G ++RSA AF I+ T Y+P + +++ G L + I DA + Sbjct: 122 AGTLVRSAEAFGFGEILFGTGTADPYAPK----VVRASMGGLFRVHAI----AGDAEAYL 173 Query: 203 HSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +W + + ++D+ + ++ ++A+++G E +G+ ++ A + M Sbjct: 174 RAWRDRHPDGVIVATAADASERCDEAPMAGEVAVVIGNEARGVSDAVRQLAQRCVAIPMA 233 Query: 258 GIIKALNVSNAAAVALY 274 G ++LN + A + LY Sbjct: 234 GKAESLNAAMAGTILLY 250 >gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 343 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 16/203 (7%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVN 142 ++ LP PV PP + QG LA+ P+ S + L +VLD V+ Sbjct: 132 ESRLPLTLPV--TPP--VFAACSDTITPQGILAITEIPIFSLERRDAPQNPLYLVLDGVS 187 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRS+VA G++ + +SA G IP N + +K+ Sbjct: 188 DPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQIPVETFENWDECREKL 247 Query: 203 HSWG---FQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGL-RPKTQETATSMAHLH- 255 G F + D E+ + ALI+G+EG GL +P + A + L Sbjct: 248 VHLGCNNFWAATMLEDGVGRSHYEVNWLSGPNALIIGSEGNGLTKPIRDDLAVTSPRLKS 307 Query: 256 ----MPGIIKALNVSNAAAVALY 274 M I++LN + +V L+ Sbjct: 308 VYVPMKAGIESLNAAVCGSVILF 330 >gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 264 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ LD + DP N+G I+RS A DGI+ + S + +++ G + +IP + + Sbjct: 113 FLLYLDRIADPGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFNIPLL-LD 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D L+++ + S +++ + L +G+E +G+RP +E Sbjct: 172 FSVDELKRLKQNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCK 231 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + + + +LN + A A+ + Sbjct: 232 IPIKPGVDSLNAAVACAIII 251 >gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] Length = 258 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D NIG +LR+A A +IT+ + S ++ GA I + Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAV 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + LQK+ + + T SS + K + IA +LG EG+G+R + A +A L Sbjct: 174 NEILQKLKTPLYAT---SSHTNKVIYDHDLTSPIAWVLGHEGQGVRDEFLNNAIPIA-LP 229 Query: 256 MPGIIKALNVSNAAAVALY--ITQNHF 280 PG ++LNV A +V Y + Q H+ Sbjct: 230 QPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 294 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L+ VL + DP N G +LR+A A +I + ++++G+L H+ Sbjct: 124 RGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAGSLFHVDV 183 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQ 245 +R ++ A++ + + G + + + L+ ++A + G+E GL + Sbjct: 184 VRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAAPTAWLFGSEAHGL--PDE 241 Query: 246 ETATSMAHLHMP--GIIKALNVSNAAAVALY 274 TA + A + +P G ++LN++ AAAV LY Sbjct: 242 LTAAADARVRVPLHGRAESLNLAAAAAVCLY 272 >gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 180 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188 L+++LD+V +NIG++ R +CD + K Y +A + K+A GA + + Sbjct: 25 LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245 + + N A++K+ I + + + + K A+I G E KG+ + Sbjct: 80 WEYVENTLSAVEKLKEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ + + G +LN+S +A +A++ Sbjct: 140 STSDEVIEIPQYGTKHSLNISVSAGIAIW 168 >gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 264 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ L +VL+ + DP N+G ++RSA AF ++ + + ++++G+ IP Sbjct: 113 RSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFRIPV 172 Query: 190 IRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I + + L + + G + I ++ + P +++ A+++G EG GL + + Sbjct: 173 IAVE--IERLFALQNAGMRFIAAVAREGGTPEAIDLRGG-CAVMIGNEGAGLSVELLALS 229 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 A + PG +++LN + A ++ LY Sbjct: 230 DERATIPCPGAVESLNAAVAGSLLLY 255 >gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185 R L ++++ VN PHN+ AILR+ CD G+ S + + +A G+ + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 + N A+ + + GF+ G + +SK + + +LGAE GL + Sbjct: 72 WVKLNNHENTIKAISDLKNKGFKLYGTTLNSKSVDYRNFDYSQNTCFVLGAEKWGLSNEL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AA++ L+ Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161 >gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii] Length = 169 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+V + + D N+GAI+R A DG++ R + K++ G + +P+ R+S+ Sbjct: 18 LVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGTVFALPWARLSD 77 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETA 248 L + GF ++ SD L++ + K+AL++G EG GL A Sbjct: 78 WCQGLGHLKEHGFTIAAMALSDDSVSLDEFAAQLRSRPRKVALLMGTEGAGLSSHWVNQA 137 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M + +LNV+ AAAVA Y Sbjct: 138 DVVVRIPMHHGVDSLNVAAAAAVACY 163 >gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104] gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104] Length = 263 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V +++P N G ++R + A G++ + ++++G++ +P + Sbjct: 108 RLIAVAVQISEPGNAGTLIRLSDAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVVAA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 +L +A+ + G Q + + D + L++ E+ A + G E GL + A Sbjct: 168 PDLREAVAAVREAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSEVAAAADH 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AAA+ LY Sbjct: 228 RVRIPMAGGAESLNVASAAAICLY 251 >gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM 271] gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM 271] Length = 265 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V DP N+G I+R+A F +I+ + + + +S++G+L + Sbjct: 117 LVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSAD 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L L ++ + GF + S ++ ++ L++G E G+ Q+ + SM Sbjct: 177 DLGVELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVM 236 Query: 254 L-HMPGI--IKALNVSNAAAV 271 + H P +++LN + +AA+ Sbjct: 237 IPHGPASPHVESLNAAVSAAI 257 >gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185 R L ++++ VN PHN+ AILR+ CD G+ S + + +A G+ + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 + N A+ + + GF+ G + +S+ + + +LGAE GL + Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G++++LNVS AA++ L+ Sbjct: 132 KSMVDQSIFIPMRGMVQSLNVSVAASILLF 161 >gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] Length = 186 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD+V HN+G+I R+A AF + ++ +L K+A GA E +P+ + Sbjct: 27 LTILLDNVRSMHNVGSIFRTADAFRIEELLLVGITGCPPHPLLHKTAIGAEEAVPWRHLD 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250 + +AL++ G + L + Q +D+ A LI+G E G+ + + A Sbjct: 87 SAIEALEQYRQEGRTILALEQTHQSITLGSQPALDDRGAVLIVGNEVHGVSDEVIQYADY 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A +A+Y Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIY 170 >gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 266 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LL V + +P N G ++R A A D I + +S++G+L HIP +R Sbjct: 112 TRLLAVPVAIGEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVR 171 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249 N+ L + S G Q + ++D + L++ ++ A + G E GL A Sbjct: 172 ERNVDAVLDALTSAGIQILATAADGEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRAD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 232 HRVRIPIRGRAESLNLATAASICLY 256 >gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] Length = 262 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 19/257 (7%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H SA L+ + + T+ AL + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEM-CVVTEGALRHDEAQ 65 Query: 85 ANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137 A V + Q I D + G+ VH G+ L L +P + V Q +V Sbjct: 66 A------IVSRIDSQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPETV--GQTCIV 117 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V D N+G+ILRSA A + + + S+ + +S GA H ++I D Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVD 174 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A + + S + + + ++A + G EG G+ ++ + + P Sbjct: 175 AQTLIERLAVPVVITDSHGAEAIYDCDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQP 234 Query: 258 GIIKALNVSNAAAVALY 274 G +++LNV+ AAAV ++ Sbjct: 235 GGMESLNVAAAAAVCMF 251 >gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6] gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6] Length = 277 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---LEHIPYIRI 192 +VLD + DP N+G +LRSA A ++ K + S + ++ GA L + + + Sbjct: 134 LVLDRLQDPGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVEV 193 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L D L + SS +++ L + A +LG EG+G+ Sbjct: 194 NEL-DTLD------LPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEAVMRRCALTV 246 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + PG ++LNV+ AAA+ LY Sbjct: 247 RIPQPGGEESLNVAAAAAICLY 268 >gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] Length = 266 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 13/156 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ +L+ V DP N G I+R+A A D +I T R Y+P + ++ +G+L H+P Sbjct: 115 LIAILEEVRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPK----VVRATTGSLFHLPV 170 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246 + L L+++ + G Q + L + A + G E +GL+ + Sbjct: 171 AIMPELDAVLERVRAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLA 230 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + + G +++N++ AA+V LY ++ FA+ Sbjct: 231 LADRAVVVPIYGQAESMNLATAASVCLY--ESAFAQ 264 >gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] Length = 263 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 4/176 (2%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + +K+ G+E LAL P +P L V + +++VL + P NIGAILR+A A Sbjct: 81 EAFEKVSGRENPDGLLALVPTP--APRLPEVGEAGVVVVLHGLEKPGNIGAILRTADAAG 138 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ R + S + +++ G++ +P + AL + + + D+ + Sbjct: 139 AAGVLVLGRGADVYSPNVIRASQGSVFTLP-VANLEEAAALAWLAEHRLTRVACTPDAPQ 197 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL+LGAE +GL P A + M G +LNV+ AAA+ LY Sbjct: 198 VYWDAPLTGRVALVLGAEHEGL-PPAWRAAEMPVRVPMHGTADSLNVATAAALVLY 252 >gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 266 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LL V + +P N G ++R A A D I + +S++G+L HIP +R Sbjct: 112 TRLLAVPVAIGEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVR 171 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249 N+ L + S G Q + ++D + L++ ++ A + G E GL A Sbjct: 172 ERNVDAVLDALTSAGIQILATAADGEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRAD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 232 HRVRIPIRGRAESLNLATAASICLY 256 >gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa] gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa] Length = 216 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR S +V+ ++ HN+G + RSA AF +I R + + + G+ H+P Sbjct: 2 VRES--YVVVHNIAKRHNVGTLARSATAFGVKELILVGRRDFN-----SFGSHGSTSHLP 54 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + +L+DA + G+ +DS P+ + A +LG EG GL K E Sbjct: 55 FRHFHSLSDARNFLKEKDCDICGVEITDSAFPVNEHPFKRSTAFLLGNEGTGLSTKECEI 114 Query: 248 ATSMAHLHMPGIIKA-LNVSNAAAVALY 274 ++ G A LNV+ AA++ L+ Sbjct: 115 CDFFVYIPQYGCGTASLNVTVAASIVLH 142 >gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] Length = 257 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKS 179 TL V+ Q L++VL + P N+GAILRSA D ++ + YSP + ++ Sbjct: 99 TLKEVQLPQDPLVLVLLGLEKPGNLGAILRSADGAGVDLVLVAEGVDLYSPQ----VIRN 154 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++G + +P ++ +A + + G + + +K +E +A +LG E +G Sbjct: 155 STGVVFSLPVYPVAE-EEAARFLEEKGLFLVAATPRGEKVYWEENYQRGVAFLLGTEDEG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L A + M G+ +LNVS +AA+ LY Sbjct: 214 LSEAWLARAGVRVRIPMRGVADSLNVSVSAALLLY 248 >gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 10/147 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ L++ LD + DP N+G I+R A F + I+ + + S ++ GAL H+ + Sbjct: 100 STSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVK-V 158 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L D L+ + G D + +E+ + I +++G EG G+RP+ ++ Sbjct: 159 HYTELEDYLKAQAARQIPLFGTFLDGENMYTKELSANGI-IVMGNEGNGIRPQIEKLINQ 217 Query: 251 MAHLHMPGI------IKALNVSNAAAV 271 L++P ++LNV+ A AV Sbjct: 218 --KLYIPSFPPERETSESLNVAIATAV 242 >gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 230 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A GI P+ + SA+G+ Sbjct: 14 ATRQPDLTVCLEEVHKPHNVSAIIRTADAV---GIHQIHAIWPTPAMYTRLSSAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + S++TDA+ + S G Q + K +EI + +++G E G+ + Sbjct: 71 VQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 248 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +LD V + +L+ V ++P N G ++R A A D +I + ++++G Sbjct: 88 SLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAG 147 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ + + + + +H G + D + L+ + A + GAE GL P Sbjct: 148 SIFGVSVVEAPDTAGLVAALHGAGLTVLATMLDGEVSLDDAELSGPTAWLFGAEAHGLAP 207 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G ++LNV+ AAA+ LY Sbjct: 208 DVAALADARVTIPMAGSAESLNVAAAAAICLY 239 >gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] Length = 233 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A GI PS E +A+G+ Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQVHAIWPSTEMYTRLSAAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + ++TDA+ + S G Q + K +EI + +++G E G+ + Sbjct: 71 VQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] Length = 168 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 129 VRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 ++N Q + +V D + P NIG R + +F I + +E+ ++ K+A + Sbjct: 9 IKNEQTQFPITIVCDAIRTPENIGMCFRISESFGVSKIYFHEASPSTENKIVKKTARNTI 68 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLR 241 + SN + + + + G + IG+ K Q+ KN+KI L+LG+E G+ Sbjct: 69 HQTEHETYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERNGV- 127 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A + M G ++NV ++ A+ LY Sbjct: 128 -ENINSADETIAIPMYGKNSSMNVIHSLAITLY 159 >gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] Length = 229 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R S L ++L+HV HN+ AILRS CD + + ++ S L + AL + Sbjct: 18 RISDLTVILEHVEKSHNLSAILRS-----CDAVGIIEAHAVSLRERLRIFQNTALGSQKW 72 Query: 190 IRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRP 242 +R+ N + A+ ++ GF+ G + + +N + +LGAE GL Sbjct: 73 VRLRNYNSIVPAITQLKQRGFKIYGTNLGIGSI---DYRNCDFLGPSSFLLGAEKWGLSQ 129 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E + M G++++LNVS A A+ L+ Sbjct: 130 EAAELVDQSITIPMSGMVQSLNVSVATAILLF 161 >gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 178 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 LE + L +++ + S L++VLD + HNIG++ R++ AF + II + Sbjct: 4 LENSELERKSIEDFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKI 229 + + K+A GA E + + N+ + ++ + T+ + Q+ KN K Sbjct: 64 NKEIHKTALGATETVAWEHHENVLEVIENLKKENVLTLAIEQVESAVFLQDFQVEKNQKY 123 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+ G E G+ + + G +LN++ +A + ++ Sbjct: 124 ALVFGNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVW 168 >gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205] Length = 238 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186 R L +V++ V+ PHN+ AILR +CD + + + P +A G+ + Sbjct: 25 RMGDLTVVMEQVDKPHNLSAILR-----TCDAVGALEAHVVSLPGRPRTFNNTAKGSQKW 79 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P ++ LQ + GF+ G LS D+ + + ++GAE G+ + Sbjct: 80 VPLHPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCDFTGPS-CFLMGAEKWGMSEEA 138 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AAA L+ Sbjct: 139 LALVDQPLFIPMTGMVQSLNVSVAAATLLF 168 >gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 251 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 14/192 (7%) Query: 91 FPVKTVPPQTIDKIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV V + DK+ G AV Q L + A +L + +LL++ +P Sbjct: 58 IPVHRVTARAADKLSETSTAPGVFAVCQLLTVGLAAVLGD------DPRLLVIAVEPREP 111 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R A A D +I + ++++G++ HIP +R ++ L + Sbjct: 112 GNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDVAGGLAAVAD 171 Query: 205 WGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G T+ + D + L+ ++ A + G E GL + + A + + G ++ Sbjct: 172 AGIVTLATTMDGELSLDDADDVLARPHAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAES 231 Query: 263 LNVSNAAAVALY 274 LN++ A+AV LY Sbjct: 232 LNLAAASAVCLY 243 >gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM 22836] Length = 175 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V +NIG++ R++ AF + + + + + K+A GA + + S Sbjct: 25 LIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAENSVAWAYYS 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 + A++++ G+ + + E++ D K A+ILG E KG++ Sbjct: 85 DTDQAVEELKKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGNEVKGVQQDVVSRCDC 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS AA + ++ Sbjct: 145 CVEIPQYGTKHSLNVSVAAGMVIW 168 >gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] Length = 219 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 9/152 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+D+VN HN+ A++RS CD + ++ S + + A + Sbjct: 17 RQTSLTVVMDNVNKSHNLAALVRS-----CDAAGIHEIHAVSRRKHIFTRHNAAAGSSKW 71 Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245 + I+ ++ +++ G Q + +S K +EI ALILGAE G+ Sbjct: 72 VNINLYHDIESVYRRLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGAEWDGISEDAI 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A AV +Y Q Sbjct: 132 SGADRCIGVPMFGMVESLNVSVAGAVIIYEAQ 163 >gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] Length = 183 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF +GI + +A + K+A G + + + S Sbjct: 28 LVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGEDSVAWRYFS 87 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQET 247 DA+ ++ S + + Q++ DK A++ G E KG++ + Sbjct: 88 RAEDAVTELQSHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGYAVVFGNEVKGVKQEVVNM 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LNVS A + ++ Sbjct: 148 SDGCLEIPQFGTKHSLNVSTTAGIVMW 174 >gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 227 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ AI+R+A A G+ P + L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAIIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161 >gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 178 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HNIGA+ R++ AF D I + + K+A GA + + Sbjct: 28 LVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYTVDWKYFQ 87 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 + DA+ ++ + G+ + L ++ + K A++LG E KG++ + Sbjct: 88 HTEDAVNELRTMGYTLFAIEQCEGSILLDKLVLEPDKKYAVVLGNEVKGVKQEVVNLCDG 147 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 148 CIEIPQFGTKHSLNVSVTAGIVIW 171 >gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica W22703] Length = 219 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A GI P+ + SA+G+ Sbjct: 3 ATRQPDLTVCLEEVHKPHNVSAIIRTADAV---GIHQIHAIWPTPAMYTRLSSAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + S++TDA+ + S G Q + K +EI + +++G E G+ + Sbjct: 60 VQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 120 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 263 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 66/141 (46%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VL+ + DP N+G I+R+A GI + + + + +S G++ +P+IR Sbjct: 115 LILVLEDLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKVIRSTMGSIYRVPFIREE 174 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L L + + QE A ++G EG GL + A + Sbjct: 175 DLCARLDWLREREVYAYAAHLKGENSYNQEDYRKGTAFLIGNEGNGLSDQLAGKAAHLIR 234 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + AAA+ +Y Sbjct: 235 IPMEGQVESLNAAVAAALLMY 255 >gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 184 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD+V HN+G+I R+A AF + ++ ++ K+A GA E +P+ + Sbjct: 27 LTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPWRHLD 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250 + + L++ + G + L + PL Q +D+ A LI+G E G+ + + A Sbjct: 87 SAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADY 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A +A+Y Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIY 170 >gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] Length = 186 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++VLD V HN+G++ RS+ AF + I + +A + K+A GA + + + Sbjct: 21 RKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTALGAEDSVDW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-----------SDSKKPLEQEIKNDK-IALILGAEG 237 +A++++ + G+ + S P+ E ++K A++LG E Sbjct: 81 QYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQTSEKRYAVVLGNEV 140 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG++ + + + + G +LNVS A + ++ Sbjct: 141 KGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIW 177 >gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 275 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V D P NIG ++RSA AF G+I T + ++ +G+L +P +R Sbjct: 117 AMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVR 176 Query: 192 I---SNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ D + + + G Q IG + + L++G E GL Q Sbjct: 177 VPSHRDVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQ 236 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + M + + G +LN + A VALY Sbjct: 237 EASDRMVRIPIVGAASSLNAAAAGTVALY 265 >gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20] gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20] Length = 257 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 24/235 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L G H V A+ + K ++AT+ +A L+ ++PH P V + I G Sbjct: 31 LLDGWHLVEEAIKAKA-KFHAVMATEAQMAEHLN---DVPHGVPAFEVSEEVAKHIAGTN 86 Query: 109 AVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---- 163 QG+ E + L T D + + LD++ DP N+G ++R+A A G++ Sbjct: 87 -TPQGIFAEIS-LPDKTFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTG 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKMHSWGFQTIGLSSDSKKP 219 T YSP + ++ G+ H+ + + TDAL + +G Q +++ K Sbjct: 145 TADAYSPK----VVRAMQGSQFHLEILNGDLHEWTDALTANGLPVYGSQL----NEAAKS 196 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ALI+G EG+G+ + T+ ++ + G ++LNV+ A + ++ Sbjct: 197 YRTIQPSTQFALIVGNEGQGMAESLADKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis EO147] gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis C6786] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + L G+H SA L+ + + T ALA + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPEL-CVVTDGALAHAEAR 65 Query: 85 ANLPHPFPVK--TVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDAVRNSQLLM 136 + P + T+P D + G+ + V G+ L AP L R + Sbjct: 66 EIVGRVEPARLVTLP----DALFGQLSNVVNGVGLLLLVERPAPALPE-----RVVDTSV 116 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V D N+G+ILRSA A + + + S+ + +SA GA H + I Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDV 173 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D + S + ++ + + + G EG G+ + ++ AT + Sbjct: 174 DVDTLIERLAVPVALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 234 PGGMESLNVAAAAAICLF 251 >gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3] Length = 272 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 24/187 (12%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +KIV ++++ G+ L P L D V+ + L++++ V P N+GA+LR+A Sbjct: 86 CFNKIVVRQSL-DGIVLVMKPKLKALEDFPVKQNPFLLLIESVEKPGNLGALLRTADGSG 144 Query: 159 CDGIITTKR----YSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLS 213 DG++ + Y+P+ + +S+ G +P S A K LS Sbjct: 145 VDGVLVLESQIDLYNPN----VIRSSLGCCFSLPIAMCSREEAYAFCKERKIAIHAAVLS 200 Query: 214 SDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + S + D + A++LG+E KGL P A + + M G +LNVS Sbjct: 201 NAS-------VYYDTVNYPSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEADSLNVSA 253 Query: 268 AAAVALY 274 A AV LY Sbjct: 254 AGAVLLY 260 >gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4] gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4] Length = 266 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+++D + DP N+G I+R+A A + G++ K ++ +GA+ +P ++ Sbjct: 117 LLVIVDGLQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAIFRLPVVKGP 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + L + + G + + + P AL++G+EG G P T + Sbjct: 177 SAEEVLPLLRTAGIELVVADPRGEVPFYAHSFLGPTALVIGSEGGGPGP-VWSTLARRVY 235 Query: 254 LHMPG 258 + MPG Sbjct: 236 IPMPG 240 >gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] Length = 251 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +++D V DP N G ++R+A A D +I K + S + ++A G+ H+ ++ +L Sbjct: 108 LLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQGSHLHVGLLK-GDL 166 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++K++ G + ++ + D A+++G EG G+ P A + +L Sbjct: 167 NMWIEKLNEAAVPVYGTALENGVTFREVNPGDAFAILVGNEGSGVHPDL--LAQTEQNLS 224 Query: 256 MP--GIIKALNVSNAAAVALY 274 +P G ++LNV+ AA + +Y Sbjct: 225 IPIFGKSESLNVAVAAGILMY 245 >gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] Length = 265 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 ++++ V P N+GAILR A DG+I Y+P+ + +S+ G + +P Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPN----VIRSSLGTVFTLP- 171 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + L + LQ + +Q S + E N +AL+ G+E GL + Sbjct: 172 IWSATLDEVLQTIAEEKWQVFATSPRASTMYFCENYNQPLALVFGSEKDGLTSHWLKGNF 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + L M G + +LN+S A + Y Sbjct: 232 AKISLPMLGQVDSLNLSTAVSAVAY 256 >gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 273 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 27/252 (10%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP----FP 92 K R TSQ F G V AL R KIF A + R + + P Sbjct: 20 KGRKTSQ--QFFAEGRRFVGEALMRSKRIEKIFYCPAKGSTWEREKLEELILEAGKLRIP 77 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + V + +I E LAL S + +L++LD + DP N+G ILR Sbjct: 78 AEEVSEDVMKRISATEEPQGILALINQEEYSWDDIQIEPDTILLILDGIRDPGNLGTILR 137 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----- 207 +++A ++ T+ + + +S+ GA+ + ++ +++ W F Sbjct: 138 ASLAAGVKNVVLTRGTVDYYNPKVLRSSMGAVFSMCILQ------EIERPDIWAFCRQNH 191 Query: 208 -----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + S ++ ++Q + +AL++G+E G+ P+ E + + M +++ Sbjct: 192 LNLVVSALEGQSVYRQKMDQSL---PLALVIGSEANGVAPEFSEISPKKIMIPMQNNVES 248 Query: 263 LNVSNAAAVALY 274 LN + AA + L+ Sbjct: 249 LNAALAAGILLF 260 >gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 275 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V D P NIG ++RSA AF G+I T + ++ +G+L +P +R Sbjct: 117 AMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVR 176 Query: 192 I---SNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ D + + + G Q IG + + L++G E GL Q Sbjct: 177 VPSHRDVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQ 236 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + M + + G +LN + A VALY Sbjct: 237 EASDRMVRIPIVGAASSLNAAAAGTVALY 265 >gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 389 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD + D N+G+++R A AF ++ +K + + G + IP +R+ N Sbjct: 233 LLALDGICDTANLGSVVRCASAFGVHAVLLSKDCCDPWYRRAVRVSMGHIFRIPCVRVDN 292 Query: 195 LTDALQKMHSWGFQTIGLSS--DSKKPLEQE-IKNDKI----ALILGAEGKGLRPKTQET 247 L AL + F ++ D + L E I I I+G+EGKG+ + Sbjct: 293 LVQALTALSQEPFAVTSYAAVIDPRADLLLENIAQGAIPKSWCCIVGSEGKGISCDVIQA 352 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 AT+ + M + +L+V A + L+ Sbjct: 353 ATTTLRIGMYDHVDSLSVPVATGILLH 379 >gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] Length = 256 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 1/139 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G I+R+A A D I K + + +SA G+ ++ I + + Sbjct: 110 VLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSAMGSGFYMD-ILLES 168 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + G Q + S D+ ++ D AL+LG E G+ E + + + Sbjct: 169 QEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEANGINDFWIENSDLLVKI 228 Query: 255 HMPGIIKALNVSNAAAVAL 273 M G ++ NV+ +AA+ + Sbjct: 229 PMYGKAESFNVAISAALLM 247 >gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 176 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HNIG++ R+A F+ + + + + K+A GA + + + Sbjct: 25 LIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALGATQSVAWAHFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 DA+ + + G+ IG+ + + K + K ALI G E G+ + Sbjct: 85 TTVDAIASLKADGYHIIGIEQAAGSTMLNTYKPTYSKKYALIFGNEVNGVSDEVMAQIDE 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G + N+ +A + L+ + FAK Sbjct: 145 CIEIPQFGTKHSFNIVISAGIVLW---DFFAK 173 >gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] Length = 180 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + +N+G++ R+A AF +G+ + + K+A GA + + + S++ Sbjct: 27 IILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSVKWEYFSSV 86 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMA 252 DA++++ + G+ + ++ LE K + ALI G E KG+R + + Sbjct: 87 VDAIEELKAKGYSICAIEQAEGSLSLENFSPSKGTRYALIFGNEVKGVRQEAIDLCDLCL 146 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 147 EIPQFGTKHSLNVSVTAGIVIW 168 >gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] Length = 259 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGA 183 D +++ + L DP NIG ++R+A A DG++ T YSP + +S G+ Sbjct: 108 DTIKSGGCYLALCSTQDPGNIGTMIRTADALGIDGVLLHNTCDIYSPK----VVRSTMGS 163 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L + + +L +++ G T + P+ + + L +G EG GL Sbjct: 164 LFRMRFALCPDLLGLTASLNACGVDTCAAVVEDALPVTRASFSGPRVLYIGNEGNGLPDS 223 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LN ++AAA+ ++ Sbjct: 224 IAFACARRITIPMRGNAESLNAASAAAILMW 254 >gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 255 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + D K K L+ K ++ALI+G E G+ ++ Sbjct: 173 ADVITDFQDVAIPVYASMLDKKAKQLQDFAKVPQLALIIGNEAHGVSSTIASLCDEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 233 PIKGKAESLNAAVAAGIMIY----HFA 255 >gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 235 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--SASGALEHI 187 R + L + L++V+ PHN+ A++R+ CD + + ++ E + +A G+ + + Sbjct: 16 RQTDLTVCLENVHKPHNVSAVVRT-----CDAVGIHRVHTVWEKKYQFRRGTAMGSQQWV 70 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 N+ DA+ ++ G Q + SD+ A++ G E G + + Sbjct: 71 RQTNHDNINDAMAELKGQGMQVLVTHLSDTAVDFRDIDYTKPTAILFGQEKYGASDEAKA 130 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS AAA+ LY Q Sbjct: 131 IADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQ 163 >gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319] gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319] Length = 182 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 24/163 (14%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RSA AF + I + +A + K+A G + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGGEDSVDWKYFE 84 Query: 194 NLTDALQKMHSWG--------------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 DA++ +H G T+ L+++S N A+I+G E KG Sbjct: 85 RTEDAVEDLHKKGVFVYSVEQVEHSTKLHTLDLNAESTT------NNSHYAIIMGNEVKG 138 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ + + + + G +LNVS A + ++ FAK Sbjct: 139 VKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIW----EFAK 177 >gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299] gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299] Length = 338 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 23/189 (12%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 Q++D++ +AV + L P++ L+ L+ LD + DP N+G ++R+A+A Sbjct: 162 QSVDRV---DAVAE---LSMPPVVGVAALEGAGRITRLLALDGIQDPGNLGTLVRTALAL 215 Query: 158 SCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D + + P L ++A G + +P R++ + L+++ + GL Sbjct: 216 GWDAVALLPGTCDPYNDKAL-RAARGGVFRMPMARLT--WEELEEVT----RRDGLQRFC 268 Query: 217 KKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +P + + L+LG+EG+GL T +A + MPG +++LNV+ A Sbjct: 269 AEPTADATAADTAATGSKGLCLVLGSEGQGLSDVALRTCEPVA-IPMPGEMESLNVAVAG 327 Query: 270 AVALYITQN 278 + LY+ + Sbjct: 328 GILLYLMRR 336 >gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 258 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 15/228 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106 L G H L +KIF L T+ AL D + + H F + V + + + Sbjct: 35 LEGTHLCLTWLQQ-QKKIFSLFTTEQALEHTDLKKIIELHQGHIFVISEVLYRDLSTLGT 93 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA+ P + T+D ++ ++L+++ DP N+G +LRSA A + II T+ Sbjct: 94 SLPC---LAIIDLPKTASTIDYKVDT---LILENIQDPGNVGTLLRSAAAANIKQIICTQ 147 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S + ++ GA + LTD L K F T SS L + + Sbjct: 148 GSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFPIPVFVT---SSHRSTSLYSKDLS 204 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ILG EG+G + A S+ + PG ++LNV+ A ++ + Sbjct: 205 KPCVWILGNEGQGASDYALDHAESVT-IPQPGGQESLNVAIAGSICFF 251 >gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 290 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 15/203 (7%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A L PV ++ +T+ + G + +H+GL A + LS +AV ++ + +L+ V Sbjct: 83 AELVRDIPVYSLDRETLASVAGFD-MHRGLLAAADRVAGLS-IEEAVSTARTVAILEGVG 140 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDA 198 D NIG++ R+A D I+ + + + + G + P+ + Sbjct: 141 DHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKRTTWQRE 200 Query: 199 LQKMHSWGFQTIGLSSDSKKP-LEQEIKN------DKIALILGAEGKGLRPKTQETATSM 251 L+ + + GF + L+ + L + + DK+AL++GAEG GL Sbjct: 201 LEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAEGPGLTEHAMRATDVR 260 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + M +LN++ +AA+A Y Sbjct: 261 ARIPMAPGTDSLNLATSAAIAFY 283 >gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4] Length = 282 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/266 (21%), Positives = 116/266 (43%), Gaps = 26/266 (9%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 RN R +++ QS+ ++ + GV ++ AL++ I LL + DW Sbjct: 20 RNAR-FQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALDH-DWPIESLLHRIDGPPLSDWA 77 Query: 85 ANLPHPFPVKTVPPQTIDKI-VGKEAVHQ-GLALETAPLL-------SPTLDAVR--NSQ 133 L + +++++I V E + + G +TAP L P L +R ++ Sbjct: 78 REL--------LASRSVEQIGVSAELMAELGEKTDTAPELIAVAKTRVPRLKELRLQSAP 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V D P N+G ++RSA AF D ++ + ++++G+L +P + +S Sbjct: 130 LVVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVS 189 Query: 194 NLTDAL-----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + L ++ +G ++ L++G E +G+ + Sbjct: 190 SVDEILAFRDARRASGTELHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRNAC 249 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ ++ + G +L +A AVALY Sbjct: 250 DTVVNIPIGGAASSLGAPSAGAVALY 275 >gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002] gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIR 191 QL + ++ + DP N+G I+R+A A + DG++ + +PS VL S + P + Sbjct: 109 QLGVAVERLQDPGNLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVV- 167 Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 I + LQ+ + G Q + L +K + + + + ++LG EG GL P A Sbjct: 168 IPTFAEQLQRYRAQGVQIVATLPQATKTYWDVDWRQPSL-ILLGNEGAGLSPAIASLANE 226 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A A+ LY Sbjct: 227 TVQIPMGPGVESLNVAIACALMLY 250 >gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab] Length = 270 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSAS 181 SP +A+R L +V++ + DP N+G+++R A DG+ ++ P VL SA Sbjct: 107 SPPPEALR---LGLVVETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAG 163 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEG 237 P + +S+L +Q G Q + + + PL + + +LG EG Sbjct: 164 QWFRRPPQV-LSDLPAWIQSCRRQGIQVL---AATLAPLATCYWDHDLTRPTLFLLGNEG 219 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL+ T + A + + M +++LNV+ + LY Sbjct: 220 AGLQESTIQLADAQVRIPMAAGVESLNVAMTGGLLLY 256 >gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 184 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +++L ++L+ V P N+G++ R+A AF I +P K+A G + + Sbjct: 27 HNRLGLILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEWH 86 Query: 191 RISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +T A+ M G++ + ++ D+ E ++ D + L+LGAE G+ P E A Sbjct: 87 APVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGD-VCLLLGAEEHGVSPAALEAA 145 Query: 249 TSMAHLHMPG 258 S+ ++ G Sbjct: 146 DSVVYIPQVG 155 >gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189 L ++LD V DP N+G ILR+A F G + +SP + +++ GAL + Sbjct: 101 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASMGALARVQP 156 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243 + N D L G G + + E + N + L+LG+EG G+ P+ Sbjct: 157 TPLKNTVDTLAYFRRQGIPVYGAFLEGQSLYEAPLPNFTEPAILVLGSEGHGISPEVAAE 216 Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271 T + L + G ++LNV+ A A+ Sbjct: 217 ITDRLTIPASGLSVKGHTESLNVAIATAI 245 >gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 233 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R L + LD V+ +NI A+LRSA C GI P + V +ASG+ + + Sbjct: 16 RQVDLTVCLDKVHMTNNIAAVLRSA---DCVGIHQIHAVWPDDDMRVSGNTASGSQQWVD 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ +A Q Q + + SDS + A+++G E G+ + Sbjct: 73 TVKHYTFEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS AAA+ +Y Q Sbjct: 133 ADQHIIIPMRGMVQSLNVSVAAALVMYEAQ 162 >gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri] gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +Q +++L+++ DP N+G ++R+ + F II + + +++ GA+ + I+ Sbjct: 108 NQNILLLENIQDPGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGAIFKVA-IK 166 Query: 192 ISNLTDALQ-KMHSWGFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +NL + +++ + T GL S + Q +N++ L LG EG GL QE Sbjct: 167 EANLIEIKNFQLNRYKIITTGLKRQSVFLQDCHCQFKQNERYILALGNEGHGLSTTLQEI 226 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +++LNV+ A + +Y Sbjct: 227 SDYNVQIKINSQLESLNVAQAGTILMY 253 >gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083] gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P+ +++ G VH+G +++ PL + + ++ ++ +++++ VND NI Sbjct: 76 PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPLPT-AAELLQTARRVVIMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ +L + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKSLDSVREAGF 193 >gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 216 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 12/156 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVL---AKSASGALEHIPY 189 L ++LD V+ N+ AILR+ CD + + Y+ S++ L GA + Sbjct: 28 LKVMLDDVHSSQNLSAILRT-----CDAVGVQHLYYTTSDNRDLRIHKTITQGAHRWVER 82 Query: 190 IRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 RIS LQK G+Q + + + +E+ K +++G E G+ +T E Sbjct: 83 TRISTEEQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKDGVSSETVE 142 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A ++ + M G++++LNVS AAA+ LY + A+ Sbjct: 143 LADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAE 178 >gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] Length = 306 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 4/143 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+G I+R+A A DG+ + E+ + ++++G +P + Sbjct: 152 LGLVLETLQDPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRASAGQWFRLPISANA 211 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETATSM 251 NL+ +++ + G Q + ++ K PL + +I ++LG E GL + A Sbjct: 212 NLSQVVRQSQAQGVQVV--ATLPKAPLSYWEIDWRIPTLILLGNEAAGLSSELTVLADQA 269 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + +++LNV+ AAA+ +Y Sbjct: 270 VQIPLGQDVESLNVAIAAALIVY 292 >gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] Length = 284 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 17/151 (11%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191 ++ LD + DP N+G +LR+A+A + + P V+ +S++GA+ +P R Sbjct: 116 FVLALDRIQDPGNLGTLLRTAMAADVEMVWQGSGADPLNPKVV-RSSTGAVLKLPLHRFG 174 Query: 192 ------ISNLTDALQKMHSWGFQTIG-LSSDSKKPL------EQEIKNDKIALILGAEGK 238 I+ L L + G Q + L + PL E + + + L+LG EG+ Sbjct: 175 PAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELDWRLPTV-LVLGNEGR 233 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL P+ + T L +++LNV++AA Sbjct: 234 GLHPELLDCCTHGVTLPHSPAVESLNVASAA 264 >gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] Length = 292 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTD 197 V DP N G ++R+A A CD +I + + +S +G+L H+P +R + D Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMRTNEFFD 197 Query: 198 ALQKMHS--WGFQTIGLSSDSKKPLE-QEIKNDKIAL------ILGAEGKGLRPKTQETA 248 H W G ++ +KP + DK A+ + G E +GL P+ E Sbjct: 198 WTSDHHVDVWAADVYG--TEKRKPESLPAVLADKAAVSMSQAVLFGNEARGLEPEILERC 255 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 256 GRIVSIPLYGKAESLNLGTSAAVML 280 >gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] Length = 278 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD + DP N+G + RS +A + + P VL +S++G++ H+P+ RI + Sbjct: 111 ILALDRIQDPGNLGNLFRSGLAGEYEVMWLASGADPLNQKVL-RSSAGSVLHMPFERIGH 169 Query: 195 --------LTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGL 240 L L +Q +G S +K KP + + L+LG EG G+ Sbjct: 170 SSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGV 229 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + T L ++ +LNV++AA Sbjct: 230 HASIEACCTDFVTLPHSSLVDSLNVASAAV 259 >gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106] gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106] Length = 229 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 123 SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKR--YSPSESAVL 176 S ++AV R QL ++L+ + PHN A LR+ +F + I R + + L Sbjct: 22 SQKIEAVVQQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSL 81 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235 + +I+N L+K+ S G++ + + + + +EQ +K+ L+ G Sbjct: 82 GSHRWLTISRYNEPKINNTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLMFGT 141 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL A + + M G ++ N+S + A+ LY Sbjct: 142 ELNGLSDDAVSQADYLVRIPMVGFSESFNISVSVALCLY 180 >gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 279 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL+ VL V DP N+G ++R A A D ++ + ++++G++ H+P R Sbjct: 113 QLVAVLVGVADPGNVGTVVRCADAAGADAVLLAGDTVDPHNGKAVRASTGSVFHLPLARD 172 Query: 193 SNLTDALQKMHSWGFQTIGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L + G + + D P + ++A + G E G+ + A Sbjct: 173 RDAGAVLAACRAAGLVLLAADAHGELDLHDPAADAVLGGRVAWVFGNEAHGVPDEVLAAA 232 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AAA+ LY Sbjct: 233 DHRVSVPIHGRAESLNLATAAAICLY 258 >gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] Length = 238 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A+RN +VL+ + D NI A++RSA + F +I T+ + V GA + Sbjct: 42 ALRNFDTAVVLEGIYDRGNISAVMRSAEGLGFGNFHVIETQEKFKEANRV----TQGADK 97 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKT 244 + + D ++ + + G++ D+ KPL + + K AL+LG E G+ P+ Sbjct: 98 WVEVKKWKKTADCVKALKNQGYKIYVTHLDANAKPLHEIDFSGKTALVLGNERDGVTPEM 157 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 A + M G +++ N+S A A+ LY I+Q+ + Sbjct: 158 IAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDRLKR 196 >gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767] gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii] Length = 426 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 120/328 (36%), Gaps = 82/328 (25%) Query: 25 RNHRDYKKMQSF-----NQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 R +R ++K + F N+ R P + ++YG V AAL R F L T N Sbjct: 97 RQYRKHEKEERFSRFGGNRDFRQAFKNPLSEYVYGTFPVMAALMANKRGSFNKLITHNPK 156 Query: 79 ARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLD--------- 127 L + ++ + + ++ VH G+ LET PL P + Sbjct: 157 ESSGEIFKLAKRYGLRIDRKDSKNDLNVLSDNGVHNGIVLETKPLELPIISTLGECDPEL 216 Query: 128 ---------------------AVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFS 158 VRN L + LD + DP NIGAI+RSA Sbjct: 217 GTYKVSIVNDLYNTEVQKSEPVVRNFSDESSSKYPLGIYLDGITDPQNIGAIVRSAYYLG 276 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ + V K+++G+L+ I D+L+ + S + + S K Sbjct: 277 ADFIVVPDHETARLGPVANKASAGSLD---LTSIYQTVDSLRFVESVKNNGWNVITTSAK 333 Query: 219 P--------------LEQEIKN--------------DKIALILGAEGKGLRPKTQETATS 250 P +E+ +KN I LI+G+EG G+R + + Sbjct: 334 PNHDELHDLKSKHEKVEEHLKNKFIEVDELSSMMAQSPILLIMGSEGAGVRTNLKLKSDY 393 Query: 251 MAHLHMP-----GIIKALNVSNAAAVAL 273 + L I+ +LNVS A + + Sbjct: 394 LVGLDKGRRLGVDIVDSLNVSVACGLLI 421 >gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 223 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185 R L ++++ VN PHN+ AILR+ CD G+ S + + +A G+ + Sbjct: 17 CRMQNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 + N A+ + + GF+ G + +S+ + + +LGAE GL + Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSKEI 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AA++ L+ Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161 >gi|255626589|gb|ACU13639.1| unknown [Glycine max] Length = 218 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +V+ ++ HN+G + RSA AF +I R + + G+ H+ + + Sbjct: 6 FVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFN-----CFGSHGSSSHLRFRHFHS 60 Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L DA + + F G +++DS P+ Q A +LG EG GL PK E Sbjct: 61 LQDARKFLKDKDFDICGVEITTDS-LPVNQHPFTKSTAFLLGNEGTGLSPKEIEICGFFV 119 Query: 253 HL-HMPGIIKALNVSNAAAVALY 274 ++ G +LNV+ AA++ L+ Sbjct: 120 YIPQYGGGTASLNVTVAASIVLH 142 >gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCT 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++H + SS ++ + N + + G EG G+ + T ++ + Sbjct: 175 FESVHARLH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 231 PQPGGMESLNVAAAAAICLF 250 >gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 232 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASGAL 184 A R L +V+D+VN PHN+ AI+RS CD + Y+ S + +A+GA Sbjct: 15 ASRQPDLTVVMDNVNKPHNLSAIIRS-----CDAVGIHDLYAVSSKKSIHTTQNAAAGAG 69 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243 ++ +K+ G Q + ++ + + I A++LGAE +G+ + Sbjct: 70 RWTNLHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIVLGAEWEGVSAE 129 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G++++LNVS AAA+ L+ Sbjct: 130 AIQAADMAITIPMYGMVESLNVSVAAALILF 160 >gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 10329] Length = 227 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161 >gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 274 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 15/197 (7%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137 P PV +D +VG +H+G LAL E A LDA+ L++V Sbjct: 76 RFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAA-----LLDALPERALVLV 129 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 130 GCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALD 189 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L + GF LS K + + ++AL++G EG+GL P+ A + Sbjct: 190 VLVALAERGFAIWTLSPHGKTDIRAIPASTRMALVVGTEGEGL-PEALLARFQSARIPQS 248 Query: 258 GIIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 249 EELDSLNAATATGIALF 265 >gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 267 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 8/113 (7%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187 +L++ LD V DP N+G ILR+A F ++ T RY+P ++ +G++ + Sbjct: 118 GELVLALDDVQDPGNVGTILRTASWFGVSTVVCGPGTADRYNPKA----IRAGAGSVFCL 173 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + +L L+KM G+ I S Q ++ L++G E KG+ Sbjct: 174 NHYSVGDLEKELEKMRRAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGV 226 >gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] Length = 258 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD + D NIG +LR+A A +IT+ + S ++ GA EHI Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + LQK+ + + T SS + K + IA +LG EG+G+R + A Sbjct: 173 -----VNEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 +A L PG ++LNV A +V Y + Q H+ Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] Length = 177 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 15/157 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-----GIITTKRYSPSESAVLAKSASGALEHIP 188 +++VLD+V HN+G+ R++ AF+ + GI T + E L ++S EH P Sbjct: 25 VVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTALGATSSVDWEHAP 84 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245 +L LQK+ + G+Q + + + + + + K A + G E G+ + Sbjct: 85 -----DLVSRLQKLKAEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFGNEVHGVDEEIM 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 + + + G + N+S + L ++ +N F Sbjct: 140 KISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRF 176 >gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] Length = 176 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HN+G++ RS AF + + + SA + K+A G + + S Sbjct: 25 LVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGGENSVEWKYFS 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 A++++ G+ + Q ++ + K A++ G E KG++ + S Sbjct: 85 QTEKAIRQLRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVVFGNEVKGVKQTVIDCCDS 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS A V ++ FAK Sbjct: 145 CLEIPQLGTKHSLNVSVTAGVVVW----EFAK 172 >gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPYIRISN 194 VLD + DP N+G I+R+A A II TK + +S+ G++ +I Y+ Sbjct: 110 VLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGSIFNMNIVYMEELQ 169 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L K + F L ++S + + + ++K A+I G+EG G+ + A + Sbjct: 170 LIQFL-KEKKYKFLVTALENNSIEYTDITL-SEKNAIIFGSEGNGVSDNFLKVADETVII 227 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ A+ + LY Sbjct: 228 PIYGSAESLNVAMASGIILY 247 >gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] Length = 221 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186 R + L +V+D+VN PHN+ AI+R SCD + + ++ S S++ K +A+GA Sbjct: 17 RQTDLTLVMDNVNKPHNLAAIIR-----SCDAVGIHQVHAISRRSSIRTKQHTAAGASRW 71 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + ++ +K+ G Q + + + I + A+++G E G + Sbjct: 72 VKVGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGEELTGPSEEAM 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A ++ M G++++LNVS AAA+ L+ Q Sbjct: 132 NLADHFVYIPMFGMVESLNVSVAAALILFEAQRQ 165 >gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] Length = 175 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N +A+ + G+ + + E+ D K A+++G E KG++ + + + Sbjct: 85 NCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 246 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N++ ++++D + DP N+G ++R+A A D I+ K + + +++ G++ HIP I Sbjct: 103 NAKQVLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRASQGSVFHIP-I 161 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L+ + G + + Q + AL+LG EG+G+ K T Sbjct: 162 LTTELSGFIADFEG---DVYGTALEDAVVYNQIPSQETFALLLGNEGEGVNDKLLSQTTQ 218 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ +Y Sbjct: 219 NLTIPIYGKAESLNVAIAGSIVMY 242 >gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4] gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4] gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue; AFUA_4G13450) [Aspergillus nidulans FGSC A4] Length = 617 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 86/308 (27%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL-----------ATKNALARLDWDANLPHPFPVKTVPP 98 F+YG V AAL R++++L A K L +L N+ Sbjct: 195 FIYGTTAVEAALRCCKRQLYKLYLYQTAGEEELSADKRVLRKLALSKNVKVKLAFGEWN- 253 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------------------------ 134 + +DK+ H G LE +PL + A+R QL Sbjct: 254 RLLDKMSAGRP-HNGCVLEVSPLPRTPIQALRPVQLGDGEFKVELAPQTREEAKVNGTND 312 Query: 135 -----------------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +++L+ V D N+G+I+RSA D I+ R+S S V Sbjct: 313 CIKINNSYTQQQIRYPVVVLLEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTI 372 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----------LSSDSKKPLEQEIKND 227 K+++GA E++ + + N D +++ + G++ L + +P + N+ Sbjct: 373 KASAGAAENMTLLDVQNEVDFIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANE 432 Query: 228 K----------IALILGAEGKGLRPKTQETATSMAHLH----MPGI--------IKALNV 265 +++G EG GL + A S+ + +PG+ + +LNV Sbjct: 433 GHPDALIGQSPSVIMMGYEGSGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNV 492 Query: 266 SNAAAVAL 273 S AAA+ + Sbjct: 493 SVAAALLM 500 >gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] Length = 282 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A GI + S ++ G++ IP Sbjct: 122 RVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFSIPL 181 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKT 244 R + +W F+ + + + K ++ + KN I L++G E KGL Sbjct: 182 YRCNE-----SAFLNWSTNFKGMIVGTHLKGSVDYRAIDFKNGPIILLMGNEQKGLSDVL 236 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++A + G +LN++ A A+ LY Sbjct: 237 ANHCNNLARIPQCGYADSLNLAVATALMLY 266 >gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] Length = 231 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 227 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 255 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ + P + L+ ++ + ++VLD + DP N+G I+R A A I+ TK Sbjct: 88 QGVII-IYPYIKGALENLQKN--VVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDC 144 Query: 172 ESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + + +S+ G++ +I Y+ L AL K + L +S + ++ +K Sbjct: 145 YNEKVVRSSMGSIFNMNIIYMEEEELI-ALLKKEEYKIVVTALEKNSVSYTQMKLA-EKN 202 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++ G+EG G+ + + + GI ++LNV+ A+ + LY T+ Sbjct: 203 AIVFGSEGDGVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILYKTK 250 >gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 3/186 (1%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++++ E + + P + D ++VLD V NIGAI Sbjct: 77 IPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIGAI 136 Query: 151 LRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +R+++A GII S L +++ G + +P + +S +A+ + G Q Sbjct: 137 VRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGMQL 195 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + L +D +++ N D++AL+ G+E G +E +++ + M ++LNVS + Sbjct: 196 MTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVS 255 Query: 269 AAVALY 274 +AL+ Sbjct: 256 LGIALH 261 >gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 260 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 28/261 (10%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARL 81 R++ K+++ +Q S + ++L G H SAAL P+ +F + A Sbjct: 11 RDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAVAVFSESFWRQA---- 66 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-AP----LLSPTLDAVRNSQLLM 136 P + + I ++ + ALE+ AP L P + + + Sbjct: 67 ------PAEYARAAIKNVVIADVLWSDIS----ALESPAPMGFVLPLPEAEGLDGRMPTV 116 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + D N+G+ILRSA AF + K + S + ++ GA H + L Sbjct: 117 VLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGA--HFALRLVEGLA 174 Query: 197 DA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A + ++ + SS L + I+G EG+G+ P Q+ A + Sbjct: 175 PADIDRLE---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIA 231 Query: 256 MPGIIKALNVSNAAAVALYIT 276 PG ++LNV AAA+ L+ + Sbjct: 232 QPGGEESLNVGAAAAICLHAS 252 >gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 13/156 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ +L+ V DP N G I+R+A + D ++ T R Y+P + +S +G+L HIP Sbjct: 124 LVAILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPK----VVRSTTGSLFHIPV 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQE 246 ++L + + + G + + + L A + G E +GL + Sbjct: 180 AVGADLPEVVSCARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLG 239 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +++N++ AA+V LY ++ FA+ Sbjct: 240 LVDRAVAVPIYGRAESMNLATAASVCLY--ESAFAQ 273 >gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes WB4] gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes WB4] Length = 177 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HN+G++ R+A AF + + S A + K+A GA + + Sbjct: 25 LIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAENTVTWKYFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 + AL+++ + + + + L E+ + K A++LG E KG++ + Sbjct: 85 DTHQALEELKAQAYTVFAIEQAAGSTLLPELALNPAMKYAVVLGNEVKGVQQSVVDACDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQFGTKHSLNVSVTGGIIIW 168 >gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 224 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 +VLD + DP N+G I+R+A F II ++ + +A + ++ G+L H+ Y+ ++ Sbjct: 83 IVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVDAYNAKVVQATMGSLARIHVHYVNLA 142 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L + + G D + + + + ++LG EG G+RP+ Q Sbjct: 143 QL------ITNTKLPVFGALLDGENIYQTNFGSQGL-IVLGNEGNGIRPEIQALIQKPVT 195 Query: 254 LHMPGIIKALNVSNAAAV 271 + + G ++LNV+ A AV Sbjct: 196 IPLLGKAESLNVAIANAV 213 >gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 269 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189 LL+V + P NIGA+LR+A A D +I T Y+P+ + +S+ G + +P Sbjct: 118 LLLVAEAPEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPN----IIRSSVGCVFTVP- 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + + + + + + + KP + ++ A+++G E +GL + +T Sbjct: 173 IATGTTAEVIDFLKAKNISSYCAALTASKPYYEVSFSEASAIVVGTEDQGLTDEWLTHST 232 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G+I ++NVS AAAV ++ Sbjct: 233 QNIIIPMEGVIDSMNVSVAAAVLIF 257 >gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 67/141 (47%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L + DP N+G I+R+A A +G++ + + ++++G +P ++ Sbjct: 110 LGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRASAGQWFRLPMQTVT 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L+ + G+Q + + Q L++G EG+GL P Q+ + + Sbjct: 170 DGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGLPPAYQDASFTALR 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + +++LNV+ A AV LY Sbjct: 230 IPQEPNVESLNVAIATAVLLY 250 >gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As] gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] Length = 262 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD V D N+G +LR+A A C + + + S + +SA GA E P+ Sbjct: 114 LILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSAMGAHFVIPVFEDPPW 173 Query: 190 IRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ N+ + +++ Q T+ D K+P + I G EG+G+ Sbjct: 174 EQVLNIVP--RPIYATHMQADTVLYELDLKEP---------VTWIFGNEGQGISDALVAK 222 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 +++ + +++LNV+ +AA+ LY + Q+ F+K Sbjct: 223 CSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259 >gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 283 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 5/146 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V D P N+G ++RSA AF D ++ + ++++G+L +P + +S Sbjct: 131 LIVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVS 190 Query: 194 NLTDAL-----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + L ++ +G ++ L++G E +G+ ++ Sbjct: 191 SVDEILAFRDARRASGTDLHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRDGC 250 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ ++ + G +L +A AVALY Sbjct: 251 DTVVNIPIGGAASSLGAPSAGAVALY 276 >gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] Length = 228 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190 +L V++ V N AI+RS A + ++ ++ + P+ S +E +P Sbjct: 42 ILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNIFDPNLSVTKGADTWVEVEKMPRN 101 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249 + S L+K+ G++ + +S ++ + + K +K IAL+ G E +G+ + + A Sbjct: 102 KAS-----LEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELLDFAD 156 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G K+ NVS AAA+ +Y Sbjct: 157 ETLAIPMYGFTKSFNVSVAAAICMY 181 >gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus] gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581] gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19] gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021] gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849] gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200] gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1] gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1] gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2] gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2] gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1] gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1] gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2] gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2] gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2] gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2] gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2] gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2] gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2] gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2] gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2] gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2] gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358] gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1] gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2] gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1] gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2] gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1] gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2] gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1] gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2] gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95] gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902] gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001] gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB] Length = 269 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 3/186 (1%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++++ E + + P + D ++VLD V NIGAI Sbjct: 74 IPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIGAI 133 Query: 151 LRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +R+++A GII S L +++ G + +P + +S +A+ + G Q Sbjct: 134 VRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGMQL 192 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + L +D +++ N D++AL+ G+E G +E +++ + M ++LNVS + Sbjct: 193 MTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVS 252 Query: 269 AAVALY 274 +AL+ Sbjct: 253 LGIALH 258 >gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 257 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 16/147 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DP N+G ++R+A A G++ R + + +S G+ H+ + Sbjct: 112 LLLDRVQDPGNVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTLLE---- 167 Query: 196 TDALQKMHSW--GFQTIG--LSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET 247 +H W F+ IG + P Q + ALI+G EG+G+ Sbjct: 168 ----GDLHKWVQDFKRIGAPVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAE 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ M G ++LNV+ +A + ++ Sbjct: 224 TTTNLYIPMRGDAESLNVAVSAGILMF 250 >gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] Length = 268 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 7/250 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANL 87 D++ + + +++ + G VS L + + LL + A L D A L Sbjct: 16 DFRHLSTADRRPDRPGGRGFVIAEGTVVVSRLLAS-RYPVRALLGVQRRFAELAGDLAGL 74 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P V + +T+ ++VG LA+ P + V + + VL+ V D N+ Sbjct: 75 DVPQYVASA--ETMAEVVGFHLNRGILAVADRPAPLTVSEVVGGTGPIAVLEGVGDHENL 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G++ R+A A G++ S + + G + +P+ +++ L + + GF Sbjct: 133 GSLFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFGHLTDWPGGLDDLRARGF 192 Query: 208 QTIGLSSDSKK-PLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + PL +E ++AL+ GAEG GL A + MP + +LN Sbjct: 193 AVAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLN 252 Query: 265 VSNAAAVALY 274 ++ AAAVA Y Sbjct: 253 IATAAAVAFY 262 >gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 116 VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTF 175 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++H + SS +++ + + + +LG EG G+ + T ++ + Sbjct: 176 ESVHARLH---VPLLATSSHARQAVFDVPLHKPVGWVLGNEGAGVSEQWLSVTTPIS-IP 231 Query: 256 MPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 232 QPGGMESLNVAAAAAICLF 250 >gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4] gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4] Length = 258 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD + D NIG +LR+A A +IT+ + S ++ GA EHI Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + LQK+ + + T SS + K + IA +LG EG+G+R + A Sbjct: 173 -----VNEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 +A L PG ++LNV A +V Y + Q H+ Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 324 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 39/218 (17%) Query: 96 VPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNI 147 VP ID E V T LLS ++++ R L+ V ++DP N Sbjct: 92 VPVSVIDDKAASALSETVSHSGVCATCQLLSTSVESCINRARRGRGLVAVGIDMSDPGNA 151 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G +R+A A D ++ + +SA+G++ IP R ++T++L + S GF Sbjct: 152 GTFIRTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLADLSSAGF 211 Query: 208 QTIGLSSDSKKPL--------EQEIKNDKI-----------------------ALILGAE 236 Q + + D + L + I+ + A + G E Sbjct: 212 QIVATTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSAWLFGNE 271 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + A + + G ++ NV+ AAA+ LY Sbjct: 272 AHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLY 309 >gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 219 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA------V 175 + TLD R L ++++ V+ PHNI AI+R+ CD + ++ ++ A Sbjct: 9 ICQTLDR-RQPDLTVLMEDVHKPHNISAIIRT-----CDAVGVMAVHAMNQVADGDVLDT 62 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234 ++ A G+ + + R ++T A+ ++H F+ SD A+++G Sbjct: 63 YSQVAQGSEKWVDLNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMG 122 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AE G+ E + M G++++LNVS AAAV L+ Q Sbjct: 123 AERWGVSDTAAELVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQ 167 >gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD + D NIG +LR+A A +IT+ + S ++ GA EHI Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + LQK+ + + T SS + K + IA +LG EG+G+R + A Sbjct: 173 -----VDEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 +A L PG ++LNV A +V Y + Q H+ Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 294 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L+ VL + DP N G +LR+A A +I + ++++G+L H+ Sbjct: 124 RGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAGSLFHVDV 183 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQ 245 +R ++ A++ + + G + + + L+ ++A + G+E GL + Sbjct: 184 VRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAAPTAWLFGSEAHGLPDELT 243 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + + G ++LN++ AAAV LY Sbjct: 244 GAADARVRVPLHGRAESLNLAAAAAVCLY 272 >gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHNI A++R+A A + + S L SA+G+ + Sbjct: 15 CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 N+ DA+ + + G Q + + +EI + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 19/165 (11%) Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169 P +DAV R L +V++ DP N+ A+LR+ AF GI T K Y Sbjct: 11 PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GIQTLHAVEGPMKPYD 67 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 ++ K + A + + R S+ + L + S GF + P+ K Sbjct: 68 RNK-----KISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGK 122 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL+ G E +G+ + A + + M G +++LNVS AAA++L Sbjct: 123 VALVFGNEQRGVSEEALAVADACYAIPMRGFVQSLNVSVAAAISL 167 >gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A GI P +E SA+G+ Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQVHAIWPTTEMYTRLSSAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245 + +++TDA+ + S G Q + K +EI +++G E G+ + Sbjct: 71 VQVKTHAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQEKTGISEEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 ALADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHN+ A++R+A A I + S L SA+G+ + Sbjct: 15 CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIHAI--WPTSRMKTLVSSAAGSNSWVQ 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 N+ DA+ + + G Q + + +EI + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] Length = 247 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R + + L+ V DP N+G + R+AVAF D + + ++A GA + Sbjct: 95 AGRRTTRTLALEGVQDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRL 154 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQ 245 ++ + + + G + + ++ E D K L+LG EG+GL Sbjct: 155 NFVTFDSFDELERAARELGMDLYAAEPRADEDVDPERVGDVAKACLVLGTEGQGLSDDAL 214 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + M G +++LNV+ A + Y+ + Sbjct: 215 RACKPVA-VPMSGEMESLNVAIAGGILCYLMR 245 >gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 29/257 (11%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWD 84 K+++S + L L GV V+ AL + + L A T A L Sbjct: 11 KRIRSLASDRHERRRERMLVLEGVRLVADALESGATLTLTLYAPDQLQLTPAGAALLQKL 70 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVH-QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 LP + PQ + + VH QG+ AL + P ++P LL+V+D V Sbjct: 71 RYLPASYEAT---PQVV--AAASDTVHPQGVVALASWPHVAPG-----KPGLLLVIDAVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLT-D 197 DP N+G +LRSA A ++ T Y+P + +SA GA H +L+ D Sbjct: 121 DPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPK----VVRSAMGA--HFRLAMEQDLSWD 174 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A+ + + +++ P AL++G E GL + AT + M Sbjct: 175 AIGERLASVDHVYAADPEARMPYYAADWRQPSALLVGNEAHGLSDAARRLATKQIAIPMR 234 Query: 258 GIIKALNVSNAAAVALY 274 G ++LNV+ AA+V L+ Sbjct: 235 GGTESLNVAVAASVILF 251 >gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] Length = 221 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 23/165 (13%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPS-------ESAVLAKS 179 +R L +++D VN PHN+ AILR+ CD G +T P S + S Sbjct: 15 LRQPTLSVLMDEVNKPHNLSAILRT-----CDAVGAMTAHAVPPQSMSLGSFRSRIFEAS 69 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILG 234 + A + + + ++ +A++ + G Q + S D ++P ++LG Sbjct: 70 SGSAHKWVSVQQHASALEAIRTLQGQGVQVLATHLSQRSVDYREP----DYTRPTCVLLG 125 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AE G+ E A + + M G++++LNVS AAA L+ Q Sbjct: 126 AEKFGVSDVAAEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQ 170 >gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 25/270 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H + +KK+Q+ +K R Q L G H V+ A+ I Sbjct: 2 EKINSLQNAHV-------KAWKKLQT--KKGR--KQQGQYLLDGWHLVNEAVK-AHVAIQ 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128 LL T LA + +L H FP + K + QG+ AL T P L Sbjct: 50 TLLITAKQLAT---EPDLTH-FPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQ 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 106 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 165 Query: 189 YIR--ISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 I + L D LQ S +G + L+ + + L+ + LI+G EG G+ + Sbjct: 166 LISTDLDKLVDQLQAQGSPVYGSE---LNPQAARYLDIDAPA-SFGLIMGNEGNGMSREL 221 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA V ++ Sbjct: 222 LARTDQNLYIPIKGQAESLNVAVAAGVLMF 251 >gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 238 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188 R + ++ + V+DPHN A+LRSA AF + +P E + + + A L Sbjct: 45 RTRYITILTEAVDDPHNQAAVLRSAEAFGIQDVHVVTGAAPFEPNKWVTRHADKWLNVHK 104 Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S++ A++ + G+Q + PLEQ + L+ G E +G+ + Sbjct: 105 H---SSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEALAL 161 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S AAA++LY Sbjct: 162 ADGKFVIPMNGFVQSFNISVAAAISLY 188 >gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 13/157 (8%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 AP+L L V VLD + D N+G+ILRSA AF + K + S + + Sbjct: 106 APVLQAGLPTV-------VLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLR 158 Query: 179 SASGALEHIPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + GA H + L+ D + + + SS L + ILG EG Sbjct: 159 AGMGA--HFALHLVEGLSVDDIDTLR---LPLLATSSHGGDLLHRACLPWPCGWILGHEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ Q+ AT + + PG ++LNV AAA+ L+ Sbjct: 214 QGVSEALQQRATHLIRIAQPGGEESLNVGAAAAICLH 250 >gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116] Length = 227 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P + L +++GA + Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ + G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163 >gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 306 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ ++ ++ V DP N+G + R+AVAF D + + ++A GA + + Sbjct: 152 RDVVRVLAVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDF 211 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247 + + D + +K+ ++ E K L+LG EG+GL Sbjct: 212 VAFDSFDDLASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRA 271 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + M G +++LNV A V +Y+ Q Sbjct: 272 CKPVA-IPMSGEMESLNVGIAGGVLMYLMQ 300 >gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 257 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 25/270 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H + +KK+Q+ +K R Q L G H V+ A+ I Sbjct: 4 EKINSLQNAHV-------KAWKKLQT--KKGR--KQQGQYLLDGWHLVNEAVK-AHVAIQ 51 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128 LL T LA + +L H FP + K + QG+ AL T P L Sbjct: 52 TLLITAKQLAT---EPDLTH-FPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQ 107 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 108 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 167 Query: 189 YIR--ISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 I + L D LQ S +G + L+ + + L+ + LI+G EG G+ + Sbjct: 168 LISTDLDKLVDQLQAQGSPVYGSE---LNPQAARYLDIDAPA-SFGLIMGNEGNGMSREL 223 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA V ++ Sbjct: 224 LARTDQNLYIPIKGQAESLNVAVAAGVLMF 253 >gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD + D NIG +LR+A A +IT+ + S ++ GA EHI Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + LQK+ + + T SS + K + IA +LG EG+G+R + A Sbjct: 173 -----VDEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 +A L PG ++LNV A +V Y + Q H+ Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] Length = 269 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N+++++ D + DP N+G I+R A D +I ++ + + + ++G++ +P Sbjct: 112 KNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVIRGSTGSIFRVP- 170 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETA 248 I +S+ ++ W + I K QE + LILG E G R K + Sbjct: 171 IWVSDKKTFIEFFKGW--KVIIADPKGSKVYFQENLRESFVLILGNEAWGTRKEKYIDLD 228 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + +LNVS AA+V L+ Q Sbjct: 229 PILLKIPLREGVDSLNVSIAASVFLFEAQRQ 259 >gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 234 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 3/180 (1%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P I+ + KE + L P + S ++VLD + DP N+G ++RSA A Sbjct: 56 PGTFIESSLMKELSQTKTVFDQMALCKPISENNLLSDKILVLDDIQDPANLGVLMRSASA 115 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSD 215 F + + + + +S+ GAL + R S L+++ + Sbjct: 116 FGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGST-KSFLEEVKEQNYSIFSAFPQK 174 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S ++ K+ K L+LG EG+G+ +T+ + ++ +++LNV+ A ++ +Y+ Sbjct: 175 SNITIKDAKKHPKKVLVLGNEGQGISSETEGLSDYFVNIFTQN-VESLNVAVAGSILMYL 233 >gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505] gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505] Length = 310 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 19/248 (7%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94 N +++H + G V A+ + ++ + T+ AL R WD + V Sbjct: 59 NARAKH----RRFLVEGPQGVREAVRHVPGRVLDVYLTEAALERHSEIWDEAVTAGLYVH 114 Query: 95 TVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 Q +D + QGL A E A A+ ++L+ VL DP N G I Sbjct: 115 VTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGNAGTI 171 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A D ++ + + + +S +G+L H+P + L DA+ +H+ G Sbjct: 172 IRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAGLTV- 230 Query: 211 GLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L++D + + + + A +LG E GL P+ A ++ + + G ++LNV+ Sbjct: 231 -LAADGRGDFDLFEVESLLEAPSAWLLGNEAHGLPPEALSRADAVVSIPIYGKAESLNVA 289 Query: 267 NAAAVALY 274 AAAV LY Sbjct: 290 AAAAVCLY 297 >gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 271 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +V +H+ P N+GAILR+A A D +I + + + + + G + +P + + Sbjct: 124 LYVVAEHLEKPGNLGAILRTADAAGVDAVIAADPVTDWGNPNVVRGSKGTVFSVP-VATA 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + G + + ++ Q +A+ +GAE GL E AT Sbjct: 183 PTPEVLDFLAGRGMTLVATTPHTEVLHTQVDLTGPVAIAVGAEKTGLTASALEGATHRVR 242 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ +AA+ +Y Sbjct: 243 IPMVGRANSLNVATSAAIVVY 263 >gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CMR15] Length = 259 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCT 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++H + SS ++ + N + + G EG G+ + T ++ + Sbjct: 175 FESVHARLH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV AAA+ L+ Sbjct: 231 PQPGGMESLNVGAAAAICLF 250 >gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] Length = 209 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186 R L ++LD VN PHN+ AILR +CD + + ++ V A S++G + Sbjct: 8 RQPDLRVLLDQVNKPHNLAAILR-----TCDAVGVFQAHAVWPGGVPAVHHHSSAGVGKW 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + ++ A+Q +H+ G + + Q A+++GAE G+ Sbjct: 63 VNVVAHPDVCSAIQALHNEGLRVYAAHPVAGAVDYRQADYTVPCAVLMGAELWGVSEAAC 122 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G+ ++NVS AAAV LY Q Sbjct: 123 QRVDEFITIPMFGLGASVNVSVAAAVILYEAQR 155 >gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] Length = 181 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF I + A + K+A GA E I + + Sbjct: 26 LVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAEESIAWRYFA 85 Query: 194 NLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +A++ + + GF Q G + LE + K A++LG E KG+ + Sbjct: 86 TAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLE---RRQKYAVVLGNEVKGVHQSVVDL 142 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS AA + ++ FAK Sbjct: 143 SDGCLEIPQWGTKHSLNVSVAAGMVVW----EFAK 173 >gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] Length = 275 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V + +P N G ++R A A + ++ + ++++G++ IP I Sbjct: 122 RLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVA 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 + + AL + G Q + D +K L+ ++ A + G E GL + A Sbjct: 182 PDTSAALGALRGAGLQALASVLDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHH 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AAA+ LY Sbjct: 242 RVRIPMSGGAESLNVAAAAAICLY 265 >gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] Length = 175 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N +A+ + G+ + + E+ D K A+++G E KG++ + + + Sbjct: 85 NCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 229 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A SA+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + S G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like [Xenopus (Silurana) tropicalis] Length = 278 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 AP L P + V VLD + D N+G+ILRSA AF ++ K + S + Sbjct: 113 AAPALQPGVATV-------VLDRLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVL 165 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ GA H I L ++ + G + SS L + A +LG EG Sbjct: 166 RAGMGA--HFALRLIEG--GGLAQIRALGLPLLATSSHQGDYLHRAALPWPCAWVLGHEG 221 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ P + A + PG ++LNV+ AAA+ L+ + Sbjct: 222 QGVAPALEALAAQRIRIAQPGGEESLNVAAAAAICLHAS 260 >gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] Length = 275 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V + +P N G ++R A A + ++ + ++++G++ IP I Sbjct: 122 RLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVA 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 + + AL + G Q + D +K L+ ++ A + G E GL + A Sbjct: 182 PDTSAALGALRGAGLQVLASVLDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHH 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AAA+ LY Sbjct: 242 RVRIPMSGGAESLNVAAAAAICLY 265 >gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] Length = 265 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 73/145 (50%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ + +++LD + DP N+G I+R+A + D II K + + +S G++ + Sbjct: 115 QDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGSIFDMNI 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I+ + +A+ + + F + ++ + + KIAL++G E G+ + + Sbjct: 175 IQTTQ-DEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGNEANGINDELISKSD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + +AA+ +Y Sbjct: 234 KLVKIPIYGNAESLNAAISAAILMY 258 >gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] Length = 252 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 6/179 (3%) Query: 98 PQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P ++ + V QGL A+ P L+P D + + L VLD V DP N+G I R+A A Sbjct: 74 PDSLLRAVSSVETPQGLLAVCRNPGLTPP-DKLTGGRYL-VLDGVQDPGNLGTIWRTADA 131 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSD 215 F DG++ + S ++ GA +P AL L D Sbjct: 132 FGADGLLLVNGCADPWSPKTIRATMGACFRLPAWETDLETVRALLDGADIPLYATALRED 191 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ++K + A+++G+EG+G+ + + M ++LN + AA V L+ Sbjct: 192 TVDVRDVDLK--RAAVVIGSEGRGISDEALALCRRTIKIPMRARCESLNAAMAAGVVLW 248 >gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 297 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+GA++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 273 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 TLD ++ S L++++ + P N+G ILRSA A D +I + + +S++G Sbjct: 110 TLDDLQLSDPPFLLIVEAIEKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSSTG 169 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L +P + S+ + ++ + G +TI + + +A+++G+E GL Sbjct: 170 VLFSMPTVTASS-DEVIKWIRQKGIRTIATTPHTDILYTDTDLRGPLAIVMGSEQFGLSE 228 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + M G +LNV+ A + L+ Sbjct: 229 KWLSACDTKVLIPMAGQADSLNVAMATLITLF 260 >gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49] gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49] Length = 263 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 16/251 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 KK+ + KSR + + G VS A+ +I LL +A L+ N+ Sbjct: 14 KKINALTDKSRERKKQGVFIVEGAREVSLAIKG-HHEILTLLFCPE-IADLNALPNVADS 71 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147 +V KI + +A+ TLDA+ + + L+++ + P NI Sbjct: 72 VEKISVSLDVYQKIAYRATTEGVIAIVKNS--KTTLDALVFPKQNPLILIAEAPEKPGNI 129 Query: 148 GAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 GA+LR+A A D ++ T Y+P+ + +S+ G + + +++ D + + Sbjct: 130 GALLRTADAAHVDAVLIANPRTDLYNPN----IIRSSVGCV-FTNQVAMASSEDIIAFLK 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +P + A+++G E GL ++ +T+ H+ M G I +L Sbjct: 185 KNNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDSL 244 Query: 264 NVSNAAAVALY 274 NVS AAAV L+ Sbjct: 245 NVSVAAAVLLF 255 >gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 299 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL +V DP N G +LR A A D ++ T + +++ G+L H+P Sbjct: 136 RLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSLFHLPVATG 195 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + +A+ + + G + + ++ L++E+ + + A I G E GL T+ A Sbjct: 196 VPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAPTAWIFGNEAWGLPEATRALA 255 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN++ AAAV LY Sbjct: 256 DEVVRVPIHGRAESLNLATAAAVCLY 281 >gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 227 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L L+ V+ P+N+ A++R+A A GI P++ L+ +++GA + Sbjct: 16 RQADLTFCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNDMRTLSHTSAGARNWVEV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ ++ G Q + + SD+ + A+ILG+E G + ++ A Sbjct: 73 ETHDSIGKAVAELKDQGMQILVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEEAKQLA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+AV +Y Q Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVIMYEAQRQ 163 >gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALE 185 A R L + ++ V+ P+NI AI+R+A A GI P S + L +++GA Sbjct: 14 ATRQPDLTVCMEEVHKPNNISAIIRTADAV---GIHQVHAVWPKNSKMRTLGGTSAGARN 70 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244 + + N DA + + G Q + + +EI K A+++G E G+ + Sbjct: 71 WVDVVTHDNTPDAFAALKAKGMQILVTNLSETAVDFREIDYTKPTAIVMGQEKTGISQQA 130 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 LALADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 165 >gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + L S K L K ++ALI+G E G+ A ++ Sbjct: 173 ADVITDFQDAAIPVYASLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLADEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 233 PIKGQAESLNAAVAAGIMIY----HFA 255 >gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 269 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 1/143 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ ++ D++ N+G++ R+A II E + + K+A G + + + Sbjct: 118 RITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTEKLVAWQYF 177 Query: 193 SNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + T+A+ H GF L + D+ K + Q + +A+++G E G+ E Sbjct: 178 PSTTEAIAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVIGNEALGIESSILELCDEF 237 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L G +LNV A + LY Sbjct: 238 ITLPQLGWKNSLNVGVATGIVLY 260 >gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155] gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155] Length = 233 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + +VL+++ HN AILR+A AF I + + + ++ SA L+ Sbjct: 39 RTEHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKA 98 Query: 189 Y--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + +I N L + G++ S + E+ D+ IAL G E GL Sbjct: 99 WNESKIDNTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTELTGLSEVAH 158 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E A M ++ M G I++ NVS A+A++L Sbjct: 159 EMADYMTYIPMNGFIQSFNVSVASALSL 186 >gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] Length = 176 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 75/148 (50%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + S ++++LD++ +NIG++ R++ AF + I + + K+A G+ E + + Sbjct: 21 KKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGSTETVDW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQE 246 + N D ++K+ G + + ++S L + + N K A + G E KG+ + + Sbjct: 81 EYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLPQPNTKYAFVFGNEVKGVSQEVVD 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + G +LN+S +A V ++ Sbjct: 141 ISDTVIEIPQYGTKHSLNISVSAGVVIW 168 >gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 +VLD + DP N+G +LR+A F G+I Y+P + ++++G P + Sbjct: 111 FLVLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPK----VIRASAGTAFKFPVL 166 Query: 191 RIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ L D + K + F S+ PL K + +G EG+G+ + Sbjct: 167 RMEADELKDIILKNNIPLFLA---ESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLKSLP 223 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG I++LN + A + +Y Sbjct: 224 HQKISIPMPGKIESLNAALAGGIIIY 249 >gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 180 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 29 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVE 88 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + G+ + + E+ K K A+++G E KG+R + + + Sbjct: 89 NSVEAVDNLKKEGYVVYSVEQAEGSIMLDELALDKEKKYAVVMGNEVKGVRQEVIDHSHG 148 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 149 CIEIPQYGTKHSLNVSVTAGIVIW 172 >gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 170 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/150 (22%), Positives = 76/150 (50%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 Q++++ +++ P N+G I+R + AF + I ++ + +++ + + Y + Sbjct: 17 QIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRASRNTYKTMDYEFV 76 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDK-IALILGAEGKGLRPKTQETAT 249 ++ ++ G+ I L + +P+ I N K + LI+G+E +G+ + + Sbjct: 77 VDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVLIIGSERQGISEELLQFCQ 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 + H+ M G ++NV NA ++ L+ IT+N Sbjct: 137 NHYHIPMFGGNSSINVVNALSIGLFKITEN 166 >gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 189 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++++LD++ +NIG++ R+A AF + + + + K+A GA E + + Sbjct: 23 RKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGATETVVW 82 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQE 246 + + D ++K+ + + + K +KIA+I G E KG++ K Sbjct: 83 EHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIAVIFGNEVKGVQQKVVS 142 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S + V L+ Sbjct: 143 ASDGVIEIPQAGSKHSLNISVSTGVILW 170 >gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 268 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVA------FSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L++VL+ V P N+GAILR+A A F CD T Y+P+ + +++ GA+ + Sbjct: 122 LILVLETVEKPGNLGAILRTADAAGVHAVFLCDP--QTDWYNPN----VIRASLGAVFTV 175 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P ++ DAL + + ++ P + IA ++G E G+ E Sbjct: 176 PVFTVAA-ADALNWLQMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEA 234 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G + ++NVS + A+ L+ Sbjct: 235 AQQRVIIPMHGQVDSMNVSVSTAILLF 261 >gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130] gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130] Length = 285 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 13/172 (7%) Query: 121 LLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L S T DA + +VLD V DP N+G I+R+A A G++ + Sbjct: 114 LKSQTTDAAKITPQGDTCWLVLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEA 173 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSW---GFQTIGL---SSDSKKPLEQEIKNDKIA 230 ++ G+L P +R+S D L SW G +G + + ++ K + Sbjct: 174 VRATMGSLFAKPLVRLSR-ADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAK--PLL 230 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L++G E +GL + + +A + M G +LN++ A + + ++H K Sbjct: 231 LLMGNEQQGLDDEMAASCDHLALIAMGGAADSLNLAVATGIVTFAARSHALK 282 >gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] Length = 256 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 11/160 (6%) Query: 121 LLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175 L S L+ + + Q +++LD + DP N G I+R+ +A + +I TK Y+P Sbjct: 93 LYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPK---T 149 Query: 176 LAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + SG + +I Y N+ L K + T L DS + E++ + A I G Sbjct: 150 VRATMSGIFKLNIIYETPENIVKFLNKKNYLKIAT-ALHEDSVSYEKIELRKNN-AFIFG 207 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG G+ E + A + + G I++LNVS A + LY Sbjct: 208 HEGGGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLY 247 >gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str. Ether] gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457] gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90] Length = 297 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+GA++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis] Length = 451 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%) Query: 111 HQGLALETAPLLSPTLDAVRNSQ----------LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L+ +PL + + + + + LD V DP N GA LRSA Sbjct: 359 HQGVVLDCSPLEFEPMSELPAAPAAPPPGGRLPVWLCLDEVMDPQNFGAALRSAHFLGVA 418 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIP 188 G++T R S SA ++K+++GA+E +P Sbjct: 419 GVLTCHRNSAPLSAAVSKASAGAMELLP 446 >gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] Length = 229 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + + +A SA+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 N+ DA+ + + G Q + K +EI + +++G E G+ + Sbjct: 72 EVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEALR 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 223 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185 R L ++++ VN PHN+ AILR+ CD G+ S + + +A G+ + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 + N A+ + + GF+ G + +S+ + + +LGAE GL + Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AA++ L+ Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161 >gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320] gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 239 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A+R L + L+ V+ HN+ A++R+A A GI P E +L A+G+ Sbjct: 14 AMRQPDLTVCLEEVHKSHNVAAVIRTADAV---GIPKIHAIWPEEKMRMLVSPAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + + DA+ + G Q + K +EI + +I+G E G+ P+ Sbjct: 71 VNVNTHPTIADAINTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMGQEKTGISPEAI 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQ 164 >gi|165975661|ref|YP_001651254.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307249419|ref|ZP_07531410.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|165875762|gb|ABY68810.1| conserved putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306858561|gb|EFM90626.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 345 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG + A I +L AT +L D + L H V + Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDILSYLAEHKKAYHVVDRAEM 163 Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +++ G E H G L + P L L R L++LD VN+ N+G I+R+ Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + +G+I + + SA A+ A G LE + + + AL ++ + G+Q + L+ + Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRNK 280 Query: 217 K 217 + Sbjct: 281 Q 281 >gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 11/157 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183 A R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ SA + S Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQV 73 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 H S++ DA+ + S G Q + SD+ + +++G E G+ Sbjct: 74 KTH------SHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGISQ 127 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + M G++++LNVS A+A+ LY Q Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri] gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri] Length = 308 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 16/208 (7%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLD 127 A A AR +A P+ F + T E + +ALETA L L Sbjct: 8 AGGGAEARDGAEARFPYDFGFEFAGGTTCGT---SEMIS--MALETASDGRMARLENVL- 61 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A R LL V++ V D N+ A+ RS A+ C I+++K + S +++ GAL+ Sbjct: 62 ANRTFDLLPVMEGVYDVGNMLAVCRSTEALGIGCAAIVSSKGLNFKASG---RTSGGALK 118 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 R + T AL+ S G + + + P+ A++ G E G+ + + Sbjct: 119 WQRVERFDSTTAALRAAKSRGMRVLTTEFEGAYPMSHYDWTIPTAVVFGNEKTGVSEEAR 178 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN+S AAA+ + Sbjct: 179 AMSDGGVFIPMYGFTESLNISVAAALVM 206 >gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 3_1_12] gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 638R] gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 175 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R+A AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N + + + S G+ + + E+ D K A+++G E KG++ + + + Sbjct: 85 NAVETVDNLRSEGYVVYSVEQAEGSIMLDELTLDRSKKYAVVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4] gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4] Length = 279 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP N+G ++R+ A G++ + + ++ G+L H+P I+ + Sbjct: 133 VALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGSLFHVPIIKTAK- 191 Query: 196 TDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 DA L W +G + + + L++G E +GL ++ + Sbjct: 192 -DAFLDFAKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASMTRVCKTLIRI 250 Query: 255 HMPGIIKALNVSNAAAVALY-ITQNHF 280 G +LN++ A + LY I +NH Sbjct: 251 PQVGQADSLNLAVATGITLYEIRRNHL 277 >gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] Length = 175 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N DA+ + + G+ + + E++ DK A+++G E KG++ + + + Sbjct: 85 NAVDAVDNLKNEGYIVYSVEQAEGSIMLDELELDKTRKYAIVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 223 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185 R L ++++ VN PHN+ AILR+ CD G+ S + + +A G+ + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 + N A+ + + GF+ G + +S+ + + +LGAE GL + Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AA++ L+ Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161 >gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 258 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 19/242 (7%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFP 92 N + +H + L G H A L +K+F L T+ AL D + + H F Sbjct: 25 NARKKH----QQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHEDLKEIIELHQGHIFV 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + V + + + LA+ P + T+D ++ ++L+++ DP N+G +LR Sbjct: 80 ISEVLYRDLSTLGTSLPC---LAIIDLPKTASTIDYNVDT---LILENIQDPGNVGTLLR 133 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A + II T+ + S + ++ GA + LTD L K F T Sbjct: 134 SAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFPIPVFVT--- 190 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 SS L + + ILG EG+G + A + + PG ++LNV+ A ++ Sbjct: 191 SSHHSTSLYSQDLSKPCVWILGNEGQGASDYALDHAQCVT-IPQPGGQESLNVAIAGSIC 249 Query: 273 LY 274 + Sbjct: 250 FF 251 >gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] Length = 351 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A + I +L AT L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L A L LD L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ + A + + A G E+I + ++ AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307 >gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414] gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414] Length = 261 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 49/287 (17%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIF 69 + SL++S ++R+ H + K RH Q L G H + A +N P + Sbjct: 2 LTSLQNSLVKQIRKLH---------STKERHKQQL--CLLEGTHLLQEACVVNYPLVTVC 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLD 127 + A L W+A H V+ IV KE + +A P +++ Sbjct: 51 CTPEWQTAHPEL-WEAACSHSDRVE---------IVSKE-ILAAIATTVQPDGVVATAQR 99 Query: 128 AVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 A+ +Q L++ L+ + DP N+G I+R+A A G+ + +S + ++++G Sbjct: 100 AINQTQVPFTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAG 159 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEIKNDKIALIL 233 + +L +Q+ G Q + D +KP ++L Sbjct: 160 QWFRVATAVSQDLKATIQQSQQAGMQVVATLPTANLTYWDVDWRKP---------SLILL 210 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G EG GL P A + + +++LNV+ AAA+ +Y Q Sbjct: 211 GNEGAGLSPDLASMADKQVKIPLSSGVESLNVAIAAALMMYEAQRQI 257 >gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 261 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189 L+++ + P NIGA+LR+A A D + T Y+P+ + +S+ G L +P Sbjct: 115 LILIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDLYNPN----VIRSSVGTLFTVP- 169 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++ + L + F + + P + + A+++G E GL P+ ++ Sbjct: 170 IATASTKEILSFLQKENFTIYCAALSASVPYDSVSYRGRTAIVVGTEDVGLSPQWLSASS 229 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G I ++NVS +AAV ++ Sbjct: 230 KNIIIPMRGKIDSMNVSTSAAVLIF 254 >gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] Length = 231 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + L+ V+ PHN+ AI+R+A A + + S L SA+G+ + Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTSRMRTLVSSAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 ++DA+ + G Q + ++ +E+ + ++LG E G+ + Sbjct: 72 NVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] Length = 280 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 4/183 (2%) Query: 93 VKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 VK Q + K+ K A H L+ + + + S+ ++ L + DP N+GAI+ Sbjct: 88 VKCFSSQVMGKLSDDKSAQHIAAVLKKSFFVQAAANKFDLSENILGLCEIQDPRNLGAIM 147 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + G++ + S + ++++G + + +++ ++ D L ++ Sbjct: 148 RTAAA-TGTGLLLSNDSCDVFSDKVIRTSAGLFDRVGFVQATSREDFLNRLKDRRVFAAA 206 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+ +KN +++G EG+GL AT + M + +LNV AA++ Sbjct: 207 LNEGMIYTNLNGMKN--TCILMGNEGRGLYEDDFNIATDKVFIPMENDVDSLNVGVAASL 264 Query: 272 ALY 274 ++ Sbjct: 265 FMF 267 >gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 255 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 25/184 (13%) Query: 111 HQGL-ALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ A+ P++ P T V + ++LD V + +N+GAI+RSA F I+ Sbjct: 73 HQGVVAMIDTPVILPLNTEITARWVEQKEDAVILDRVGNANNLGAIVRSAAFFGIKNIVI 132 Query: 165 TKRYSPSESAVLAKS---ASGALEHIPYIRISN----LTDALQKMHSWGFQTIGLSSDSK 217 S+S++ S A G +E + + + L D KM +G L + K Sbjct: 133 P--LDESQSSITTSSYRVAEGGMEFVNIYSVRSIPFLLKDMKGKMARFG---TSLKAQKK 187 Query: 218 KPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGI------IKALNVSNAAA 270 + + +K AL +LG E KG+ + + S+ + G+ + +LNV+ AA+ Sbjct: 188 VSEMKLLCQEKPALVVLGNEEKGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAAS 247 Query: 271 VALY 274 V +Y Sbjct: 248 VIMY 251 >gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] Length = 175 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + S G+ + + E+ K K A+++G E KG++ + + + Sbjct: 85 NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLNKTKKYAVVMGNEVKGVQQEVIDHSHG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 279 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 123 LVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + A+Q + G + + L+ E+ + A + G E GL +T+ Sbjct: 179 AVGVPVEQAVQGLRGAGVRILAADGAGTDDLDDELDAGTMGGPTAWVFGNEAWGLPEETR 238 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] Length = 278 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 4/161 (2%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L P + ++D+ +S + L+ + DP N+G+ILRSAVA + + S S Sbjct: 107 MTLVRIPRHTRSVDSYEDS-FCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWS 165 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GA H +RI +D +Q + I + + + Sbjct: 166 PKTLRAGMGA--HFS-LRIHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAF 222 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G EG G+ + E + MPG ++LNV+ AAA+ L+ Sbjct: 223 GNEGCGVSEELLEVVRERVAIPMPGCAESLNVAAAAAICLF 263 >gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali] gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali] Length = 238 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 10/147 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G +LRSA+AF + ++ ++ + + +++ GA+ ++ Y + N Sbjct: 93 VLVLDDIQDPSNLGVLLRSALAFGFNQVLLSENSASFYNEKTIRASQGAIFYL-YFQRGN 151 Query: 195 LTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETA 248 L LQ + ++ L +KK L + N K L+LG EG G+ + Sbjct: 152 LEYLLQNFKNKNYKIFSSLVRKNKKTLSIDQLNKFPEDVKKILVLGNEGAGISHNIE--L 209 Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALY 274 + L++P +++LNVS A ++ ++ Sbjct: 210 ITDYFLNIPTKKVESLNVSVAGSILMH 236 >gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 258 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + D NIG +LR+ A +IT+ + S ++ GA I + Sbjct: 114 LILDGLQDLGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAV 173 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + LQK+ + + T SS + K + IA +LG EG+G+R + A +A L Sbjct: 174 DEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAIPIA-LP 229 Query: 256 MPGIIKALNVSNAAAVALY--ITQNHF 280 PG ++LNV A +V Y + Q H+ Sbjct: 230 QPGGQESLNVGIAGSVCFYEMLRQRHY 256 >gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R] Length = 253 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 21/172 (12%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LAL P ++A+RNS L + LD + DP N+G I+R A F + I SP Sbjct: 83 QQVLALFEQPEYEIDMEAIRNS-LCLALDDIQDPGNLGTIIRLADWFGIEHIFC----SP 137 Query: 171 SESAVL-AKSASGALEHIPYIRI--SNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKN 226 + V K+ + I +++ + L D MHS G G D + EQ + Sbjct: 138 NTVDVFNPKTIQATMGGIARVKVYYTALPDL---MHSLGNVPVYGTLLDGENMYEQPLSK 194 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 + I +I+G EG G+ P+ ++ L++P ++LNV+ A A+ Sbjct: 195 NGI-IIMGNEGNGISPEIEKLVNR--KLYIPNYPAERETSESLNVAIATAIV 243 >gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047] gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116] gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047] gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 351 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 19/202 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96 ++ E + +YG + A I +L AT + L+ L + H V Sbjct: 113 NRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGDVLSYLAENKKAYH-----VV 167 Query: 97 PPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ G E H G+ L +L LD L++LD+VN+ NIG +LR Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRVFMLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLR 226 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + F I+ + A + + A G E+I + ++ AL + G+Q I + Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285 Query: 213 SSDSK-KPLEQEIKNDKIALIL 233 S + + PL++ +K+ +L Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307 >gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] Length = 231 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + LD V+ +NI A++R+A A I + E V +ASG+ + + Sbjct: 16 RQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQIHAV--WPDIEMRVSGNTASGSQQWVKT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 I+ ++ DA Q + Q + + +EI + A+ILG E G+ + A Sbjct: 74 IKHYHMDDAQQAFRAQNMQVLATTFSETAVDFREIDYTRPTAIILGNERDGVSQEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+A+ +Y Q Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQ 164 >gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 243 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 30/242 (12%) Query: 40 SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 S+ Q NLF+ GV V L S + L T N D NLP V + P Sbjct: 15 SKKYRQKYNLFVVEGVKNVKEVLK--SNITVKELYTTNQ--NFDAKGNLP----VHYLSP 66 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + KI ++ LA+ P P L +VLD +NDP N+G I+R A F Sbjct: 67 NELKKISFLSTPNECLAVCEIP---PQRSIAPVKGLTLVLDTINDPGNLGTIIRLADWFG 123 Query: 159 CDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 II +K Y+P +++ S A + Y TD L+ + ++ + +G Sbjct: 124 ITQIICSKESVDVYNP--KVIMSTMGSFARVAVHY------TDILEVIENYKYPILGAFM 175 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---ALNVSNAAAV 271 + + + + + L++G+E G+ ++ T+ + +P I K +LNV+ A ++ Sbjct: 176 EGESIFQFPFPENAM-LVMGSEAHGISKAVEDKITN--KISIPAIGKQTESLNVAMATSI 232 Query: 272 AL 273 + Sbjct: 233 IV 234 >gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 175 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + S G+ + + E+ K K A+++G E KG++ + + + Sbjct: 85 NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQQEVIDHSHG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L++V DP N+G +LRSA A + II T+ + S + ++ GA + L Sbjct: 64 LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQL 123 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 TD L K F T SS L + + ILG EG+G E A S+ + Sbjct: 124 TDILPKFDIPVFVT---SSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVT-IP 179 Query: 256 MPGIIKALNVSNAAAVALY 274 PG ++LNV+ A ++ + Sbjct: 180 QPGGQESLNVAIAGSICFF 198 >gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] Length = 263 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 23/183 (12%) Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 VG EA+ + +L A + +D + + L +VL+ V DP N G ILRSA A Sbjct: 79 VGNEALSKITSLTDADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGV 138 Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212 I+ + S + ++ GA L + +S + Q W G + IGL Sbjct: 139 RQIVCSNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMETYQH-QIWATALGGRNIGL 197 Query: 213 -SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D +P A + G EG G+ +E A + + M G ++LNV+ AA V Sbjct: 198 YEMDLSQP---------CAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATV 248 Query: 272 ALY 274 L+ Sbjct: 249 CLF 251 >gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1] gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1] Length = 288 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 125 KLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 180 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A++ + + G + + + L+ E+ + A + G E GL +T Sbjct: 181 VAVGVPVEQAVEGLRAAGVRILAADGAGEDDLDAELDAGTMGTPSAWVFGNEAWGLPEET 240 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 241 RALADAVVRVPIHGKAESLNLATAAAVCLY 270 >gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173 Query: 192 --ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I++ DA +++ L S K L K ++ALI+G E G+ A Sbjct: 174 DVITDFQDATIPVYA------SLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LN + AA + +Y HFA Sbjct: 228 EKLYIPIKGQAESLNAAVAAGIMIY----HFA 255 >gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C] gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C] Length = 287 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 124 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A++ + + G + + + L+ E+ + A + G E GL +T Sbjct: 180 VAVGVPVEQAVEGLRAAGVRILAADGAGQDDLDAELDAGTMGGPSAWVFGNEAWGLPEET 239 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 240 RALADAVVRVPIHGKAESLNLATAAAVCLY 269 >gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPKSADLYNSKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + D + K L K ++ALI+G E G+ + ++ Sbjct: 173 ADVITDFQDAAIPVYASMLDKTAKQLPDFEKVSQLALIIGNEAHGVSSTIASLSDEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 + G ++LN + AA + +Y HFA Sbjct: 233 PIKGKAESLNAAVAAGIMIY----HFA 255 >gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN] gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae] gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] Length = 259 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++ +++P N G ++R A A +I + +S++G++ I + Sbjct: 108 QLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYTVDPYNGKCLRSSAGSIFSITVVVA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATS 250 S+ A+ ++ + G Q + D + L++ + A + G+E GL + E A Sbjct: 168 SDAYAAVTELRAAGLQVLATMVDGETSLDEAKPLLGKPTAWLFGSEPHGLSTEIAEAADY 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +++LNV+ AA+ LY Sbjct: 228 RVRIPMVGGVESLNVAATAAICLY 251 >gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 279 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 122 KLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + S G + + + L+ E+ + A + G E GL +T Sbjct: 178 VAVGVPVEQAVAGLKSAGVRILAADGAGEDDLDAELDAGTMGGPTAWVFGNEAWGLPEET 237 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 238 RALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii] gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii] Length = 148 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 11/142 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--RI 192 L+VLD V DP N+G ++RSA+AF G+ + +++ GA+ +P ++ Sbjct: 13 LLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRGAVLRLPVAAGQL 72 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L +A +++ + +AL+LG+EG+GL + + +A Sbjct: 73 RELQEAAEELG---------LLLLSSSGSGSGCSGGVALVLGSEGQGLSGAVRALCSPVA 123 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 PG +++LNV A ++ ++ Sbjct: 124 VPMTPGAMESLNVGVAGSLLMF 145 >gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1] Length = 1541 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRI 192 L++ VN P+N+G + R+ F+ D ++ R S+ +S H ++ Sbjct: 1386 LIVAASFVNIPYNLGGLTRTCEIFNADRLVMPDNRVLQSKEYKGVSVSSERWMHFDIVKP 1445 Query: 193 SN-LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L + L + G+ +GL ++ PL++ ++ L+LG E +G+ PK Sbjct: 1446 EDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGISPKVLAVIDR 1505 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G+ ++LNV +AA+A+Y Sbjct: 1506 CVEIPQFGVTRSLNVHVSAAIAIY 1529 >gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 237 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179 P +DA R S+LL + V DP N G ++R A A DG++ + Y+P ++ Sbjct: 78 PVVDA-RVSRLLAICADVRDPGNAGTVIRCADAVGGDGVVLAGNSVDPYNPKT----VRA 132 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----QEIKNDKIALILGA 235 + G+L H+ + + A+ S GF L++D ++ E+ A + G Sbjct: 133 SVGSLFHVRIGQERHPATAVSHARSAGFTV--LAADGAGDVDLFDADELLAGPSAWLFGN 190 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E GL + A + + G ++LN+S AAA+ LY + Sbjct: 191 EAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLYAS 231 >gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 216 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++VLD++ HNIG++ R++ AF + I + + K+A GA + + Sbjct: 61 RKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDW 120 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQE 246 ++N +A+ + G+ + + E+ K K A+++G E KG++ + + Sbjct: 121 KYVNNSVEAVDNLKKEGYVVYSVEQAEGSIMLDELTLDKTKKYAIVMGNEVKGVQQEVID 180 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LNVS A + ++ Sbjct: 181 HSHGCIEIPQYGTKHSLNVSVTAGIVIW 208 >gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a] gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a] Length = 299 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 43/232 (18%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A+LP PV + I G E VH+G ++ P L+P D + ++ ++V + + Sbjct: 66 ADLPADVPVYVAGADVLAAITGFE-VHRGALASMCRRPPLAPA-DVLAAARRVLVCEDIV 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 N+GAI RSA D ++ + R + + + G + +PY R+ AL + Sbjct: 124 SHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLL 183 Query: 203 HSWGFQTIGLS-----SDSKKPLEQEIKND------------------------------ 227 GF + L+ +D + Q D Sbjct: 184 RDAGFTLLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAA 243 Query: 228 ----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++AL+LG EG GL TQ AT+ A + M + +LNV+ AA+A Y+ Sbjct: 244 GAPARVALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACYL 295 >gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 8/250 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ +K+++ + SR + L G H ++A L + A ARL Sbjct: 9 RDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAARLAAV 68 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 A+ V V P + + A G+ E A L T A + L++VL+ + DP Sbjct: 69 ADCRQAKTV--VVPDALFAELAPVATPTGVLAEAAWL---TPQAPVDLALVVVLEDIQDP 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA+LR+A A + +K + S + GA +P + D + Sbjct: 124 GNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLP---MQLAADPGSWLRD 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ L+ ++ L AL++G EG GL T AT+ A + MPG +++LN Sbjct: 181 FSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN 240 Query: 265 VSNAAAVALY 274 S A AVA++ Sbjct: 241 ASAALAVAVF 250 >gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406] gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406] Length = 176 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + + +++VLD+V HN+G+ R+A AF + I + + K+A GA Sbjct: 16 TFKKTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLR 241 E + + L K+ + G+Q + + K Q+ K +K LI G E G+ Sbjct: 76 ESVEWEHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIFGNEVYGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + G + NVS + L+ Sbjct: 136 EEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLW 168 >gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] Length = 263 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V +++P N G ++R A A G++ + ++++G++ +P Sbjct: 108 RLIAVAVQISEPGNAGTLIRLADAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVAAA 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 +L +A+ + G Q + + D + L++ E+ A + G E GL A Sbjct: 168 PDLREAVAAVREAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSAVAAAADH 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AAA+ LY Sbjct: 228 RVCIPMAGGAESLNVASAAAICLY 251 >gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 255 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 32/267 (11%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDAN 86 M +KS S+ L G +VS AL + +L AT AL AR A+ Sbjct: 1 MAKLAKKSAR-SETGLFLLEGPQSVSEALQYRPELLVELYATPTALERHTEIARSAEAAD 59 Query: 87 LPHPFPVKTVPPQTIDKIV--GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + F + V D + G AV + LL+ +L+ +L+ V DP Sbjct: 60 IEVEFVSEQVLEAMADTVTPQGVIAVCRQFPTSVKDLLAGA------PKLIAILEEVRDP 113 Query: 145 HNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 N G I+R+A A DG+I T R Y+P + ++ +G+L H+P +L L+ Sbjct: 114 GNAGTIIRAADAAGADGVILTGRSVDLYNPK----VVRATTGSLFHLPVAVGVDLEPVLE 169 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETATSMAHLH 255 ++ + I ++D K +ND + A + G E +GL + A + + Sbjct: 170 RVKGADLRVI--AADIKGGDLLAARNDGVLDHPTAWLFGNEARGLTDEHYALADWVISVP 227 Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282 + G +++N++ AA+V LY ++ FA+ Sbjct: 228 IYGHAESMNLATAASVCLY--ESAFAQ 252 >gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 176 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD++ HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 26 LTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + + G+ + + E+ K+ K A+++G E KG++ + + + Sbjct: 86 NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIVMGNEVKGVQQEVIDHSHG 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169 >gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] Length = 255 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173 Query: 192 --ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I++ DA +++ L S K L K ++ALI+G E G+ A Sbjct: 174 NVITDFQDAAIPVYA------SLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LN + AA + +Y HFA Sbjct: 228 EKLYIPIKGQAESLNAAVAAGIMIY----HFA 255 >gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+] gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+] Length = 680 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 74/296 (25%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-------KTVPPQTID 102 FLYG +V AAL + RK+++L + R +A+ V K+VP + + Sbjct: 351 FLYGSSSVEAALRSGRRKLYKLYIQQGDDVRESQNADDIKAEKVIRTLAKQKSVPVEVVS 410 Query: 103 KIVGKEAV--------HQGLALETAPLLSPTLDAV------------------------- 129 G + H G LE + L P + A+ Sbjct: 411 GKYGMRLMSKMSSSRPHNGFVLEASALPQPPIVALGAIPEDPAEYAAKPGFSVELGHQSA 470 Query: 130 --------------RNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 R S L++VLD + DP N+GAILRS F + T Sbjct: 471 EDVAINGTNDFVYWRKSATHKPLVVVLDRILDPVNLGAILRSVGFFGAAAVAITNYGGTK 530 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------- 223 + V K+++GA E + I++L + L + G++ + Q Sbjct: 531 ITPVALKASAGAAEEVTIFGINSLPEFLNASRANGWEVYAAVAQEPGATRQRRQVDLFDI 590 Query: 224 -----IKNDKIALILGAEGKGLRP---KTQETATSMAHLHMPGIIKALNVSNAAAV 271 +K L+LG+EG+GL K + ++ + ++ +LNV+ A A+ Sbjct: 591 EKTDPLKRTPCVLLLGSEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGAL 646 >gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 235 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L++V+ PHN+ AI+R+ CD + + ++ E + + A+ + Sbjct: 16 RQTDLTVCLENVHKPHNVSAIVRT-----CDAVGIHRVHTVWEKKYQFRRGT-AMGSQQW 69 Query: 190 IRISN---LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +R +N + DA+ ++ G Q + SD+ A++ G E G + + Sbjct: 70 VRQTNHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDVDYTKPTAILFGQEKYGATDEAK 129 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS AAA+ LY Q Sbjct: 130 ALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQ 163 >gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 267 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 70/155 (45%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P LS L A+ ++ VL +V DP N G ++R A A D ++ + S + +S Sbjct: 103 PTLSAALGALPRDAVVCVLTNVRDPGNAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRS 162 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+L H+P + + L + + G + + L + A ++G E G Sbjct: 163 TVGSLWHLPIVTGVPVPVILDALRARGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWG 222 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + ++ + + + G ++LN++ AA + LY Sbjct: 223 LDAEVRDACDEVVRVPIHGRAESLNLAMAAMLCLY 257 >gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1] Length = 277 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 114 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + ++ L+ E+ + A I G E GL T Sbjct: 170 VAVGVPVERAVSGLREAGARVVAADGAGERDLDTELDEGVLGAPTAWIFGNEAWGLPEPT 229 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + + + G ++LN++ AAAV LY Sbjct: 230 RALADEVVRVPIHGRAESLNLATAAAVCLY 259 >gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 178 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 28 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAEFTVDWKYVD 87 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N +A+ + + G+ + + E+ D K A+++G E KG++ + + + Sbjct: 88 NAVEAVDNLRNGGYTVYSVEQAEGSIMLNELTLDRTGKYAIVMGNEVKGVQQEVIDHSHG 147 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 148 CIEIPQYGTKHSLNVSVTAGIVIW 171 >gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 275 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 6/198 (3%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDH 140 A P P+ D I G +H+G LAL + AP + + S L++ Sbjct: 75 AQFPPDVPLYVATSAVFDAIAGFN-MHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACG 133 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 +++ N+G++ R+A AF D ++ + + G++ +P+ R + + Sbjct: 134 ISNHDNMGSLFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTLPFAREGGAAELIG 193 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ + F GLS + + AL++G EG+GL P+ + A + + Sbjct: 194 RLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGL-PEAILSQIHTARIRQRPGL 252 Query: 261 KALNVSNAAAVALYITQN 278 +LNV+ AA +AL+ N Sbjct: 253 DSLNVAMAAGIALHQVAN 270 >gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 210 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 126 LDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L+AV R L + ++++ NIG+I+R+A A + R + + Sbjct: 56 LNAVKERGKWLEVAIENLGHDFNIGSIVRTANAMGVRHVHIVGRRRWNRRGAMVTDRYMQ 115 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRP 242 + H P + + A+Q+ G + +G+ + + PLE+ + +++G E GL P Sbjct: 116 VHHHP--DVESFQAAMQEA---GMRIVGVDNIERSVPLEETVLPLNCVMVMGEESTGLSP 170 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + H+ G +++NV +AAA++++ Sbjct: 171 EMAAISEEIVHITQYGSTRSMNVGHAAAISMW 202 >gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] Length = 178 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 10/158 (6%) Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++D R S+ L++VLD++ +NIG+ R+A AF + I+ + +SA Sbjct: 13 SVDEFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSAL 72 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGK 238 GA + + + + DA+ + S G+ + L Q+ + D A + G E + Sbjct: 73 GAEMAVAWEKNPSAVDAVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAFVFGNEVE 132 Query: 239 GLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 G+ + A S L +P G + NVS +A + L+ Sbjct: 133 GVADEV--IAASDGCLEIPQFGTKHSFNVSVSAGIVLW 168 >gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 19/165 (11%) Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169 P +DAV R L +V++ DP N+ A+LR+ AF G+ T K Y Sbjct: 11 PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GVQTLHAIEGPMKPYD 67 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 ++ K + A + + R S+ + L + S GF + P+ K Sbjct: 68 RNK-----KISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGK 122 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL+ G E +G+ + A + + M G +++LNVS AAA++L Sbjct: 123 VALVFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167 >gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] Length = 259 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 6/181 (3%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + IVG + H + T P +L+A+ ++ +++LD + N+G+I RSA Sbjct: 77 VDKDEMQNIVGHKIHHNCMMHGTRPD-ETSLEALGDN--ILMLDAITSTENVGSIARSAA 133 Query: 156 AFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D + R SP A S G + + +++ +Q++ G++ Sbjct: 134 ALGVDSYLLP-RQSPHPYGRRALRVSMGYVSKLKVHIYEDISQTIQELKKDGYRIYAAEV 192 Query: 215 DSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L ++K+ K L++G EGKG+ + + + + M +K+ NVS AA++ + Sbjct: 193 TPDATLLSQVKSPQKWVLLMGHEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMM 252 Query: 274 Y 274 Y Sbjct: 253 Y 253 >gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] Length = 219 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V HNIG+I R+ F+ + + + K+A GA + + + Sbjct: 68 LVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDWKHYE 127 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 + +A++ + G+ I + S + K + K ALI G E G+ + E Sbjct: 128 STLEAVKALREEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGVSDEVMEVIDE 187 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G + N+ +A + L+ + FAK Sbjct: 188 CIEIPQFGTKHSFNIVISAGIVLW---DFFAK 216 >gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] Length = 175 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N DA+ + G+ + + E++ D K A+++G E KG++ + + Sbjct: 85 NAVDAVDNLRKAGYMVYSVEQAEGSIMLDELELDKSKKYAIVMGNEVKGVQQEVINHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] Length = 175 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N DA+ + + G+ + + E++ DK A+++G E KG++ + + Sbjct: 85 NAVDAVDNLKNEGYIVYSVEQAEGSIMFDELQLDKTKKYAIVMGNEVKGVQQEVINHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22] gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22] Length = 175 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N DA+ + + G+ + + E++ DK A+++G E KG++ + + Sbjct: 85 NAVDAVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQQEVINHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 296 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +QL++VL V DP N G I+R A A D ++ T + +S +G+L H+P Sbjct: 138 KEAQLIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIYNDKTVRSTAGSLFHVPV 197 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-----PLEQEIK-NDKIALILGAEGKGLRPK 243 + L + + + G Q + ++ + P + + + + G E G+R + Sbjct: 198 VTGVGLAEVTELARARGLQILAADANDQSHDIHHPWDSGLDLTARTTWVFGNEAWGMRTE 257 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E S A + + G ++LN++ AA+V +Y Sbjct: 258 DLELCDSSAAVPIYGKAESLNLATAASVCIY 288 >gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] Length = 260 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 4/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++L+ + DP N+G++LRSA A + + + + + S + GA +P + + Sbjct: 114 FLLMLEDIQDPGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQFILPIVERA 173 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + + QT+ + + E +++ A ++G EG GL + A+ Sbjct: 174 DLENV---TRGFAGQTLATTLMGESLYEMDLQ-PPTAFMIGNEGTGLSETLIKAASRQVS 229 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +++LN + A A+ L+ Sbjct: 230 IPMAGQVESLNAAAATAICLF 250 >gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51] gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51] Length = 647 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 23/170 (13%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P LSPT + L+++LD + DP N+GAILR+A + T+ S + V K+ Sbjct: 449 PTLSPT-----HKPLVLILDQILDPGNLGAILRTASFLGATAVGITRHGSAPLTPVALKA 503 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI-----GLSSDSKKPLEQEI---------K 225 +SGA E + +S+L + L + G+ G SS+ ++ ++ K Sbjct: 504 SSGAAESLSLFSVSSLPEFLNASRANGWAVYAAVAEGPSSERRQRRHVDVRDVTETDPLK 563 Query: 226 NDKIALILGAEGKGLRP---KTQETATSMAHLHMPGI-IKALNVSNAAAV 271 + L++G EG+GL K + ++ +L MPG + +LNVS A + Sbjct: 564 REPCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGL 613 >gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] Length = 229 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186 R + L +V+D+VN PHN+ AI+R SCD + + ++ S S++ K +A+GA Sbjct: 30 RQTDLTLVMDNVNKPHNLAAIIR-----SCDAVGIHQVHAISYRSSIKTKQHTAAGASRW 84 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + + +K+ G Q + + + I + A+++G E KG + Sbjct: 85 LKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKGPSQEAL 144 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + ++ M G++++LNVS AAA+ L+ Q Sbjct: 145 GLADNFIYIPMMGMVESLNVSVAAALILFEAQRQ 178 >gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 180 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L ++ +N+G++ R+A A D +I T + + K+A GA E + + ++ Sbjct: 31 VLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDWEYYTHP 90 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253 + L + G GL +++ +P K+D + LILG E G+ + + Sbjct: 91 EEILGVLKDSGVTICGLEITENSRPYTDIKKDDFPLCLILGNEVDGIDDDVLQFCDHVFE 150 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G +LNVS AA VALY Sbjct: 151 IPQYGTKHSLNVSVAAGVALY 171 >gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 253 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 23/248 (9%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++ KK+ S ++K+R + L G + A + + K+ +LL +K+A +L Sbjct: 13 KEIKKLLS-SKKARD--EKGQFVLEGPKAIEAYVQS-GGKVLELLYSKDA-------KDL 61 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P V T + + V A QG+ + A T V + ++VL+ + DP N+ Sbjct: 62 PKVNAVVTQCAPGVMEAVSDVAGDQGV-IAIAQKRDWTPQQVLKRKRIVVLEQLQDPGNL 120 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A AF I+TT V+ A L Y+ + + + Sbjct: 121 GTILRTAAAFDYGVILTTGSADVYNPKVVRALAGNFLAPFVYVTGGEALELCKNLF---- 176 Query: 208 QTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + S+KP + K A++LG EG+GL + A A+ +P +++LNVS Sbjct: 177 -VVTTYKSSEKP---DFKWRQPFAIVLGNEGQGLTESWRRIAK--ANAWIPSKVESLNVS 230 Query: 267 NAAAVALY 274 +A+ ++ Sbjct: 231 VTSAILMW 238 >gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] Length = 256 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 16/156 (10%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179 PT +A +QL++ LD V DP N+G I+R A F I+ T Y+P + A Sbjct: 98 PTTEATPQNQLILALDGVQDPGNLGTIIRIADWFGIKNIVCSEDTVDVYNP--KVIQASM 155 Query: 180 ASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S A + Y + N + + K+ + G D + Q + + I +++G EGK Sbjct: 156 GSVAQVSVNYCDLKNFIENIAPKVPVY-----GTCLDGENIYNQTLSSKGI-IVMGNEGK 209 Query: 239 GLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271 G+ ++ T + + H I +LNV+ A A+ Sbjct: 210 GVSTAIKQLFTHKLLIPNYHPQSAIDSLNVAIATAI 245 >gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311] gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311] Length = 261 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/256 (20%), Positives = 105/256 (41%), Gaps = 12/256 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++++K+Q + ++ + + G H V A+N LL +K + +W L Sbjct: 13 KEWRKLQ----QKKYRQDQKKYIVEGFHLVEEAINTNQSIESILLTSKGKMEWEEW--LL 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + + + + K QG+ A + + ++LD++ DP N+ Sbjct: 67 DKDFSQIIIVSEEVMHYLSKLPTPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQDPGNV 126 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A G+I + + S +S G+ H+ + S L L + Sbjct: 127 GTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSILHAS-LPAVLSQFQEKEI 185 Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + ++K L++G EG+G+ + H+ M G ++LNV+ Sbjct: 186 PVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASESLNVA 245 Query: 267 NAAAVALYITQNHFAK 282 AA + ++ HF + Sbjct: 246 VAAGILIF----HFEQ 257 >gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 281 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL +V DP N G +LR A A D +I T Y+P +++ G+L H+P Sbjct: 123 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLFHLPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + A+Q + G + + L+ E+ + A I G E GL +T+ Sbjct: 179 AVGVPVDQAVQGLRDAGVRILAADGAGADDLDDELDAGTMGTPTAWIFGNEAWGLPEETR 238 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + H + L G H +A L+ + +AT+ ALA + Sbjct: 7 RDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPEL-CVATEGALAHAEAQ 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + + V P + + G L + P + V ++ +VLD V D Sbjct: 66 AIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVLDGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHI-----PYIRISNLT 196 N+G+ILRSA A + + + S+ + +S GA L I P + L Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARLD 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + S G Q + D P +A + G EG G+ ++ AT + Sbjct: 184 VPVALTDSHGAQAV-FDCDLAGP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 269 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 111/258 (43%), Gaps = 12/258 (4%) Query: 26 NHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKI--FQLLATKNALARLD 82 N D ++ +F + K R + LF+ V L + + + +L + L +L Sbjct: 7 NDPDDPRIAAFRDVKERDLTGRHGLFIAEGEVVLRVLASEASRCTPVSILIAEKRLEKL- 65 Query: 83 WDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPL-LSPT--LDAVRNSQLLM 136 W+ LP V ++ + G + +H+G LAL P + P LD++ + + Sbjct: 66 WEVLERLPGDVTVHMASQAVLNAVAGFD-LHRGVLALGRKPEPVEPGALLDSLPERAVAV 124 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V + + N+G + R+A AF ++ + + + GA+ P Sbjct: 125 VACGIGNHDNMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMAMGLEAE 184 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + GF+ + L+ +++ L + + AL+LG+EG GL P+ + M Sbjct: 185 AMIDLLQGRGFEVLALTPSAEQTLAELKPGRRTALLLGSEGPGL-PRDIIARCRPVGIRM 243 Query: 257 PGIIKALNVSNAAAVALY 274 G +LNV+ +AVAL+ Sbjct: 244 AGGFDSLNVAATSAVALH 261 >gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 175 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ HNIG++ R++ AF + I + + K+A GA + + + Sbjct: 25 LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTALGAEFTVDWKYVD 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + S G+ + + E+ K K A+++G E KG++ + + + Sbjct: 85 NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQQEVIDHSHG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168 >gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 264 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGA 149 +P+ + +K+ + + LAL LS L + + LL++ + P NIGA Sbjct: 71 YPLTEISLPVYEKLSYRSSTEGILALAQGKDLSLSALSFNKENPLLLIAEAPEKPGNIGA 130 Query: 150 ILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 +LR+A A D + T Y+P+ + +S+ G L +P I ++ + L + Sbjct: 131 LLRTADAAGVDAVCIANPKTDMYNPN----VIRSSVGTLFTVP-IATASTEELLHFLAQE 185 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 F + + P + + A+ +G E GL P E ++ + M G I ++NV Sbjct: 186 DFTLYCAALSASVPYDSVSYKGRTAIAVGTEDVGLSPLWLEASSQNIIIPMRGKIDSMNV 245 Query: 266 SNAAAVALY--ITQNH 279 S +AAV ++ + Q H Sbjct: 246 SVSAAVLIFEAVRQRH 261 >gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA R+A AF D ++ P + SA AL P+ R+ + D L+ + Sbjct: 136 NVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQ-PFARLPDGQDWLRLAET 194 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + S + + L+ + LILG EG GL T A + + M +LN Sbjct: 195 LDLRPLAFSPGASETLDARAAPPRALLILGTEGPGLDAATLARARPI-RIPMAAGFDSLN 253 Query: 265 VSNAAAVALY 274 V+ AA +ALY Sbjct: 254 VATAAGIALY 263 >gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10] gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua] gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516] gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F] gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1] gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92] gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10] gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 230 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183 A R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ +A + S Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSAAAGSNSWVQV 73 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242 H P+I DA+ + S Q + K +EI + +++G E G+ P Sbjct: 74 KTH-PHI-----ADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISP 127 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS A+A+ LY Q Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010] gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010] Length = 289 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 19/148 (12%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N G ++R+A A CD ++ + + ++ +G+L HIP +T + Sbjct: 135 QVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189 Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245 + W +T+ +D ++P E Q++ A+I G E +GL P Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 249 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 230 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHN+ A++R+A A + + S L SA+G+ + Sbjct: 15 CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVHAI--WPTSRMKTLVSSAAGSNSWVQ 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 N+ DA+ + + G Q + +EI + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] Length = 181 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 9/154 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF + + + + K+A G + + + Sbjct: 25 LVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGEDSVDWKYFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQETA 248 + DA++ +HS G+ + Q +++ A+I+G E KG++ + + Sbjct: 85 HTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLDTTQHYAIIMGNEVKGVKQSVVDLS 144 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS A + ++ FAK Sbjct: 145 DNCLEIPQFGTKHSLNVSTTAGIVIW----EFAK 174 >gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] Length = 191 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 17/158 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HN+G++ RSA AF + + + +A + K+A G + + + Sbjct: 25 LIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTALGGEDSVDWRYFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------------IALILGAE 236 DA++++H G + QE+ + A++LG E Sbjct: 85 RTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNHQHPTPNTQHPVIHYAIVLGNE 144 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG++ + + + G +LNVS + ++ Sbjct: 145 VKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIW 182 >gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG] gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG] Length = 371 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + + ++ G E H G+ L L LD L++LD+VN+ NIG +L Sbjct: 187 VDSEELARVSGTEH-HGGICLLVKKPRVFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVL 245 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F I+ SA + A G E+I + ++ AL + G+Q I Sbjct: 246 RTCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIH 304 Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233 +S + + PL++ +K+ +L Sbjct: 305 VSHNKQGDPLDKVRLKNKVVFVL 327 >gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 271 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A++T P+L Q ++LD + DP N+G+ILRSA A + + + + S Sbjct: 106 AVQTCPVLR---------QTAVLLDRIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSP 156 Query: 175 VLAKSASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ GA LE + + + ++ +A + I + ++ + +A Sbjct: 157 RVLRAGMGAHFLLEIVENVVLEDVMEASE------IPVIATTPYTETTIYDCDLRLPVAW 210 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 +LG EGKG+R + A+ + G +++LNV+ AAV + + QN Sbjct: 211 LLGHEGKGIRESLLDKASDRVVVPHQGAMESLNVAACAAVCFFEQVRQNRVC 262 >gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 258 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 2/142 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ L+ V DP N+G I+R+A A G+ + +S + ++++G + Sbjct: 111 LVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAMSVTE 170 Query: 194 NLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL +Q+ G Q + L S + + + + + ++LG EG GL A Sbjct: 171 NLKATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSL-ILLGNEGAGLSADLAAIADKQV 229 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + +++LNV+ AAA+ LY Sbjct: 230 RIPLSPGVESLNVAIAAALMLY 251 >gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1] gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] Length = 255 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A S DG+I + + ++ + +S G+ H+ ++ +++ Sbjct: 114 VILDNLTDPGNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 172 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 L + G D + K ++ LI+G E G+ + Q ++ Sbjct: 173 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252 >gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 245 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + ++++ V+DPHN A+LR+A AF + + T R S + ++ + A + + Sbjct: 50 RTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRYAD---QWLT 106 Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R ++ A+ + G+Q + PL + + L+ G E G+ + Sbjct: 107 LHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNVSKPTVLLFGNEHSGVSEEALRL 166 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S AAA+ LY Sbjct: 167 ADGTFVIPMYGFVQSFNISVAAALTLY 193 >gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1] gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1] gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846] Length = 351 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + + ++ G E H G+ L A L LD L++LD+VN+ NIG +L Sbjct: 167 VDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVL 225 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F I+ + A + + A G E+I + ++ AL + G+Q I Sbjct: 226 RTCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIH 284 Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233 +S + + PL++ +K+ +L Sbjct: 285 VSHNKQGDPLDKVRLKNKVVFVL 307 >gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 216 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 9/148 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGAL--E 185 R+ LL +L+ V D NI A+ R+ A+ C I+++K S S +++ GAL + Sbjct: 42 RSFSLLPILEGVYDVGNILAVCRTTEALGIGCASIVSSKGLSFKASG---RTSGGALKWQ 98 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+ S AL+ + G++ + D +PL A++ G E +G+ + + Sbjct: 99 HVEQFETSE--RALRVAKAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEAR 156 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G ++LN+S AAA+ + Sbjct: 157 ALRDGAVYIPMFGFTESLNISVAAALVM 184 >gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 296 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL +V DP N G +LR A A D +I T Y+P +++ G+L H+P Sbjct: 138 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLFHLPV 193 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245 + A+Q + G + + L+ E+ + A I G E GL +T+ Sbjct: 194 AVGVPVDQAVQGLRDAGVRILAADGAGADDLDDELDAGTMGTPTAWIFGNEAWGLPEETR 253 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + G ++LN++ AAAV LY Sbjct: 254 ALADAVVRVPIHGKAESLNLATAAAVCLY 282 >gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 261 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ +L+ +++P N G ++R A A +I + ++++G++ +IP Sbjct: 105 RSPRLIATAVEISEPGNAGTLIRIADAMGAAAVILAGHSVDPYNGKCLRASAGSIFNIPV 164 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQET 247 + +++ A+ + G Q + + D + L+ + A + G E GL + Sbjct: 165 VAVADTHAAIVSLRGAGLQVLATAVDGETSLDDADPLLGVATAWLFGPESHGLSAEIAGA 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++LN++ AAA+ LY Sbjct: 225 ADHRVRIPMSGRAESLNIAAAAAICLY 251 >gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004] gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038] gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] Length = 219 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 11/156 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183 A R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ +A + S Sbjct: 3 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSAAAGSNSWVQV 62 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242 H P+I DA+ + S Q + K +EI + +++G E G+ P Sbjct: 63 KTH-PHI-----ADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISP 116 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + M G++++LNVS A+A+ LY Q Sbjct: 117 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQR 152 >gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 18/150 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD ++DP N+G +LRS A +I + +SA GA +P + ++N Sbjct: 25 LILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGASFRVPVLELTNA 84 Query: 196 TD---ALQKMHSWG-FQTIGL---SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--- 245 D AL + S FQ + DSK A+ILG EG+GLR + + Sbjct: 85 DDKDGALDQKKSLAHFQVDWIRHTKDDSK-------SGGGSAIILGREGEGLRREVRAAI 137 Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + S H+ M +++LN + +V ++ Sbjct: 138 KQGSISTVHIPMADGVESLNAAVCGSVIMF 167 >gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] Length = 231 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A GI P E V +ASG+ + + Sbjct: 16 RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHQIHAVWPDIEMRVSGNTASGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 I+ ++ DA + G Q + + + +EI + A+ILG E G+ + Sbjct: 73 TIKHYHMHDAEAAFRAQGMQILATNFSKEAVDFREIDYTRPTAIILGNEHDGVSAEGIAA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ +Y Q Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQ 162 >gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 271 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 21/258 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++ +++ N R + +++ G H AAL R +LA A L W Sbjct: 18 KELRRLAQDNTAYRKSGTAGRVWVEGDHLARAALLRGWRPALAVLAES---AWLHWGGEF 74 Query: 88 ---PHPFPVKTV--PPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQL-LMVLD 139 H +TV P I E+ QGL L + ++A S L +VLD Sbjct: 75 GDASHTGAERTVLLPDALFASISALESFSPAQGLGL----VFDLPVEATVQSGLSTVVLD 130 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198 V D N+G+ILRSA AF C ++ K + S + ++ GA H + L D Sbjct: 131 RVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGA--HFGLRLVEGLAADD 188 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + + SS + L + A +LG EG+G+ A + PG Sbjct: 189 LAVLQ---VPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEALMARAALKLRIAQPG 245 Query: 259 IIKALNVSNAAAVALYIT 276 ++LNV+ AAA+ L+ + Sbjct: 246 GEESLNVAAAAAICLHAS 263 >gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] Length = 263 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 19/181 (10%) Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 VG EA+ + +L A + +D + + L +VL+ V DP N G ILRSA A Sbjct: 79 VGNEALSKITSLTDADDVMTWIDIPKQAGLPSDDDCVVLERVQDPGNAGTILRSAAAAGV 138 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS--W----GFQTIGLS 213 I+ + S + ++ GA + L+ ++K W G + IGL Sbjct: 139 KQIVCSNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMEKYQHPIWATALGGRNIGLY 198 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L Q A + G EG G+ + +E A + + M G ++LNV+ AA V L Sbjct: 199 ---EMNLSQ-----SCAWVFGNEGSGVSERIKEKAEACVKIPMLGQTESLNVAMAATVCL 250 Query: 274 Y 274 + Sbjct: 251 F 251 >gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 265 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSAVAFSC 159 +D+++G L+ E L P R S + V L+ + P+N+GAI RSA AF Sbjct: 89 LDELLGTWTADWDLSPEPRGELPP-----RTSLPIWVYLEDLRSPYNVGAIFRSAEAFGA 143 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI + + A++A G +P+ R+ A ++ S G I L + P Sbjct: 144 SGIYLSPATPTPDHPRAARTARGTQHLLPWRRL-----APDQVGSLGLPVIVLETRG-TP 197 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP--GIIKALNVSNAAAVAL 273 +++ ++ +++G E G+ P+ A +S + +P G +LNVS AA + L Sbjct: 198 VDEYTFPEQGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254 >gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str. 870] gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str. Tulya] gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str. C68] gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 297 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N I LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 287 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + LD V DP N+G I+R+A A G+I TT +SP ++ G++ +P R Sbjct: 133 VALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET----VRATMGSIFSVPLYR 188 Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246 +W F+ + + + K ++ + KN + L++G E +GL Sbjct: 189 FDE-----SAFLNWSTHFKGMIVGTHLKGSIDYRTIDFKNGPVILLMGNEKQGLPDILAN 243 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A A+ LY Sbjct: 244 CCDKLARIPQSGRADSLNLAVATAIMLY 271 >gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815] gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815] Length = 266 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------ 183 R + +VLD V D N+G+ILRSA A + + + S+ + +SA GA Sbjct: 110 RVTHGCVVLDGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQI 169 Query: 184 ---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +E I++ ++ A+ H G + I +D P +A + G EG G+ Sbjct: 170 HEDIEAPTLIQLLDVPVAITDSH--GAEAI-YETDLSGP---------VAWVFGNEGAGV 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ T + PG +++LNV+ AAAV L+ Sbjct: 218 SQPWRDAVTYRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] Length = 231 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186 A R L + L+ V+ PHN+ AI+R+A A G+ P+ L SA+G+ Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GVHQVHAVWPTPRMRTLVSSAAGSNSW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + + DA+ + G Q + + ++ +E+ + ++LG E G+ + Sbjct: 71 VNVKTHPTIVDAVTHLKDQGMQILATNLSARAVDFREVDYTRPTCVLLGQEKTGITEEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 131 RLADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 294 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N+ + + LD V DP N+G ++R+A A GII + S ++ G++ +P Sbjct: 135 KNNDVYIALDRVRDPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPL 194 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEI---KNDKIALILGAEGKGLRPKT 244 +++ D L +W GL + K ++ N + L++G E +GL Sbjct: 195 YKVTE-ADFL----NWRKDISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSL 249 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T +A + G +LN++ A V LY Sbjct: 250 ADTCDKLARIPQAGRADSLNLAIATGVMLY 279 >gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 297 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N I LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIPY 189 +S +++LD NDP N+G ++RSA AF +I P + V K+ ++ I Sbjct: 97 SSSKILLLDGTNDPGNLGTMIRSAEAFGFKDVILM----PGTADVYNEKTLRASMGSIFR 152 Query: 190 IRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I N T D ++K+ S ++ + D + K+ KI + +G E GL + +E Sbjct: 153 LNILNKTYDDIKKLKSC-YRILSADMDG-LDIRNYKKDSKIIIAIGNEANGLSQEMREIT 210 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G I++LN + AA++ + Sbjct: 211 DEFIKIPMEGEIESLNAAIAASIIM 235 >gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi] gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi] Length = 218 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L VL+ + P N A +R+ + FS D I +KR ++ + G+ + I Sbjct: 31 RTNYLTFVLEDIFQPQNASATIRTGEILGFS-DVHIISKR---NKCTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 R +N AL ++ S G+ + S D + LE N+K+A+ G E GL + E Sbjct: 87 NLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFE 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYLKIPMHGFTQSYNISVAVAIVMY 174 >gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 227 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A G+ P+E L+ +++GA + Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADAT---GLHKIHAVWPNEMRTLSHTSAGARNWVDV 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 ++ +A+ ++ Q + + ++I K A+ILG+E G + ++ + Sbjct: 73 ETHDSIDEAVCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLS 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G++++LNVS A+AV LY Q Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVVLYEAQ 161 >gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 292 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD +I + + +S +G+L H+P + +S TD Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195 Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA------LILGAEGKGLRPKTQE 246 M W G ++ +KP + DK A ++ G E +GL P Sbjct: 196 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKTVLFGNEARGLEPDILT 253 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 254 RCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 262 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 10/160 (6%) Query: 120 PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESA 174 P+ L VR Q L++VL + P N+GAILRSA ++ + YSP Sbjct: 93 PIPRRALKEVRLPQDPLVLVLLGLEKPGNLGAILRSADGAGAHLVLVAEGVDLYSPQ--- 149 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++++G + +P ++ +A + + G + + ++ +E +A +LG Sbjct: 150 -VIRNSTGVVFSLPVFPVAE-EEAARFLEEKGLYPVAATPRGERVYWEEDYRRGVAFLLG 207 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AE +GL + A + + M G +LNV+ +AA+ LY Sbjct: 208 AEDRGLPEVWLKRAQARVRIPMRGRADSLNVAVSAALLLY 247 >gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] Length = 297 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N I LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL YB-4239] gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL YB-4239] Length = 502 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD + DP NIG++LRSA F D +I S V K+++GAL+ + + Sbjct: 310 LALYLDEITDPQNIGSVLRSAYFFGVDFVIIPTHASAKLGPVANKASAGALDLLDIYQTH 369 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++KM S G+ + S + +P I NDK+ +G Sbjct: 370 QNMKLIEKMKSNGWSVV---STAGRP---NISNDKLENGVG 404 >gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 264 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%) Query: 112 QGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QGL + P + TLD V ++ L+ VLD V DP N G +LR+A A D ++ T+ Sbjct: 79 QGL-VAVCPTTTSTLDDVLAARPRLVAVLDRVRDPGNAGTVLRAADAAGADAVVLTEGSV 137 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS------------K 217 + +S +G+L H+P + L DA+ + G + + + Sbjct: 138 DPFNPKCVRSTAGSLFHLPVVVGVPLADAVTALRRAGSTVLAADGEGDLDLDDLADAAAR 197 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A + G E GL + A ++ + + G ++LN++ AA V LY Sbjct: 198 GVVDGVDLRRPTAWVFGNEAAGLDAAGRGLADAVVRVPLHGRAESLNLATAAVVCLY 254 >gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 177 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ +NIG++ R+A AF + I + + K+A GA + + + ++ Sbjct: 25 IVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGATDSVAWEYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 ++++ S ++T+ + + K N K ALI G E KG+ + Sbjct: 85 ETLPLIEQLKSNSYETLAVEQAENATFLNDFKITQNQKYALIFGNEVKGVAQDVVTASDV 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S +A V ++ Sbjct: 145 VLEIPQYGTKHSLNISVSAGVVVW 168 >gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68] gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F] gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68] gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD +I + + +S +G+L H+P + +S TD Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195 Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLRPKTQE 246 M W G ++ +KP + DK A++ G E +GL P Sbjct: 196 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILT 253 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 254 RCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 220 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ V HN A++RS F + I +R+ + + A GA + + Sbjct: 29 RTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIEQRFGKR---IDKEIALGAQKWVD 85 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 R + + + G+Q I + L Q+ K AL G E GL P+ E Sbjct: 86 INRFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSALFFGTEKDGLSPEILEK 145 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M G ++LN+S +AA+ I QN Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAI---IIQN 173 >gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] Length = 268 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P ++ + + LD V DP N+G ILRSA+A I + + + S + ++A GA Sbjct: 107 PEEGKIKKDEDWIYLDGVQDPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGA 166 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H IS++ A K + + + K E++ + + G+EG G+ K Sbjct: 167 --HFFCNIISSVELAEIKEKTGAVCLVADARGGKDLYEEKWGKGQTLWVFGSEGLGVSEK 224 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + + +++LNV+ AA+V L+ Sbjct: 225 ALELSDLTLLIPLDSRVESLNVATAASVCLF 255 >gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 236 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 7/150 (4%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D R+S + + + ND NIG ++R+A AF+ D + R + + LE Sbjct: 80 IDTRRHSLHIAIENFEND-SNIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLE 138 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H P + D L+ + + ++ PLE + L+ G EG G+ P+ Sbjct: 139 HHPTV-----ADVLEYARKHDLTVVAVDNTPGSVPLETADLPKRCLLLFGQEGPGVTPEA 193 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q AT + G +++N AA +A++ Sbjct: 194 QAGATQTVSIAQFGSTRSINAGVAAGIAMH 223 >gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 262 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + Q++M L ++ N+G I RSA A + ++ + + G + + Sbjct: 111 DEQIIM-LAELSKNDNVGTIARSAAALGVKSYLVPRQGPHPYGRRALRVSMGYISRLKVS 169 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQET 247 +L + + ++ S G+Q I + S+ ++ E+ N K L++G EG GL K QE Sbjct: 170 VYDDLLNTISELQSLGYQVIAAEA-SQHAIDLSTLEVPN-KWVLLMGHEGLGLSQKVQEA 227 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M IK+ NV AAA+ +Y Sbjct: 228 CDCVVKIEMDEDIKSFNVGVAAAILMY 254 >gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 279 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + LD V DP N+G I+R+A A G++ TT +SP ++ G++ +P R Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPET----VRATMGSIFSVPLYR 183 Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246 S +W F+ I + + K ++ ++K I L++G E +GL + Sbjct: 184 FSE-----SAFLNWSTHFKGIIIGTHLKTSVDYRSVDLKKGPIILLMGNEQQGLPDVLAD 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN++ A AV LY Sbjct: 239 RCDQLVRIPQNGRADSLNLAIATAVMLY 266 >gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 123 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249 R++N+T +Q+ + G+Q +GL + + L+ D + +++G+EGKG+ +E Sbjct: 29 RVTNVTRTVQEFQNAGYQVVGLDAGGEHTLDTYTGGKDPVVIVIGSEGKGISRLVRENCD 88 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M +++LN S AA L + FA+ Sbjct: 89 VIVSIPMTAWVESLNASVAAGAVL----SEFAR 117 >gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] Length = 287 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 16/258 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANL 87 D +++ F + R + + G V L R + L+ T + ARL+ A L Sbjct: 27 DDPRLEPF-RALRGRREDGRFIVEGALAVERLLEQAERFPVESLVCTPSHGARLE--AAL 83 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAP----LLSP-TLDAVRNSQ--LLMVLD 139 P P +P + I ++ G + H+G LA P +L P ++A+R + ++V Sbjct: 84 PPGVPAFVLPRKRIAELAGFD-FHRGVLACARRPPTRAVLEPWEIEALRRREQVTVVVAS 142 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+GA++R+A AF D ++ R + + + + +++ G + +P + L + Sbjct: 143 GLADPRNLGALIRNAAAFGVDWVVVDGRGADAFARLTIRASVGNVFRVPLLVSEALPATV 202 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQETATSMAHLHM 256 +++ T+ ++ + + + D+ A +++G EG GL A + + Sbjct: 203 EQLRRELPATVVAATPAGELELDALAVDRPARQIVLVGNEGAGLDEDALARADRRVRIPV 262 Query: 257 PGIIKALNVSNAAAVALY 274 ++NV+ A A+ LY Sbjct: 263 VAGADSVNVAAATAILLY 280 >gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500] Length = 637 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 36/176 (20%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-------KSASGALEH 186 ++++LD+V +PHNIGAI+RS +F + + + + +++ GA+E+ Sbjct: 373 IVVLLDNVENPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLSTSSYRASRGAMEY 432 Query: 187 IPYIRISNLTDA---LQKMHSWGFQTIGLSS-----------------DSKKPLEQEIKN 226 + + I ++A ++K + G+Q I S SK P + + Sbjct: 433 VDVVPIDIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEVVSSKLPSPIRLYS 492 Query: 227 DK---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+ + ++ G+E G+ + +T+ + G+I LNVS A ++ L Sbjct: 493 DRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVL 548 >gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158] gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158] Length = 260 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + H + L G H SA L+ + +AT+ AL + Sbjct: 7 RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPEL-CVATEGALQHAEAQ 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + + V P + + G L P + V ++ +VLD V D Sbjct: 66 AIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTS--VVLDGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIPYIRISNLT 196 N+G+ILRSA A + + + S+ + +S GA + P + L Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDVLAGRLD 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + S G Q I D +P +A + G EG G+ ++ AT + Sbjct: 184 VPIALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537] Length = 257 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 16/231 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H V A+ + K ++AT+ +A D +PH P + + I G + Sbjct: 31 LLDGWHLVEEAIKVKA-KFHAVMATETQMAEHLPD--VPHGVPAFEISEEVAKHIAGTNS 87 Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 QG+ E + L T D V + L+ LD++ DP N+G ++R+A A G++ Sbjct: 88 -PQGIFAEIS-LPEKTFDPKYVHDGAWLL-LDNIQDPGNVGTLVRTADAAGFKGVVLGAG 144 Query: 168 YSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQE 223 + + S + ++ G+ H+ + + TDAL + +G L ++ K Sbjct: 145 TADAYSPKVVRAMQGSQFHLEVLNGDLDEWTDALISNDLPVYG----SLLNEEAKSYHDV 200 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI+G EG G+ + T+ ++ + G ++LNV+ A + ++ Sbjct: 201 QPATQFGLIVGNEGNGMSAALADKTTANLYIPIQGRAESLNVAIAGGILMF 251 >gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 181 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++D R ++ +++VLD+V +NIG++ R+A AF + I + + K+A Sbjct: 16 SIDQYRQAEKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTAL 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI--KNDKIALILGAEGK 238 GA E + + ++ L+++H +TI + + + L + K K ALI G E + Sbjct: 76 GATESVTWAYEKDILQLLKELHQSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVE 135 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G++ + + G +LN+S +A + ++ Sbjct: 136 GVQQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMW 171 >gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255] Length = 265 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+G I+R+A + D II K + + +S G++ + Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNI 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + + + S F + +++ ++ K+AL++G E G+ + + Sbjct: 175 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + ++A+ +Y Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258 >gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705] gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705] Length = 294 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD +I + + +S +G+L H+P + +S TD Sbjct: 140 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 197 Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLRPKTQE 246 M W G ++ +KP + DK A++ G E +GL P Sbjct: 198 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILT 255 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 256 RCGRIVSIPLYGKAESLNLGTSAAVML 282 >gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 217 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L +V V HN A++RS F I + P + + A GA + + Sbjct: 27 AQRTDHLTVVAQDVYQLHNTSAVVRSCDVFGIQNIHVIEEKIPRR--IDKEIAMGAQKWV 84 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 R ++ T L+ + G++ + S D + LE + AL G E GL + Sbjct: 85 DINRYTSTTTCLKNLKKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMR 144 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LN+S +AA+ L Sbjct: 145 EADATVKIPMVGFTESLNISVSAAIIL 171 >gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976] gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976] Length = 365 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 14/183 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQ 99 ++ E + +YG + A I +L AT +L + A + V V Sbjct: 124 NRAEEMKVYGENACLALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEYKKAYHV--VDRA 181 Query: 100 TIDKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++++ G E H G L + P L L R L++LD VN+ N+G I+R+ Sbjct: 182 EMERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTC 239 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 + G+I + + SA A+ A G LE + + + AL ++ + G+Q + L+ Sbjct: 240 AFYGVSGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQIVHLTR 298 Query: 215 DSK 217 + + Sbjct: 299 NKQ 301 >gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] Length = 260 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 37/266 (13%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + I +L +AT+ AL + Sbjct: 7 RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64 Query: 84 DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQG---LALETAPLLSPTLDAVRNSQLL 135 A V + Q I D + G+ + V G L L P SP L A R + Sbjct: 65 QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRP--SPPLPA-RVAHTS 115 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIP 188 +VLD V D N+G+ILRSA A + + + S+ + ++ GA + P Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAP 175 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L + S G Q I D +P +A + G EG G+ ++ A Sbjct: 176 EALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWRDIA 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAAV L+ Sbjct: 226 AHRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297] gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297] Length = 224 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + + ++ D V+ N+ AI+R+A + GI T P V +A GA + Sbjct: 16 RQNDMTILTDKVHKSQNVSAIMRTADSV---GIPTVHMVKPERGRLVYHHTAGGASRFVD 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I L++ +Q + + G SD + ALILGAE G+ P+ + Sbjct: 73 VIVYETLSEGIQSLRNAGMALYAAHWSDRAISYREADYTRPFALILGAEKYGISPEAADA 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LNVS A+ + L Sbjct: 133 ADEHLIIPMVGACESLNVSVASGIIL 158 >gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07] Length = 269 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P++ V ++KI E + L P + D ++VLD V NIGAI Sbjct: 74 IPIRLVDYTVVNKIFKGERKAKAFGLARVPRPAKFHDIENRPGDIIVLDGVKIVGNIGAI 133 Query: 151 LRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +R+++ GI I + S ++ +L +++ G + +P + +++ A + G + Sbjct: 134 VRTSLGLGAAGIVLIDSDLTSIADRRLL-RASRGYVFSLPIV-LTDRESAASFIRDSGVE 191 Query: 209 TIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L S + PL +EI N K+ L+ G+E G + +E A++ + M ++LNVS Sbjct: 192 LAVLDSHGETPL-KEIGNIDRKMTLLFGSEKGGPSERLRELASTTVSIPMISSTESLNVS 250 Query: 267 NAAAVALY 274 + V L+ Sbjct: 251 VSVGVTLH 258 >gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1] gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC] Length = 265 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 ++++ V P N+GAILR A DG+I Y+P+ + +S+ G + +P Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPN----VIRSSLGTVFTLP- 171 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + L LQ + +Q S +K E N + L+ G+E GL + Sbjct: 172 IWSATLDQVLQVILEEKWQAFVTSPRAKTMYFCENYNQPLVLVFGSEKDGLTASWLKGNF 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 S L M G +LN+S A + Y Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAY 256 >gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5] gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING Enzyme gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5] Length = 211 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 14/157 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HI 187 R L++ D+V + HN AI+R +CD + Y AK G + H Sbjct: 22 RQKDLIVFADNVKNEHNFSAIVR-----TCDAVGVLYLYYYHAEGKKAKINEGITQGSH- 75 Query: 188 PYIRISNLTDALQKMHSW---GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ I + + +QK+ + GFQ + LS +S E + + L++G E +G+ P Sbjct: 76 KWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTV-LVVGNELQGVSP 134 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + E A + M G+ ++LNVS A + LY Q Sbjct: 135 EIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQ 171 >gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC BAA-286] Length = 252 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 16/150 (10%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 N+QL++ LD + DP N+G I+R A + I T + + + ++ GAL + Sbjct: 100 NNQLVLALDGIQDPGNLGTIVRLADWYGIKHIFCTHDTADIYNPKVVQATMGALARVTIH 159 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ ++ D + + +G D K EQ+I I +++G EG G+RP+ ++ Sbjct: 160 HVDLAGFLDNNKHIPVYGTLL-----DGKNMYEQDITPHGI-IVMGNEGNGIRPEIEKRI 213 Query: 249 TSMAHLHMPG------IIKALNVSNAAAVA 272 T L++P ++LNV+ A A+ Sbjct: 214 TK--KLYIPNYPEGNTTSESLNVAIATAIV 241 >gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] Length = 328 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 20/160 (12%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L A L++LD + DP N+G ILR+A A ++TT + + + ++ G Sbjct: 169 PALPASAPDHDLVILDRIQDPGNVGTILRTAAAAGIRTVLTTAGTAACWAPKVLRAGMGG 228 Query: 184 ------LEHIPYIRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 E+IP ++ AL + Q++ +SD ++PL A + G Sbjct: 229 HFVLEIHENIPLEQLKAQVGALPLAGTVLQDGQSL-YASDLRQPL---------AWVFGN 278 Query: 236 EGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG+G+ P+ Q + PG +++LNV+ +AAV L+ Sbjct: 279 EGEGIDPELQARLGCRLTIPQDPG-VESLNVAASAAVCLF 317 >gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 21/150 (14%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYI 190 +++++ V P N+GAILRS AF D +I T Y+P+ + +S+ G L + Sbjct: 109 VIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPN----VIRSSVGCLFGMEVY 164 Query: 191 RISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP----KT 244 + N + LQK +S+ T L +S + L + + A++ G E GL K Sbjct: 165 QAENKETLEFLQK-NSFNIYTT-LMDESAEDLYKRDFRQRSAVLFGTEHSGLSDFWIGKG 222 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T MA G I +LN+SNA A+ Y Sbjct: 223 KNTLIPMA-----GSIDSLNLSNAVAITCY 247 >gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella anatipestifer RA-YM] gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 231 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190 +L V++ V N AI+RS A + ++ ++ + P+ S +E +P Sbjct: 42 ILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNVFDPNLSVTKGADTWVEVEKMPRN 101 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249 + S L+K+ G++ + +S ++ + + K + IAL+ G E +G+ + + A Sbjct: 102 KAS-----LEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELLDFAD 156 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G K+ NVS AAA+ +Y Sbjct: 157 ETLAIPMYGFTKSFNVSVAAAICMY 181 >gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] Length = 225 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+++V+ PHN AI+RS C+ + + ++ + +A + + Sbjct: 16 RQTSLTVVMENVHKPHNFSAIVRS-----CEAVGVHRAHAVYPEGGIGNNAGTTVGAHKW 70 Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 +++ N+ Q++ + GFQ + D +E+ + A+++G+E G+ + Sbjct: 71 VQVDTHRNIQTPFQQLKAQGFQLLTAHLDETAVDFREVDYTQPTAVVMGSELHGISEEAA 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G+ ++LNVS A A+ L+ Q Sbjct: 131 QLADHSIVIPMLGLTESLNVSVATALILFEAQ 162 >gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] Length = 259 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYI 190 QL+ V + +P N G ++R +A + + R P L ++++G++ IP + Sbjct: 108 QLIAVTVEIREPGNAGTVIR--IADAMGAAVADHRVGDHPLGGKCL-RASTGSIFAIPVV 164 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ + + G Q + + D + L+ + + A + G E GL + A Sbjct: 165 VAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALA 224 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 H+ M G ++LNV+ AAA+ LY Sbjct: 225 DHRVHIPMSGGAESLNVAAAAAICLY 250 >gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] Length = 228 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R L ++L+ V+ P+N+ A++R+A A G+ P E L+ +++GA + Sbjct: 16 RQPDLTLLLEQVHKPNNVSAVIRTADAA---GVHKVHAVWPDEKMRTLSHTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 + DA++ + S G Q + + ++I K A+ILG E G+ Sbjct: 73 VETHDTVADAVRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIILGGEKHGITQDALTE 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ L+ Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILFEAQRQ 164 >gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118] Length = 255 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + D S K L+ K ++ALI+G E G+ + ++ Sbjct: 173 ADVITDFQDSAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSETIASLSDEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252 >gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 272 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PT D S +V + + P N+G ILRS+ A DG+I R + + + +++ G Sbjct: 117 PTPD---GSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGT 173 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L +P + + L+ + + + ++ + +A+++G E GL Sbjct: 174 LFTVPVLEAEG-EETLKWLKERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSEL 232 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G+ +LNV+ A + LY Sbjct: 233 WMEHADIQVRIPMMGVADSLNVATATTLLLY 263 >gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] Length = 175 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N D + + + G+ + + E++ DK A+++G E KG++ + + + Sbjct: 85 NAVDVVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545] Length = 219 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 12/178 (6%) Query: 106 GKEAVHQGLALETAPLLSPT----LDAV---RNSQLLMVLDHVNDPHNIGAILRS--AVA 156 G +A + L P++SP LDAV R+ +L +L+ D N+ A+ RS A+ Sbjct: 14 GLDASLEDLTRAFTPVISPDRLARLDAVVEQRSFDILPILEGAYDIGNVLAVCRSTEALG 73 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+++ +S +++ GA++ + + DA++ G++ + + Sbjct: 74 IGTLGVVSDTGLKFKQSG---RTSGGAVKWTHLQQWRSTADAVRDAKKRGYRVLTTVFEG 130 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PLE A+ILG E +G+ + ++ A ++ M G ++LNVS A+++ ++ Sbjct: 131 GHPLEHYDWTVPTAVILGNEREGVSEEAKKLADGGVYVSMNGFTESLNVSVASSLVMH 188 >gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 261 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV+ +VLD + D N+G++LRSA A ++ K + S+ + ++ GA + Sbjct: 110 AVQAGVATVVLDRLQDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFAL 169 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + D + + G + SS + L + +LG EG+G+ Sbjct: 170 HLVESAEVGD----LDALGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGVGKALLAR 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + PG ++LNV+ AAA+ LY Sbjct: 226 CSETRRIPQPGGQESLNVAAAAAICLY 252 >gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991] gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991] Length = 243 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +++ V DP N G +LR+ A CDGII KR S + ++++GA E+I Sbjct: 93 FLALVEGVEDPFNFGYVLRTLYAAGCDGIIVGKRNWTSAVNTVTRASAGASEYINIFVSE 152 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251 ++ +Q+M Q L + K + + K + +G E +GL A S Sbjct: 153 DMEATIQQMKKQ--QITFLCAQRKDAISLYDYHFPKKCCIAIGGEMRGLSKAV--MAQSD 208 Query: 252 AHLHMPGIIKALNVSNAAA 270 +L +P + N AAA Sbjct: 209 QNLFIPYRSEFRNAMTAAA 227 >gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] Length = 218 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + L VL+ + P N A +R+ + I +KR ++ + G+ + I Sbjct: 31 RTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKR---NKCTLNPDVTLGSSQWIN 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 R +N AL ++ S G+ + S D + LE N+K+A+ G E GL + E Sbjct: 88 LNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEA 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 148 ADLYLKIPMYGFTQSYNISVAVAIVMY 174 >gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A I + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEIHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] Length = 218 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 5/149 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186 + R + L VL+ + P N A +R+ + I +KR ++ + G+ + Sbjct: 29 SCRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKR---NKCTLNPDVTLGSSQW 85 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 I R +N AL ++ S G+ + S D + LE N+K+A+ G E GL + Sbjct: 86 INLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAF 145 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G ++ N+S A A+ +Y Sbjct: 146 EAADLYLKIPMHGFTQSYNISVAVAIVMY 174 >gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 264 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 9/148 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +Q ++LD V DP N G+I+RSA A + + + + S + ++ GA + Sbjct: 114 RLTQSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEI 173 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L+D L + I SS ++K L + +A + G EG+G+ AT Sbjct: 174 FEGVDLSDLLGRAD---IPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARAT 230 Query: 250 ---SMAHLHMPGIIKALNVSNAAAVALY 274 S+ HL G I++LNV+ ++AV + Sbjct: 231 HRISIPHL---GDIESLNVAASSAVCFF 255 >gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta] Length = 1623 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P ++ Sbjct: 1464 SRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGSLQCISDKQFQHLSVS-AEQWLPLVQ 1522 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 1523 VKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1582 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1583 DVCVEIPQQGIIRSLNVHVSGALLIW 1608 >gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 264 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 29/155 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184 L+++ + + P N+GA+LR+A A + D +I S ++ + +S+ G + Sbjct: 116 LILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVGCVFTNQIAVGT 175 Query: 185 --EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E I +++ IS LQ + + + D KKP A+++G E G Sbjct: 176 SEEIITFLKENKISIYAATLQNSNKYHLE------DYKKPS---------AIVVGTEATG 220 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L ++ AT ++ M G I ++NVS AAA+ ++ Sbjct: 221 LSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIF 255 >gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans WP3] gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] Length = 217 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A GI P E V +ASG+ + + Sbjct: 5 RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHEIHAVWPEIEMRVSGNTASGSQQWVK 61 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 + ++DA+ + Q + + +EI + A+ILG E G+ P+ + Sbjct: 62 SKAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGNERDGVSPEGIAS 121 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A A+ +Y Q Sbjct: 122 ADQHVIIPMIGMVQSLNVSVAGALIMYEAQRQ 153 >gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] Length = 232 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R +V + V HN A++RS AF + + +++ V + A GA + + Sbjct: 39 RTKHFTVVTEDVYQIHNTSAVMRSCDAFGIQDLHLVEEKFGKR---VDKEIAMGAQKWVT 95 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 R SNL D + + G+Q + S + + K A+ G E GL E Sbjct: 96 LHRHSNLEDCVSTLKDKGYQIVATSPHADASYLHDFDYTKKSAIFFGTEKDGLTEGVLEQ 155 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A ++ + M G ++LN+S +AA+ + Sbjct: 156 ADALIKVPMYGFTESLNISVSAAIIM 181 >gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 231 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 15/197 (7%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137 P PV +D +VG +H+G LAL E A LDA+ L++V Sbjct: 33 RFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAA-----LLDALPERALVLV 86 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 87 GCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALD 146 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L + GF LS + + + ++AL++G EG+GL P A + Sbjct: 147 VLVALAERGFAIWTLSPHGRTDIRAIPASMRMALVVGTEGEGL-PDALLARFQSARIPQS 205 Query: 258 GIIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 206 EELDSLNAATATGIALF 222 >gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217] gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217] Length = 217 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 4/154 (2%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L LD R L + ++ V HN A++RS AF I + + + A Sbjct: 20 LFKQVLDE-RTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEELKGKR--IDREIA 76 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239 GA + R + +AL K+ S G+Q + + ++ K DK AL G+E G Sbjct: 77 MGAQKWTSVKRYDSTKNALAKLKSEGYQIVATTPHHTAHKLEDFKLDKPTALFFGSEKDG 136 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L E A ++ G ++LN+S AA+ L Sbjct: 137 LTETVIEAADEYIYIPTFGFTQSLNISVCAAILL 170 >gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 178 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 15/150 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------SPSESAVLAKSASGALEHI 187 L+++LD+V N+G+ R+A DG TK Y P +L K+A GA E + Sbjct: 27 LILILDNVRSALNVGSAFRTA-----DGFALTKIYLCGITAQPPHKEIL-KTAIGATESV 80 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244 + + + A+Q + + G+Q + + +++ LEQ N K+A++ G E G+ + Sbjct: 81 DWEYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGNEVSGVSDEV 140 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN++ + ++ Sbjct: 141 MDIVDGALEIPQYGTKHSLNIAVCVGIVVW 170 >gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] Length = 175 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N DA+ + G+ + + +++ DK A+++G E KG++ + + + Sbjct: 85 NAVDAVDNLRKEGYIVYSIEQAEGSIMLDQLELDKTKKYAIVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. 1-1C] Length = 280 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + LD V DP N+G I+R+A A GII TT +SP ++ G++ +P R Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPET----VRATMGSIFSVPLYR 183 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETA 248 + T H F+ + + + K ++ + KN I L++G E +GL Sbjct: 184 CNESTFLNWSTH---FKGMIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVNHC 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A A+ LY Sbjct: 241 HKLARIPQCGHADSLNLAVATAIMLY 266 >gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella rochalimae ATCC BAA-1498] Length = 280 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 + + LD V DP N+G I+R+ A GII TT +SP ++ G++ +P Sbjct: 126 VYIALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPET----VRATMGSIFSVPL 181 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246 R + T H F+ I + + K ++ + KN I L++G E +GL Sbjct: 182 YRCNESTFLNWSTH---FKGIIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A A+ LY Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLY 266 >gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] Length = 265 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 15/177 (8%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSAVAFSC 159 +D+++G L+LE L P R S + V L+ + P+N+GAI RSA AF Sbjct: 89 LDELLGTWTADWDLSLEPRGALPP-----RTSLPIWVYLEDLRSPYNVGAIFRSAEAFGA 143 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI + + A++A G +P+ R+ +++ G + L + P Sbjct: 144 SGIYLSPATPTPDHPRAARTARGTQHVLPWERLPA-----ERLGGLGLPILALETGG-TP 197 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP--GIIKALNVSNAAAVAL 273 ++ + +++G E G+ P+ A +S + +P G +LNVS AA + L Sbjct: 198 IDTYPFPPEGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254 >gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 244 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188 R L ++ D V+ P N+ AI+RS AF G+ P E K+A G+ + Sbjct: 16 RQPDLRVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPKEGFRAFRKTAGGSFHWVT 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + +A+ ++ + G + SD + +I+G E G+ P T E Sbjct: 73 THTHPTMDNAVTELKAQGHKLYAAQLSDRAVDFREVDYTVPCTIIMGNEVDGVNPVTAEQ 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G++++LNVS+A ++ L Sbjct: 133 ADEHIVIPMMGMVESLNVSSACSIIL 158 >gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1] gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1] gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1] gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94] gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99] gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] Length = 297 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus SJ] Length = 268 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPS-ESAVLAKSASGALEHIPYIRI 192 +VLD++ N+G++ R+A A GI + Y+P+ E++ AKSA G + I + Sbjct: 119 LVLDNLRSSFNVGSLFRTAEAI---GIKEVHLCGYTPTPENSKTAKSALGTDKWIKWSYW 175 Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D + + G ++ + K LE+ + + A++LG E GL + + Sbjct: 176 ESSLDCIDALKERGASIYAFETEKNAKALEEVREIRECAIVLGNERYGLNESVLNRSDEI 235 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + G +LNV A+A+Y Sbjct: 236 LKIRLDGKKNSLNVGTCGAIAMY 258 >gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD] gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD] Length = 260 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + H + L G H A L+ + +AT+ ALA + Sbjct: 7 RDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPEL-CVATEGALAHAEAQ 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + + V P + + G L + P + V ++ +VLD V D Sbjct: 66 AIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVLDGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHI-----PYIRISNLT 196 N+G+ILRSA A + + + S+ + +S GA L I P + L Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARLD 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + S G Q + D P +A + G EG G+ ++ AT + Sbjct: 184 VPVALTDSHGAQAV-YDCDLAGP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33] gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] Length = 297 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 265 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 71/146 (48%), Gaps = 2/146 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L+ V V +P N G ++R A A D ++ + + ++++G++ H+P + Sbjct: 111 GARLVAVPVDVAEPGNAGTVIRVADAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVV 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETA 248 + + + A+ ++ G + ++D + L+ E+ A + G E GL Q A Sbjct: 171 QERDASAAIAQLKESGLTVLATAADGEVSLDDADEMLAAPTAWLFGNEAHGLPRGLQAAA 230 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 231 DHRIAIPIRGRAESLNLATAASICLY 256 >gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] Length = 258 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 23/252 (9%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ ++S + + + L G H + A +K+ + T+NAL HP Sbjct: 15 KHLRGLIEQSSYRKKQDQTVLEGTH-LGLAWVEKRKKLNSIFTTENAL---------EHP 64 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLL------MVLDHVN 142 + V E++++ L+ T P L+ +D +SQ + ++L+++ Sbjct: 65 DICDILDEYEGAVFVIAESLYRDLSTLGTTLPFLA-VVDLPSSSQSVDFSLDTLILENIQ 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRSA A +I TK + S + ++ GA + + D L++ Sbjct: 124 DPGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLNTYENVAIEDVLERF 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + T SS + L Q+ ILG EG+G+ A +++ + PG ++ Sbjct: 184 EIPVYVT---SSHQAESLYQKDLTQACVWILGNEGQGVSDFALAHAQALS-IPQPGGQES 239 Query: 263 LNVSNAAAVALY 274 LNV+ A ++ + Sbjct: 240 LNVAIAGSICFF 251 >gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 209 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASG 182 R L ++L++V+DPHN+GA+LR SCD ++ T+ + L K S Sbjct: 16 RQFDLTVILENVDDPHNVGAVLR-----SCDSVGIREIFVLYTRPGLQNHKLELGKRTSA 70 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + DA + +Q + L+ D+K E ++ AL+ G E G Sbjct: 71 GSRKWIDVYLYREVDACMEHVRRNYQRVYATHLAHDAKSLYELDLAQ-SAALMFGNEADG 129 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L A + G+ ++LNVS A AV+LY Sbjct: 130 LSELALSQADGNFIIPQVGMAQSLNVSVACAVSLY 164 >gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] Length = 263 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 21/182 (11%) Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 VG EA+ + +L A + +D + + L +VL+ V DP N G ILRSA A Sbjct: 79 VGNEALSKITSLSDADDVMTWIDIPKQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGV 138 Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212 I+ S + ++ GA L + +S + Q W G + IGL Sbjct: 139 RQIVCGNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMETYQH-QIWATALGGRNIGL 197 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 E ++ + A + G EG G+ +E A + + M G ++LNV+ AA V Sbjct: 198 -------YEMDL-SQTCAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVC 249 Query: 273 LY 274 L+ Sbjct: 250 LF 251 >gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 267 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 9/154 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALE 185 + + N+ L+++LD + P NIGA+LR+A A II + S V+ S Sbjct: 105 EKITNNSLILILDGIEKPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFT 164 Query: 186 HIPYIR-----ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +I IS L + K+ GF +K + ++ +A+I G+E KG+ Sbjct: 165 RKIFIEKMGSIISWLQENKVKIVGTGFYN---HQKAKNLYKTKLNYSNLAIIFGSENKGI 221 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G + +LNVS+A ++ +Y Sbjct: 222 SNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIY 255 >gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330] gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686] gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 297 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 281 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 18/151 (11%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++L+ + DP N+G ++R+ G+I + + +S G++ +P+ + Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGSIYRVPFFVTKD 193 Query: 195 LTDAL-----QKMHSWGFQTIGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 L + Q+++ + G+ S D KK K A ++G EG GL + Sbjct: 194 LPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKK---------KTAFLIGNEGNGLSDEIA 244 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A + + M G +++LN + +A++ +Y T Sbjct: 245 DLADTYIKIPMQGQVESLNAAISASLLMYET 275 >gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2] Length = 340 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + VL+ + D N+G+ R+A A D ++ + + + + G + +P+ Sbjct: 190 RRRSRIAVLEGLVDHTNVGSAFRNAAALGLDAVLVSPTCADPLYRRAVRVSMGTVFQVPW 249 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQE 246 RI + + + G+ G++ + L++ + D +AL+ G EG G+ P+T Sbjct: 250 TRIPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDHENLALVFGTEGHGITPETDA 309 Query: 247 TATSMAHLHMPGIIKALN 264 + M G + +LN Sbjct: 310 LLDRRVTIPMMGGVDSLN 327 >gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] Length = 268 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 31/260 (11%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K++ + +KSR + + GV ++ AL+ ++ QLL +A+A + A L Sbjct: 14 KQLVALQEKSRIRRKTGEFLIEGVREINLALD-AGFQLTQLLFC-SAIADAEELAALQSK 71 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVR--NSQLLMVLDHVNDPHN 146 + + +++ K A G + +A TL A+ + L+MV + P N Sbjct: 72 LSAEVTQIEVTEEVYKKIAYRSGTEGIIASAKAKKNTLSALDLPKNPLIMVAEAPEKPGN 131 Query: 147 IGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQ 200 IGA+LR+A A D I T Y+P+ + +S+ G L +P S + D L+ Sbjct: 132 IGALLRTADAAGVDAFILANPRTDLYNPN----IIRSSVGGLFTVPVATGSTQEVIDFLK 187 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK------IALILGAEGKGLRPKTQETATSMAHL 254 + + + I L++ I +K AL++G E GL + A + Sbjct: 188 QKNIAIYTAI---------LQEAISYEKQDFTTASALVVGTEADGLSEAWRAAAKQNIII 238 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G + ++NVS AAA+ ++ Sbjct: 239 PMQGRLDSMNVSVAAAILIF 258 >gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] Length = 216 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 9/154 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D+VN PHN+ AI+R+ CD + ++ S + K A + Sbjct: 17 RQPDLTVVMDNVNKPHNLAAIIRT-----CDSVGIETIHAVSNRPSIRKKQKTAGGSTRW 71 Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 +++S ++ + + S G + + S + I + A+++GAE G T Sbjct: 72 VQLSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVMGAEKLGPSSDTI 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 H+ M G+ ++LNVS AAAV L+ Q Sbjct: 132 SLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQ 165 >gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1] gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1] Length = 230 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 27/165 (16%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLA-------KSAS 181 R L +++D VN PHN+ AI+R+ CD + + ++ P + LA ++ S Sbjct: 18 RQPTLTVLMDEVNKPHNLSAIIRT-----CDAVGVPEAHAVPPKHGTLASFEGHTYEATS 72 Query: 182 GALEHIPYIRI---SNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALIL 233 G+ ++++ ++ A++++ + GFQ + S D ++P ++L Sbjct: 73 GSAHK--WVKVHPHADAVSAVRELQAQGFQVLATHLSQRSVDYREP----DYTKPTCVLL 126 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GAE G+ + E A + + M G++++LNVS AAA L+ Q Sbjct: 127 GAEKWGVSDEAAEAADANIVIPMFGMVQSLNVSVAAATILFEAQR 171 >gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM 9941] gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM 9941] Length = 223 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +++++L+ V DP N+G ++RSA AF G+ ++ + + +S G+L +P Sbjct: 76 RGRIVVLLEGVQDPGNVGTVIRSAHAFGA-GVALSRGCADLYNPKTVRSTMGSLFRVPVA 134 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + L+ GF + +P + + + +G+EG GL P Sbjct: 135 RELDPLAFLELARGAGFGLAAATPGGGEP-PGSMPGGNLVVAVGSEGAGLSPGVVRACG- 192 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + +P +LN + AA++ LY Sbjct: 193 -VRVSIPSRAPSLNAAVAASILLY 215 >gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7] gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7] Length = 264 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 20/260 (7%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQL--LAT 74 Y +L R R ++ + + ++H + L G+H A L P +F L L T Sbjct: 12 YKQLMRLARGKREKNADGRPAQH------VLLEGIHLCQAWLQHMGEPELALFDLQRLET 65 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + L L AN + P+ + E L AP +P L A R + Sbjct: 66 QTELQSL---ANALPAGLCHSCEPRLAAGLSQVEHGQGVYFLVMAP--APVLPA-RITHN 119 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + LD + DP N+G +LR+A A + + + SA + +SA GA H + I Sbjct: 120 CLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRSAQGA--HF-VMTIHE 176 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D I + D +PL + A + G EG+G+ P A + Sbjct: 177 HVDLAALRGCLAVPLIATALDDAQPLYDASLPAQCAWVFGNEGQGVDPVLLAQADMRVFI 236 Query: 255 HMPGIIKALNVSNAAAVALY 274 +++LNV+ AA V L+ Sbjct: 237 PQAADVESLNVAVAAGVCLF 256 >gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 230 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHNI A++R+A A + + S L SA+G+ + Sbjct: 15 CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 + DA+ + + G Q + + +EI + ++LG E G+ + + Sbjct: 73 VKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20] Length = 310 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 19/248 (7%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94 N +++H + G V A+ + ++ + T+ AL R WD + V Sbjct: 59 NARAKH----RRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHSEIWDEAVAAGLYVH 114 Query: 95 TVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 Q +D + QGL A E A A+ ++L+ VL DP N G I Sbjct: 115 VTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGNAGTI 171 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A D I+ + + + +S +G+L H+P + L DA+ +H+ G Sbjct: 172 IRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAGLTV- 230 Query: 211 GLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L++D + + + + A +LG E GL + A ++ + + G ++LNV+ Sbjct: 231 -LAADGRGDFDLLEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKAESLNVA 289 Query: 267 NAAAVALY 274 AAAV LY Sbjct: 290 AAAAVCLY 297 >gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862] Length = 256 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 30/258 (11%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++K+Q+ +K R S+ L G H V A+ + K+ ++AT LA L Sbjct: 13 KSWQKLQT--KKGRQASK--TYLLDGWHLVQEAIQHEG-KLHAIMATPEQLAEHQEALPL 67 Query: 88 PHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVLDHV 141 P F + T + + +V + V ++L TA R + + + LD + Sbjct: 68 GVPVFEITTDIAKKLSDLVTPQGVFAEVSLPTA---------TREPRFIHDGAWLFLDAI 118 Query: 142 NDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 DP NIG ++R+A A G++ + YSP ++ G+ H+ + +L D Sbjct: 119 QDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKA----LRAMQGSQFHMT-LTTGDLQD 173 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 G D + I + ALI+G EG+G+ + T ++ + Sbjct: 174 WTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGMAADLAKMTTKNLYIPL 233 Query: 257 PGIIKALNVSNAAAVALY 274 G ++LNV+ AA +A++ Sbjct: 234 TGDAESLNVAVAAGIAMF 251 >gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 228 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ HN+ AI+RSA A C + P + L + SG ++ Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPEKQKWLTNNTSGGSKNWLE 72 Query: 190 IRI-SNLTDALQKMHSWG--FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + N+ DA+ M Q + LS D+ E + A+I+G E G+ K Sbjct: 73 THLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTK-PTAIIVGQEKTGISEKA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E A + M G++++LNVS AAA+ L+ Q Sbjct: 132 LEYADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164 >gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum CFBP2957] gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CFBP2957] Length = 263 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCT 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++H + SS ++ + + + G EG G+ + T ++ + Sbjct: 175 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 231 PQPGGMESLNVAAAAAICLF 250 >gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 298 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 4/168 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDK 103 Q E + G V AL R I + T+ AL R D DA L P + P + Sbjct: 27 QYEQAIVEGPQGVREALLCYERGIRDVYVTQEALERHPDIDALLRRVDPYTHILPNELCS 86 Query: 104 IVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V + QG+ A+ P D + +L++ DP N+G I+R A A D + Sbjct: 87 SVAPNS--QGIFAVIAIPDEEDIRDIFAHGKLVVCALESVDPGNVGTIIRCADACGADAV 144 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 I + + + + +S++G+ HIP + ++ D + GFQ + Sbjct: 145 ILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAREAGFQIL 192 >gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 279 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSA 180 PT D + + + LDH+ DP N+G ILR+A AF ++ + Y+P L +++ Sbjct: 115 PTFD-LSDQHNYLFLDHIQDPSNLGTILRNAAAFDLTKVLIHDSVNLYNPK----LIRAS 169 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 +GA+ I NL L + G + + ++ + PL+Q +I G E G Sbjct: 170 AGAIFSNQISLIKNLDQFLNAIKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEANG 229 Query: 240 LRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274 + + A + + ++LNV+ ++ + LY Sbjct: 230 VSEQLLNQADQTIKIVINNQYAESLNVATSSGIILY 265 >gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H] Length = 180 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V + +NIGA +R A AF+ + +I + S+ + K++ + + Sbjct: 30 LIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKK-MKKASRNEAKWVCVEYSD 88 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + T +LQ + G ++ L +S + K L+LG E KG+ + + Sbjct: 89 STTASLQTLLDEGHAIYSVELCHESVD-YTKVTYPAKCVLVLGNERKGVSEAALKLSLQQ 147 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 H+ M G+ +LNVS A A+ L N K Sbjct: 148 IHIPMFGMGNSLNVSTAGAIVLAECANQIRK 178 >gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 259 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILR A A + T + + SA ++A GA H+ + Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCT 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++H + SS ++ + + + G EG G+ + T ++ + Sbjct: 175 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 231 PQPGGMESLNVAAAAAICLF 250 >gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] Length = 220 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + L+ V+ PHN+ AI+R+A A + + + L SA+G+ + Sbjct: 3 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + +A+ + S G Q + + ++ ++I + ++LG E G+ + + Sbjct: 61 NVKTHRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQEKSGISEEALQ 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] Length = 175 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD + HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 25 LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250 N DA+ + G+ + + ++ DK A+++G E KG++ + + + Sbjct: 85 NAVDAVDNLRKEGYIVYSIEQAEGSIMLDRLELDKTKKYAIVMGNEVKGVQQEVIDHSDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + ++ Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168 >gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 346 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 7/180 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101 ++ E + +YG + A I +L AT +L D + L H V + Sbjct: 104 NRAEEMKVYGENACLALFKQRPDAIVRLWATIEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163 Query: 102 DKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +++ G E H + L + P L L R L++LD VN+ N+G I+R+ + Sbjct: 164 ERVTGTEQHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAFY 223 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + + SA A+ A G LE + + + AL ++ + G+Q + L+ + + Sbjct: 224 GVSRVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRNKQ 282 >gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 255 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP NIG ++R+A A G++ + + + ++ G+ H+ NL Sbjct: 113 LFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFHLKLCS-GNL 171 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + ++ G +D + +Q ++ AL++G EG G+ K + + ++ Sbjct: 172 IEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGMSEKLLKETSLNLYI 231 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AA + ++ Sbjct: 232 PIKGHAESLNVAVAAGILMF 251 >gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPSSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630] gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile] Length = 226 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+G I+R+A + D II K + + +S G++ + Sbjct: 76 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 135 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + + + S F + +++ ++ K+AL++G E G+ + + Sbjct: 136 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 194 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + ++A+ +Y Sbjct: 195 ILVKIPIYGKAESLNAAISSAILMY 219 >gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea 34H] gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 235 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186 R L + ++ ++ HN+ A++R+ CD I + + E+ V SA+G+ Sbjct: 16 RQPDLTVCMEGLHKSHNLAAVVRT-----CDAIGISDVHAVWKSEEAEVRGGSAAGSQNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I DA+ + + G Q + + SD+ + A+ILG E G + Sbjct: 71 IDVHNYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E A + M G++++LNVS A +V LY Q A Sbjct: 131 ELADQHIVIPMVGMVQSLNVSVACSVVLYEAQRQRA 166 >gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196] gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291] gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196] gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291] Length = 265 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+G I+R+A + D II K + + +S G++ + Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + + + S F + +++ ++ K+AL++G E G+ + + Sbjct: 175 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + ++A+ +Y Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258 >gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 264 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 22/254 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--------TKNALARLD 82 K +++ ++R ++ + G+H + AAL + + LLA + L RL Sbjct: 18 KLVKALLTQARQRNKHGQTVIEGIHLIDAALRSDYPFVQILLAESAHHHPEVQQVLTRL- 76 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P P+ T+ + I +A+ P +P+L + + L +L+ V Sbjct: 77 -----PTYTPILTLSDALYESIRSLGTGIDIMAVIKMP--TPSLSMIHDDCL--ILNDVQ 127 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G +LR+A A I+ T + + S ++ GA + ++ + L + Sbjct: 128 DSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQEVLDHV 187 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + F T SS + + Q IA I+G EG+G+ + + AT +A L P ++ Sbjct: 188 QTPLFAT---SSHTDTVIYQHDLKKPIAWIMGHEGQGVCNELMQCATPIA-LPQPNGQES 243 Query: 263 LNVSNAAAVALYIT 276 LNV+ A ++ LY T Sbjct: 244 LNVAIAGSLCLYET 257 >gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens] Length = 1088 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 17/157 (10%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++ + N+ N+GA+ R+ AF ++ R + + + G IP+ R + Sbjct: 145 VVLCERTNNLDNVGAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAIPFTRRGS 204 Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--------------PLEQEIKNDK---IALILGAEG 237 + D +Q + G L + P+ + +D+ +A+++GAEG Sbjct: 205 IADVVQAAKASGHVVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVAVLMGAEG 264 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + Q A + M + ++NV+ A ++AL+ Sbjct: 265 PGLTDEAQRLADVRLTIPMANAVDSVNVATACSIALH 301 >gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] Length = 176 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD++ HNIG++ R++ AF + I + + K+A GA + + ++ Sbjct: 26 LTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N +A+ + + G+ + + E+ K+ K +++G E KG++ + + + Sbjct: 86 NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIVMGNEVKGVQQEVIDHSHG 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169 >gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 229 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49] Length = 260 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 21/258 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + H + L G H SA L+ + +AT+ ALA + Sbjct: 7 RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPEL-CVATEGALAHAEAQ 65 Query: 85 ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + + V P + + G L P + R +Q +VLD V D Sbjct: 66 AIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPE--RVTQSSVVLDGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIPYIRISNLT 196 N+G+ILRSA A + + + S+ + +S GA + P + L Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDALAARLD 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + S G Q I D P +A + G EG G+ ++ A + Sbjct: 184 VPVALTDSHGAQAI-YDCDLSGP---------VAWVFGNEGAGVSAFWRDAAAHRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 234 PGGMESLNVAAAAAVCLF 251 >gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 287 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 13/166 (7%) Query: 122 LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L+P LDAV + + + LD V DP N+G I+R+A A G+I S ++ Sbjct: 120 LTP-LDAVAPKPDETWIALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRA 178 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEI---KNDKIALILG 234 G++ +P +R S + +W +T L S K ++ K + L++G Sbjct: 179 TMGSIFAMPLLRASE-----AEFLTWSKKTAPLVVGSHLKGSVDYRTIAYKGRPVVLLMG 233 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E GL ++ +A + G +LN++ A V L+ + H Sbjct: 234 NEQAGLPDTLAQSCGKLARIPQTGRADSLNLAIATGVMLFEARRHL 279 >gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] Length = 191 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VLD V +N+G++ RSA AF + I + +A + K+A G + + + + Sbjct: 25 LTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFA 84 Query: 194 NLTDALQKMHSWGF------QTIG----------LSSDSKKPLEQEIKNDK-IALILGAE 236 + +A++++H G Q G L + S++ E D+ ALILG E Sbjct: 85 HTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAGDRHYALILGNE 144 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG++ + + + G +LNVS A + ++ Sbjct: 145 VKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 182 >gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 269 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++LL V V +P N G ++R A A D I + ++++G+L H+P + Sbjct: 111 GTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVV 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETA 248 R + L + + G Q + ++D + L+ E+ A + G E GL T A Sbjct: 171 RERDTAAVLDSISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATSARA 230 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256 >gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] Length = 176 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 19 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 78 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 79 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 133 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 134 AGACDKLARIPQAGRADSLNLAIATGVMLY 163 >gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + S G Q + K +EI + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 269 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 7/239 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y+ + + +++ + GV V L++P + LL LA L D + Sbjct: 18 YRDLTTADRRPDRPGGRGLVIAEGVVVVRRLLDSPY-PVRSLLGVPRRLAELADDLHGTD 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + T+ + VG LA+ + AP P + + ++ + V + V D N+G Sbjct: 77 -VPAFSTDADTMAQAVGFHLNRGVLAVADRAPAPDPA-ELLAGARTVAVCEGVGDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGF 207 ++ R+A A DGI+ S + + G + +P+ R+ A L + GF Sbjct: 135 SLFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLDGEWPASLDVLREAGF 194 Query: 208 QTIGLSSDSK-KPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ D+ +PL + ++A +LGAEG GL + A + M + +LN Sbjct: 195 TVAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGVDSLN 253 >gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 269 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 38/264 (14%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--------------PSRKIFQLLATKN 76 K + KSR + N L G+ AL P KI +L AT Sbjct: 16 KNVLVLKDKSRERKKTGNFILEGIREFELALKGFYTIETVFYAEGLFPESKIEELTAT-- 73 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQL 134 L + + +V + KI +E LA+ A +LS L + L Sbjct: 74 ----------LAYQPVLISVSKEVYQKIAYRETTEGILAIAKAKTHILSE-LKFKNKNPL 122 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYI 190 ++V + P NIGA+LR+A A + D +I T Y+P+ + +S+ G + P I Sbjct: 123 VLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPN----IIRSSVGCVFTNP-I 177 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 N T+ + + + + K A+++G E GL + E AT Sbjct: 178 ATGNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTPSAIVVGTEATGLSEEWLENATQ 237 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G I ++NVS +AA+ ++ Sbjct: 238 NIIIPMEGEIDSMNVSVSAAILIF 261 >gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 297 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + L++G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 231 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + L+ V PHN+ AI+R+A A + + + L SA+G+ + Sbjct: 14 ATRQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNNWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 ++D + + + G Q + S+ +E+ + ++LG E G+ + Sbjct: 72 NVKTHHTISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614] gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614] Length = 275 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL P + L + LD V DP N+G I+R+ A G++ + + ++ Sbjct: 114 LLGPRDIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRAT 173 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGA 235 G+L H+P ++ D + + + T+ S D + P E + L++G Sbjct: 174 MGSLFHVPLAKLGK--DEFKSLAATWPGTVAATHLKGSVDYRTPDYAE----PVLLVMGN 227 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 E KGL ++ + G +LN++ A VALY I + H Sbjct: 228 EQKGLEDDMAAACPTLIRIPQVGQADSLNLAVATGVALYEIRRKHL 273 >gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894] Length = 189 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 32 RDGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 91 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 92 ARATP-----EEFIAW-RKSAGVSIVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQ 145 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++A + G +LN++ A AV L+ + H Sbjct: 146 LAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 182 >gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 265 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 ++++ V P N+GA+LR A DG++ Y+P+ + +S+ G + +P Sbjct: 117 FYLIIEQVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPN----VIRSSLGTVFTLP- 171 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + L + LQ + +Q + + E N +AL+ G+E GL Sbjct: 172 IWSATLEEVLQTLSEEKWQVFVTTPRASSLYFCENYNQPLALVFGSEKDGLTSSWLNGDF 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 S L M G +LN+S A + Y Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAY 256 >gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 218 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTICMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 61 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 281 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++L+ + DP N+G ++R+ G+I T ++P +S G++ +P+ Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPK----TIRSTMGSIYRVPFF 189 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L + + ++ K A ++G EG GL + + A + Sbjct: 190 ITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDEIADLADT 249 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + +A++ +Y T Sbjct: 250 YIKIPMQGQVESLNAAISASLLMYET 275 >gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 224 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVA---FSCDGIITTKRYSPSESAVLAKSASGALE 185 R L ++++ VN PHN+ AILR+ A F + I KR E +A G+ + Sbjct: 17 CRMENLTVLVEAVNKPHNLSAILRTCDAAGVFEANFI--CKR---DEVKTFNSTAQGSQK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + A+ + GF+ G + +DS + +LGAE GL + Sbjct: 72 WVKLNNHETTISAVSHLKKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDEL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AA++ L+ Sbjct: 132 ISKVDESIFIPMTGMVQSLNVSVAASILLF 161 >gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] Length = 252 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 8/147 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRI 192 L+ V +++P N G ++R A A ++ P S L ++++G++ IP I Sbjct: 99 LIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAGNSVDPYNSKCL-RASAGSIFSIPVISD 157 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPKTQET 247 + +Q++ G + + + D + L E E+ + A + G E GL Sbjct: 158 PDEARVVQRLRDAGLRVLATTVDGEADLDDPDLEAEL-TEPTAWLFGPEAHGLSTDLAAM 216 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + MPG ++LN+++AA++ LY Sbjct: 217 AHRRVQIPMPGHAESLNIASAASICLY 243 >gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 249 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186 R + +VL+++ PHN A+LRSA A + + ++PS+ + + +L Sbjct: 35 RTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH- 93 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244 R + A+ ++ G++ I + + P+++ ++ K A G E GL Sbjct: 94 ----RYQDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAV 149 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G +++LN+S A + L+ Sbjct: 150 LEAADEYLTIPMYGFVESLNISVTAGIVLH 179 >gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017] Length = 279 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 19/161 (11%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175 P ++P++ L ++LD V N G ++R+ A G I + Y+PS Sbjct: 116 PSITPSMG------LWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVDPYAPST--- 166 Query: 176 LAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 +++ G++ +IR + L+ LQ+ + IG S D ++ L L Sbjct: 167 -VRASMGSVFQQQFIRTHDQALSQWLQQHQGY---VIGASPDGEENFHTFTYPKNTLLFL 222 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G E GL PK + ++ + M G + +LNV+ A ++ +Y Sbjct: 223 GEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVAGSLFIY 263 >gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum Iowa II] gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum] gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium parvum Iowa II] Length = 214 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL +++ N G +LRSA F ++ E ++ G L H+ + Sbjct: 15 EFYLVLSNISKRQNFGTLLRSACGFGVSEVLVV-----GEKKLMTFGNKGTLPHLSLTQY 69 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ + + +G+ SD +P+ A +LG EG GL K + + Sbjct: 70 ENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDYL 129 Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281 H+ + G A LNV+ A ++ + HFA Sbjct: 130 IHIPLYGNGTASLNVAIAGSIVFH----HFA 156 >gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALE 185 A R + L + L++V+ PHN+ A++R+ CD I + ++ E +A G+ + Sbjct: 14 AKRQTDLTVCLENVHKPHNVSAVVRT-----CDAIGIHRVHTVWEEKYQFRGDTAMGSQQ 68 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + +L +A+ + G Q + SD+ + A+I G E G + Sbjct: 69 WVRQTNHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREVDYTKPTAIIFGQERYGATDEA 128 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS AAA+ LY Q Sbjct: 129 IAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQ 163 >gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 256 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 15/169 (8%) Query: 112 QGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167 QG+ L S L+ + + + +++LD V DP N G I+R+ +A + +I TK Sbjct: 88 QGIMF----LYSKNLNTIEDVKGDVVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVD 143 Query: 168 -YSPSESAVLAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 Y+P + + SG + +I Y N+ L + T L DS + E++ Sbjct: 144 VYNPK---TVRATMSGIFKLNIIYETPENIVKFLNDKNYLKIAT-ALHEDSISYEKIELR 199 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A I G EG G+ E + A + + G I++LNVS A + LY Sbjct: 200 ENN-AFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLY 247 >gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502] gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis] Length = 213 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL +++ N G +LRSA F ++ E ++ G L H+ + Sbjct: 15 EFYLVLSNISKRQNFGTLLRSACGFGVSEVLVV-----GEKKLMTFGNKGTLPHLSLTQY 69 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ + + +G+ SD +P+ A +LG EG GL K + + Sbjct: 70 ENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDYL 129 Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281 H+ + G A LNV+ A ++ + HFA Sbjct: 130 IHIPLYGNGTASLNVAIAGSIVFH----HFA 156 >gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD+ + N GA++R A G+++T P VL SA G +P R+ + Sbjct: 94 LVLLDNPRNLGNFGAVVRVAAGLGASGVVSTGDVDPWHPTVLRGSA-GLHYALPVARVDD 152 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A + + F G +P+++ D L G+E GL +T+ A + L Sbjct: 153 --PAALEGELFAFDADG------EPVDRVRFPDGAVLAFGSERHGLSERTRARADRVVSL 204 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++ + N++ + A+ALY Sbjct: 205 PMRPLVSSYNLTTSVAMALY 224 >gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] Length = 230 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHN+ A++R+A A + + S L SA+G+ + Sbjct: 15 CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 + DA+ + + G Q + + +EI + ++LG E G+ + + Sbjct: 73 VKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITDEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] Length = 263 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---LEHIPYIRI 192 +VLD + DP N+G +LRSA A I+ S + ++ GA L+ + + Sbjct: 118 VVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRAGMGAHFLLDIYSRVFL 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + DA Q + + D + P L Q N A + G EG G+ + E Sbjct: 178 PHWLDAYQD------KIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSGVSREILEKVDG 231 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA V L+ Sbjct: 232 SVRIPMLGQTESLNVAMAATVCLF 255 >gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] Length = 253 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ +++ Sbjct: 112 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 L + G D + K ++ LI+G E G+ + Q ++ Sbjct: 171 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 231 PIKGKAESLNAAVAAGIMIY 250 >gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38] gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38] Length = 264 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 23/152 (15%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184 L+++ + + P N+GAILR+A A + D +I S + + +S+ G L Sbjct: 116 LILIGESLEKPGNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIAVGT 175 Query: 185 --EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 E I Y++ +N++ ++S Q DS + Q AL++G E GL Sbjct: 176 TEEVIAYLKANNIS-----IYSATLQ------DSTEYHTQNYTTPT-ALVVGTEATGLSE 223 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + +T + M G I ++NVS AAA+ L+ Sbjct: 224 KWRIESTKNIIIPMQGEIDSMNVSVAAAILLF 255 >gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CC9311] gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CC9311] Length = 290 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V ++ LD + DP N+G +LR+A A + P V+ +S++GA+ +P Sbjct: 117 VEAPDFVLALDRIQDPGNLGTLLRTARAADIQQVWCASGADPLAPKVV-RSSAGAILSLP 175 Query: 189 YIR--------ISNLTDALQKMHSWGFQTIG-LSSD-----SKKPLEQEIKNDKIALILG 234 R + L + L + G Q + L D S +P + L+LG Sbjct: 176 VERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTLPTVLLLG 235 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EG GL P Q ++ L +++LNV+ AAAV L + + Sbjct: 236 NEGAGLDPLLQACCSAGVTLPHSSAVESLNVA-AAAVPLLLERRR 279 >gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 177 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD+V HN+G+I R++ AF+ + I + + K+A GA + + + + Sbjct: 27 VVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPPNREIEKTALGATQSVNWKHYPST 86 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMA 252 DA+ ++ G+ I + + + I +K ALI G E G+ + E Sbjct: 87 LDAIHQLRVDGYLIIAIEQAVDSTMLNQFEPIPGEKYALIFGNEVNGVADEVMEQIDGCI 146 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + G + N+ +A + L+ Sbjct: 147 EIPQFGTKHSFNIVVSAGIILW 168 >gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 5/155 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188 R + L + LD V+ +NI A++R+A A GI P E V +ASG+ + + Sbjct: 16 RQTDLTVCLDKVHKTNNIAAVIRTADAV---GIHQIHAVWPDIEMRVSGNTASGSQQWVK 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 I+ ++ +A + + G Q + + ++I K +I+G E G+ + Sbjct: 73 TIKHYHMDEAAAQFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGNERDGVSEEGLAI 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + M G++++LNVS A+A+ +Y Q A+ Sbjct: 133 ADQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAE 167 >gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 127 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 18/129 (13%) Query: 50 FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L P R ++F L ++ RL L H + V Q ++ Sbjct: 4 MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58 Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 59 DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITT 165 +I T Sbjct: 119 AGVHAVIVT 127 >gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 263 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 4/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP N+GAILR+ A + +K S + + + G + + +L Sbjct: 117 LLLDDIQDPGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQEDL 176 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + ++ F L + L ++ + IA ILG EG+G+ + + M + Sbjct: 177 ALLIDRLE---FSVFSLGMQGESVLNRKF-DQNIAFILGNEGRGISSTLLKKSDQMLSIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 M +++LNV AA++ +Y Sbjct: 233 MIKNVESLNVGVAASIVIY 251 >gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus] Length = 1328 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 NS+L++V ++ P N+G + R++ F ++ + + S S A + +P + Sbjct: 1169 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYVQDKQFQHLSVS-AEQWLPLV 1227 Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S L D LQ+ + G+ IG+ +K L + +K L+LG E +G+ Sbjct: 1228 EVKPSQLVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1287 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1288 LDVCVEIPQQGIIRSLNVHVSGALLIW 1314 >gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda melanoleuca] Length = 1548 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ ++ S S A + +P + Sbjct: 1389 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQGLSVS-AEQWLPLVE 1447 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q ++ L+LG E +G+ + Sbjct: 1448 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1507 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1508 DVCVEIPQQGIIRSLNVHVSGALLIW 1533 >gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP N+G+ILRSA A + + + S + ++ GA H + I Sbjct: 118 VLLDGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGA--HF-VLDIVED 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D + + + SS + + + + +A +LG EG+G+ QE AT + Sbjct: 175 ADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEVVIP 234 Query: 256 MPGIIKALNVSNAAAVALY 274 G +++LNV+ AAAV L+ Sbjct: 235 HLGQMESLNVAAAAAVCLF 253 >gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 286 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ + + LD V DP N+G I+R+A A GII + S ++ G++ +P Sbjct: 129 RDGETWVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPV 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R A ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 189 ARA-----APEEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQ 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++A + G +LN++ A AV L+ + H Sbjct: 243 LAGQADALARIPQQGRADSLNLAVATAVMLFEARRHL 279 >gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 270 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 3/155 (1%) Query: 122 LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TLD + +S + +V + + DP N+G ILR+ A G+I S ++ Sbjct: 105 LGTTLDMLDRSSSGIWLVAERLRDPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRA 164 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + GAL +P ++ + L + Q +GLS D++ L+ G E +G Sbjct: 165 SMGALFTVPIVK-TEWQPFLDWLRQGPGQLVGLSLDTETDYRSADYTAPTFLLTGNEAQG 223 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G +LN + A AV Y Sbjct: 224 MPADYAAACDVLVKIPMLGKADSLNAAVATAVMAY 258 >gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] Length = 255 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ +++ Sbjct: 114 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 172 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 L + G D + K ++ LI+G E G+ + Q ++ Sbjct: 173 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252 >gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] Length = 226 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186 A+R L + L+ ++ PHN+ AI+RSA A GI P + L+ SA+G+ Sbjct: 3 AMRQPDLTLCLEEIHKPHNVSAIVRSADAV---GIHQIHAIWPDQQVKLSVSSAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245 + I ++ +A+ + S Q + + +EI +++G E G+ + Sbjct: 60 VKIISHTSTEEAIAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMMGQEKTGISQQAL 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 120 ALADKHIIIPMAGMVQSLNVSVASALILYEAQ 151 >gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 225 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R L ++L+ + HN A++RS F + + S ++ V A GA + Sbjct: 26 SMRTRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVE--SKNKYKVQRDIARGAGRWV 83 Query: 188 PYIRISN----LTDALQKMHSWGFQTIGLSSDSKK-----PLEQEIKNDKIALILGAEGK 238 + L DA+ K+ S G++ L+ D++ PL+Q +AL G E + Sbjct: 84 DLFNYNEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQ-----PVALSFGTEWE 138 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ + +E A + M G ++ NVS + A+ L Sbjct: 139 GISDEIREIADYKVSIPMVGFTESFNVSVSVALTL 173 >gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 282 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VL DP N G ++R A A D + S + +S++G++ H+P I Sbjct: 124 FIVVLAQTQDPGNAGTMIRIADAAGADAVFICSGSVDVTSPKVVRSSAGSVFHLPSIVNV 183 Query: 194 NLTDALQKMHSWGFQTIGLSS-------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 L + L+ + G Q +G D+ + + A I G E G Sbjct: 184 GLPEVLEWARARGMQLLGADGNGSVDLFDAADCMVDVDLAEPTAWIFGNEAHGFAQFDTS 243 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNVS AAAV L+ Sbjct: 244 EIEHFVSIPLGGHAESLNVSAAAAVCLF 271 >gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 269 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++LL V V +P N G ++R A A D I + ++++G+L H+P + Sbjct: 111 GTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVV 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETA 248 R + L + + G Q + ++D + L+ E+ A + G E GL T A Sbjct: 171 RERDTAAVLDTISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATAARA 230 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AA++ LY Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256 >gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 237 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEH 186 R + ++ + V+DPHN A+LR+A AF + +P + L + L Sbjct: 45 RTRYVTVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHADKWLTLRQ 104 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 P ++ A+Q + + G++ L + + + ++ + AL+ G E G+ + Sbjct: 105 QP-----DIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDV-SQPTALLFGNEHSGVSQEA 158 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G +++ N+S AAA+ALY Sbjct: 159 IRVADATFMIPMYGFVQSFNISVAAALALY 188 >gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca] Length = 1374 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ ++ S S A + +P + Sbjct: 1216 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQGLSVS-AEQWLPLVE 1274 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q ++ L+LG E +G+ + Sbjct: 1275 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1334 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1335 DVCVEIPQQGIIRSLNVHVSGALLIW 1360 >gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 5/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186 A+R L + L+ V+ HN+ A++R+A A GI P E +L A+G+ Sbjct: 3 AMRQPDLTICLEEVHKSHNVAAVIRTADAV---GIPKIHAIWPEEKMRMLVSPAAGSNSW 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + +TDA+ + G Q + K +EI + +I+G E G+ Sbjct: 60 VNVETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQEKTGISQDAI 119 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 120 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQ 153 >gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A CD +I + + +S +G+L H+P + +S TD Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195 Query: 200 ------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETA 248 M W G + L + + A++ G E +GL P Sbjct: 196 FTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILTRC 255 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 256 GRIVSIPLYGKAESLNLGTSAAVML 280 >gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DP N+G +LRSA A I+ S + ++ GA H+ + I + Sbjct: 115 VVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLRAGMGA--HL-LLNIYSR 171 Query: 196 TDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 Q + ++ + + D + P L Q N A + G EG G+ + E Sbjct: 172 VSLPQWLDTYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSGVSREILEKVDGGVR 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA V L+ Sbjct: 232 IPMLGQTESLNVAMAATVCLF 252 >gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] Length = 256 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---- 167 QG+ + + LL+ +++ + +++LD V DP NIG I+R+ A +I TK Sbjct: 88 QGVIVLYSKLLT-SIEEIDGD--VVILDDVQDPGNIGTIIRTMEASGFKNLILTKGSVDV 144 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 Y+P V A +I Y +T+ L+ + T+ L +S + E+K + Sbjct: 145 YNP--KTVRATMGGIFKSNIIYETPERITEFLKDNNYQVISTL-LDKNSIDYRDVELK-E 200 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K A I G EG G+ E+ A + + G + +LNVS A+ + LY Sbjct: 201 KNAYIFGNEGHGISDIFIESTDIKAIIPIYGDVDSLNVSVASGIFLY 247 >gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 266 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 36/274 (13%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I L+ AK++ + R + QSF +K + T L G H + L RKI L Sbjct: 11 IIYLESKDNAKIK-HLRGLIEQQSFRKKQKQT------VLEGTHLCLSWLQE-QRKIISL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVR 130 T+ AL D++ K + V E++++ L+ L T +D + Sbjct: 63 FTTEVALKHADFE---------KIIDIYQGAIFVISESLYRDLSTLGTTLACLAVIDLPQ 113 Query: 131 NSQLL------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +SQ + ++L+++ DP N+G +LRSA A + ++ TK + S + ++ GA Sbjct: 114 SSQAIDFKKDTLILENIQDPGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGMGA- 172 Query: 185 EHIPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H N+ D + + + SS L + ILG EG+G Sbjct: 173 -HFSLYTFENIELDMI--LEQFDIPVFVTSSHHATNLYDQDLTKPCVWILGNEGQG---- 225 Query: 244 TQETATSMAH---LHMPGIIKALNVSNAAAVALY 274 E A S A + PG ++LNV+ A ++ + Sbjct: 226 ASEYALSHAQAITIPQPGGQESLNVAIAGSICFF 259 >gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] Length = 181 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G+I RS AF + + +A + K+A G + + + + Sbjct: 25 LVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAEIHKTALGGEDSVEWKYFT 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQETA 248 DA+ +H G+ + Q++ + A+I+G E KG++ + + Sbjct: 85 RTEDAIVALHDQGYYVYCVEQVEGSVKLQDLSKILTPHSLYAIIMGNEVKGVKQTVVDLS 144 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS A + ++ FAK Sbjct: 145 DNSIEIPQFGTKHSLNVSTTAGIVIW----EFAK 174 >gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 286 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 57/145 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L + LD V DP N+G I+R+ A G+I + S ++ G++ +P Sbjct: 127 KGEDLWVALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPL 186 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R + H G S + + L++G E +GL K E Sbjct: 187 ARADEAAFLAWREHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDKLAEACD 246 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN++ A V LY Sbjct: 247 RLVRIPQAGRADSLNLAVATGVMLY 271 >gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] Length = 229 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASTAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + E Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILMGQEKTGITKEALE 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQ 162 >gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM 271] gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM 271] Length = 181 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L ++ +N+G+I R+A A + +I T + + K+A GA E + + ++ Sbjct: 30 IILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGAQETMAWEYFAHP 89 Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + M G GL +++S+ + + + + LILG E +G+ E + Sbjct: 90 LEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFPLCLILGNEVQGIDDDILEQCDHILE 149 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G +LNVS AA VAL+ Sbjct: 150 IPQFGTKHSLNVSVAAGVALF 170 >gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Glycaspis brimblecombei] gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Diaphorina citri] Length = 239 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R L + L++V+ PHNI A++R+A A GI S+ +A+ H Sbjct: 14 AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +R +++ +A+ + G Q + ++ Q N +ILG E G+ + Sbjct: 71 VKVRTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162 >gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata] Length = 1325 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 NS+L++V ++ P N+G + R++ F ++ + + S S A + +P + Sbjct: 1167 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYIQDKQFQHLSVS-AEQWLPLV 1225 Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S L D LQ+ + G+ IG+ +K L + +K L+LG E +G+ Sbjct: 1226 EVKPSQLVDYLQQKKTEGYTIIGVEQTAKSFDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1285 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1286 LDVCVEIPQQGIIRSLNVHVSGALLIW 1312 >gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] Length = 256 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%) Query: 112 QGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167 QG+ L S L+ + + Q +++LD + DP N G I+R+ +A + +I TK Sbjct: 88 QGIIF----LYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVD 143 Query: 168 -YSPSESAVLAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 Y+P + + SG + +I Y + + L + T L DS + E++ Sbjct: 144 VYNPK---TVRATMSGIFKLNIIYETPEKIVEFLNNKNYLKIAT-ALHEDSISYEKIELR 199 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A I G EG G+ E + A + + G I++LNVS A + LY Sbjct: 200 ENN-AFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLY 247 >gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 250 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 10/154 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEH 186 + R L + L+ V+ PHN+ AILRS CD + + + + L K + EH Sbjct: 14 STRQPSLTVCLEQVHKPHNVSAILRS-----CDAVGINRIHGVWDQKTKLRKGTAMGSEH 68 Query: 187 IPYIRI-SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S++ DA+ + Q + LS DS E + A+ILG E G + Sbjct: 69 WVKTEMHSSIDDAVGVLKQQNMQVLVTHLSDDSVDFREIDY-TQPTAIILGQERHGATEE 127 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS AAA+ LY Q Sbjct: 128 AIALADKNIVIPMVGMVQSLNVSVAAALVLYEAQ 161 >gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 289 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 8/146 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 L++L+ + DP N+G ++R+ G+I T ++P +S G++ +P+ Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPK----TIRSTMGSIYRVPFF 189 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L + + ++ K A ++G EG GL + + A + Sbjct: 190 ITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDEIADLADT 249 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++LN + +A++ +Y T Sbjct: 250 YIKIPMQGQVESLNAAISASLLMYET 275 >gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 22/166 (13%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAV------------- 175 R L ++++ V+ PHN AILRS CD + + ++ P++ + Sbjct: 16 RQPDLTVLMERVHKPHNFSAILRS-----CDAVGVLEAHAIPAKHGIPNLEEAEDLSLKG 70 Query: 176 --LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232 +++ A + + ++ A + + GFQ + S+ Q ++ Sbjct: 71 KTFNETSGSAAKWVGLQLHADTASAFAHLKARGFQVLAAHFSERAVDYRQADYTRPTCIL 130 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 LG E G+ P+ E A + + M G++++LNVS AAAV L+ Q Sbjct: 131 LGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEAQR 176 >gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 225 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 3/150 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I + + + L+ +A+G+ + Sbjct: 1 MRQPDLTVCLENVHKPHNISAVIRTADAVGISQIHAI--WCQNSTKSLSAAAAGSNHWVK 58 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 + + A+ + G Q + + ++I + +ILG E G+ + Sbjct: 59 VKTHATIEKAISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTGISKQALAL 118 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 119 ADHNIHIPMMGMVQSLNVSVASALILYEAQ 148 >gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Conomelus anceps] gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Delphacidae sp.] Length = 239 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R L + L++V+ PHNI A++R+A A GI S+ +A+ H Sbjct: 14 AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +R +++ +A+ + G Q + ++ Q N +ILG E G+ + Sbjct: 71 VKVRTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162 >gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666] gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666] Length = 260 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 22/256 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARL 81 R++ K+++ +Q S + ++L G H AAL P+ IF + A + Sbjct: 14 RDNTLIKELRKLSQDSTAYRKQGRVWLEGDHLCRAALARGKKPTLAIFS--ESFWPSAPV 71 Query: 82 DWDANLPHPFPVK--TVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVL 138 +W +K +P + +I G E+ G LE P + ++L Sbjct: 72 EWSRA-----AIKNIVIPDALLPEISGLESPARMGFVLEL-----PAASGLEAGAASVIL 121 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA AF II K + S + ++ GA H + + A Sbjct: 122 DRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGA--HFALQLVEGVEPA 179 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + + SS L Q+ A +G EG+G+ + + PG Sbjct: 180 --ALAALTVPIVVTSSHQGSFLHQQPLPRPCAWAMGHEGQGVSDDLMARSALKVRIDQPG 237 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ AAA+ LY Sbjct: 238 GEESLNVAAAAAICLY 253 >gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi] Length = 408 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 48/157 (30%) Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ LDHV DP N+GAI+RSA V SCD S +A +A++++G +EH+ Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246 Query: 188 PYIR---------------------------ISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 R + +T + + G Q G + +P+ Sbjct: 247 AVYRSVAPTTTFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPM 306 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + L+LG E KGL P+ + H+ P Sbjct: 307 RRRL------LLLGNEDKGLPPEVVRLCSHAVHIPSP 337 >gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 220 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186 R L ++LD V+ PHN+ AILR+ CD + + ++ S + V ++SG + Sbjct: 16 RQPDLQVLLDQVHKPHNLSAILRT-----CDAVGVPRAHAVSRHQDFTVHRAASSGTGQW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + ++L A++ + G + + +++ K L+LGAE +G+ + Sbjct: 71 VAVETHADLPAAVRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGAEKEGVSEEGA 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M G+ +LNVS AAAV L+ Q Sbjct: 131 ALADGHVIIPMFGLGASLNVSVAAAVILFEAQR 163 >gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5] Length = 218 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 62 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 121 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 122 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 175 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ++A + G +LN++ A AV L+ + H Sbjct: 176 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 212 >gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 8/179 (4%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + KIVG + H +A P ++ +++LD++ N+G+I RSA A Sbjct: 79 EEMGKIVGHKIHHNCMAHGIRP---DDIELSSAGDRIIMLDNITSSENVGSIARSAAALG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIG--LSSD 215 K SP A S H+ I + ++ + ++ + + G++ ++ D Sbjct: 136 VKSYFLPKS-SPHPFNRRALRVSMGYAHMLGIHVYKDIFETIEALKAAGYRVYAAEVTPD 194 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S PL K LI+G EGKG+ + + + M IK+ NV AA++ +Y Sbjct: 195 ST-PLSSLHVTSKWVLIMGHEGKGISQDILDVCDEVVSIEMQEGIKSFNVGVAASIMMY 252 >gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 129 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 189 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ++A + G +LN++ A AV L+ + H Sbjct: 243 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279 >gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] Length = 263 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD + L+++ DP N+GA+LR+A A G++ + + + + +++ GA+ Sbjct: 109 LDKINLGGAYAALENIRDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVF 168 Query: 186 HIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243 + + +L AL + G QT+ L+ + + L Q +++ +A I G EG GL Sbjct: 169 RTAFFQTEDLPAALSLLREKGLQTLAALAGGTTRLLTQLDLRGGVVAAI-GNEGAGLSDA 227 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G ++LN + AAA+ L+ Sbjct: 228 CVDACDPF-TIPMKGRAESLNAAAAAAIILW 257 >gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13] gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] Length = 297 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + L++G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652] gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 129 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 189 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ++A + G +LN++ A AV L+ + H Sbjct: 243 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279 >gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 268 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 12/255 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP 88 K ++S ++R + + GVH + AAL + P +I +T LP Sbjct: 18 KLVKSLLTQARQRKKHGLTVIEGVHLIDAALRSDYPFDQILVSESTHKNPEVQQILTRLP 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P+ T+ + I +A+ P +P+L + L +L+ V D N+G Sbjct: 78 TYTPILTLADALYESIRSLGTGIDIMAMIKVP--APSLSMINEDCL--ILNDVQDSGNVG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +LR+A A I+ T + + S ++ GA + ++ + L + + F Sbjct: 134 TLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQEVLDHVETPLFA 193 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 T SS + + Q IA I+G EG+G+ + + AT +A L P ++LNV+ A Sbjct: 194 T---SSHTDTVIYQHDLKSPIAWIMGHEGQGVCDELMQCATPIA-LPQPNGQESLNVAIA 249 Query: 269 AAVALYIT--QNHFA 281 ++ LY T Q ++A Sbjct: 250 GSLCLYETLRQRNYA 264 >gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1] gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1] Length = 657 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++ +D V D N+GAI RSA D IIT ++ S + K++SGA E IP R+ Sbjct: 474 LILYIDGVVDEGNLGAIARSAYVLGVDAIITPTHHTAEWSPIAIKASSGAAEAIPLFRV 532 >gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 259 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 42/277 (15%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 FS+ +H + R++ K ++ +Q + + ++L G H AAL + + + Sbjct: 5 FSVPVTHVSS--RDNALIKDLRRLSQDNTAYRKQGRVWLEGDHLCRAALARGLKPVMAVF 62 Query: 73 ATK-NALARLDW-----------DANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALE-- 117 + A +W DA LP +I G E+ G LE Sbjct: 63 SESFWPFAHAEWAQAAIKNIVISDALLP--------------EISGLESPARMGFVLELP 108 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TAP L + +V +LD V D N+G+ILRSA AF II K + S + Sbjct: 109 TAPPLQANVASV-------ILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVL 161 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ GA H +R+ D + + + + SS L Q+ A +G EG Sbjct: 162 RAGMGA--HF-ALRLVEGVDP-EALAALTVPIVVTSSHHGSFLHQQPIPMPCAWAMGHEG 217 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ A+ + PG ++LNV+ AAA+ LY Sbjct: 218 QGVSDDLMARASLKVRIDQPGGEESLNVAAAAAICLY 254 >gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 179 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 E L + L+A + ++L ++ N+G++ R+A A + II T + + Sbjct: 10 EMKRLSAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEI 69 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILG 234 K+A GA + + + ++ DA+ ++ + G + GL L I ++ I L++G Sbjct: 70 DKTALGAQDVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEFPICLVVG 129 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E G+ + S+ + G+ +LNV+ AA VAL+ Sbjct: 130 NEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALF 169 >gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3] gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 16/153 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP N+G I+R+A A G+I + S ++ G++ P R S Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARAS-- 192 Query: 196 TDALQKMHSWGFQT--------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++ SW + S D +K + + L++G E GL P+ Sbjct: 193 ---VEEFLSWKKSANVSVVATHLAGSVDYRK---IDYAGKPVVLLMGNEQSGLPPELAGR 246 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A +A + G +LN++ A AV L+ + H Sbjct: 247 ADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279 >gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] Length = 198 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 17/158 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V HN+G++ RSA AF + + + +A + K+A G + + + Sbjct: 32 LIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTALGGEDSVDWRYFE 91 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------------IALILGAE 236 DA++++H G + Q++ A++LG E Sbjct: 92 RTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHPTPNTQHPSPHYAIVLGNE 151 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG++ + + + G +LNVS + ++ Sbjct: 152 VKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIW 189 >gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 265 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++R+A A I +A + + + GAL H P + +S Sbjct: 110 ILVLDALQDPGNVGTVIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAMS- 168 Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D ++ F + +D L D++AL+ EG GL T Sbjct: 169 WEDCAAQLGLAAFVIMAADTDGVNIADLRPGQVPDRVALVASNEGAGLSAHLASAVTQRV 228 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M +++LNV A + L+ Sbjct: 229 AIAMEPTVESLNVGVATGILLH 250 >gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 432 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++V + +++P N+G LR+A A + ++ P + ++A GA+ IP + Sbjct: 280 VILVAEQISNPENLGMTLRTADAAGAEAVVVAGGADPLHRECV-RAARGAVGRIPIYSCA 338 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L + ++ + G +G + + ++ L +A+++G E GL T +S+ Sbjct: 339 DLPAWIGQLRTQGIPVVGATGNVERELYDVDLPIPLAIVVGNETDGLTDATLAACSSLVR 398 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M +LNV AA V LY Sbjct: 399 IPMAPGQDSLNVGVAAGVLLY 419 >gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 181 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V+ + +++VLD+V +N+G+ R+ AF + I + + K+A GA E + Sbjct: 20 VKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGATETVE 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245 + N DA+ K+ G++ + + +++ LE+ ++K A I G E G+ + Sbjct: 80 WEHFENTLDAVAKLKQDGYKIMSVEQAENSLSLEKFAPKADEKYAFIFGNEVYGVEQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S + V L+ Sbjct: 140 DQSDHCLEIPQFGTKHSLNISVSIGVVLW 168 >gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 243 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 16/145 (11%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRI 192 ++ LD + DP NIG I+R +F D +I Y+P +++ G+ +++ Sbjct: 103 IVFLDDLQDPGNIGTIIRLCKSFDIDTLIVKNFDIYNPK----CLRASQGSFFKTNIVQV 158 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETA 248 D L K+ S F I D + E+KN K L+LG EG G+ + Sbjct: 159 DKY-DELSKLMSKDFSIISTLLDKEAT---ELKNFTFPKKSVLVLGNEGNGISQNAID-- 212 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 S +++P ++LNV+ AA+ L Sbjct: 213 LSKHKVYIPISFESLNVATCAAIIL 237 >gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii] Length = 348 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 189 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVIGSLQCISDKQFQHLSVS-AEQWLPLVE 247 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 248 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 307 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 308 DVCVEIPQQGIIRSLNVHVSGALLIW 333 >gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697] gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697] gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 270 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGAI RSA A D ++ T + + + G++ +P+ + L L K++ Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW---TWLDGPLGKLNDL 189 Query: 206 GFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T + L+ DS + + N+ K+A+++G EG GL KT A + + M + + Sbjct: 190 GFRTAAMALTDDSISIDDPILANEPKLAIVMGTEGDGLSHKTIAEADYVVRIPMSHGVDS 249 Query: 263 LN 264 LN Sbjct: 250 LN 251 >gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] Length = 179 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD++ +NIG++ R+A AF + I + + K+A GA E + + + Sbjct: 27 LIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAWEHVE 86 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKI-ALILGAEGKGLRPKTQETATS 250 N D + + + G + ++ LE+ E+ DK A++ G E KG++ + Sbjct: 87 NTEDLIVSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEVKGVQQTVVTESDV 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S + V ++ Sbjct: 147 VIEIPQYGTKHSLNISVSTGVVVW 170 >gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens] gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR RNA-binding protein 1; AltName: Full=TAR RNA-binding protein of 185 kDa; Short=TRP-185 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens] gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens] gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct] gi|1586092|prf||2203267A TRP-185 protein Length = 1621 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606 >gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans] Length = 584 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 41/177 (23%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ +D V D N+GA+ RSA D I+T+ + S + K+++GA E IP ++ Sbjct: 394 LILYIDGVLDEGNLGAMARSAYFLGVDAIVTSTHHIAPWSHIALKASAGAAEAIPIFKVG 453 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------------------- 230 D L K G++ ++ P + +I+ Sbjct: 454 KPADFLAKSSEAGWKIYSSNTAPPAPPSNQSPETEISKVVYTLPQSSKRLDVDHCPVVEH 513 Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGI----------IKALNVSNAAAVALY 274 L++GAE GL Q++ +AH ++ GI + +LNVS AA++ Y Sbjct: 514 PTILMMGAESSGL----QKSLLRLAHYNV-GIPHGRDVNEVGVDSLNVSVAASLLCY 565 >gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys] Length = 1621 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606 >gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 299 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGAL 184 R + ++VLD V NIGAI+R++ A GI+ S+ A +A +++ G + Sbjct: 113 RTTGDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVD----SDLATIADRRLVRASRGYV 168 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243 +P + +++ DA+ G + ++ + E ++++AL+LG+E G Sbjct: 169 FSLPIV-LASRADAIAHFRRTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTSRS 227 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A+ + + ++LNVS A +ALY Sbjct: 228 FESIASHSVSIPINPAAESLNVSVCAGIALY 258 >gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42] Length = 176 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+G I+R+A + D II K + + +S G++ + Sbjct: 26 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 85 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + + + S F + +++ ++ K+AL++G E G+ + + Sbjct: 86 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 144 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + ++A+ +Y Sbjct: 145 ILVKIPIYGKAESLNAAISSAILMY 169 >gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] Length = 159 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ +++ Sbjct: 18 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 L + G D + K ++ LI+G E G+ + Q ++ Sbjct: 77 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 136 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 137 PIKGKAESLNAAVAAGIMIY 156 >gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 247 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 T Q E + + G +V A L R I F + K+ + + +K + + Sbjct: 4 RTHQGEIMIVSGKISVKAILKERKRDIEFVAILDKHNDKESRYVERIAEGLKIKRMSREE 63 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSC 159 +D + + H G + +S L+ + L LM ++ V DP N+G I R+ + Sbjct: 64 MDALATNKT-HGGYLVSCGKRISDPLNYLPKQTLSLMCIEGVTDPFNLGEICRTVASLGF 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS----D 215 DGIIT A L ++++GA E + +++ +L+ L+ + + + + +++ D Sbjct: 123 DGIITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSSDLKAIKA---KKVVMAAAHRGD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGL 240 + L D++ + LG +GL Sbjct: 180 ESESLLTYKLPDRVCICLGGALRGL 204 >gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38] gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38] Length = 220 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ V HN A++RS F + + +++ S + + A GA + + Sbjct: 31 RTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKS---IDKEIAMGAEKWVD 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 R S++ D + + G+Q I + + L E AL G E GL + + Sbjct: 88 INRFSSIQDCITNLKQKGYQIIATTPHNDSCLLHEFDITQPSALFFGTERDGLSEEVMQQ 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LN+S +AA+ + Sbjct: 148 ADGFLKIPMVGYTESLNISVSAAIII 173 >gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84] gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 129 KAGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPV 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++ + ++ +W +T G+S + + + K + L++G E GL Sbjct: 189 VKATP-----EEFLAWK-KTAGVSVVATHLAGAVDYRTIDYKKKPVVLLMGNEQSGLPDA 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ++A + G +LN++ A AV L+ + H Sbjct: 243 LAKEADALARIPQAGRADSLNLAVATAVMLFEARRHL 279 >gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] Length = 263 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 21/182 (11%) Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159 VG EA+ + +L A + +D + + L +VL+ V DP N G ILRSA A Sbjct: 82 VGNEALSKITSLTDADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGI 141 Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212 I+ S + ++ GA L + +S + Q W G + IGL Sbjct: 142 RQIVCGNDSVDIWSPKVLRAGMGAHFLLSIFNRVELSAWMETYQH-QIWATALGGRNIGL 200 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 E ++ + A + G EG G+ +E A + + M G ++LNV+ AA V Sbjct: 201 -------YEMDL-SQSCAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVC 252 Query: 273 LY 274 L+ Sbjct: 253 LF 254 >gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] Length = 271 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L V N + ++ L+ + DP N+G ILR+A A + + + + +SA GA+ Sbjct: 111 LPEVANERPILYLEAIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGAIF 170 Query: 186 HIPYI------RISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +P + RIS D +++ + G + D ++P + G E Sbjct: 171 KVPVVQNVSLERISAFCDEKKRILTGTLLGANKLYTQVDWRQP---------TVIAFGNE 221 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G GL E + M ++LN++ + AV LY Sbjct: 222 GNGLSQACAEACRQALTIPMKSHTESLNLATSVAVVLY 259 >gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 297 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + L++G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 1/142 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ + L+ V DP N+G I+R+A A + G+I S ++ G++ +P ++ Sbjct: 119 EVWVALEQVRDPGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKC 178 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + W +G +K L++G E GL P+ +T Sbjct: 179 TR-EEFIADRGRWTGSVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEIADTCDLHV 237 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G +LN+S A + +Y Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259 >gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A] gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A] Length = 218 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R L ++++ V+ PHN+ AI+R+ CD + + +++ +K + G+ + Sbjct: 16 RQPHLTVLIEDVHKPHNLSAIIRT-----CDAVGILDLHVVNQNGKYPTFSKVSQGSEKW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKT 244 + ++ DA+ + F+ I + SK ++ N + +A++LGAE G+ + Sbjct: 71 VFITTYISIDDAINALKRRKFK-IYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M G++++LNVS AAAV L+ Q Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQ 162 >gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 248 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VLD V +P N+G ILR+A+A + +I T +A ++ GA + +I + Sbjct: 104 FVLVLDGVAEPGNMGTILRTALAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFIYVE 163 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L Q F +D + L+ G EG G++ + Sbjct: 164 SLESLSQDFPEAKFWLTSPRADISL-YNKGFDLSGSFLVFGEEGDGIK---DFSVGERVT 219 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + MPG ++LNV+ AA + L+ Sbjct: 220 IPMPGDTESLNVAQAATLFLF 240 >gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] Length = 256 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 20/222 (9%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AA NNP+ +L T A DW F + V + + I G + LA+ Sbjct: 51 AAQNNPALNASKLYVTP---AYQDWSTR----FEKQDVTERQMATIAGTKTPQGILAVVP 103 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSESAVLA 177 + P + N+ + L + DP N+G ILRS F +++ P V+ Sbjct: 104 MAAIQPEQN---NTLAAVYLHEIQDPGNLGTILRSLAWFGGVRCLLSPGSVDPFNPKVI- 159 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S+ GA+ H+P + + D L + F IG +PL I G E Sbjct: 160 RSSMGAVFHVP-MELDVSIDTLPER----FAKIGCLDMDGEPLSSPEFKACDCYIFGNEA 214 Query: 238 KGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQ 277 +G+ P+ + A + +PG+ I++LN++ A +++Y Q Sbjct: 215 RGV-PRDKLEALNAKPFTIPGVGLIESLNLATAVNLSIYERQ 255 >gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 193 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194 ++LD++ N+GAI RSA I E+ + K+A GA + + + +N Sbjct: 43 VLLDNLRSTWNVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANG 102 Query: 195 LTDALQKMHSWGFQTIGL-SSDSKKPLEQEIK-NDK--IALILGAEGKGLRPKTQETATS 250 LT AL + S G+ I L ++ PL + ND I L+ G E G+ P E + Sbjct: 103 LTLAL-RAKSDGYHLIALEGGENSLPLHTILPLNDSRPILLVAGNEVTGIDPDIFELCDT 161 Query: 251 MAHLHMPGIIKALNVSNAAAVALYI 275 + L M GI +LNV+ A +ALY+ Sbjct: 162 VTFLPMFGIKNSLNVAVATGIALYL 186 >gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 262 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184 L++V + + P N+GA+LR+A A + D ++ S + + +S+ G L Sbjct: 115 LILVAESLEKPGNVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGCLFTNQIATGT 174 Query: 185 --EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E I +++ IS + LQ S+ Q + AL++G E G Sbjct: 175 TEEIIAFLKEKNISFYSATLQNSTSYHTQNFTAPT---------------ALVVGTEATG 219 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L K ++ AT + M G I ++NVS AAA+ ++ Sbjct: 220 LSQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIF 254 >gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 294 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL +V DP N G +LR A A D ++ T + +++ G+L H+P Sbjct: 140 RLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVG 199 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + A+ + G + + + L+ E+ + A I G E GL +T+ A Sbjct: 200 VPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALA 259 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + G ++LN++ AAAV LY Sbjct: 260 DAVVRVPIHGRAESLNLATAAAVCLY 285 >gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 262 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 15/256 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALA-- 79 R++ YK+++ S+ + L GVH A L + P + AT N Sbjct: 7 RDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATINQEVVP 66 Query: 80 -RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 L +A + Q I ++ + V +ET L+ P A+ S +L L Sbjct: 67 LLLQCEAGRTQCIVLPDALYQAISQV--EHGVGLMFVVETPQLVMPV--ALAGSAVL--L 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D++ DP N+G+ILRSA A + + + + + S + ++ GA H ++I D Sbjct: 121 DNLQDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGA--HF-LLKIFENVDL 177 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + + + SS + + +A + G EG+G+ + AT + G Sbjct: 178 AEVVRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIG 237 Query: 259 IIKALNVSNAAAVALY 274 +++LNV+ AAV + Sbjct: 238 AMESLNVAACAAVCFF 253 >gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 2043 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ + I+ ++ +A + S Sbjct: 1874 LHPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVESIVVPEKKVFEHPHFVAAARS 1933 Query: 182 GALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ ++ +L L+ + G+ +G+ + PLEQ ++ A++LGAEG+ Sbjct: 1934 AEL-WIPWEEVAPKDLPCYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1992 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A A+ +Y T+ H Sbjct: 1993 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2035 >gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17] gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17] Length = 178 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 5/145 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V +N+G++ RS AF + I + +A + K+A G + + + + Sbjct: 25 LVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSVDWKYFA 84 Query: 194 NLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +A+ ++ + G+ + S + LE E + + A++ G E KG+ + Sbjct: 85 TTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETE-QGQRYAVVFGNEVKGVSQSVVDLCD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 144 GCLEIPQFGTKHSLNVSVTAGIVIW 168 >gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] Length = 230 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 11/155 (7%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183 A R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ SA + S Sbjct: 14 ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQV 73 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 H ++++DA+ + S Q + SD+ + +++G E G+ Sbjct: 74 KTH------THISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITE 127 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS A+A+ LY Q Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513] gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] Length = 297 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R A A G+I + S ++ G++ +P Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 R S D L +W GF + + + K ++ N + LI+G E +GL Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284 >gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 83 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 84 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 143 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 144 DVCVEIPQQGIIRSLNVHVSGALLIW 169 >gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42] gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42] Length = 273 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 15/197 (7%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137 P PV + +D +VG +H+G LAL E A LDA+ L++V Sbjct: 75 RFPASVPVYVAEAKVLDGVVGFH-LHRGVLALGKREDRGEAA-----LLDALPERALVLV 128 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 129 GCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPHRRGGKALD 188 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L + GF LS K + ++AL++G EG+GL P+ A + Sbjct: 189 LLLALAQRGFAIWTLSPHGKTDIRAIPAAARMALVIGTEGEGL-PEALLARFQSARIPQS 247 Query: 258 GIIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 248 DQLDSLNAATATGIALF 264 >gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 364 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 27/168 (16%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYI 190 L++VLD++ N+G+I RSA A C I+TT R + + LAKSA GA + Sbjct: 185 LILVLDNLRSAANVGSIFRSADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVVATR 244 Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIK----------------------N 226 + AL+ + + F +G+ + + + E++ + Sbjct: 245 HFATTKQALEYLRNKRPNFMLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVLTS 304 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL LG E G+ ++ + M G +LNV++ A V +Y Sbjct: 305 PGVALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMY 352 >gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021] gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021] Length = 274 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGA 149 P+ V P+ + ++ +E+ L + LL LD +R L + D +P NIG Sbjct: 73 PLAEVAPELLWELGERESETPEL-IAVGALLPDDLDRLRPGPGFLGVAFDRPGNPGNIGT 131 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-----QKMHS 204 ++RSA AF G+I T + ++++G+L +P +R + D L Q+ Sbjct: 132 LVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRRPSPDDVLDWVGAQRDGG 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + +G P+ L++G E G+ + +E + + M G +LN Sbjct: 192 LPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARWREMCDEVVRIPMGGAASSLN 251 Query: 265 VSNAAAVALY 274 ++A + LY Sbjct: 252 AASAGTLVLY 261 >gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 277 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL +V DP N G +LR A A D ++ T + +++ G+L H+P Sbjct: 114 RLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVAVG 173 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQET 247 + A+ + G + + ++ L+ E+ +D++ A I G E GL T+ Sbjct: 174 VPVERAVSGLREAGARVLAADGAGERDLDSEL-DDRLLGAPTAWIFGNEAWGLPEATRAL 232 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + + G ++LN++ AAAV LY Sbjct: 233 ADEVVRVPIHGRAESLNLATAAAVCLY 259 >gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 17/152 (11%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + V V DP N G ++R+A A CD ++ + + +S +G+L H+P + +S Sbjct: 133 IAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS- 191 Query: 195 LTDAL------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLR 241 TD + W G ++ +KP + DK A++ G E +GL Sbjct: 192 -TDEFFTWTGDHNLDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 296 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHP-FPVKTVPPQTIDKIV----- 105 G V AL P + +L T AL R LD A PV TV + + Sbjct: 46 GPQAVREALARP-HTVLELFGTPAALDRHLDLVARATTADVPVSTVTDDALAGLAETVAP 104 Query: 106 -GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G AV Q L L A +L+ R +L+ VL + DP N G +LR+A A ++ Sbjct: 105 QGLVAVCQHLDLPLATVLA------RTPRLVTVLAGIRDPGNAGTVLRTADAAGAQVVVF 158 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + ++++G+L H+ +R S+ + + + G + + L+ Sbjct: 159 AGAAVDPYNGKVVRASAGSLFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDLDDLA 218 Query: 225 KNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++A I G+E GL + A + + + G ++LN++ AAAV LY Sbjct: 219 DAGRLAAPTAWIFGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLY 272 >gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding [Thermoanaerobacter ethanolicus CCSD1] gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding [Thermoanaerobacter ethanolicus CCSD1] Length = 158 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 65 SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 ++I ++ +K A + NL V T + K+ G + HQG+ A Sbjct: 20 GKEIEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSKLAGSQN-HQGVVAVGAVYK 78 Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 +D + + L++LD + DPHN+GAI+RSA AF GII K+ Sbjct: 79 YFDVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKKAGCRSKCY 138 Query: 176 LAKS 179 K+ Sbjct: 139 CCKN 142 >gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%) Query: 112 QGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-- 167 QGL L SP DAV S+ L+ VL +V DP N G +LR A A D ++ T Sbjct: 99 QGLVGVCRFLDSP-FDAVVRSRPTLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASV 157 Query: 168 --YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 Y+P +++ G+ H+P + A+Q + G + + + L+ E+ Sbjct: 158 DLYNPKA----VRASVGSHFHLPVAVGVPVERAVQGLREAGVRILAADGAGEHDLDAELD 213 Query: 226 NDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A I G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 214 AGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266 >gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 2035 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ + I+ ++ +A + S Sbjct: 1866 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESIVVPEKKVFEHPHFVAAARS 1925 Query: 182 GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ + +L L+ + G+ +G+ + PLEQ ++ A++LGAEG+ Sbjct: 1926 AEL-WIPWEEVVPKDLPYYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1984 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A A+ +Y T+ H Sbjct: 1985 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2027 >gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074] Length = 275 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL +V DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 121 RLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKA----VRASVGSLFHLP 176 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ + A I G E GL +T Sbjct: 177 VAVGVPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEET 236 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 237 RALADAVVRVPIHGRAESLNLATAAAVCLY 266 >gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] Length = 228 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L +++GA + Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHKIHAVWPNEQMRTLTHTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ DA++ + + G Q + + SD A+I+G+E G+ + Sbjct: 73 VETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIVIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group] gi|113533740|dbj|BAF06123.1| Os01g0742000 [Oryza sativa Japonica Group] Length = 163 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL 220 ++ + S S V++K+++G+LE I + N+ L G++ +G + K PL Sbjct: 1 VVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPL 60 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + + L+LG+EG GLRP + + T + + +PG Sbjct: 61 SEVVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPG 96 >gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 260 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--- 183 D +Q ++LD + DP N+G+ILRSA A + + + S + ++ GA Sbjct: 109 DCPELTQTGVLLDRIQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFL 168 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 LE + + L + + I + +KK + N +A +LG EG+G+ + Sbjct: 169 LEVFEDVSLEKLIETAK------IPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDER 222 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+ + G +++LNV+ AAV + Sbjct: 223 LMVMASDKLVIPHMGAMESLNVAACAAVCFF 253 >gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 297 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLA 177 L LDA +L+ VL V DP N G +LR+A + D ++ T Y+P Sbjct: 121 LESVLDA--GPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKA----V 174 Query: 178 KSASGALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----- 229 +S +G+L H+P + +++L +A + G S + L+ E ++ Sbjct: 175 RSTAGSLFHLPVVLGAEVAHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGP 234 Query: 230 ----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + G E +GL E A + + G ++LN+ AA V LY + Sbjct: 235 DSAYDLGGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLYAS 291 >gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 308 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A + ++ T Y+P +++ G+L H+P Sbjct: 145 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKS----VRASVGSLFHLP 200 Query: 189 YIRISNLTDALQKMHSWGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + A+ + G + D L++ A + G E GL +T Sbjct: 201 VAVGVPVDQAVAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPTAWVFGNEAWGLPEET 260 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 261 RALADAVVRVPIHGKAESLNLATAAAVCLY 290 >gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 229 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYS-PSESAVLAKSASGALEH 186 R S L ++++ V PHN+ AI+R+ CD G++ + +++ +A G+ + Sbjct: 18 RISDLTILVEQVEKPHNLSAIMRT-----CDAAGVLEAHAVARETKTRTFNSTAQGSQKW 72 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P N+ A + GF+ G LS D+ + A +LGAE GL Sbjct: 73 VPLKDHKNIEAAALFLKKQGFKLYGTNLSVDAIDYRYCDY-TGPTAFVLGAEKWGLSEPA 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ M G++++LNVS AA+ L+ Sbjct: 132 TRLMDAAIYIPMRGMVQSLNVSVAASALLF 161 >gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218] Length = 228 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L +++GA + Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHKIHAVWPNEQMRTLTHTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ DA++ + + G Q + + SD A+I+G+E G+ + Sbjct: 73 VETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIVIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 260 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V+D V DP N+G I+R+A A D II K + + +SA G++ ++ + + N Sbjct: 117 IVVVDRVQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLDN 176 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +A + + D++ ++ + AL++G E G+ + + + Sbjct: 177 -EEARDLLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKI 235 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G ++LNV+ ++A+ +Y Sbjct: 236 PMFGKAESLNVAVSSALLMY 255 >gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] Length = 229 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] Length = 273 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPY 189 L++V P N+GA+LR+A A S D +I Y+P+ + +S+ G L +P Sbjct: 120 LILVAQAPEKPGNLGALLRTADAASLDAVIVADLKGDLYNPN----VIRSSVGCLFTVPV 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S +AL + + S +Q A+ +G E GL A Sbjct: 176 AQAST-EEALSYLKARDIAVYAASLGGSVRYDQADYLGASAIAVGTEATGLTEAWTRQAE 234 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + M G I ++NVS AAAV L+ Sbjct: 235 ACVEIPMAGAIDSMNVSVAAAVLLF 259 >gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] Length = 239 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + VL+ + DP N+G R+ A C G++ R + + KS++GA E + + Sbjct: 91 FIAVLEGIEDPFNLGYAFRTLYAAGCTGVLMGSRDWQTAQPTIVKSSAGASEQLAWCLCE 150 Query: 194 NLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251 +L A+++ G SD+ + + N I L +G E +GL R +++ ++ Sbjct: 151 DLGAAVRQCRQAGCVLYCAQRSDAIDYFDADF-NQPIVLAIGGELRGLSRDVLEQSDQNI 209 Query: 252 AHLHMPGIIKALNVSNAAA 270 + + ALN ++A A Sbjct: 210 VIPYARPVRSALNGTSAVA 228 >gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] Length = 228 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ HN+ AI+RSA A C + P L + SG ++ Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPENQKWLTNNTSGGSKNWLE 72 Query: 190 IRI-SNLTDA--LQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 + N+ DA + + H+ Q + LS D+ +EI K A+I+G E G+ + Sbjct: 73 THLHKNIDDAATMMRQHNPNVQILATHLSEDAVDF--REIDYTKPTAIIVGQEKTGISAQ 130 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G++++LNVS AAA+ L+ Q+ K Sbjct: 131 ALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQHQREK 169 >gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] Length = 219 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 17/153 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182 R L +V+D+VN PHN+ A++R SCD + ++ +R + A S+ Sbjct: 17 RQPDLTVVMDNVNKPHNLSALIR-----SCDAVGIHDLHAVSKQRSIHTRQHAAAGSSRW 71 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLR 241 H+ + I AL++ G Q + ++ + +EI A+ILGAE G+ Sbjct: 72 TRLHL-WHEIKEPCSALRRE---GMQLLAATNVAAAVDFREIDYTLPTAVILGAEWDGVS 127 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + G++++LNVS AAAV L+ Sbjct: 128 KEAIGEADRTIMVQTHGMVESLNVSVAAAVILF 160 >gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris] Length = 948 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F +I + + S S A + +P + Sbjct: 789 SRLIVVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRDKQFQSLSVS-AEQWLPLVE 847 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q ++ L+LG E +G+ + Sbjct: 848 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQEL 907 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 908 DVCVEIPQQGIIRSLNVHVSGALLIW 933 >gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] Length = 218 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 AMRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 245 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILR A A + T + + SA ++ GA H+ + Sbjct: 101 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFHLNIVEHCT 160 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++H + SS ++ + + + G EG G+ + T ++ + Sbjct: 161 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 216 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAA+ L+ Sbjct: 217 PQPGGMESLNVAAAAAICLF 236 >gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 229 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 408 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 48/157 (30%) Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ LDHV DP N+GAI+RSA V SCD S +A +A++++G +EH+ Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246 Query: 188 PYIR---------------------------ISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 R + +T + + G Q G + +P+ Sbjct: 247 AVYRSVVPTTTFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPM 306 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + L+LG E +GL P+ + H+ P Sbjct: 307 RRRL------LLLGNEDRGLPPEVVRLCSHAVHIPSP 337 >gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] Length = 251 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ L P+ ++ ++ ++ +++LD + DP N+G I+R + A I+ K Sbjct: 85 QGIIL-IYPMKESSIASIGDN--IVILDRIQDPGNLGTIIRVSDAAGYKDIVLLKGSVDV 141 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDK 228 + +S+ G+L ++ +I + D L K + + L D+ + I K Sbjct: 142 YNEKTVRSSMGSLFNMNFIYMEE--DELIKFMAEKNYKSTATALREDAVSYTDI-IPGSK 198 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I G EG+G+ + E + S + + G ++LNV+ A + LY Sbjct: 199 NAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESLNVAVATGIVLY 244 >gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 275 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 7/150 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ VL V DP N G ++R+A A D +I + + +S++G+L H+P I + Sbjct: 117 LVAVLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNA 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQE 246 +L D + G G + + L+ ++ A + G E +GL + Q Sbjct: 177 SLVDVHGALKMAGIPLFGTTPYADLTLDDLVEPQGPTSVGAPHAWVFGNEAQGLSVEDQS 236 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 S+ + M G ++LN++ AA + LY + Sbjct: 237 MCDSLVRIPMYGRAESLNLAMAATICLYTS 266 >gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1] gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1] Length = 278 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ V D N+G +LR+A A II TK + + S ++ GA + Sbjct: 134 LILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQFGLTIYEGIEA 193 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + L + F T SS + + ++ N +A ++G EG+G+ + AT +A L Sbjct: 194 DEVLAYLRLPVFAT---SSHTDNIIYKQNLNRPVAWVMGHEGQGVCDDIMKLATPVA-LP 249 Query: 256 MPGIIKALNVSNAAAVALYIT--QNHF 280 P ++LNV+ A A+ +Y T Q H+ Sbjct: 250 QPNGQESLNVAIAGALCMYETLRQRHY 276 >gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 651 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ +D V D N+GAI RSA D I+T ++ S + K++SGA E +P R+ Sbjct: 468 LILYIDGVVDEGNLGAIARSAYVLGVDAIVTPTHHTAEWSPIAIKASSGAAEAMPLFRVK 527 Query: 194 NLTDALQKMHSWGFQ 208 Q G++ Sbjct: 528 EPEQFFQSSSQVGWR 542 >gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM 22836] Length = 250 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +L++ LD + DP N+G I+R A + I ++ + + ++ GAL + I Sbjct: 100 DDELVLALDGIQDPGNMGTIIRLADWYGIHHIFCSQDTVDVYNPKVVQATMGALARVN-I 158 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++L+D L + + G D + E++I + I +++G EG G+RP+ + T Sbjct: 159 HYTDLSDFLTR--NKHLSVYGTFLDGENMYEKKITSHGI-IVMGNEGNGIRPEIERLITE 215 Query: 251 MAHLHMPG------IIKALNVSNAAAV 271 L++P ++LNV+ A A+ Sbjct: 216 --KLYIPNYPVGNPTSESLNVAIATAI 240 >gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 229 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + G Q + K +EI + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] Length = 320 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 16/238 (6%) Query: 47 ENLFLY-GVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 E LFL G V+AAL+ + + +L ++ALAR L +P F V + Sbjct: 71 EGLFLVEGAQAVTAALH--ADALVELFIGESALARHAQLTAGTGVPVRF-VTDAAAAALS 127 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + V QGL + + L L + +L+ V + NDP N G ++RSA A D + Sbjct: 128 ETV----TPQGL-VGVSELPGHRLADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAV 182 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +S++G+L H+P I ++ ++++ G Q + S + + L+ Sbjct: 183 VFVGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVRELRELGCQVLATSGHADRDLDD 242 Query: 223 ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A + G E +GL T +A + + + G ++LN++ A+A+ +Y + Sbjct: 243 LAAAGVLAGPTAWVFGNEARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYAS 300 >gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 2045 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ + ++ ++ +A + S Sbjct: 1876 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARS 1935 Query: 182 GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ + +L L+ + G+ +G+ + PLEQ ++ A++LGAEG+ Sbjct: 1936 AEL-WIPWEEVVPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1994 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A A+ +Y T+ H Sbjct: 1995 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037 >gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 248 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D R S + LD + +P N+G I+RSA A DG+I + + +S+ ++ Sbjct: 102 DFDRTSGKFLYLDDIREPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFR 161 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P + A + + F + S ++ DK +++G E KG+ Sbjct: 162 LPIYFM-----AREDLVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMT 216 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + +LN + AA++ +Y Sbjct: 217 HAKGFLNIPISDKVDSLNANVAASIIIY 244 >gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 2045 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ + ++ ++ +A + S Sbjct: 1876 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARS 1935 Query: 182 GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ + +L L+ + G+ +G+ + PLEQ ++ A++LGAEG+ Sbjct: 1936 AEL-WIPWEEVMPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1994 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A A+ +Y T+ H Sbjct: 1995 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037 >gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205] Length = 267 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191 ++ LD + DP N+G ++R+A+A + + P + VL SA AL +P+ R Sbjct: 110 FVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVLRASAGAALA-LPHWRDP 168 Query: 192 -ISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L L + + G Q + + D P + L+LG EG GL P+ A Sbjct: 169 DRTGLVARLAEAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNEGAGLHPELAALA 228 Query: 249 TSMAHLHMPGIIKALNVSNAAA 270 + + +++LNV AAA Sbjct: 229 SHRVTIPHSPAVESLNVGVAAA 250 >gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes] Length = 1621 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ ++ L Q +K L+LG E +G+ + Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606 >gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1] Length = 259 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 29/274 (10%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I + KD+ KL Y+K+ S ++K R Q L G+ AL + S + Sbjct: 2 ENIITSKDNPTVKL------YQKLSS-SKKERL--QYGLFVLEGLRITEDALRDGS--VS 50 Query: 70 QLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L+ T+NA ++ A+L V + + ++I ++ A+ P S Sbjct: 51 HLILTENAYSKTADELLQADL-RDTKVLVISNELGNRIASTDSTQGVFAICRIP--SGRT 107 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGA 183 A + +VL + DP N+G I+R+A A +G+I + YSP + +S G+ Sbjct: 108 PAFCDDGRYVVLYGLQDPGNVGMIIRTADALGINGVILSGSCDLYSPK----VIRSTMGS 163 Query: 184 LEHIPYIRISNLTDAL-QKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + + + N TDAL + G ++ + D+ K E + A+ +G EG GL Sbjct: 164 VFRMA-VSVINDTDALFALLEENGVESSAAVIDKDAVKVTECSFTGRQ-AVFIGNEGNGL 221 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T + M G I +LN + AA + ++ Sbjct: 222 PADVAHRCTRRVTIPMSGNINSLNAAMAAGILMW 255 >gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 256 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGA 183 L + R L + L+ V+ PHN+ A+LRS CD GI ++ + +A G+ Sbjct: 18 LLSTRQPSLTVCLEQVHKPHNVSAVLRS-----CDAVGINRIHGVWDQKTKIRKGTAMGS 72 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + +++ DA+ + Q + LS DS + + A+ILG E G Sbjct: 73 EHWVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDY-TQPTAIILGQEKHGAT 131 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS AAAV LY Q Sbjct: 132 EEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQ 167 >gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 304 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+ LD R L+ VL DP N G I+R+A A D ++ + + + +S + Sbjct: 146 LATALDGAR---LVAVLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTA 202 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----QEIKNDKIALILGAEG 237 G+L H+P I L DA+ +H G L++D + + + + A +LG E Sbjct: 203 GSLFHLPVITGVALDDAVAALHEAGLTV--LAADGRGDFDLFEAESLLEAPSAWLLGNEA 260 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + A ++ + + G ++LNV+ AAAV LY Sbjct: 261 HGLPSEALSRADAVVSIPIYGKAESLNVAAAAAVCLY 297 >gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] Length = 253 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 47/266 (17%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++KK+ + + R L G+H V AL ++K+ +LL T + L+ + + Sbjct: 12 KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V + + + K + + QG+ ++E + P D ++LD V D Sbjct: 65 PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189 P NIG ++R+A A G+I + Y+P V+ + SG + H Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKD 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L + H+ + +G +D AL++G EG G+ + E + Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGMSKEILEMTS 225 Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274 +L++P ++LNV+ AA + ++ Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249 >gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 261 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 21/255 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--- 87 K++++ Q+ R F+ G+ V+ A+ + I QL+ + L R + +L Sbjct: 11 KQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLL-RSQFAQDLVEQ 67 Query: 88 --PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL--MVLDHVND 143 P+ V + + K+ QGLA + D VR Q L + L+ ++D Sbjct: 68 QRQQAIPILEVSGEVFASLSSKDG-PQGLAAVVRQQWASLAD-VRPDQGLCWIALNAISD 125 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P N+G ILR+ A G+I T Y P+ +++ G L ++ + + Sbjct: 126 PGNLGTILRTGDAVGAAGVILLGDCTDPYDPAT----GRASMGTLFSQRLVK-ATWAEFS 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 Q GF +G + + + L++G+E +GL + Q ++ + M G Sbjct: 181 QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ 240 Query: 260 IKALNVSNAAAVALY 274 +LN++ A V LY Sbjct: 241 ADSLNLAVATGVLLY 255 >gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ CD + SE + S A Sbjct: 17 CRMRNLTVLVEAVNKPHNLSAILRT-----CDAAGVFEANFISEKDKVKTFNSTAQGSQK 71 Query: 189 YIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 +++++N A+ ++ GF+ G + + + + ++ +LGAE GL + Sbjct: 72 WVKLNNHETTISAVSELKKKGFKLYGTTLNERSTDYRNFDYSENTCFVLGAEKWGLSDQL 131 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS A ++ L+ Sbjct: 132 ISKVDESIFIPMSGMVQSLNVSVATSILLF 161 >gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 250 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGA 183 L + R L + L+ V+ PHN+ A+LRS CD + + + ++ + +A G+ Sbjct: 12 LLSTRQPSLTVCLEQVHKPHNVSAVLRS-----CDAVGINRIHGVWDQKTKIRKGTAMGS 66 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + +++ DA+ + Q + LS DS + + A+ILG E G Sbjct: 67 EHWVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDY-TQPTAIILGQEKHGAT 125 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS AAAV LY Q Sbjct: 126 EEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQ 161 >gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 274 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 33/157 (21%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 + + LD V DP N+G I+R+A A G+I TT +SP +S G++ IP Sbjct: 122 VYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET----VRSTMGSIFSIPL 177 Query: 190 IRI---------SNLTDALQKMHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 R +N + H G ++TI D K P I L++G E Sbjct: 178 YRFNENAFLDWSTNFKGMIIGAHLQGAVDYRTI----DFKGP---------IILLMGNEQ 224 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GL +A + G +LN++ A A+ LY Sbjct: 225 QGLSNALANRCHQLARIPQNGHADSLNLAIATAIMLY 261 >gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LS TLD + L++VLD + DP N+G +RS A G + P V+ + A Sbjct: 108 LSRTLDDL-GPGLVLVLDGLQDPGNLGTAIRSLEAMGGGGAVVAGGVDPYNPKVV-RGAM 165 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L +P ++ + DAL + + G + + + + P ++ A+++G+E G Sbjct: 166 GSLFRLPVVK-RPIGDALAGLRAAGRRIYLAEAGGALAPWAVDLARGA-AVVVGSEAAGP 223 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ + A + + M G ++LN AA++ Y Sbjct: 224 SPEARALADGVVSIPMAGPTESLNAGVAASLLAY 257 >gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] Length = 262 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 25/192 (13%) Query: 95 TVP-PQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHN 146 T+P P+ I+++ G ++ LAL P LL PTL +LD V DP N Sbjct: 78 TLPDPKQIERVSGLKSPRPLLALCEIPTIEAPQALLQPTL----------LLDDVQDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G +LR+ ++ T+ + S + ++ GAL + R ++ T L + Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALLTMLKKTE 187 Query: 207 FQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII----K 261 IG D + +++ L+LG EG G+ P+ +A + +P + + Sbjct: 188 IPVIGTFIDGVPLRTLRLASEQPYILVLGNEGNGISPEL--SALVSQRITIPSPVDSHCE 245 Query: 262 ALNVSNAAAVAL 273 +LNV+ A A+ + Sbjct: 246 SLNVAVAGAIVM 257 >gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 228 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ HN+ AI+R+A A C + P + L + SG ++ Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRTADAVGCHHVHAV---WPEKQKWLTNNTSGGSKNWLD 72 Query: 190 IRI-SNLTDALQ--KMHSWGFQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 + N+ DA + H+ Q + LS D+ +EI K A+I+G E G+ K Sbjct: 73 THLHKNIDDAAASIRAHNPDVQILATHLSEDAVDF--REIDYTKPTAIIVGQEKTGISEK 130 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E A + M G++++LNVS AAA+ L+ Q Sbjct: 131 ALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164 >gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 249 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL P A + +VLD V DP N+G I+R+A F II + + ++ Sbjct: 95 PLFKP---ATPKNLFSLVLDGVQDPGNMGTIIRTADWFGFKNIICSNNCVEVYNPKTVQA 151 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+L + I +L L + G D K + + N+ + +ILG EG+G Sbjct: 152 TMGSLSRV-NIFYEDLPGILTNVK---LPVFGAVLDGKSIYKTDWGNEGL-VILGNEGQG 206 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + T + G ++LNV+ +AA+ Sbjct: 207 ITPPVMKLITHPVTIPRIGGAESLNVAISAAI 238 >gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357] Length = 229 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQRQ 164 >gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t. morphotype B'] Length = 262 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 62/147 (42%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ + ++L+ + DP N+G I+R+A D I TK S + ++ GA+ I Sbjct: 105 TIKQNGTYLILEGIKDPGNLGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKI 164 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR +T + + L + A+++G E G+ T+ Sbjct: 165 DIIRNYEMTSYVDFFRENKVKIYATDLYQSNNLYTTKFDGSSAIVIGNEATGISEYTRAQ 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A S + +++LN + A ++ LY Sbjct: 225 ADSTIKIPTRDNLESLNAAIATSIVLY 251 >gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 228 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + LD V+ +NI A+LR+A A + +S E V +ASG+ + + Sbjct: 16 RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A+ + Q + + SD+ + A+ILG E G+ P A Sbjct: 74 RVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGNERDGVSPAGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS AAA+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQ 164 >gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74] gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74] Length = 270 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 114 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPK----CVRASVGSLFHLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + +A+ + G + + L+ E+ + A + G E GL +T Sbjct: 170 VATGVPIEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEET 229 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 230 RALADAVVRVPLHGKAESLNLATAAAVCLY 259 >gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 305 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 11/150 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ V DP N G ++RSA A C+ ++ + + +S +G+L H+P + + Sbjct: 145 LIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLFHLPILTMD 204 Query: 194 NLTDALQKMHSWGFQTI-----GLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPK 243 T A Q H G + G S + L ++ ++ G E +GL Sbjct: 205 ESTFA-QWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTCVLFGNEARGLETG 263 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E A + + + G ++LN++ +A++ L Sbjct: 264 MLEQADDIVSIPIYGKAESLNLATSASIML 293 >gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] Length = 255 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + D + K L K ++ALI+G E G+ + ++ Sbjct: 173 ADVITDFQDAAIPVYASMLDKTAKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252 >gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 279 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +V D P NIG+I+RSA AF DG+I T + ++++G+L +P +R+ Sbjct: 116 LGVVFDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRVP 175 Query: 194 NLTDALQKM---HSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETA 248 + + ++ + + G + + +D ++ + L++G E GL +E A Sbjct: 176 SQREVMEWVAARRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAWKELA 235 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LN +NAA LY Sbjct: 236 DELVRIPMTGAASSLNAANAATAVLY 261 >gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571] Length = 255 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172 Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + D + K L K ++ALI+G E G+ + ++ Sbjct: 173 ADVITDFQDAAIPVYASMLDKAAKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252 >gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 31/156 (19%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184 L+M+ + P NIGA+LR+A A D +I T Y+P+ + +S+ G + Sbjct: 115 LIMIAEAPEKPGNIGALLRTADAAKLDAVIIANPKTDLYNPN----IIRSSVGTVFTNSI 170 Query: 185 ------EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 E I +++ +N+ K+++ Q DS L + K + A+++G E + Sbjct: 171 GTGTTSEIIDFLKNNNI-----KIYAAALQ------DSSSYLAEGFK-EATAIVVGTEHQ 218 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + + A + + M G + +LNVS +AA+ ++ Sbjct: 219 GLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIF 254 >gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a] gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a] Length = 283 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V NDP N G ++RSA A D ++ T +S++G+ H+P I Sbjct: 115 RLVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSAGSHFHLPVIVE 174 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 T+ + + + G + + S +++ L+ + ++ A + G E GL P A Sbjct: 175 PTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGELDGPTAWLFGNEAHGLDPAGLAAA 234 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN++ A+A+ LY Sbjct: 235 DAALRVPVYGQAESLNLAVASALCLY 260 >gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 177 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 3/150 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 AV + ++++LD+V +NIG++ R++ AF D I + + + K+A GA E + Sbjct: 19 AVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTALGATESV 78 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKT 244 + + + ++K+ G + + + + +K A+++G E KG++ + Sbjct: 79 DWEYVEDTLTLVKKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYAIVMGNEVKGVQQEV 138 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S V ++ Sbjct: 139 INASDFCIEIPQLGTKHSLNISVTTGVVIW 168 >gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 218 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++RS +F + + + + + A GA + + Sbjct: 28 RTTHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNAKR--IDREIAMGAQKWVDV 85 Query: 190 IRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R ++ + ++ + G++ + S D+ + LE+ +K A+ G E +GL E Sbjct: 86 ARHNSASSCIKSLREQGYKIVATSPHKDAHR-LEEFDVTEKAAIFFGRETEGLSELVMEE 144 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL-YI 275 A ++ M G ++LN+S +AA+ L YI Sbjct: 145 ADDFIYIPMVGFTESLNISVSAAITLQYI 173 >gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 16/148 (10%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTD 197 V DP N G ++R+A A CD ++ + + +S +G+L HIP I + + D Sbjct: 138 QVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVIAMGTNDFFD 197 Query: 198 AL--QKMHSWGFQTIGLSSDSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQ 245 + Q + W G + +KP +E + D A++ G E +GL KT Sbjct: 198 WMKEQGLDIWAADVYG--TRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEARGLNGKTL 255 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + M G ++LN++ +AA+ L Sbjct: 256 EQCQRIVSIPMYGKAESLNLATSAAIIL 283 >gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] Length = 182 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIP 188 L+++LD+V HNIGA+LR+A AF + ++ + + + KSA GA E+ P Sbjct: 26 LVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGAEFSVRWEYSP 85 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKN-DKIALILGAEGKGLRPKTQ 245 +I ++ + G++ + + + PL+ I+ K AL+ G E G+ T Sbjct: 86 EAQIP-----VRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVFGNEVSGVEQATI 140 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LNVS A + ++ Sbjct: 141 DLCDGSVEIPQYGTKHSLNVSVACGIVVW 169 >gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] Length = 396 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 58/216 (26%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK--- 103 +++G H V A L R+I L N + +L + VP + DK Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEK-------YGIVPKRLKDKNAL 208 Query: 104 -IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----------------------------- 133 I+ K VH G+ L+T L P + V +++ Sbjct: 209 NILCKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKK 268 Query: 134 ---------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + LD + DP N+G+ILRSA F D I+ + V K Sbjct: 269 VIRDDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANK 328 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +++GAL+ I + + + + G+ I S Sbjct: 329 ASAGALDLIDIYQTGSSLKFIDSVRQNGWHVISTSG 364 >gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] Length = 261 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + L V DP N+G I+R+A A C G+I S ++ G++ +P Sbjct: 114 KAADCWVALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPL 173 Query: 190 IRISNLTDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKG 239 R A + W +G S+D +KP ALIL G E +G Sbjct: 174 SRCGEAEFAAWR-KGWPGSVVGTLLSATHSHASADYRKP----------ALILMGNEQQG 222 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L P+ + M G +LN+S A + +Y Sbjct: 223 LTPEMAALPDLNVKIPMRGRADSLNLSVATGIMIY 257 >gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 253 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 47/266 (17%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++KK+ + + R L G+H V AL ++K+ +LL T + L+ + + Sbjct: 12 KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-VNKKVEELLIT-SKFEHLN-EIEI 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V + + + K + + QG+ ++E + P D ++LD V D Sbjct: 65 PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189 P NIG ++R+A A G+I + Y+P V+ + SG + H Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVINDNLSGWIRHFKD 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L + H+ + +G +D AL++G EG G+ + E + Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGMSKEILEMTS 225 Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274 +L++P ++LNV+ AA + ++ Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249 >gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 254 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD++ DP N+G I+R+A A +G++ + Y+P ++ G+ HI I Sbjct: 113 VLLDNLADPGNVGTIIRTADAAGFNGVVLSPESVDLYNPKTQ----RAMQGSQFHIDII- 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 I +LTD + ++ + D + K L K ++ L++G E G+ + + Sbjct: 168 IKDLTDVITQLEASDIPVYASMLDKTAKKLPDFEKVAQLGLVIGNEAHGVSDFIANLSDT 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LN + AA + +Y HFA Sbjct: 228 KLYIPIFGQAESLNAAVAAGIMIY----HFA 254 >gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 250 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182 D V ++VLD + DP NIG ILR+A+A I+ T ++P ++ G Sbjct: 96 DFVFKDDFILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKA----IRAGMG 151 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGL 240 A + + NL+ A++ + + I L++ + +E K L+ G E G+ Sbjct: 152 AQFSLKFRYFENLS-AVRNYPTLKERKIWLTTPHEGVSCYSEEFKLSNSVLVFGEEANGI 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T + L I++LNV+ AA + L+ Sbjct: 211 EDFSVGEKTMIPTLSN---IESLNVAQAATIYLF 241 >gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] Length = 260 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190 L++VL + P N+GAILR+A D ++ + +SP + ++++GA+ +P Sbjct: 110 LVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQ----VIRNSTGAVFALPVY 165 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ +A + + + + + ++ + +A +LGAE KGL + A Sbjct: 166 PVAE-EEAARFLEEQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQV 224 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ AA+ LY Sbjct: 225 RVRIPMRGRADSLNVAVTAALLLY 248 >gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 280 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G I+R+ A G++ + + ++ G+L H+P Sbjct: 127 QGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFHVPL 186 Query: 190 IRISNLT-DALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +++ AL K L S D + P + K + L++G E KGL T Sbjct: 187 AKMTKEEFKALAKDWPGTVAATHLKGSVDYRTP---DYKQPAL-LVMGNEQKGLEDDTAA 242 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 ++ + G +LN++ A ++LY I +NH Sbjct: 243 ACRTLIRIPQVGEADSLNLAVATGISLYEIRRNHL 277 >gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58] gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58] Length = 286 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 16/153 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP N+G I+R+A A G+I + S ++ G++ P R S Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARAS-- 192 Query: 196 TDALQKMHSWGFQT--------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++ SW + S D +K + + +++G E GL P+ Sbjct: 193 ---VEEFLSWKKSAHVSVVATHLAGSVDYRK---IDYAGKPVVILMGNEQSGLPPELAGK 246 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A +A + G +LN++ A AV L+ + H Sbjct: 247 ADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279 >gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC 35110] gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC 35110] Length = 272 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 17/154 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++ D + DP N G ++R+A F D I + + + ++++G+L +P Sbjct: 123 KKTALVLIWDGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLFALPL 182 Query: 190 IRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP---- 242 I+ ++L D L++ T+ SS + + + K K ALI+G+E G+ Sbjct: 183 IKSASLGFVVDELKQKR----LTVYASSPAGTSIWEVSKPKKTALIIGSEANGVTSALFL 238 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 KT + T +PG A+ NAA A +T Sbjct: 239 KTDQQIT------IPGNSSAVESLNAAISAGILT 266 >gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 217 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 8/151 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + + ++ + HN A++RS F + + +RY S + + A GA + + Sbjct: 29 RTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKS---IDKEIAMGAQKWVD 85 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247 ++T+ ++ + + G+Q I + L ++ K AL G E GL + + Sbjct: 86 INTFDSVTNCIESLKNKGYQIIATTPHENDCLLEDFDISKPSALFFGTERDGLSEEILKQ 145 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M G ++LN+S +AA+ I QN Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAI---IIQN 173 >gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 263 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 19/159 (11%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178 S T V ++L ++LD + DP N+G I+R A F ++ T Y+P V A Sbjct: 96 STTAGNVETNELTLMLDGIQDPGNLGTIIRLADWFGIRHVVCSTDTVDVYNP--KVVQAT 153 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S A + Y + L DAL F G D Q++ I +++G EGK Sbjct: 154 MGSIARVKVSYTPLETLLDALPP----SFPVYGTLLDGDNIYTQQLCAYGI-IVMGNEGK 208 Query: 239 GLRPKTQETATSMAHLHMPGI------IKALNVSNAAAV 271 GL ++ T L +P ++LNV+NA A+ Sbjct: 209 GLSQGVRKRVTH--RLLIPSFAIGEERAESLNVANATAI 245 >gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] Length = 209 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI 187 R + L + +D+V HN+ AI+R+ CD + K Y + V + GA + I Sbjct: 19 RQNTLRVFMDYVFSSHNLSAIVRT-----CDAVNVGKLYYRHQRKVRLNNDITMGAHKWI 73 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQE 246 + + ++ + + + G+Q + D + +E+ K LI LG E G + + Sbjct: 74 FHEYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGASDISIK 133 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A + M G+ ++LNVS A AV LY Q A Sbjct: 134 YADKKVIIPMYGMSQSLNVSVANAVILYEAQRQRA 168 >gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989] gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989] Length = 242 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YS 169 H G+ L P L L +D V DP+N+G+I R+ A CD +I KR +S Sbjct: 67 HGGVLLIAEEKQIPQLIETYVHGFLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRDWS 126 Query: 170 PSESAVLAKSASGALEHIP 188 +E +L K+++GA E +P Sbjct: 127 FAEQTIL-KASAGAYEKLP 144 >gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] Length = 250 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 40/253 (15%) Query: 39 KSRHTSQPENLFLY----GVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPHPFPV 93 K H+SQ LY G+ AL P ++I +L T+ A N +P Sbjct: 13 KKLHSSQGRKKSLYYVIEGLRCSQEALKRLPQQQIIAILVTEKA-------DNPNYPLNK 65 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILR 152 K + + + + + QG+ + P L+ + + ++VLD + DP NIG ILR Sbjct: 66 KYIITEKDFEALSQTQNPQGVLILAE---KPKLEELSFDDDFILVLDRIQDPGNIGTILR 122 Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMH 203 +A+A +I T ++P ++ GA + + I+NL + LQ+ Sbjct: 123 TAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFSLKFSYITNLAELKNIAKLQQRK 178 Query: 204 SWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 W T G+S +K E K L+ G E G+ + T + L I+ Sbjct: 179 IW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANGIEDFSVGQKTMIPTLSD---IE 229 Query: 262 ALNVSNAAAVALY 274 +LNV+ AA + L+ Sbjct: 230 SLNVAQAATIYLF 242 >gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 508 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R + + +D +DPHN A+LRS AF + +R +E +++ + S E Sbjct: 51 AARLDAVTVAMDAPHDPHNGAAVLRSCDAFGLQRLHIIER---AEQFLVSNTVSRGSERW 107 Query: 188 PYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +R T+A + ++ + G + + + + ++AL+LG E G+RP Sbjct: 108 VDVRTHASTEAAVAELRASGHELVATHPEGELTPRDLSSIPRLALVLGNERDGIRPDLAA 167 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LNVS AA+ L Sbjct: 168 ACARAVRVPMRGFAESLNVSVTAAILL 194 >gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DP N+G +LRSA A ++ + + + S + ++ GA + ++L Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L F T L + + L E + A + G EG G+ + A + M Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234 Query: 257 PGIIKALNVSNAAAVALY 274 ++LNV+ AA + L+ Sbjct: 235 HDATESLNVAMAATICLF 252 >gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 169 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D+ R+ LM L ++ N+GA+ R+A A D I+ T + + K+A GA E Sbjct: 11 DSARHPVTLM-LYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQET 69 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P+ ++ +A+ + + GL + +S+ + +ALI+G E +G+ Sbjct: 70 VPWRHFADPVEAITVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDAL 129 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G+ +LNV+ AA VAL+ F K Sbjct: 130 LSHCDGVIEIPQYGVKHSLNVAVAAGVALFECVRVFRK 167 >gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 248 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 14/184 (7%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V + Q + KI + + LAL P L + + ++ +VLD V DP N+G I+R Sbjct: 65 VFEITEQELTKISSLQNPQEALALIEIPQLDVNVLEIEK-EINLVLDGVQDPGNLGTIIR 123 Query: 153 SAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +A F II +K Y+P V A S A ++ Y+ + A Q Sbjct: 124 TADWFGFSNIICSKNTVDVYNP--KVVQATMGSLARVNVSYVDLPAYLIAQQ------LP 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G D K Q+ LILG+EG G+ + + G ++LNV A Sbjct: 176 KFGTLLDGKNIYHQDWPEAGF-LILGSEGNGISDEIISLLDGSVTIPKLGQTESLNVGIA 234 Query: 269 AAVA 272 AA+ Sbjct: 235 AAIC 238 >gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DP N+G +LRSA A ++ + + + S + ++ GA + ++L Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L F T L + + L E + A + G EG G+ + A + M Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234 Query: 257 PGIIKALNVSNAAAVALY 274 ++LNV+ AA + L+ Sbjct: 235 HDATESLNVAMAATICLF 252 >gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA + ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 259 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALE 185 R ++ V++ + + N+ A++RSA A G K +Y SE ++A GA + Sbjct: 67 RTYTVVPVVEGLANTGNVSAVMRSAEALGYQGFGIIKGQVQKYKTSE-----RTAQGADK 121 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + +A+ + + G++ + + + +P++ AL+ G E +G+ + Sbjct: 122 WLDVWTWPTAAEAVPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEVEGVSRELL 181 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + + G ++ N+S AAA+ALY Q Sbjct: 182 AMADARCVIPIVGFTQSFNISVAAAIALYHAQR 214 >gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DP N+G +LRSA A ++ + + + S + ++ GA + ++L Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L F T L + + L E + A + G EG G+ + A + M Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234 Query: 257 PGIIKALNVSNAAAVALY 274 ++LNV+ AA + L+ Sbjct: 235 HDATESLNVAMAATICLF 252 >gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197] gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197] gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] Length = 229 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q+ Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQHQ 164 >gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170] gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170] Length = 216 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKS-ASGALEHI 187 R + + ++ V HN A++RS F D + R+ L K+ A GA + + Sbjct: 29 RTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFGKR----LDKNIAMGAQQWV 84 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 R + + + G+Q I + L + DK AL G E +GL + + Sbjct: 85 DVKRHEDTESCISHLRDQGYQIIATTPHDDSCLLNDFNLDKKTALFFGTEKEGLSEEVMQ 144 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LN+S +AA+ L Sbjct: 145 KADGFLKIPMVGFTESLNISVSAAIIL 171 >gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] Length = 229 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1] Length = 470 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 52/216 (24%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105 +++G H V A L R+I L N D D VP + DK I+ Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNE----DPDIVKLAMEKYGIVPKRLKDKNALNIL 211 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------------------------------- 133 K VH G+ L+T L P + V +++ Sbjct: 212 CKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKKVIR 271 Query: 134 ------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L + LD + DP N+G+ILRSA F D I+ + V K+++ Sbjct: 272 DDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASA 331 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GAL+ I + + + + G+ I D + Sbjct: 332 GALDLIDIYQTGSSLKFIDSVRQNGWHVISTVVDQQ 367 >gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 253 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + Q LM LD + DP N+G ++R+A A +I + + + ++ G+ H+ + Sbjct: 106 SGQFLM-LDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIV 164 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETAT 249 + L ++ + G G + K + I+ + + L++G EG G+ P + Sbjct: 165 S-AKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTD 223 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + G ++LNV+ AAA+ ++ Sbjct: 224 TNLYIPIRGQAESLNVAVAAAIMMF 248 >gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] Length = 175 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L A L +D + +Q ++++LD + HNIG++ R++ AF + I + Sbjct: 4 LANAELERKNIDEFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKI 229 + + K+A GA E + + ++ + + ++ + + + + + N K Sbjct: 64 NKEIHKTALGATETVTWEYAKDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKY 123 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALI G E KG+ + + + + G +LN+S +A + ++ Sbjct: 124 ALIFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIW 168 >gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA + ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Danio rerio] Length = 580 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S LL+V ++ P N+G + R+ F ++ ++ A S S L +P + Sbjct: 423 TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 481 Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + L+D LQ S G+ IG+ S + L+ +K L+LG E +G+ + Sbjct: 482 EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 541 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + G+ ++LNV +AA+ ++ T+ H Sbjct: 542 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 574 >gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ + + S + ++ GA + ++L Sbjct: 115 VVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYPQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L + F T L + + L E A + G EG G+ + A + Sbjct: 175 EIWLARYEDRVFAT-ALREEKQTVLYGEDLCKPTAWVFGNEGAGVGKAVLDRADKCVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA V L+ Sbjct: 234 MHDATESLNVAMAATVCLF 252 >gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 274 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 28/259 (10%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81 R++ K+++ Q S + L+L G H AAL PS +F A A Sbjct: 12 RDNAFVKELRRLAQDSTAYRRQGRLWLEGEHLCRAALARQLRPSIAVFAESFWPQAQAEY 71 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLD-----AVRNSQLL 135 DA+ +V E + G+ ALE+ + LD +++ Sbjct: 72 AQDAS---------------KIMVLAEPLFAGISALESPARMGFILDLPAPASLQPGAAT 116 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA AF ++ K + S + ++ GA + I + Sbjct: 117 VVLDRVQDAGNMGSILRSAAAFGFRQVLALKGSAALWSPKVLRAGMGAHFALNLIEAAGP 176 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + LQ + + S + + L + A I+G EG+G+ P A + Sbjct: 177 AE-LQALQ---LPMLVTSPHAGEYLHRATLPWPCAWIMGHEGQGVTPALTAKAALRIRIA 232 Query: 256 MPGIIKALNVSNAAAVALY 274 PG ++LNV+ AAA+ L+ Sbjct: 233 QPGGQESLNVAAAAAICLH 251 >gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W] gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11] Length = 229 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] Length = 180 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++L ++ N+G++ RSA A + II + + +AK+A GA + + + + Sbjct: 28 LVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDTVVWEYHA 87 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251 + +A+ M G + GL ++ +P D I L++G E GL + ++ + Sbjct: 88 DPLEAVCSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVVGNEVDGLENEILDSCDDV 147 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + G +LNV+ AA +AL+ Sbjct: 148 LEIPQYGTKHSLNVAVAAGIALF 170 >gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 177 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++L+ + +NIG+ R+A AF+ + + + + K+A GA E I + Sbjct: 26 LIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDWEYRQ 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 ++ + ++ G + + L EI K+ + AL+ G E G+ +++ Sbjct: 86 DINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVDQSVIDSSNY 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS A + L+ FAK Sbjct: 146 IIEIPQFGTKHSLNVSVCAGIVLW----EFAK 173 >gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] Length = 265 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/145 (20%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD + DP N+G I+R+A + + II K + + +S G++ + Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNI 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I S + + + S F + ++ ++ K+AL++G E G+ + + Sbjct: 175 INASQ-DETVDMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + + G ++LN + ++A+ +Y Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258 >gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 167 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V D++++ NIG++ R A AF + +I + S + K++ +++ + Sbjct: 17 ITLVCDNISNAPNIGSLFRIADAFGIEELIFCGK-DVSLGKRMTKTSRSTEKYVTHKIEE 75 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS 250 N+ D + ++ + I L + + + L Q N K IA+ILG E G+ + Sbjct: 76 NIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQPIAVILGDENFGVSDDIINLCDA 135 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + H++M G ++NV A ++ LY Sbjct: 136 VIHINMYGNNSSMNVVQATSITLY 159 >gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 409 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 36/151 (23%) Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ LDHV DP N+GAI+RSA V SCD S +A +A++++G +EH+ Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246 Query: 188 PYIR-----ISNLTDALQKMHSWG-------FQTI-----GLSSDSKKPLEQEIKND--- 227 R + L + + + + G + I + ++P E+ K Sbjct: 247 AVYRSVVPTTTFLENTIAQHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPM 306 Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMP 257 + L+LG E KGL P+ + H+ P Sbjct: 307 RRRLLLLGNEDKGLPPEVVRLCSHAVHIPSP 337 >gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ + + S + ++ GA + ++L Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L F T L + + L E A + G EG G+ E A + Sbjct: 175 EIWLAHYEDRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLERADKCVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 234 MNDATESLNVAMAATICLF 252 >gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 293 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + + LD V DP N+G ++R+A A S G+I + S ++ G++ +P Sbjct: 134 KGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVFSMPL 193 Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244 ++S D L +W G + + + K ++ N + L++G E +GL Sbjct: 194 YKVSE-ADFL----NWRKGVSGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSL 248 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + G +LN++ A V LY Sbjct: 249 AGACDKLARIPQAGRADSLNLAIATGVMLY 278 >gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413] gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413] Length = 260 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ L+ + DP N+G I+R+A A G+ ++ ++ + ++++G + Sbjct: 111 VVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLATAVSE 170 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252 +L +Q G Q + + + K EI K +LI LG EG GL P A Sbjct: 171 DLKATVQLCQQAGMQVVA-TLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMADQEV 229 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++LNV+ +A+ LY Q Sbjct: 230 KIPLSPGVESLNVAITSALMLYEVQRQL 257 >gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] Length = 396 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 58/216 (26%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK--- 103 +++G H V A L R+I L N + +L + +P + DK Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEK-------YGIIPKRLKDKNAL 208 Query: 104 -IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----------------------------- 133 I+ K VH G+ L+T L P + V +++ Sbjct: 209 NILCKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKK 268 Query: 134 ---------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + LD + DP N+G+ILRSA F D I+ + V K Sbjct: 269 VIRDDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANK 328 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +++GAL+ I + + + + G+ I S Sbjct: 329 ASAGALDLIDIYQTGSSLKFIDSVRQNGWHVISTSG 364 >gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] Length = 168 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF + + + + K+A G + + + + Sbjct: 17 LVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVDWRYFA 76 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 + T A++ + G+ + Q + D + A++ G E KG+ T + Sbjct: 77 SATQAVEDLRERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGVHQDTVDACDG 136 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 137 CLEIPQFGTKHSLNVSVTAGIVVW 160 >gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] Length = 220 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +V+ +V HNIG + RSA AF +I + + + + G+ H+ + Sbjct: 2 ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L +A + G G+ ++ + + A +LG EG GL PK E Sbjct: 57 HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116 Query: 252 AHLHMPGIIKA-LNVSNAAAVALY 274 ++ G A LNV+ AA++ L+ Sbjct: 117 TYIPQVGCGTASLNVTVAASIVLH 140 >gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18] gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 261 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DP N+G +LRSA A ++ + + + S + ++ GA + ++L Sbjct: 116 VLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L F T L + + L E + A + G EG G+ + A + M Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234 Query: 257 PGIIKALNVSNAAAVALY 274 ++LNV+ AA + L+ Sbjct: 235 HDATESLNVAMAATICLF 252 >gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 229 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + +VL+ + PHN A+LRS F + + R + S+ +A SG L+ Sbjct: 33 RTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFTISSGVALGTSGWLDIHR 92 Query: 189 YIR--ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKT 244 Y N A+ ++ + G++ + S ++ LE +I K A + G E +G+ + Sbjct: 93 YREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLFGNELEGVSQEA 152 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +++ N+S + A+ L+ Sbjct: 153 MALADEFMKIPMRGFVESFNISVSCAIVLH 182 >gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 260 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/144 (21%), Positives = 61/144 (42%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + ++ + DP N+G ++R+A A +G++ + E+ + ++ +G +P + Sbjct: 112 LAVETLQDPGNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDF 171 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 LQ G Q + ++ +LG EG GL A + Sbjct: 172 QAELQHYRQQGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIP 231 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ AAA+ LY Q Sbjct: 232 LQPGVESLNVAIAAALLLYEAQRQ 255 >gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145] gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145] Length = 230 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L +V++ V+ HN+ A++R+A A + + S+ V +A G+ + Sbjct: 14 AFRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEMHAI--WLSSKMRVSGGTALGSQNWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 S L+ A++++ G Q + SD + A++LG E G + + Sbjct: 72 NVHHHSQLSPAVEQIKQQGMQVVVTHLSDQAVDFREIDYTQPTAILLGQEKHGATEEALK 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A AV LY Q Sbjct: 132 IADHHVKIPMVGMVQSLNVSVAGAVMLYEAQ 162 >gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140] Length = 261 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V DP N+G +LRSA A ++ + + + S + ++ GA + ++L Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYLQADLE 175 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L F T L + + L E + A + G EG G+ + A + M Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234 Query: 257 PGIIKALNVSNAAAVALY 274 ++LNV+ AA + L+ Sbjct: 235 HDATESLNVAMAATICLF 252 >gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 237 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 27/158 (17%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEH 186 R + ++ + V+DPHN A+LR+A AF + +P + L + L+ Sbjct: 45 RTRYITVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTRHADKWLTLQQ 104 Query: 187 IPYIRISNLTDALQKMHSWGFQ---------TIGLSS-DSKKPLEQEIKNDKIALILGAE 236 P ++ ++++ + G+Q T+ L D +P AL+ G E Sbjct: 105 KP-----DIVTTIKELQAKGYQVYASYLGEGTLRLGDIDVSRP---------TALLFGNE 150 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + A + + M G +++ N+S AAA+ALY Sbjct: 151 HSGVSQEAIRAADATFMIPMYGFVQSFNISVAAALALY 188 >gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1] Length = 549 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 15/147 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ DPHN+G+I+R+A+AF D I + +A K+++G H+ R + Sbjct: 392 LVVVAAQDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKASAG---HVFAGRFLSP 448 Query: 196 TDALQKMHS----------W-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 T+ L+ S W + SS S + LE + L+LG E +G+ P+ Sbjct: 449 TEVLRAARSTASEVAPSTLWTAAEAHAPSSWSHRQLEDVAWPHRRVLVLGHETRGV-PRD 507 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAV 271 + H+ + +++L+V+ AAA+ Sbjct: 508 LQPFCQPVHIAIHPGVESLSVAAAAAI 534 >gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 294 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 13/189 (6%) Query: 91 FPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P V P + K +GK +HQ L T L P + S ++LD V D N+G Sbjct: 103 LPADIVQPVS-GKALGKITQLHQAEDLMTLIALPPPV--APESPDYVLLDRVQDAGNVGT 159 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRISNLTDALQKMHSWGF 207 +LRSA A I+ + + + S + ++ GA L HI R+ LT+ + + Sbjct: 160 VLRSAAAAGIRQIVLGEGCADAYSPKVLRAGMGAHFLLHIQE-RVC-LTEWCARYPHAVY 217 Query: 208 QTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T + D +P L Q A I G EG G+ P+ A + M G ++LN+ Sbjct: 218 AT---ALDGNRPALLYQLDLRAPCAWIFGNEGSGVSPELIALAGRSVKIPMQGATESLNI 274 Query: 266 SNAAAVALY 274 + AA V L+ Sbjct: 275 AQAATVCLF 283 >gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 262 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+A P SP + A + ++ D + DP N+G +LR+ A + + + Sbjct: 92 QGVAFLVTPP-SPEMPAEVDENCVL-FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAA 149 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 SA + +S GA + +LT L ++ + + D + L + + A Sbjct: 150 WSAKVLRSGQGAHFALAIHEHIDLTALLPRLR---VPLVATALDGARNLYEGRLPARCAW 206 Query: 232 ILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274 + G EG+G+ P + A+ + H +++LNV AAA+ L+ Sbjct: 207 VFGHEGQGVDPVLLDAASHKVCIPHDMAAVESLNVGAAAAICLF 250 >gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 177 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-----GIITTKRYSPSESAVLAKSASGALEHIP 188 +++VLD+V HN+G+ R++ AF+ + GI T + E L ++S EH P Sbjct: 25 VVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTALGATSSVDWEHAP 84 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245 +L L + G+Q + + + + + + K A + G E G+ + Sbjct: 85 -----DLISRLNALKDEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFGNEVHGVDEEIM 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 + + + G + N+S + L ++ +N F Sbjct: 140 KISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRF 176 >gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13] gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13] Length = 243 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 22/162 (13%) Query: 136 MVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 VL H + P NIG+ R+ + F+ +I +++ ++ LA A L+H + Sbjct: 13 FVLSHTSHPGNIGSTARAIKTMGFAQLSLINPEKFPHEDADALASGAKDLLQH------A 66 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGL 240 + +L+++ + IG ++ K+ L QE +KN+K AL+ G E GL Sbjct: 67 QVASSLEEVTADCNVLIGFTA-RKRELTQEHLSIEEIAQKIIELKNNKFALLFGNETSGL 125 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + +A++ +LN+S A V Y + +F K Sbjct: 126 KNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNK 167 >gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354] gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase TARBP1-like [Callithrix jacchus] Length = 1626 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1467 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQYLSVS-AEQWLPLVE 1525 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + LT LQ+ + G+ IG+ ++ L Q +K L+LG E +G+ + Sbjct: 1526 VKPPQLTAYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1585 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1586 DVCVEIPQQGIIRSLNVHVSGALLIW 1611 >gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 301] gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046] gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227] gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str. 8401] gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11] gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1] gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str. REL606] gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933] gi|147866|gb|AAB00161.1| spoU [Escherichia coli] gi|290501|gb|AAA62004.1| spoU [Escherichia coli] gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai] gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301] gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T] gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046] gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227] gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401] gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli] gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli] gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli] gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli] gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli] gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)] gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017] gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC H10407] gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC 796-83] gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B] gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14] gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G] gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68] gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180] gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120] gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007] gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253] gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167] gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ECD227] gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1125] gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88] gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2747-71] gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6] gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272] gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] Length = 249 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186 R + + L+++ PHN A+LRSA A + + ++PS+ + + +L Sbjct: 35 RTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH- 93 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244 R + A+ ++ G++ I + + P+++ ++ K A G E GL Sbjct: 94 ----RYRDPRMAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAV 149 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G +++LN+S A + L+ Sbjct: 150 LEAADEYLTIPMYGFVESLNISVTAGIVLH 179 >gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] Length = 231 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 EA+ + E A + L A R S L + +++++DPHN A++RS A G+ + Sbjct: 23 EALRPFVTDERAARIDSVLSA-RLSGLTVAIENLHDPHNGAAVVRSVEAV---GLTSLHV 78 Query: 168 YSPSESAVLAKS-ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 P E + + A G+ + I +R T + + GF+ D++ ++ + Sbjct: 79 AEPIERFQFSPAVAIGSEKWIRVLRHQGFTACARILRGAGFRMYAACPDAEMSMDDIDVS 138 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++ G E +GL + + + + M G ++LN+S + AV+++ Sbjct: 139 QPSAVVFGNEHEGLSRRAIDACDAKVAIPMHGFTQSLNLSVSVAVSIF 186 >gi|332289500|ref|YP_004420352.1| putative methyltransferase [Gallibacterium anatis UMN179] gi|330432396|gb|AEC17455.1| putative methyltransferase [Gallibacterium anatis UMN179] Length = 357 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 111 HQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H G+ L + PL L L+ + ++VLD + + NIG +L++ + ++T K Sbjct: 189 HGGICLLVKKRPPLMLKSYLETPKKRDCIVVLDGIGNAANIGGVLKTLAFYGVQNVVTDK 248 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225 +S + A G +E++ +++ T AL + G+Q I S S L + Sbjct: 249 -IDAVQSPAAMRVAEGGIEYLRLFEVAHPTLALDLLKQAGYQLIRASLSKQAIALNKLEL 307 Query: 226 NDKIALILGAEG-KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 DK+A++L K L P+ A S + G LNV+ A V L Sbjct: 308 QDKVAIVLSENTIKDLDPEVTNVALSTTNPLATG----LNVAVTAGVLL 352 >gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 221 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186 A R + ++ + HN A++R+ F I K+Y + +K A GA + Sbjct: 28 AQRTQYFTVAIEDIFQMHNTSAVVRTCEVFGVQTTHIIEKKYGKR---LDSKIAMGAEKW 84 Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R SN ++++ G++ + + + S PLE + K A G E GL + Sbjct: 85 VTIKRYSNTQSCIEELKLQGYRIVATVPAPSAIPLEHFNIDAKSAFFFGTERDGLSQEVI 144 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + M G ++LN+S + A+ L N K Sbjct: 145 SQADEFLTIPMVGFTESLNISVSVAIILQYLTNKLRK 181 >gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86] gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] Length = 229 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 206 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 30/175 (17%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ R+ AF + + +A + K+A G + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTALGGEDSVDWRYFE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------------------------ 229 DA+Q++H G+ + E+ N K Sbjct: 85 KTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAVDTAIENRQSESIF 144 Query: 230 --ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+I G E KG++ + + + G +LNVS A + ++ FAK Sbjct: 145 PCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVW----EFAK 195 >gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus] Length = 1468 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ + + S S A + +P + Sbjct: 1309 SRLIVVASLIDKPTNLGGLCRTCEVFGALVLVVGSLHCVKDKQFQHLSVS-AEQWLPLVE 1367 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ IG+ +K L Q +K L+LG E +G+ + Sbjct: 1368 VKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1427 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1428 DVCVEIPQQGIIRSLNVHVSGALLIW 1453 >gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 178 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++LD++ +NIG++ R++ AF I + + K+A GA + + + + Sbjct: 26 LILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGATQTVDWAYVE 85 Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N + ++ + G + + + S S K +N AL+LG E KG++ + + + Sbjct: 86 NTLEVVKDLQQQGVKVMSIEQAEDSISLKDFNPR-QNQLYALVLGHEVKGVQQEVVDQSD 144 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S + ++ Sbjct: 145 GVLEIPQLGTKHSLNISVTTGICVW 169 >gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] Length = 178 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V D N+G +LRSA A ++ + + S + ++ GA + N Sbjct: 31 CIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMGAHFALTLHERVN 90 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L D L T ++ E +++ A I G EG G+ P A + + Sbjct: 91 LRDWLAGYPHRTLATALTEHNNFSLYELDLRPPS-AWIFGNEGSGVSPDILAAADATVKI 149 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LN++ AA + L+ Sbjct: 150 PMQGAVESLNIAQAATICLF 169 >gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR] Length = 226 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+++V+ HN+ A++RSA A G+ ++ A L S AL + Sbjct: 16 RQPDLTVVMENVHKNHNLSAVVRSADAI---GVHEMHAIWLTKKARL--SGGTALGSQNW 70 Query: 190 IRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 ++I N + +AL+ G Q + +E+ K A++LG E G+ + Sbjct: 71 VKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS A AV LY Q Sbjct: 131 DIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQ 162 >gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR] Length = 215 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEH 186 R L +V+++V+ HN+ A++RSA A I TK+ S L Sbjct: 5 RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEMHAIWLTKKARLSGGTALGSQ------- 57 Query: 187 IPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242 +++I N + +AL+ G Q + +E+ K A++LG E G+ Sbjct: 58 -NWVKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTD 116 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A + M G++++LNVS A AV LY Q Sbjct: 117 EALDIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQ 151 >gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 250 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P A++A GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNP--KAIMA--GMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL + LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 266 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185 R L+ L V DP NIG+ILR+A A +I + Y P+ ++ +GA Sbjct: 114 REGLCLLALKAVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNS----VRAGAGATF 169 Query: 186 HIPYIRISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLR 241 + I+ S +++ W Q + + PL N L++G+E +GL Sbjct: 170 TVKLIKTS-----FERLLDWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLD 224 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q + + + M G + +LN++ A +V LY Sbjct: 225 LREQSSCDMLVSVPMVGKVDSLNLAVATSVILY 257 >gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 257 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 13/184 (7%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +TV PQ I + V AL P +L+ VL ++ DP N G +LR Sbjct: 80 ETVSPQGIVAVCDTVTVDLSAALTGRP------------RLVAVLVNIADPGNAGTVLRV 127 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D +I + ++++G+L H+P + ++ L + G T+ Sbjct: 128 ADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLPVVAEPDVHRVLDACVAAGLTTVAAH 187 Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ L + D A + G E GL A + + G ++LN++ AAAV Sbjct: 188 GYAEADLTTAEQLDGPTAWLFGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLATAAAVC 247 Query: 273 LYIT 276 LY T Sbjct: 248 LYTT 251 >gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 178 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++L ++ N+G++ RSA A + II + + + K+A GA +P+ Sbjct: 26 VILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGADASMPWEYTD 85 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM 251 N L+ + G + GL L E+K + L++G E +G+ + Sbjct: 86 NPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLVGNEVQGIEDNLLAQCDLV 145 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + GI +LNVS AA V L+ Sbjct: 146 LEIPQFGIKHSLNVSVAAGVVLF 168 >gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] Length = 200 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P A++A GA Sbjct: 51 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNP--KAIMA--GMGAQFS 106 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL + LQ+ W T G+S +K E K L+ G E G Sbjct: 107 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 160 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 161 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 192 >gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894] Length = 347 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LDA+ L++V +++ N G++ R+A AF D ++ + + + G++ Sbjct: 119 LDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVL 178 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +PY R D L + GF LS + + + ++AL++G EG+GL P+ Sbjct: 179 SVPYRRGGKALDVLLALAERGFAIWTLSPHGETDIRAIPASARMALVVGTEGEGL-PEAL 237 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI 275 A + + +LN + A +A Sbjct: 238 LARFQSARIPQSEELDSLNAATATGIAFVF 267 >gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] Length = 230 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + + S L +A+G+ + Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTSRMKTLVSTAAGSNSWVQV 73 Query: 190 IRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + DA + + + G Q + LS+D+ + + ++LG E G+ + Sbjct: 74 KTHRTIQDAARHLKTQGMQILATNLSADAVDFRDVDYTR-PTCILLGQEKTGISGEALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536] gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026] gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042] gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] Length = 229 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 253 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + DP N+G ++R+A A +I + + + ++ G+ H+ + + Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ + G G + K + I+ + + L++G EG G+ P + + + Sbjct: 168 LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTDTNLY 227 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AAA+ ++ Sbjct: 228 IPIRGQAESLNVAVAAAIMMF 248 >gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989] gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] Length = 229 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073] gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89] gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1] gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88] gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a] gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B] gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736] gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82] gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15] gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034] gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU 83972] gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146] gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252] gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263] gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] Length = 229 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 178 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++LD+V +NIG++ RSA AF I + + K+A GA + + + + Sbjct: 27 IIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATDTVTWEYVE 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 N ++K+ + G + + + + K+ A++ G E KG++ + + + Sbjct: 87 NTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGNEVKGVQQEVVSASDA 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S + V L+ Sbjct: 147 VIEIPQLGSKHSLNISVSTGVVLW 170 >gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 292 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 30/179 (16%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175 P LS LD +L+ VL + DP N G ILR+A A D +I TK Y+P Sbjct: 113 PQLSEVLDT--KPKLIAVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKA--- 167 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------------------D 215 +S G+L H+P + + + G Q + Sbjct: 168 -VRSTVGSLFHLPVLNNVEFDHLIAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPG 226 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ P Q + + G EG+GL ++ A + + G+ ++LNV A+ V LY Sbjct: 227 TEAPEGQPVLEAPTLWLFGNEGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLY 285 >gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 166 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + ++ ++V + NIG++ R+A AF + II P + K++ + I Y Sbjct: 17 ITIICENVTNAPNIGSLFRTADAFGVEKIIFCGSKIPLGRK-MTKTSRTTEKFIKYQERE 75 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDK-IALILGAEGKGLRPKTQETATS 250 + + + ++ + + L +D+ KP+ + K IA+++G E G+ + + Sbjct: 76 TVEEVIIELKKSNYSILALEITDNSKPIHTFNVPTKKPIAIVIGDENFGISNTALKQTDA 135 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + H+ M G ++NV A VALY Sbjct: 136 IIHIDMFGQNSSMNVVQATTVALY 159 >gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] Length = 239 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%) Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ +R++ A + D II +K+ + ++ K++ GA PYI++ ++ ++ + F Sbjct: 107 GSCIRTSNALNIDLIILSKKCINKNNKIILKTSLGANLITPYIKVKSIKKIIKYLKKKNF 166 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + IG SK L I LI+G+E G+ ++ + + M G I LNVS Sbjct: 167 KIIGTWEKSKLNLFNFKFPKLIVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSV 226 Query: 268 AAAVALY 274 A + LY Sbjct: 227 ATGIFLY 233 >gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] Length = 264 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+++ + NIG ILRSA A I+ +K + S + ++A GA H ++I Sbjct: 115 VVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLRAAMGA--HF-LLKIHER 171 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDK-IALILGAEGKGLRPKTQETATSM 251 D L S+ + + K ++++ K +A + G EG G+ A + Sbjct: 172 VDLLDWRESFSGDVLATALTEKNNFSLYDKQLDLTKPVAWVFGNEGSGVSADMLAQANAT 231 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV+ AA + L+ Sbjct: 232 VKIPMIGATESLNVAMAATICLF 254 >gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] Length = 264 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 19/149 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIR 191 ++L + DP N+G ILR+A AF DG+I + Y+P VL S G + Sbjct: 121 LLLSSLQDPGNVGTILRTAAAFGTDGVILSADCPDLYAPK---VLRASMGGVFRARACVS 177 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQ 245 +L+ ++ + + G + P E + I A+++G EG G+ P+ Sbjct: 178 -DDLSASIAALRAAGVPVW-----AAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELA 231 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M ++LN + AA V L+ Sbjct: 232 ALCDGALTIPMEPGCESLNAAMAAGVILW 260 >gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 253 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + DP N+G ++R+A A +I + + + ++ G+ H+ + + Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ + G G + K + I+ + + L++G EG G+ P + + + Sbjct: 168 LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTDTNLY 227 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AAA+ ++ Sbjct: 228 IPIRGQAESLNVAVAAAIMMF 248 >gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3] gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1] gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3] gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2] Length = 218 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] Length = 260 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190 L++VL + P N+GAILR+A D ++ + +SP + ++++GA+ +P Sbjct: 110 LVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQ----VIRNSTGAVFALPVY 165 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ +A + + + + + ++ + +A +LGAE KGL + A Sbjct: 166 PVAE-GEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQV 224 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ AA+ LY Sbjct: 225 RVRIPMRGRADSLNVAVTAALLLY 248 >gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 276 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 21/158 (13%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180 T A +S L++ LD V DP N+G I+R A F I+ T Y+P V A Sbjct: 112 TASAAWDSSLILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNP--KTVQATMG 169 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 S A I Y +S ++L G D EQ + + + +I+G EGKG+ Sbjct: 170 SIARTKIVYTDLSAYLESLPNETP----VYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGI 224 Query: 241 RPKTQETATSMAH-LHMPGIIK------ALNVSNAAAV 271 ++E + H L +PG K +LNV+ A A+ Sbjct: 225 ---SKEITRHINHRLFIPGYPKDRPSAESLNVAIATAI 259 >gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39] gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] Length = 229 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|157864216|ref|XP_001680820.1| hypothetical protein [Leishmania major strain Friedlin] gi|68124112|emb|CAJ02095.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 545 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+H+ DP NIG ILR+A F D +I +++ + S +A ++++++G LEH+ + S Sbjct: 253 VLFLEHIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHLRVYQAST 311 Query: 195 LTDALQK 201 + A + Sbjct: 312 SSTAFLR 318 >gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1] gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3] Length = 218 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS] gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS] Length = 261 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 24/259 (9%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDW 83 R++ K ++ Q + ++L G H AAL + + A A +W Sbjct: 13 RDNPLLKDLRKLAQDPGAYRKLGRIWLEGDHLCRAALARGVKPAIAVFAESFWPTAPAEW 72 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVL 138 A+ +KTV +V + + LE+ + LD +L+ +VL Sbjct: 73 GAS-----AIKTV-------VVADDLLRGVSGLESPAPMGFVLDQPVRPELIPDAPSVVL 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-TD 197 D + D N G+ILRSA AF +I K + + + ++ GA H I + D Sbjct: 121 DRLQDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGMGA--HFGLRLIEGVEAD 178 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL + + SS + L Q A ++G EG+G+ + AT + P Sbjct: 179 ALDALK---IPLVATSSHRGEWLHQARLPHPCAWLMGHEGQGVSAALEARATHHIRIAQP 235 Query: 258 GIIKALNVSNAAAVALYIT 276 G ++LNV+ AAA+ L+ + Sbjct: 236 GGEESLNVAAAAAICLHAS 254 >gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] Length = 260 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R ++ +VLD V D N+G+ILRSA A + + + S+ + +S GA H Sbjct: 110 RVTETSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGA--HF-L 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + I DA + S + + + +A + G EG G+ + AT Sbjct: 167 LSIHEDVDAGELSGRLAVPIALTDSHGAQAVYDCDLSAPVAWVFGNEGAGVSAFWCDAAT 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAAV L+ Sbjct: 227 HRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 286 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 12/156 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + + + LD V DP N+G I+R+A A GII + S ++ G++ +P Sbjct: 130 DGETWVALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVA 189 Query: 191 RISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 190 RATP-----EEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 243 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++A + G +LN++ A AV L+ + H Sbjct: 244 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279 >gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 250 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 10/233 (4%) Query: 48 NLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LFL G + V AAL S + ++ AT A+ R +L PV+ V + K + Sbjct: 17 GLFLAEGPNLVEAALR--SGAVERIFATDAAIERF---VDLLAEAPVRRVTERAA-KALS 70 Query: 107 KEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 GL + ++S + R+ + ++V +++P N G ++R A A D ++ Sbjct: 71 DTVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAMGADAVVLA 130 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-- 223 + ++++G++ +IP + ++ + G + + D L++ Sbjct: 131 GNSVDPFNGKSLRASAGSIFNIPVVPEGDVGAIAADLAQTGVALLATTLDGDLSLDEADA 190 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A G E GL T AT ++ M G ++LN+++AA++ LY T Sbjct: 191 VLAGPCAWFFGNEAHGLDGATAALATHRINIPMRGGAESLNLASAASICLYAT 243 >gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4] gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4] Length = 260 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 47/271 (17%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83 R++ YK++++ + + + L G H A L+ + I +L +AT+ ALA + Sbjct: 7 RDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGA--IPELCVATEGALAHAEA 64 Query: 84 DA-----NLPHPFPVKTVPPQTIDKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRN 131 A + P V T+P D + G+ + V G+ L PL + R Sbjct: 65 QAIVARIDAPR---VVTLP----DALFGQLSNVVSGVGLLLLVERPAQPLPA------RV 111 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VLD V D N+G+ILRSA A + + + S+ + +S GA + I Sbjct: 112 TDTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGA-HFLLSIH 170 Query: 192 ISNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 DAL + S G Q + D P +A + G EG G+ Sbjct: 171 EDVEPDALAERLDVPVALTDSHGAQAV-YDCDLSGP---------VAWVFGNEGAGVSAF 220 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ AT + PG +++LNV+ AAAV L+ Sbjct: 221 WRDAATHRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8] gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans A8] Length = 262 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+A + P + DAV + +L D + DP N+G +LR+ A + + + Sbjct: 92 QGVAFQVTPPVLDLPDAVDENCVL--FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAA 149 Query: 172 ESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + +S G AL ++ ++ L LQ + + D + L + + + Sbjct: 150 WSPKVLRSGQGAHFALAIHEHVDLAALLPRLQ------IPLVATALDGARDLYEGVLPQR 203 Query: 229 IALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274 A + G EG+G+ + A + H +++LNV AAA+ L+ Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKVRIPHDMAAVESLNVGAAAAICLF 250 >gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 253 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 47/266 (17%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++KK+ + +K R + L G+H V AL ++K+ +LL T + L+ + + Sbjct: 12 KEWKKLNT--KKGR--KKQNKYILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V + + + K + + QG+ ++E + P D ++LD V D Sbjct: 65 PDETKVIMISKE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119 Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189 P NIG ++R+A A G+I + Y+P V+ + SG + H Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKD 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L + H+ + +G +D AL++G EG G+ + E + Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGISKEILEMTS 225 Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274 +L++P ++LNV+ AA + ++ Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249 >gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] Length = 266 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ V P N+GA+LR+ DG+I Y+P+ + +S+ G + +P + Sbjct: 119 LIIEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPN----VIRSSLGTVFTLP-VL 173 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATS 250 ++L + LQ + ++ S +KK +E A++ G+E GL +P E Sbjct: 174 CASLPEVLQLIRKESWEVYVTSPRAKKLYFEETFLAPTAIVFGSEKDGLMQPWFHERFKE 233 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + L M G +LN+S + A Y Sbjct: 234 IT-LPMRGKADSLNLSTSVAAIAY 256 >gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240355] Length = 261 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ + + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 253 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V V P+ + + ++ Q LAL P + +RNS L + LD + DP N+G I+R Sbjct: 65 VIEVGPEDLSRASLLKSPQQVLALFEQPKYEIDTEVIRNS-LCLALDDIQDPGNLGTIIR 123 Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A F + I T ++P A+ A A + YI + L L + + Sbjct: 124 LADWFGIEHIFCSPNTVDVFNP--KAIQATMGGIARVKVHYIALPELIHVLGNVPVY--- 178 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKA 262 G D K EQ + + I +++G EG G+ + ++ L++P ++ Sbjct: 179 --GTFLDGKNMYEQPLSKNGI-IVMGNEGNGIGAEVEKLVNR--KLYIPNYPQERETSES 233 Query: 263 LNVSNAAAVA 272 LNV+ A A+ Sbjct: 234 LNVAIATAIV 243 >gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 271 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 112 QGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QGL + A ++ D + S +L+ VL +DP N G ++R A A DG+I + Sbjct: 94 QGLVVRCALPMTSVADLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAGADGVIVAGEAAD 153 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKN 226 +A ++++G++ H+P + + + ++ + G + + + L + I + Sbjct: 154 PWNAKAIRASAGSVFHLPVVPARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILD 213 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G+E GL + A + + G ++LN++ AAAV LY Sbjct: 214 LPTAWLFGSEAHGLPAEIIGRADERIRIPIYGRAESLNLAAAAAVCLY 261 >gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] Length = 253 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 117/253 (46%), Gaps = 21/253 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++KK+ + +K R + L G+H V AL ++K+ +LL T + L+ + + Sbjct: 12 KEWKKLNT--KKGR--KKQNKYILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V + + + K + + QG+ ++E + P D ++LD V D Sbjct: 65 PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG ++R+A A G+I + + + + ++ G+ HI I NL+ ++ Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVIN-DNLSGWIRHFK 178 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IK 261 G ++ + ++ AL++G EG G+ + E + +L++P + Sbjct: 179 DMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTS--INLYIPITNAE 236 Query: 262 ALNVSNAAAVALY 274 +LNV+ AA + ++ Sbjct: 237 SLNVAVAAGILMF 249 >gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863] gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v] Length = 229 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1] Length = 218 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] Length = 218 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] Length = 218 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 3 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 61 QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153 >gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 242 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 7/128 (5%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ET P S +++L++ LD V DP N+G I+R A F + I ++ + + + Sbjct: 77 ETPPAYSDIFRQYLDNRLVLALDGVQDPGNLGTIIRIADWFGIENIFCSQETADCWNPKV 136 Query: 177 AKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G++ + Y+ ++ LT+ L + + S + PL ++ +++G Sbjct: 137 VQATMGSIARVKLHYLNLNRLTEGLPADYPVYATLLDGDSLYEYPLSKQ-----GMIVMG 191 Query: 235 AEGKGLRP 242 EG G+ P Sbjct: 192 NEGNGITP 199 >gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 256 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 K + + A QG+ A P + R ++ ++ LD V DP N+G I+R+A F + Sbjct: 73 KRLAQTASPQGV---CAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAE 129 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I + +A +S +G++ + I + +L L+++ + GF + D + Sbjct: 130 AVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTVAAAALDGQDYR 189 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271 D+ AL++G E G+ K A S + H +++LN S +A + Sbjct: 190 SFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVSAGI 243 >gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] Length = 200 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 8/151 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI 187 R L + +D+V PHN+ AI+R +CD + K Y + V + GA + + Sbjct: 19 RQDTLRVFMDYVYSPHNLSAIVR-----TCDAVNVGKLYYRHQKKVKLNNEITMGAHKWL 73 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQE 246 + ++ + + + G+Q + D +E+ K LI LG E G + + Sbjct: 74 FTEYVEDIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIK 133 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G+ ++LNVS A AV LY Q Sbjct: 134 YADKKVIIPMYGMSQSLNVSVANAVILYEAQ 164 >gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Danio rerio] Length = 191 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S LL+V ++ P N+G + R+ F ++ ++ A S S L +P + Sbjct: 34 TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 92 Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + L+D LQ S G+ IG+ S + L+ +K L+LG E +G+ + Sbjct: 93 EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 152 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + G+ ++LNV +AA+ ++ T+ H Sbjct: 153 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 185 >gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549] gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1] Length = 250 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 25/163 (15%) Query: 124 PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178 P L+ + S ++VLD + DP NIG ILR+A+A +I T ++P + Sbjct: 93 PKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IR 148 Query: 179 SASGALEHIPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIAL 231 + GA + + I+NL + LQ+ W T G+S +K E K L Sbjct: 149 AGMGAQFSLKFSYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSIL 202 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E G+ + T + L I++LNV+ AA + L+ Sbjct: 203 VFGEEANGIEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 171 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 9/157 (5%) Query: 125 TLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T + V N Q + +V D + P NIG R + +F + I + E+ + +A Sbjct: 5 THNDVENQQQKFPITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINTA 64 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEG 237 + I Y S +Q++ G IG+ K Q+ K +KI L+LG+E Sbjct: 65 RNTINQIEYQTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEKIVLLLGSER 124 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + M G ++NV ++ A+ LY Sbjct: 125 NGI--ENINLVDETIAIPMYGRNSSMNVIHSLAITLY 159 >gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771] Length = 343 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + LD V DP N+G I+R+A A G+I + S ++ G++ +P Sbjct: 48 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 107 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + I L++G E GL + Sbjct: 108 ARATP-----EEFLAWR-KSAGVSVVATHLAGAVDYRTIDYRKKPIVLLMGNEQSGLPEQ 161 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++A + G +LN++ A AV L+ Sbjct: 162 LAKEADALARIPQQGRADSLNLAVATAVMLF 192 >gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] Length = 227 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186 R + L +VL+ + P N A +R+ + S II T +Y+ + VL GA + Sbjct: 40 RTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVL-----GASKW 94 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 I I+ + A + G++ + S D+K LE + K+A+ G E GL Sbjct: 95 IDIIKYKCVKAAFDNLKGNGYKIVATSLDNKAISLEDFPIDAKLAIFFGTELTGLSHSVL 154 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G ++ N+S A A+ Y Sbjct: 155 ENADLHLKIPMYGFTQSYNLSVAVAIVFY 183 >gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa] Length = 1628 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ + + S S A + +P + Sbjct: 1469 SRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQCIRDKQFQHLSVS-AEQWLPLVE 1527 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ +G+ ++ L Q +K L+LG E +G+ + Sbjct: 1528 VKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLLLLGNEREGIPANLIQQL 1587 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1588 DVCVEIPQQGIIRSLNVHVSGALLIW 1613 >gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 261 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ + + S + ++ GA + ++L Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L F T L + + L E + A + G EG G+ + A + Sbjct: 175 EIWLASYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 234 MHDATESLNVAMAATICLF 252 >gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275] gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568] Length = 261 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ + + S + ++ GA + ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 4/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ HNIG ++R+A AF+ + R + + + H P Sbjct: 62 RRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHVHHHPD 121 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A + HS + ++ +P+E+ ++ L+ G EG GLR +++E A Sbjct: 122 L---ESLRAYAREHSLAVVAVD-NTQGSRPIERTALPERCVLLFGQEGPGLRDESREGAD 177 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G +++N AA + ++ Sbjct: 178 LVVSIAQFGSTRSINAGVAAGIVMH 202 >gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14] Length = 1716 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/150 (20%), Positives = 67/150 (44%), Gaps = 5/150 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++++++M ++ N+ + R+ F + ++ + + A +S A + I Sbjct: 1553 KSNRVIMCASLIDKVTNLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWIKM 1612 Query: 190 IRISNLTDALQKMHSWG----FQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKT 244 +IS + +H W + IGL S+ + + DK +ILG+EG G+ + Sbjct: 1613 EQISRGESLIDAIHHWKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPVEI 1672 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G++++LNV + A+ L+ Sbjct: 1673 LRLVDVCVEIPQFGLVRSLNVHVSGAILLW 1702 >gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 283 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P A+ S L +VLD V DP N+G I+R F ++ +K + + ++ G+ Sbjct: 130 PEAIAIDRSGLTVVLDDVRDPGNLGTIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGS 189 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L + I TD + + G D + + + + +++G E G+ Sbjct: 190 LTRVSII----YTDIDTYLSNEDRPVFGTFMDGENIYAASLPQEGV-IVMGNEANGISTS 244 Query: 244 TQETATSMAHLHMPGIIKA---LNVSNAAAVAL 273 +E T + GI +A LNV+ A A+ L Sbjct: 245 IEELVTKRIAIPRFGITQATESLNVATATAICL 277 >gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 213 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 16/151 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R L + +++ + NIG ++R+A AF+ D + I +R A++ + H Sbjct: 60 RRHPLHIAIENFENDMNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHH-- 117 Query: 189 YIRISNLTDALQKMHSWG----FQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPK 243 D + + SW Q + + + PLE ++ L+ G EG G+ P+ Sbjct: 118 --------DTIADLISWANEQDLQVLAIDNIPGSVPLETATLPERCLLLFGQEGPGVTPE 169 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ A + G +++N AA +A++ Sbjct: 170 AQDAAVMTLSIAQFGSTRSINAGVAAGIAMH 200 >gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio] Length = 241 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S LL+V ++ P N+G + R+ F ++ ++ A S S L +P + Sbjct: 84 TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 142 Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + L+D LQ S G+ IG+ S + L+ +K L+LG E +G+ + Sbjct: 143 EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 202 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + G+ ++LNV +AA+ ++ T+ H Sbjct: 203 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 235 >gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 235 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 5/148 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186 A R +++ + ++ V HN A++RS F + + ++Y + +A + ++ Sbjct: 46 AERTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAMGSQKWVDI 105 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245 Y N D L++ G++ I + + L ++ + KIAL G E GL + Sbjct: 106 HRYESTKNCMDTLKQN---GYKIIATTPHNDSCLLEDFEIEGKIALFFGTERNGLSEEVL 162 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A + M G ++LN+S +AA+ L Sbjct: 163 KNADGFLKIPMVGFTESLNISVSAAIIL 190 >gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510] gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510] Length = 254 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVL--AKSA 180 P +D R Q L +L + DP N+GA+LRSA +F I+ + + P L A +A Sbjct: 104 PAIDLSRPPQGLELLCALGDPSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNA 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 AL + R + + DA +++ G +D L + + LILG EG+G+ Sbjct: 164 QFALTLLRGPRWAAVNDAAGPLYA----LDGGGAD----LTRFDWPADMRLILGEEGQGV 215 Query: 241 RPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 A L +P G +++LN + A +VAL+ Sbjct: 216 -----PADCPAARLSVPTTGAVESLNATVAVSVALF 246 >gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 250 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL + LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 251 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 19/160 (11%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 E APL + + L V+ + DP N+GA+ RS++AF +I T+ Sbjct: 102 EIAPLTTAKAEG------LEVISPLGDPSNLGALARSSLAFGASKMILTEESCSPYHPKA 155 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234 K+++GAL +P +I D + + G S ++ K P KN +IA LG Sbjct: 156 IKASAGALLKLPLFKIGKFADFVSNNDQIYALDMKGESVANFKWP-----KNVRIA--LG 208 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG G S+A +++LN + A ++ALY Sbjct: 209 EEGPGFSGIKNLQRLSVATQS----VESLNATVAGSIALY 244 >gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289] gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289] Length = 205 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 31/172 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RSA AF + I + +A + K+A G + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFE 84 Query: 194 NLTDALQKMHSWGF------QTIG----------LSSDSKKPLEQEI------------- 224 +A++++H G Q G L + + + +EQ+ Sbjct: 85 RTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDCPAADTSHPTHPLH 144 Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + AL++G E KG++ + + + G +LNVS A + ++ Sbjct: 145 PRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 196 >gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] Length = 205 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 31/172 (18%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RSA AF + I + +A + K+A G + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFE 84 Query: 194 NLTDALQKMHSWGFQT----------------IGLSSDSKKPLEQEI------------- 224 +A++++H G I L + + + +EQ+ Sbjct: 85 RTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPREMEQDCPAADTSHSILPLH 144 Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + AL++G E KG++ + + + G +LNVS A + ++ Sbjct: 145 PKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 196 >gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] Length = 229 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] Length = 224 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187 R L ++ + V N+ AI+R+ CD GI P E + + + A H Sbjct: 16 RQPDLTVITEEVQKGRNLSAIIRT-----CDAVGIPEVHSVVPRE-GFTSYNGTAASAH- 68 Query: 188 PYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 ++ I + + AL+ + + G+Q + D +EI K AL++GAE G+ Sbjct: 69 KWVDIHHYSTALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLMGAEIWGVSEP 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +E T HL M G+I++ NVS A A L Q Sbjct: 129 ARELVTHTIHLPMVGMIESYNVSVACAGILLEAQ 162 >gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] Length = 263 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 65/148 (43%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L+ + DP N+G I+R+A A G+ + + + ++++G + Sbjct: 110 LALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSH 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL D +Q G Q + ++ Q + ++LG EG GL A Sbjct: 170 NLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDDLATMANIQVK 229 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++LNV+ +AA+ LY Q A Sbjct: 230 IPLSPQVESLNVAISAALILYEAQRQKA 257 >gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] Length = 249 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 +VLD V DP N+G I+R+A F II T + Y+P K+ + + ++ Sbjct: 108 LVLDDVQDPGNLGTIIRTAEWFGFRQIICSPHTVEVYNP-------KTVQATMGSLSRLK 160 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + TD + + G D K E + + +ILG EG+G+ P+ + T Sbjct: 161 VY-YTDLAPLLSNTPVPVFGAVLDGKSIYEGGWGTEGL-VILGNEGQGISPEIMKLITHP 218 Query: 252 AHLHMPGIIKALNVSNAAAV 271 + G ++LNV+ AA+ Sbjct: 219 VTIPRVGAAESLNVAICAAI 238 >gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis] Length = 236 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++ +V HNIG ++R+A AF +I R + A + G+ H+ + Sbjct: 4 FVIVHNVAKRHNIGTLVRTATAFGVSEVILVGRKDFN-----AFGSHGSTLHLNFRHFYT 58 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L A Q + G+ +D + + A +LG EG GL K E + Sbjct: 59 LQQAHQYLKDKDSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLSSKEMEICDYFVY 118 Query: 254 LHMPGIIKA-LNVSNAAAVALYITQNHFA 281 + G A LNV+ AA++ L+ HFA Sbjct: 119 ISQYGCGTASLNVTVAASIVLH----HFA 143 >gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87] gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87] Length = 268 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSAS 181 L+ N+ L++V + P NIGA+LR+A A + D ++ T Y+P+ + +S+ Sbjct: 112 LNFSHNNPLILVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPN----IIRSSV 167 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGK 238 G + I I ++ ++ + + I + + + + E K D A+++G E Sbjct: 168 GCV-FTNKIAIGTTSEIIKFLQH---KNIAIYAAALQASEIYTKIDFTKASAIVVGTEAT 223 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + +E AT + M G I ++NVS AA + ++ Sbjct: 224 GLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIF 259 >gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] Length = 175 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LD++ +NIGA+ R++ AF + I + + + K+A GA E + + Sbjct: 21 KKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGATESVTW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + ++ + + + + +K + K +K A++LG E KG++ + + Sbjct: 81 EYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYAIVLGNEVKGVQQEVVD 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G +LN+S A V ++ Sbjct: 141 AADVCIEIPQLGTKHSLNISVTAGVVIW 168 >gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] Length = 285 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L++ LD V DP N+G ++R+A+A + + + P + L SA AL +P Sbjct: 114 TARLVLALDGVQDPGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALA-LPLQ 172 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGK 238 R S T L ++ +T S++ + P Q L+LG EG Sbjct: 173 RGSRET-LLHQLGELAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGA 231 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL + + AT + +++LNV+ AAA Sbjct: 232 GLSGQLLQRATHRVTIPHSAAVESLNVAVAAA 263 >gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112] gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] Length = 250 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL + LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 79/151 (52%), Gaps = 7/151 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188 R + L + L+ V+ P+N+ A++R+A A G+ P+E L+ +++GA + Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHQIHAVWPNEQMRTLSHTSAGARNWVE 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246 ++ +A+ + G Q + +++ S+ ++ + A+I G+E G+ P+ + Sbjct: 73 VQTHNSTLEAVSHLKETGMQIL-VTNLSEHAIDFRAIDYTQPTAIIFGSEKSGISPQALQ 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADHDIVIPMVGMVQSLNVSVASALILYEAQ 162 >gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 277 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEHIP-Y 189 ++V++ V P N+G ILR+A +I + ++P+ + ++++GAL + Y Sbjct: 130 ILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPN----VIRASTGALFTLDVY 185 Query: 190 I-RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I + L+K H ++T+ ++ ++KK KIAL+ G+E GL + + Sbjct: 186 LGEIETIYGILKKNH---YRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARNHS 242 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 L M G +LN++ +A + +Y + + F K Sbjct: 243 DEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK 277 >gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 161 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V +N+GA R+A + + + ++K+A GA E +P+ + Sbjct: 11 VLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGAEETVPWEHGWDA 70 Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + + GFQ + ++ + L + ++ G E GL P+ A + Sbjct: 71 VEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFGHEVGGLLPELLALADVHMRI 130 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +LNV+ A V LY Sbjct: 131 PMRGEKTSLNVATAGGVVLY 150 >gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] Length = 178 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD+V N+GA R+A AF+ + I + + + K+A GA + + + Sbjct: 27 VVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTALGAELTVAWDYFAAT 86 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMA 252 TD + + + G+ + + E + K AL+ G E G+ + + A Sbjct: 87 TDCIAALRAQGYLIYVVEQVEGAVMLDEFRPRPGQKYALVFGNEVDGVAQEVVDAADGAI 146 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + G ++NVS A V L+ Sbjct: 147 EIPQAGTKHSVNVSVAGGVVLW 168 >gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)] Length = 278 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++L+ V D N+G +LR+A A II TK + + S ++ GA + I Sbjct: 133 CLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSPKTMRAGMGAQFG---LTIYE 189 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +A + + SS + + ++ N +A ++G EG+G+ + AT +A L Sbjct: 190 GIEADEVLSYLRLPVYATSSHTDNIIYKQNLNRPVAWVMGHEGQGVCEAIMKEATPVA-L 248 Query: 255 HMPGIIKALNVSNAAAVALYIT 276 P ++LNV+ A A+ +Y T Sbjct: 249 PQPNGQESLNVAIAGALCMYET 270 >gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] Length = 176 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ HN+G+ R++ AF + I + + K+A GA E + + ++ Sbjct: 25 VVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGATESVAWQHVA 84 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATS 250 +AL + G+ + + D LE+ + D K A + G E G+ + + A Sbjct: 85 TTEEALATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGNEVFGVDEEVVKQADV 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LN+S + V ++ ++F+K Sbjct: 145 CIEIPQFGTKHSLNISVSMGVVIW---DYFSK 173 >gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] Length = 288 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 11/146 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190 +L++ LD + DP N+G I+R A F +I ++ + + + ++ G++ H + Y+ Sbjct: 137 ELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMGSIAHVDVTYL 196 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG----LRPKTQE 246 + + DAL G D + +Q + I +I+G EG G LR + Sbjct: 197 NLCDFVDALPA----STPVYGTLLDGEDIYQQTLTATGI-IIMGNEGNGISKDLRARINH 251 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVA 272 +P ++LNV+ A A+A Sbjct: 252 ALLIPNFSTLPNKAESLNVAIATAIA 277 >gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 179 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/144 (19%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD++ +N+G++ R+A AF + + + + K+A GA + + + + Sbjct: 27 LIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATDAVAWEYVE 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATS 250 + Q++ G + + + + +K ++ A++ G E KG++ + + + Sbjct: 87 DSVALSQRLKEQGVKLCAIEQAEDAVMLDKFTPVKGERYAVVFGNEVKGVQQEIVSLSDT 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S +A V ++ Sbjct: 147 VLEIPQVGTKHSLNISVSAGVVIW 170 >gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC 17616] gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC 17616] gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 260 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 43/269 (15%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + I +L +AT+ AL + Sbjct: 7 RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64 Query: 84 DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRNS 132 A V + Q I D + G+ + V G+ + PL + R + Sbjct: 65 QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPA------RVA 112 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LE 185 +VLD V D N+G+ILRSA A + + + S+ + ++ GA + Sbjct: 113 HTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHED 172 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P + L + S G Q I D +P +A + G EG G+ + Sbjct: 173 VAPDALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWR 222 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + PG +++LNV+ AAAV L+ Sbjct: 223 DIAAHRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] Length = 230 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + + + L +A+G+ + Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMKTLVSTAAGSNSWVQV 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 ++ DA+ + S G Q + + + +++ + ++LG E G+ + A Sbjct: 74 KTHRSIHDAVSHLKSQGMQVLATNLSASAVDFRDVDYTRPTCILLGQEKTGISAEALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+A+ LY Q Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] Length = 266 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 20/183 (10%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158 + KI +E H L A + P+L A + S LL+V + P N+GA+LRSA A Sbjct: 83 LKKISSRE--HPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEKPGNLGALLRSADAAG 140 Query: 159 CDGIIT---TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----TIG 211 D ++ YSP + ++++G + +P Q + W Q + Sbjct: 141 ADAVLVAGGVDLYSPQ----VIRNSTGVVFSLPTFAAPE-----QAVLDWLLQHNIPIVA 191 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + +A++LG E +GL E A + M G +LNVS AA+ Sbjct: 192 TTPHTHQTYWDVDLRGPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLNVSVTAAL 251 Query: 272 ALY 274 LY Sbjct: 252 MLY 254 >gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829] gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 272 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 19/226 (8%) Query: 66 RKIFQLLATKNALARLDWDANL--------PHPF---PVKTVPPQTIDKIVGKEAVHQGL 114 + +F+L + ++ L WD +L P F P+ + + K+VG Sbjct: 45 QTVFEL--HVDVISVLVWDKHLSNLERSISPEAFGDVPIYVASHELLSKLVGFNVCRGYY 102 Query: 115 ALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 A P LLS + + V++ + D N+GA++R+A A D ++ + + + Sbjct: 103 ACVRRPSLLSSASVDWHSYTRIAVVEDLCDVSNLGALIRNACALGIDAVVCSPTCADPFN 162 Query: 174 AVLAKSASGALEHIPYIRI-SNL-TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK- 228 +++ G + +P I+ SN D + S + G L D+ + + + K Sbjct: 163 RRCVRTSMGTVFRLPIIQANSNWPYDVFSCLSSADYTVFGAALRKDALNVHDVDFSHYKR 222 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL G E KGL + + + M + +LNV+ ++AV + Sbjct: 223 CALCFGNESKGLSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFW 268 >gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 217 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 8/154 (5%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASG 182 L A + L + LD V+D N+ A++R+A A I + ++ P + V + Sbjct: 20 LLAAKQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIFYARNNPQHVPVHTLVTQGAHRW 79 Query: 183 ALEH-IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240 H IPY + L+K G Q + + +++ + L+LG E +G+ Sbjct: 80 LRRHRIPY---EERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNEREGV 136 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ A+ + M G++++LN+S AAA+ LY Sbjct: 137 SPEVLAEASHSVIIPMHGMVQSLNISVAAALILY 170 >gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] Length = 490 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N GA +RSAVAF I+ + ++++GA+ H P +L D + Sbjct: 360 QDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAGAVLHAPLFEGPSLKDLPED 419 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + LS + P+ L+ G EG GL + A S+ + G ++ Sbjct: 420 L-----PIVPLSMEG-APITGFSFPAAFGLLAGIEGPGLPDAWRSRAVSIP---VTGAVE 470 Query: 262 ALNVSNAAAVALY 274 +LN + A AVALY Sbjct: 471 SLNAATAIAVALY 483 >gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] Length = 260 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 45/270 (16%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + I +L +AT+ AL + Sbjct: 7 RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64 Query: 84 DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRNS 132 A V + Q I D + G+ + V G+ + PL + R + Sbjct: 65 QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPA------RVA 112 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VLD V D N+G+ILRSA A + + + S+ + ++ GA + I Sbjct: 113 HTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGA-HFVLSIHE 171 Query: 193 SNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 DAL S G Q I D +P +A + G EG G+ Sbjct: 172 DVAPDALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFW 221 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ A + PG +++LNV+ AAAV L+ Sbjct: 222 RDIAAHRVTIPQPGGMESLNVAAAAAVCLF 251 >gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4] gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4] Length = 279 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 10/203 (4%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG-LALE---TAPLLSPTLDAVRNSQLLMVLDHVND 143 P PV +D I G +H+G LAL TAP + + ++ L++V +++ Sbjct: 77 PDDLPVYVASAAVLDAIAGFH-LHRGVLALGSRLTAPDATQLIASLPQRALVLVGCGISN 135 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA+ R+A F D ++ + + + G++ +PY R + L + Sbjct: 136 HDNVGAMFRNATGFCADAVLLDETSCDPLYRKALRVSVGSVLTMPYAREHSAIALLSALD 195 Query: 204 SWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + GF L+ + ++AL++G EG+GL ++ P Sbjct: 196 AAGFLVAALTPSGTTEIGDIASGLGGQQRLALVVGTEGEGLPADVLARFMTVRIAQSPQ- 254 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 + +LN+ A+ +AL+ K Sbjct: 255 LDSLNLGTASGIALHSAARALGK 277 >gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 177 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ HN+GA+ R+A AF + + + + K+A GA E + + Sbjct: 25 VVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGATESVDWEYEE 84 Query: 194 NLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 N + ++K+ + + + +S E E+ + K A+++G E G++ + + Sbjct: 85 NALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIVMGNEVDGVQQEIIDKTDV 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS + L+ Sbjct: 145 CLEIPQSGTKHSLNVSVCTGIVLW 168 >gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] Length = 220 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +V+ +V HNIG + RSA AF +I + + + + G+ H+ + Sbjct: 2 ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L +A + G G+ ++ + + A +LG EG GL PK E Sbjct: 57 HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116 Query: 252 AHLHMPGIIKA-LNVSNAAAVALY 274 ++ G A LNV+ AA++ L+ Sbjct: 117 TYIPQVGSGTASLNVTVAASIVLH 140 >gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 266 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P R S LL VLD + N GA++R A F G++TT P AV+ ++ +G Sbjct: 117 PGFAGPRTSPLL-VLDEPRNLGNAGAVIRLAAGFGASGVVTTGDLDPWHPAVV-RAGAGL 174 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 P R + L W F G D + + +D + L G+E GL Sbjct: 175 HFATPVARRA--VPELPAGPLWAFDAEG--EDLRG---LRVPDDAL-LAFGSERHGLTAA 226 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E A + L M + + N++ + +ALY Sbjct: 227 VRERADRLVALPMRPHVSSYNLATSVGMALY 257 >gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] Length = 179 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 13/176 (7%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L T + TL+ + ++ L++VLD V +N+G++ RS AF + + + Sbjct: 4 LRTIEMNRLTLEEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKN 226 + + K+A G + + + +A++K+ G+ Q G + P + Sbjct: 64 NVEIHKTALGGEDSVDWEYFKTTEEAVEKLKQKGYFVYSIEQVEGSTKLQNLPEAHPSLS 123 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+I G E KG++ + + + G +LNVS A + ++ FAK Sbjct: 124 KGYAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVW----EFAK 175 >gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65] Length = 249 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 12/143 (8%) Query: 136 MVLDHVNDPHNIGAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L V DP N+G ILR+ F C +++ P V+ +++ GA+ H+P + Sbjct: 111 VYLYEVQDPGNLGTILRTLAWFGGFRC--VLSPNSVDPYNPKVV-RASMGAIFHVPIEQN 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251 ++ D + + I + KPL E +++ I G E +G+ + + T+ Sbjct: 168 ISIDDMQNRFDEFACLDI-----NGKPLSSEGFSEQRCFIFGNEARGVPHEELSKLKTTA 222 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + G++++LN++ A + Y Sbjct: 223 YSIQGAGVVESLNLATAVNMCAY 245 >gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGA 183 TLD R L ++ D V+ P N+ AI+RS AF G+ P E K+A G+ Sbjct: 12 TLD-TRQPDLSVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPREGFRAFRKTAGGS 67 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + DA+ ++ G + SD + +I+G E G+ Sbjct: 68 YNWVTTHTHPTMDDAVSELKGQGHKLYAAQLSDRAIDYREADFTVPCTVIMGNEVDGVSH 127 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E A + M G++++LNVS+A A+ L Sbjct: 128 GAAEQADEHIVIPMMGMVESLNVSSACAIIL 158 >gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] Length = 178 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD+V +N+G++ RS AF + I + +A + K+A G + + + + Sbjct: 25 LVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSVDWKYFA 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 +A+ ++ + G+ + Q + + + A++ G E KG+ + Sbjct: 85 TTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETGQGQRYAVVFGNEVKGVSQSVVDLCDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CLEIPQFGTKHSLNVSVTAGIVIW 168 >gi|300175076|emb|CBK20387.2| unnamed protein product [Blastocystis hominis] Length = 698 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----LE 185 + +++++ V+ N+G + R+ F+ + I+ E + S + +E Sbjct: 433 KKQKIVVIASLVDKLPNLGGLTRTGEIFAVEKIVVNSLRCKKEQVFKSTSVTAEEWVEME 492 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 P S L L+++ G+ +GL + K L + +K+AL+LG E +G+ K Sbjct: 493 ECPE---SELPAYLRRLKEEGYALVGLEQTVTSKTLGKVEFPEKMALVLGKEKEGIPAKI 549 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 + + GII++LNV + ++ + YI+ N F Sbjct: 550 IQMLDLCIEIPQFGIIRSLNVHVSGSILIWEYISLNSFC 588 >gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 229 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + DA+ + Q + K +EI + +++G E G+ + + Sbjct: 72 QVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] Length = 180 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD++ N+GA+ R+A A + II T + + K+A GA E + + + Sbjct: 30 LMLDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRWEYCESA 89 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253 +A+ + + G + L ++ +P K D + LI+G E G+ + + Sbjct: 90 LEAIATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRECDEVIE 149 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G +LNV+ AA V+L+ Sbjct: 150 IPQYGAKHSLNVAVAAGVSLF 170 >gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 210 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 11/151 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R L++ +D V + HN AILR+ CD + + Y SE+ + ++ S A Sbjct: 23 RQKDLVVFVDDVTNEHNFSAILRT-----CDAVGVMRVYYFSEAKKGIEINEAVSMAANR 77 Query: 187 IPYI-RISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I R+ + A++++ Q + D +EI K L++G E KG+ Sbjct: 78 WLFIERVYDREKAIKEIKERENLQVVVTWLDESSKDFREINYTKPTLLVVGNELKGVSED 137 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G++++LNVS A + LY Sbjct: 138 ILNLADERIVIPMMGMVQSLNVSVATGIILY 168 >gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302] gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302] Length = 128 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 4/127 (3%) Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++R+A A G+I + + + S +S G+ H+P R+ +A + G Sbjct: 1 MIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMP--VEAFVEEAKKGNLP 58 Query: 210 IGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I ++ S+K + ++ + AL++G EG+G+ P + A + H+ M G ++LNV+ Sbjct: 59 ILATTLSQKSKDYRELVQLEDFALVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAI 118 Query: 268 AAAVALY 274 AA + ++ Sbjct: 119 AAGILMF 125 >gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] Length = 228 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + LD V+ +NI A+LR+A A + +S E V +ASG+ + + Sbjct: 16 RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ A++ Q + + SD+ +I+G E G+ P+ A Sbjct: 74 RVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGNERDGVSPEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS AAA+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQ 164 >gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] Length = 178 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD++ HN+G++ R+A AF + + + + K+A GA E + + + Sbjct: 26 VLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGATESVAWEYAGD 85 Query: 195 LTDALQKMHS----WGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 L ++ + W + + L +P + A +LG E KG+ + Sbjct: 86 TLQVLDRLETTHECWALEQAEGAVSLGEFRPEP------GKRYAFVLGHEVKGVSQAVID 139 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S AA V L+ Sbjct: 140 RCRGVVEIPQLGTKHSLNISVAAGVLLW 167 >gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN] gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN] Length = 239 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD + D N G+I+R++ D II + + ++ K++SG L +P + Sbjct: 90 LLLILDSITDVRNFGSIVRTSACTGVDAIIISNNNIVNSDSI--KTSSGGLFKVPICKEK 147 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + ++G Q I ++ + + A ILG+E KG+ + Sbjct: 148 NIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGISINYLSICNNRVK 207 Query: 254 LHM-PGIIKALNVSNAAAVALY 274 L + + +LNVS A LY Sbjct: 208 LPLIKNSLTSLNVSVACGAILY 229 >gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] Length = 98 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%) Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++SN+ + ++ + G +G ++ K E+ + +A ++G EGKG+ + Sbjct: 5 KVSNINNTIRGLKERGLWIVGTDVNAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQNCDF 64 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + M G I +LN S AA++ +Y Sbjct: 65 VVKIPMKGKINSLNASVAASILIY 88 >gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri GWSS] gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri GWSS] Length = 239 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD + D N G+I+R++ D II + + ++ K++SG L +P + Sbjct: 90 LLLILDSITDVRNFGSIVRTSACTGVDAIIISNNNIVNSDSI--KTSSGGLFKVPICKEK 147 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N+ ++ + ++G Q I ++ + + A ILG+E KG+ + Sbjct: 148 NIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGISINYLSICNN--R 205 Query: 254 LHMPGI---IKALNVSNAAAVALY 274 + +P I + +LNVS A LY Sbjct: 206 VKLPLIKNSLTSLNVSVACGAILY 229 >gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] Length = 257 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 15/156 (9%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 QL++ LD + DP N+G I+R A F+ I+ ++ Y+P V A S A ++ Sbjct: 109 QLILALDDIQDPGNLGTIVRIADWFAIPTILCSENTADIYNP--KVVQATMGSLARVNVV 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Y+ + N + H+ F G D K ++ + + +++G EG G+ + Sbjct: 167 YLDLENYI----RQHASEFPVYGTLLDGKDIYQENLGGHGL-IVMGNEGNGISAAIRTFV 221 Query: 249 TSMAHLHMPGIIKALNVSNA--AAVALYITQNHFAK 282 L++P K+ N + + A+A IT + F + Sbjct: 222 NK--PLYIPNFAKSANRAESLNVAIATAITCSEFRR 255 >gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 239 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF---SCDGIITTKRYSPSESAVLAKSASGALEH 186 R L ++ D+V+ N+ AI+R+A A S ++ K Y L G+ + Sbjct: 16 RQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCVVGDKDYRSFRGTAL-----GSHRY 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + R + L + + S GFQ + + E+ L++GAE GL Sbjct: 71 VEVHRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEVDYTAPTVLLMGAEKNGLSADGL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 E A + M G++++ NVS AA + L Sbjct: 131 EAADIHITVPMVGMVESFNVSVAAGIIL 158 >gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1] Length = 267 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 12/153 (7%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV------LAKSASG 182 +R L++V + + P N+GA+LR+A A D ++ +P + + +++ G Sbjct: 108 LRPDALVLVAEGIEKPGNVGAMLRTAEACGVDAVVIA---TPDRAGTDFANPNVVRASKG 164 Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + +P S T +Q+ + G +++ + L + AL++G E G+ Sbjct: 165 TVFAVPV--ASAPTAEVQEWLRRRGVRSVVTTPAGTTELGRADLTGPTALVIGTEATGVT 222 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G + +LN S AAAV L+ Sbjct: 223 GPWLAGADATVVIPMRGTVNSLNASIAAAVVLF 255 >gi|297522032|ref|ZP_06940418.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli OP50] Length = 66 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 32/60 (53%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L A + L++LD V DPHN+GA LRSA A +I K S +A K A GA Sbjct: 6 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 65 >gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P] gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P] Length = 265 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS------ESAVLAKSASGA 183 L++V + + P NIGA+LR+A A + + + Y+P+ + A G Sbjct: 116 LILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRASIGCVFTTQIAVGT 175 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 E I IS LT+ ++++ Q + +E + A+ +G E GL Sbjct: 176 SEEI----ISYLTENNIRLYATTLQ-------NSNEYHKENYTEASAIAVGTEDTGLTAV 224 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E AT ++ M G I ++NVS AAA+ L+ Sbjct: 225 FRERATQNINIPMQGEIDSMNVSVAAAIVLF 255 >gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 205 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186 R MVL+ + DPHNI A++R+A F + + YS ++S + G+ + Sbjct: 16 RTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSIL-----KGSYKW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + ++K+ G++ S+++ + + +A LG+E G P T Sbjct: 71 MSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLA 130 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A L GI +++NVS A V + Sbjct: 131 HADYEFKLPQYGITESMNVSVAGGVLM 157 >gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 239 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R + +++ HNIG ++R+A AF+ + I+ KR++ + V + +H+ Sbjct: 86 RRFPFHVAIENFTSDHNIGTVVRTANAFAAEAVHIVGKKRWNRRGAMVTDR-----YQHL 140 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 S + D LQ H I + + P+E ++ L+ G EG G+ + Q Sbjct: 141 --YHHSTVNDVLQWAHEHDLTVIAVDNVPGSVPVETAELPERCLLLFGQEGPGVSEEAQR 198 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G +++N AA +A++ Sbjct: 199 GAVQTVSIAQFGSTRSINAGVAAGIAMH 226 >gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] Length = 505 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVL--AKSASGALEHIPYIRISNLTDA 198 DP NIGA LRSA+AF +I T+ + P L A+ LE +R Sbjct: 359 QDPENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLE----LRFGPALAD 414 Query: 199 LQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L + + L D P L+Q + ALI G EG GL + M Sbjct: 415 LCGREQFAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLA-GIATNWLQRRRIPMS 473 Query: 258 GIIKALNVSNAAAVALY 274 I++LN + + AVALY Sbjct: 474 PRIESLNAAVSVAVALY 490 >gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] Length = 270 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 27/274 (9%) Query: 11 KIFSLKDSHYAKLR--RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 KI SL+D A+ R RN Y+ F + E L G+ TV + L + R Sbjct: 5 KIDSLQDDRLAQYRDLRNKSHYRTTGYFVAEGWRVV--ERLLRSGL-TVDSILVSERRA- 60 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 +L+ K A R D V +P + +++VG H G+ +P+L A Sbjct: 61 -ELMVPKFA-DRAD----------VLILPQREAEELVGYN-FHGGVLASALKPDNPSLSA 107 Query: 129 VRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + N + ++ H+ P N+G++ R A F GI+ + + + G + Sbjct: 108 LLNGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRRCVRVSMGTIF 167 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK--KPLEQ---EIKNDKIALILGAEGKGL 240 +P ++ LQ++ + + + DS+ +PL + + L+LG E GL Sbjct: 168 QMPIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATPGKRRVLLLGNEADGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + M + +LN++NAA + LY Sbjct: 228 GQPFLKLVDAVYDIPMADGVDSLNIANAAGIFLY 261 >gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 270 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 +S L++ LD V DP N+G I+R A F I+ T Y+P V A S A Sbjct: 112 DSSLILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNP--KTVQATMGSIARTK 169 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I Y +S ++L G D EQ + + + +I+G EGKG+ ++E Sbjct: 170 IVYTDLSAYLESLPNETP----VYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGI---SKE 221 Query: 247 TATSMAH-LHMPGIIK------ALNVSNAAAV 271 + H L +PG K +LNV+ A A+ Sbjct: 222 ITRYINHRLFIPGYPKDRPSAESLNVAIATAI 253 >gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 218 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186 R MVL+ + DPHNI A++R+A F + + YS ++S + G+ + Sbjct: 29 RTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSIL-----KGSYKW 83 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + ++K+ G++ S+++ + + +A LG+E G P T Sbjct: 84 MSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLA 143 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A L GI +++NVS A V + Sbjct: 144 HADYEFKLPQYGITESMNVSVAGGVLM 170 >gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] Length = 229 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + D++ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss] gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14] gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 265 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184 +N Q ++++ P NIGA+LR A DG+I Y+P+ + +S+ GA+ Sbjct: 113 KNQQPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGAV 168 Query: 185 EHIPYIRIS-NLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +P + S AL + W QT + +PL A++ G+E Sbjct: 169 FTVPIWQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPL---------AVVFGSE 219 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL P + + L M G +LN+S++ A Y Sbjct: 220 KDGLSPSWLDGSFCNIALPMLGKADSLNLSSSVAAVAY 257 >gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] Length = 271 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/139 (20%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +++D + DP N+G +LRSA+ ++ T + + ++A+GA H+P I+ L Sbjct: 119 LIVDRLQDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRAAAGAHFHLP---IATL 175 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + + + ++ A+++G+E G+ + A + Sbjct: 176 DPVAIQREFPGLEIVVARPQALRAYDERDWTRASAVVIGSEAHGISAELARLAADEVRIP 235 Query: 256 MPGIIKALNVSNAAAVALY 274 + G +++LN A ++ L+ Sbjct: 236 LRGGVESLNAGVAGSIILF 254 >gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] Length = 268 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 26/218 (11%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTL 126 LLA A D A P P+ T +D I G +H+GL P ++ + Sbjct: 57 LLAESRVHALTDLLAQAPDDLPIYTAAQPILDGITGFH-IHRGLLGVGLRGEMPSMADLV 115 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF----------SCDGIITTKRYSPSESAVL 176 ++ + L++V + + N+G I+R+A AF SCD P + Sbjct: 116 ASLPDEALVVVPLGITNHDNVGGIMRNAAAFGADAALFDFASCD---------PLYRKAI 166 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 S G+L +P+ R + L + + GF+ + LS + L + + AL+LGAE Sbjct: 167 RVSVGGSLV-VPFAREGSAEAILDLLAAHGFELLALSPAGEATLGGIERPKRAALLLGAE 225 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G GL P + M +LNV+ + +AL+ Sbjct: 226 GPGL-PDHVLARARTVRIPMKAGFDSLNVATTSGIALH 262 >gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 12/156 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + + LD V DP N+G I+R+A A GII + S ++ G++ +P Sbjct: 115 EGETWVALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLA 174 Query: 191 RISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 R + ++ +W ++ G+S + + + + + L++G E GL + Sbjct: 175 RATP-----EEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 228 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++A + G +LN++ A AV L+ + H Sbjct: 229 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 264 >gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 233 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 13/171 (7%) Query: 110 VHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + G ET + VR S ++ +V+ ++ NIG I+RS VAF+ I R Sbjct: 1 MENGNNFETDKEREDDRNGVRTSISKMYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR 60 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS----SDSKKPLEQE 223 + E++ G++ YI+I T+ ++ I L ++ P+ ++ Sbjct: 61 -NKKETSFF-----GSMGTHGYIKIRYFTNMIELKQYLNNNDILLYACEITNQSIPITEQ 114 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 N IA + G EG G+ + + ++ G A LNVS + A+ L Sbjct: 115 PFNKDIAFLFGNEGTGISEQIINMCDKIIYIPQYGNGTASLNVSVSCAIIL 165 >gi|331664149|ref|ZP_08365059.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA143] gi|331059948|gb|EGI31925.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA143] Length = 123 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 46/102 (45%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES ++A G EH+ I N+ + L G+ + SS+ KPL + K+ L Sbjct: 13 ESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 72 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +LG E +GL ++ + G + LN+S A V L Sbjct: 73 VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLL 114 >gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] Length = 229 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + + +A +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASAAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + DA+ + G Q + SD+ + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 261 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ + + + S + ++ GA ++L Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L + F T L + + L E A + G EG G+ + A + Sbjct: 175 EIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKYVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 234 MHDATESLNVAMAATICLF 252 >gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 202 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 57 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 109 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 110 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 167 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 168 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 199 >gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 314 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 20/187 (10%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +TV PQ G AV Q L L A L+ R +L+ VL + DP N G +LR+ Sbjct: 100 ETVAPQ------GLIAVCQHLDLPLATALA------RAPRLVTVLADIRDPGNAGTVLRT 147 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A ++ + + ++++G+L H+ +R + + + + G + + Sbjct: 148 ADAAGAQAVVFAGTAVDPYNGKVVRASAGSLFHVDVVRAPDPLQVIADLRTAGLAVLATT 207 Query: 214 SDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSN 267 L+ ++A + G+E GL + TA + A + +P G ++LN++ Sbjct: 208 GYGADDLDDLADAGRLAAPTAWVFGSEAHGL--PVELTAAAEARVRVPLHGRAESLNLAA 265 Query: 268 AAAVALY 274 AAAV LY Sbjct: 266 AAAVCLY 272 >gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 284 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 113/296 (38%), Gaps = 48/296 (16%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRD--YKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 ++++ + IFS K S ++ + + K ++S R + + + GV V+ Sbjct: 5 GFAAQQQPKTIFSAKKSGMRRMISSTHNAHVKYLRSLCADPRERRREQRFVIEGVRLVAH 64 Query: 60 ALN----------NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 AL NP L AT A L+ P F V + Sbjct: 65 ALAVGAELCVVLYNPD----SLRATPAGSALLEHLLTRPGCFAANEVAISAATDTRTPQG 120 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 V +A P L+P L ++LD + DP N+G +LRSA A ++ + Sbjct: 121 VVAAMAW---PNLAP------QPGLGLILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCA 171 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------LSSDSKK 218 + + ++A GA ++P H ++ IG ++D+ Sbjct: 172 DPFAPKVVRAAMGAHFNLPL------------RHDLSWEDIGAEVADLPVVYAAAADAAM 219 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P Q N ALI+G+E GL AT + M G ++LN + A +V L+ Sbjct: 220 PYYQADWNQPAALIIGSEAHGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLF 275 >gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] Length = 230 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + + + L +A+G+ + Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMRTLVSTAAGSNSWVQV 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 + DA+ + + G Q + + + +E+ + ++LG E G+ A Sbjct: 74 ETHRTVQDAVGHLKTQGMQILATNLSASAVDFREVDYTRPTCILLGQEKTGITADALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+A+ LY Q Sbjct: 134 DQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164 >gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 181 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/149 (20%), Positives = 70/149 (46%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188 L+++LD+V +N+G++ R +CD + K Y +A + K+A GA + + Sbjct: 25 LIVILDNVRSLNNVGSVFR-----TCDAFLVEKIYLCGITATPPNKEIHKTALGATDSVA 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245 + + ++++ + G I + K + + + + + A+I G E KG+ + Sbjct: 80 WEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIFGNEVKGVAQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LNVS +A + ++ Sbjct: 140 SLSDGVIEIPQYGTKHSLNVSVSAGIVIW 168 >gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190] gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579] gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902] gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis NZ-05/33] Length = 261 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ + + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + F T L + + L E A + G EG G+ + A + Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34] gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34] Length = 262 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + D N+G+ILRSA A TK + + S ++ GA H+ + Sbjct: 115 CIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCT 174 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L ++ + SS + + + ++G EG G+ P+ + + Sbjct: 175 LEMLESRL---AVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGI 231 Query: 255 HMPGIIKALNVSNAAAVALY 274 PG +++LNV+ A AV L+ Sbjct: 232 PQPGGLESLNVAAATAVCLF 251 >gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240149] Length = 261 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ + + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + F T L + + L E A + G EG G+ + A + Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 161 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +++ N ++ ++L+H+ P NIG ILR+A A ++ S + ++ A Sbjct: 9 INSKHNKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTRSAEN 68 Query: 186 HIPYIRISNLTDAL----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ I +++ +A+ + H + + S D E ++ G E G+ Sbjct: 69 NLNIIFVNSWEEAINHFEKNTHFYALEKTNKSVDY-TTFEYHF---PCVIVCGNEKDGVS 124 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K E T+ H++M G +LNV+ A + L Sbjct: 125 NKALEKCTNHLHINMYGKNTSLNVAIATGILL 156 >gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] Length = 219 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182 R L ++ + V+ PHN+ AI+R+ CD + I T P+ S V S Sbjct: 18 RQPDLTVLTEDVHKPHNLSAIIRT-----CDAVGILDVHSINTTDEFPTFSQVSQGSDKW 72 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLR 241 H N+ A+ + S F+ K ++I + AL+LGAE G+ Sbjct: 73 IFLHTH----PNIQTAINHLKSKKFKIYAAHLTDKSVDYRDIDYTQPTALLLGAEKWGV- 127 Query: 242 PKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQ 277 E A S+ H M G++++LNVS AAAV L+ Q Sbjct: 128 ---SEEAASLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQ 164 >gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] Length = 263 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L+ + DP N+G I+R+A A G+ + + + ++++G + Sbjct: 110 LALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSH 169 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL D +Q G Q + ++ Q + ++LG EG GL + A Sbjct: 170 NLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDELATMANIQVK 229 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + + +++LNV+ +A++ LY Q Sbjct: 230 IPLSPQVESLNVAISASLILYEAQ 253 >gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 257 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 11/118 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182 D V ++L ++LD V DP N+G I+R A F ++ T Y+P V A S Sbjct: 100 DCVETNELTLMLDGVQDPGNLGTIVRLADWFGIRHVVCSLDTADVYNP--KVVQATMGSI 157 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 A + Y + L DAL F G D Q++ I +++G EGKGL Sbjct: 158 ARVKVSYTPLEPLLDALPP----SFPVYGTLLDGDNIYGQQLCAHGI-IVMGNEGKGL 210 >gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 66 Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEG G+R T +T + + M G +++LNVS A+ + LY Sbjct: 10 VALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLY 55 >gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 265 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ D++ DP N+G +LRSA A + T + S + ++ GA +P +S Sbjct: 115 FVVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLPVQEVS 174 Query: 194 NLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 L+ M + Q G+ +++ P +AL++G E +G + + Sbjct: 175 -----LEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLEMRALV 229 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + MPG ++LN + AA + L+ Sbjct: 230 DGNITIPMPGKSESLNAAVAAGILLF 255 >gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu] Length = 260 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA A + + + S+ + +S GA H + I Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGA--HF-LLSIHED 172 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A G S + + + + G EG G+ ++ AT + Sbjct: 173 IEAGALAERIGVPVALTDSHGAQAIYDCDLAGPVVWVFGNEGAGVSAFWRDAATHRVTIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 PG +++LNV+ AAAV L+ Sbjct: 233 QPGGMESLNVAAAAAVCLF 251 >gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] Length = 232 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKR-YSPSESAVLAKSASGALEH 186 R + L +VL+ + P N A +R+ + S II T Y+ + VL GA + Sbjct: 45 RTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNTYTLNPGVVL-----GASKW 99 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQ 245 I I+ + A + G++ + S D++ + +DK+A+ G E GL Sbjct: 100 IDIIKYQCVESAFDNLKGNGYKIVATSLDNEAIFLDDFPIDDKMAIFFGTELTGLSNTVL 159 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G ++ N+S A ++ Y Sbjct: 160 ENADLHLKIPMYGFTQSYNLSVAVSIVFY 188 >gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei] gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei] Length = 1229 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192 L++V V+ P+N+G I R++ F D ++ +S A S S + I ++ Sbjct: 1076 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSENWQKIEGVKP 1135 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251 +NL + LQ + S G+ I + + K A+I +G E +G+ Sbjct: 1136 ANLLEYLQGLRSQGYTVIAAEQTTDSVMMHNFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1195 Query: 252 AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282 + G ++LNV AA +A + Q FAK Sbjct: 1196 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFAK 1228 >gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ HN+ AI+RSA A C + P L + SG ++ Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPENQKWLTNNTSGGSKNWLE 72 Query: 190 IRI-SNLTDALQKMHSWG--FQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 + N+ DA M + Q + LS+D+ +EI K A+I+G E G+ + Sbjct: 73 THLHKNIDDAATAMRARNPDIQILATHLSTDAVDF--REIDYTKPTAIIVGQEKTGISEQ 130 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS AAA+ L+ Q Sbjct: 131 ALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164 >gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 251 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 106 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 158 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 159 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 217 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 248 >gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 177 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 19/158 (12%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASG 182 A + + L+++LD++ +NIG++ R+A AF + TK Y +A + K+A G Sbjct: 19 AAQKTPLILILDNIRSLNNIGSVFRTADAF-----LVTKIYLCGITAQPPHKDINKTALG 73 Query: 183 ALEHIPYIRISNLTDALQKMHS-----WGF-QTIGLSSDSKKPLEQEIKNDKIALILGAE 236 A E + + N + ++++ + W Q G + K L+ E ALI G E Sbjct: 74 ATETVAWEYRENTLELVKELQAQSIAVWSVEQAQGATFLDKMSLQPE---TTYALIFGNE 130 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KG++ + + + G +LN+S +A V ++ Sbjct: 131 VKGVQQAVVNESDGVVEIPQFGTKHSLNISVSAGVVVW 168 >gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] Length = 218 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSPSESAVLAKSASGALEH 186 R + L VL+ + HN A +R+ I +Y+ + L G+ + Sbjct: 31 RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNNKYTLNPDITL-----GSSQW 85 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I + N A+ ++ S G+ + S S+ LE N+K+A+ G E GL + Sbjct: 86 INLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVL 145 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G ++ N+S A A+ +Y Sbjct: 146 EAADLCVKIPMYGFTQSYNISVAVAIVMY 174 >gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 7/159 (4%) Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAV 175 P +DAV R L +V++ DP N+ A+LR+ AF + + P + Sbjct: 28 PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIEGPMKPYDRN- 86 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234 K + A + + R S+ + L + + GF + + L+ K+AL+ G Sbjct: 87 -KKISQNADKWVDVRRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVFG 145 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E +G+ + + ++ + M G +++LNVS AAA+++ Sbjct: 146 NEHRGVSDEAVALSDAVYVIPMHGFVQSLNVSVAAAISI 184 >gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 242 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179 PT ++ + +VLD + DP N+G I+R A F + I+ T Y+P + ++ Sbjct: 88 PTPKITEDNNINLVLDGLQDPGNLGTIIRLADWFGIEQIVCSTDTVDVYNPK----VIQA 143 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ + + +D Q + + + IG + + + K L+LG EG G Sbjct: 144 TMGSFTRVNVV----YSDIEQFLLNSPAENIGTDMEGENLYKTNFPK-KFNLVLGNEGNG 198 Query: 240 LRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL 273 +RP + + G ++LNVS AA + L Sbjct: 199 MRPSVERLMKRNITIPRFGNHRATESLNVSMAAGIIL 235 >gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 249 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 104 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 156 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 157 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 215 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 246 >gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio] Length = 1083 Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 9/171 (5%) Query: 117 ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 E P L A+R S LL+V ++ P N+G + R+ F ++ ++ Sbjct: 908 EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 967 Query: 173 SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKI 229 A S S L +P + + + L+D LQ S G+ IG+ S + L+ +K Sbjct: 968 KQFQALSVSSEL-WLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 1026 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 L+LG E +G+ + + G+ ++LNV +AA+ ++ T+ H Sbjct: 1027 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 1077 >gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 235 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 40/194 (20%) Query: 98 PQTIDKIVGKEAVH-QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA- 154 PQ I + + VH QG+ AL P + P L++V+D V DP N+G +LRSA Sbjct: 54 PQVIASV--ADTVHPQGVVALARWPQIPPG-----KPGLILVIDAVQDPGNLGTLLRSAE 106 Query: 155 ---VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 VA + + T Y+P + +SA GA +IR+S +++ W IG Sbjct: 107 AVGVAQTLCSVGTVDVYAPK----VVRSAMGA-----HIRLS-----IEQDVRW--DEIG 150 Query: 212 ---------LSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++D ++ P AL++G E GL + AT + M G Sbjct: 151 ERLADVDHVYAADPHARMPYYAADWRQPSALLVGNEAHGLSEAARRLATKPITIPMCGRA 210 Query: 261 KALNVSNAAAVALY 274 ++LNV+ AA+V L+ Sbjct: 211 ESLNVAVAASVILF 224 >gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 249 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 104 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 156 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 157 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 215 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 246 >gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata] Length = 323 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C+ ++ TK P E VL ++ GA +P I Sbjct: 206 LLLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPII 262 >gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 251 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 106 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 158 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 159 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 217 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 248 >gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 198 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186 R ++ +D V + HN AILR+ CD + + Y SE+ + ++ S A Sbjct: 11 RQKDFVVFVDDVTNEHNFSAILRT-----CDAVGVMRVYYFSEAKKGIEINEAVSMAANR 65 Query: 187 IPYI-RISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I R+ + A++++ Q + D +EI K L++G E KG+ Sbjct: 66 WLFIERVYDREKAIKELKERENLQVVVTWLDESSKDFREIDYTKPTLLVVGNELKGVSED 125 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G++++LNVS A + LY Sbjct: 126 ILNLADERIVIPMMGMVQSLNVSVATGIILY 156 >gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct] Length = 250 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232] Length = 252 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184 +S+ L++L+++ +P N+G I+R+ +F D + + K S S+ A+ + Sbjct: 107 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 159 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 +I +++ N++D + L D++ ++ ++ +K +I G EGKG+ K Sbjct: 160 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 217 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +++P ++LN+++A A+ + Q Sbjct: 218 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 249 >gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus] Length = 1534 Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1375 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1433 Query: 191 -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248 R S L D LQ+ + G+ IG+ ++ L Q +K L+LG E +G+ + Sbjct: 1434 VRPSQLMDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1493 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1494 DVCVEIPQQGIIRSLNVHVSGALLIW 1519 >gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 262 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 2/158 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +T P L L + + L+++ + P NIGA+LR+A A + D +I S + + Sbjct: 99 KTKPFLLSDLK-LSQTPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKSDLYNPNI 157 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S+ G L I + + + + + P + AL++G E Sbjct: 158 VRSSVGCL-FTTQIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTE 216 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + + AT + M G I ++NVS AAA+ ++ Sbjct: 217 ATGLTQEWRNNATQNIIIPMQGEIDSMNVSVAAAILIF 254 >gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1] gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1] Length = 263 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 4/148 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R +VLD V D N+G+ILRSA AF ++ K + S + ++ GA + Sbjct: 111 IRAGVATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHFGLQ 170 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ D + + G I SS + + A +G EG+G+ + A Sbjct: 171 LVESASSED----LDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRA 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + PG ++LNV+ AAA+ L+ + Sbjct: 227 AQHVRIGQPGGEESLNVAAAAAICLHAS 254 >gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 250 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM 22836] Length = 263 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 27/157 (17%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS--ESAV-----LAKS 179 ++ L++L+ V P N+GA+LR+A A D +I T Y+P+ S+V + + Sbjct: 113 DTPFLIILESVEKPGNLGAVLRTADAAQADAVIVCDPATDIYNPNAIRSSVGCVFTVQTA 172 Query: 180 ASGALEHIPYIRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + E + Y+R N+ ++++ W +Q +D KP A+++G E Sbjct: 173 VCTSQEALSYLRSRNIKAYAAELNASQW-YQ----DTDFTKP---------SAIVMGTEA 218 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + A + M G I +LNVS + A+ + Sbjct: 219 DGLTLFWLDNADYRVKIPMRGKIDSLNVSVSTAILTF 255 >gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens] Length = 147 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++LD + N+G ++R+ + +P AVL K+A A + R Sbjct: 1 DLTVILDGLRSGENVGNVIRTCETAGARVLCCGTTPAPPTPAVL-KAACNAAPFVDVRRE 59 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + DA++ + G L ++ PL +AL+ G E G+ P + Sbjct: 60 PSTLDAVRALQGRGVAVYALETTRGSVPLYDADLPAPLALVFGNELVGVHPDVLAACDGV 119 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L G+ +LNV++ AA A+Y Sbjct: 120 VSLPTFGVKNSLNVASCAAAAVY 142 >gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 252 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 14/147 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 ++VLD + DP NIG ILR+A+A I+ T ++P ++ GA + + Sbjct: 105 FILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKA----IRAGMGAQFSLKF 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 NL+ A++ + + I L++ + +E K L+ G E G+ + Sbjct: 161 RYFENLS-AVRNYPTLKERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIEDFSVGE 219 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 T + L I++LNV+ AA + L+ Sbjct: 220 KTMIPTLSN---IESLNVAQAATIYLF 243 >gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 259 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHIPYIR 191 +++LD + P N+G++LR A A II K Y + + + S I + Sbjct: 110 FILILDGIEKPGNLGSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKILIEK 169 Query: 192 ISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ LQK + GF + L + + ++A++LG+E KG+ P Sbjct: 170 KKSIISWLQKKKIEIVVTGFH------EKAIQLYRTKFSSRLAIVLGSENKGVSPIWLNI 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + M G + +LNVSNA ++ +Y Sbjct: 224 AHKIVTIPMFGDMDSLNVSNAMSIMIY 250 >gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4] gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4] Length = 294 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 25/206 (12%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL---------------------- 135 PQ +++I + H G+ LE + + ++ N Q++ Sbjct: 84 PQ-VERIAARTVAHGGMVLEVSEKVMASITRKDNPQMVAGVFDQRWKALKDVSLTEGETW 142 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V DP N+G I+R+A A G++ + + ++ G++ +P ++ + + Sbjct: 143 VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVK-TTV 201 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L G + + + + K + +++G E GL + A +A + Sbjct: 202 ADFLGWKTKAGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARI 261 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 G+ +LN++ A V L+ + H Sbjct: 262 PQAGLADSLNLAVATGVMLFEARRHL 287 >gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56] Length = 274 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 13/196 (6%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL------ETAPLLSPTLDAVRNSQLLMVL 138 P PV ++ IVG +H+G LAL + A LL DA+ L++V Sbjct: 76 RFPADVPVYVAEADALEGIVGFH-LHRGVLALGRREERDEAALL----DALPERALVLVG 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDL 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + ++AL++G EG+GL P A + Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRVIPAAARMALVVGTEGEGL-PAALLARFQSARIPQSD 249 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 250 ELDSLNAATATGIALF 265 >gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens] gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens] Length = 328 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 34/170 (20%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS- 193 ++ D+V DP N+G I+RSA A +C +I T + + +SASG+ +P Y I+ Sbjct: 146 LICDNVRDPGNLGNIIRSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITW 205 Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDK---------------IA 230 + + AL+ M+ F D + L+ I N+K Sbjct: 206 GQISCSKALKSMN---FYLAECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGAL 262 Query: 231 LILGAEGKGLRPKTQETATSMA----HLHMPGI--IKALNVSNAAAVALY 274 L +G E G + T + T + +P I++LNV+ AA++ L+ Sbjct: 263 LAIGNEAHGFKLNTTASVTECCDITQRITIPLCHRIQSLNVATAASIILF 312 >gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans] Length = 388 Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 28/170 (16%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGAL-------- 184 + +V D++ DP+N+G+I+R+ A C +IT P ES L G Sbjct: 216 ITVVCDNIRDPNNLGSIIRTCAALPCLQVVITIGCCDPWESKSLRGGCGGHFRIQIHDDV 275 Query: 185 --EHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQ---EIKNDKIALILGAE 236 E +P + + L D + W F I S+ L+ E +I+G E Sbjct: 276 HWEEVPLVIPAELAD-----NCWVFIAENNISKSAGLTNVLDYTNIEQTGSHSVVIIGGE 330 Query: 237 GKGLRPKTQETATSMAH----LHMPGI--IKALNVSNAAAVALYITQNHF 280 G+ + + ++ + LH+P I +LNV++A + LY + H Sbjct: 331 SHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLILYELRKHV 380 >gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 246 Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 15/157 (9%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179 P ++ L +VLD V DP N+G I+R F + +I T Y+P V A Sbjct: 87 PVKRDLKIGDLTVVLDGVRDPGNLGTIIRLCDWFGIENLICSLDTVDCYNP--KVVQASM 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S I Y + N+ A + + +G G + SKK K DK +++G E G Sbjct: 145 GSLTRVEIFYSDLVNVLGAHKNIPVFGTMLNGENIYSKK------KPDKALIVMGNEANG 198 Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273 + + Q ++ + G I+ +LNV+ A ++ L Sbjct: 199 ISEEIQALISNKITIPQFGEIQETESLNVATATSIIL 235 >gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 283 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 119 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKA----VRASVGSLFHLP 174 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + L+ E+ + A + G E GL +T Sbjct: 175 VAVGVTVERAVGGLRDAGVRVLAADGAGADDLDDELDRGTMGTPTAWVFGNEAWGLPEET 234 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G ++LN++ AAAV LY Sbjct: 235 RALADAVVRVPIHGRAESLNLATAAAVCLY 264 >gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42] gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42] Length = 286 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 12/157 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + + LD V DP N+G I+R+A A GII + S ++ G++ +P Sbjct: 129 QEGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPV 188 Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 R + ++ +W ++ G+S + + + + L++G E GL + Sbjct: 189 ARATP-----EEFLAW-RKSAGVSIVATHLAGAVDYRTIDYRKKPTVLLMGNEQSGLPDQ 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++A + G +LN++ A AV L+ + H Sbjct: 243 LAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279 >gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii yoelii] Length = 227 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 13/149 (8%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++ +++ ++ NIG I+RS VAF+ I R + E++ G++ YIR Sbjct: 17 TKMYVIIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR-NKKETSFF-----GSMGTHGYIR 70 Query: 192 I---SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQ 245 I SN+ + + ++ G ++ P+ ++ +KN A + G EG G+ + Sbjct: 71 IRYFSNMIELKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTGISDQII 130 Query: 246 ETATSMAHLHMPGI-IKALNVSNAAAVAL 273 + + ++ G I +LNVS + A+ L Sbjct: 131 KMCDKIIYIPQYGNGIASLNVSVSCAIIL 159 >gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 282 Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 13/174 (7%) Query: 112 QGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QG+ P+ P LDA +++L+ VL V DP N G ++R A A D ++ Sbjct: 107 QGVVAVCDPVEVP-LDAALTPSARLVAVLHGVGDPGNAGTVVRVADAAGADAVVFAGDSV 165 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKND- 227 + ++++G++ H+P R + D + G + + + + L +++ D Sbjct: 166 DVHNGKCVRASTGSVFHLPIARARSAEDVFAACRAAGLRLVAADGYATEDLVTADLRGDL 225 Query: 228 --KIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALNVSNAAAVALYIT 276 A + G+E GL E TS+ L +P G ++LN++ AAAV LY + Sbjct: 226 AHPTAWVFGSEAHGL---PDEVVTSLDGALKVPLYGGAESLNLATAAAVCLYAS 276 >gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] Length = 258 Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+ + DP NIG ILRSA A ++ + + + S + ++ GA + +L Sbjct: 115 VVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAHFALRLFVEPDL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++ H T L +S + +++ A + G EG G+ A+ + H+ Sbjct: 175 AAWRERCHVPLLAT-ALHRNSVSLYDCDLRAPA-AWLFGNEGAGVSETMLAAASRLVHIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA V L+ Sbjct: 233 MAVQTESLNVAMAATVCLF 251 >gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] Length = 290 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-- 197 V DP N G ++RSA A C G++ + + +S +G+L H+P + + TD Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193 Query: 198 ----ALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247 A + + + G + +PL Q + K L G E +GL E Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL-FGNEARGLTQDVLER 252 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 253 VDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] Length = 298 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 4/154 (2%) Query: 125 TLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 T++AV ++L VL V DP N G ++R+A A D ++ T + + +S +G+ Sbjct: 134 TVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGS 193 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 L H+P + A + G Q G +D L + A + G E +GL Sbjct: 194 LFHLPVVTAVPAEAAAAAARAAGLQVWAADGYGADRLDALAPGLVAAPTAWLFGNEAQGL 253 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LNV AA V LY Sbjct: 254 DDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] Length = 228 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187 R L ++ D V+ N+ AI R+ CD GI T P + S + E Sbjct: 16 RQPDLTVITDEVHKGRNLSAITRT-----CDAVGIDTIHCVMPEDGYQTYNGTSASAEKW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ S+++ + + GFQ + + D+ AL+LGAE KG+ P+ Sbjct: 71 VAVQHHSSISAPVNDLKREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAA 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++ NVS AAA+ L Q+ Sbjct: 131 AAVDYNVTVPMVGMVESFNVSVAAAIILMEAQHQ 164 >gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] Length = 250 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 25/163 (15%) Query: 124 PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178 P L+ + S ++VLD + DP NIG ILR+A+A +I T ++P + Sbjct: 93 PKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IR 148 Query: 179 SASGALEHIPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIAL 231 + GA + + I+NL + LQ+ W T G+S +K + K L Sbjct: 149 AGMGAQFSLKFSYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----DFKLANSIL 202 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E G+ + T + L I++LNV+ AA + L+ Sbjct: 203 VFGEEANGIEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] Length = 228 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 11/169 (6%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RY 168 + ++ E +L TLD+ R + ++ ++ N A++R AF I T + ++ Sbjct: 21 EFMSEERRQVLQRTLDS-RTRYMTILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKF 79 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKN 226 +P+ + V G + I R +A+ + G++ + + + K P ++ Sbjct: 80 NPNVNIV-----RGTDKWIDLHRHRTTAEAIADLKGRGYRIVATTPHREDKTPETFDVAA 134 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L+ G E G+ + A + M G++++LNVS +AA+ +Y+ Sbjct: 135 SPFVLVFGTEHAGISDEIVAAADEFLRIPMCGMVESLNVSASAAILIYM 183 >gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 254 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + +AVR+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G D K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197 Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271 +++G EG G+ +E AT + L++P ++LNV+ A AV Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242 >gi|330862873|emb|CBX73011.1| uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia enterocolitica W22703] Length = 293 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191 ++ L+ V +PHN+G I+R+ F +G++ P+ ES ++A G EHI I Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277 Query: 192 ISNLTDALQKMHSWGF 207 + L G+ Sbjct: 278 ADDFLSVLDTFRKAGY 293 >gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 303 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 26/166 (15%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL V DP N G +LR+A + D ++ T Y+P +S +G+L H+P Sbjct: 130 RLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKA----VRSTAGSLFHLP 185 Query: 189 YIRISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKI---------------A 230 + +++ + + G + G S + L+ E ++ A Sbjct: 186 VVLGADVGELAAACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYALEQPTA 245 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + G E +GL + A + + G ++LN+ AA V LY + Sbjct: 246 WLFGNEAQGLSEEELALADHRVAVPVYGSAESLNLGTAATVCLYAS 291 >gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 254 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + +AVR+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAIFEQPQYTLAPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G D K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLTANGL- 197 Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271 +++G EG G+ +E AT + L++P ++LNV+ A AV Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242 >gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703] gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703] Length = 290 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-- 197 V DP N G ++RSA A C G++ + + +S +G+L H+P + + TD Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193 Query: 198 ----ALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247 A + + + G + +PL Q + K L G E +GL E Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL-FGNEARGLTQDVLER 252 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN+ +AAV L Sbjct: 253 VDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644] gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644] Length = 284 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 12/153 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++V + +P N+GA++R G++ S + + + GA P + S Sbjct: 126 VVLVCPALFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVVEAS 185 Query: 194 NLTDALQKMHSWGFQTIGLS------------SDSKKPLEQEIKNDKIALILGAEGKGLR 241 N+ AL + G + + + P ++ D++AL+LG+E GL Sbjct: 186 NVAAALDYLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAHGLE 245 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + A + + M +LN++ A + LY Sbjct: 246 PCWVQRADQLTTIVMRPGADSLNLAVATGILLY 278 >gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus] Length = 1500 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1341 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1399 Query: 191 -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248 R S L D LQ+ + G+ IG+ ++ L Q +K L+LG E +G+ + Sbjct: 1400 VRPSQLVDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPVNLIQQL 1459 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1460 DVCVEIPQQGIIRSLNVHVSGALLIW 1485 >gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 254 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + +AVR+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G D K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197 Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271 +++G EG G+ +E AT + L++P ++LNV+ A AV Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242 >gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] Length = 247 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + LD ++D N+G I+R+A AF+ G+I ++ + ++ ++ +P + Sbjct: 109 FLYLDKISDAGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKE 168 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L K + F+ I + + KP+++ + + L++G E G+ K E A + Sbjct: 169 --DELIKNN---FKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKI 223 Query: 255 HMPGIIKALNVSNAAAVALY 274 + + +LN AA + Y Sbjct: 224 PIRDSVDSLNAGVAAGIFAY 243 >gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis] Length = 195 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 20/153 (13%) Query: 136 MVLDHVNDPHNIGAILRSAVAFS----CDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ +V+ HN+G + R A AF+ C ++ +++++ A G+ E++ + Sbjct: 2 LITYNVSKKHNLGTLARCATAFNVRQLC--LVGSRQFNTF-------GAHGSSEYVDFCH 52 Query: 192 ISNLTDALQKM-HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L + Q + + G +G+ D +P+ + A +LG EG+GL K Sbjct: 53 YNTLDECCQDLKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCD 112 Query: 250 SMAHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281 S ++ G A LNV+ AA++ L+ HFA Sbjct: 113 SFLYIPQYGAGTASLNVAVAASIVLH----HFA 141 >gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 184 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 E A LL A ++++L ++ N+G++ R+A + + II + + + Sbjct: 17 EMARLLPEEYAASPCHPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEI 76 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234 +K+A GA E +P+ + ++K+ + G + L + S+ + + I L++G Sbjct: 77 SKTALGADESVPWSYTEDAYKTVRKLQAEGVKVCALEIAEGSRAHSSICMADFPICLLVG 136 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL + + ++ + G +LNV+ AA VAL+ Sbjct: 137 NEVDGLDDELLQACDAVLEIAQYGTKHSLNVAVAAGVALF 176 >gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A] Length = 254 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + +AVR+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G D K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197 Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271 +++G EG G+ +E AT + L++P ++LNV+ A AV Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242 >gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14] gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14] Length = 257 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L + LD V DP N+G I+R A F + I+ + + + + ++ G++ + I Sbjct: 105 KLTLALDDVQDPGNLGTIIRIADWFGIENIVCSMDTADIYNPKVIQATMGSIARVK-ITY 163 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++L L+++ G D K +QE+ + + +I+G EGKG+ P + A + Sbjct: 164 TDLKQYLKQIDK-STPIYGTLLDGKNIYQQELSSHGL-IIMGNEGKGISP---DIAAMVT 218 Query: 253 H-LHMPGIIKALNVSNA--AAVALYITQNHFAK 282 H L +P + + +++ A+A IT + F + Sbjct: 219 HKLLIPNYPEGKDTADSLNVAIATAITCSEFRR 251 >gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis 961-5945] gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136] Length = 261 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ + + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] Length = 176 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V +N+G++ RS AF + + + + K+A G + + + + Sbjct: 25 LIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVAWRYFA 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 + T+A++++ + + Q + ++ + A++ G E KG+ T + Sbjct: 85 SATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRHQRYAVVFGNEVKGVNQTTVDACNG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS A + ++ Sbjct: 145 CLEIPQFGTKHSLNVSVTAGIVVW 168 >gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera] Length = 1203 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 123 SPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAK 178 S ++ +R+SQ ++V ++ N+ + R+ F G I T + +++ Sbjct: 1039 SVAMERIRSSQQHFILVASLIDRIPNLAGLARTCEVFKAAGLAIADTNILHDKQFQLISV 1098 Query: 179 SASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235 +A + +P + + S++ L+K GF +GL + PL++ I KI L+LG Sbjct: 1099 TAE---KWVPIVEVPVSSVKVFLEKKKQEGFSILGLEQTANSVPLDKYIFPKKIVLVLGR 1155 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +G+ + + G++++LNV + A+AL+ Sbjct: 1156 EKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALW 1194 >gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] Length = 262 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 19/257 (7%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H SA L+ + + T+ AL + Sbjct: 7 RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPEM-CIVTEGALRHDEAQ 65 Query: 85 ANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137 A V + Q I D + G+ VH G+ L L +P D V +Q +V Sbjct: 66 A------IVSRIDEQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPDTV--AQTCIV 117 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V D N+G+ILRSA A + + + S+ + +S GA H ++I + Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVE 174 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A + + S + + + ++A + G EG G+ ++ T + P Sbjct: 175 AQTLIERLAVPVVITDSHGAEAIYDCDLSAELAWVFGNEGAGVSQAWRDAVTLRVTIPQP 234 Query: 258 GIIKALNVSNAAAVALY 274 G +++LNV+ AAAV ++ Sbjct: 235 GGMESLNVAAAAAVCVF 251 >gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo] gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo] Length = 222 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSPSESAVLAKSASGALEH 186 R + L VL+ + HN A +R+ I +Y+ + L G+ + Sbjct: 35 RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNNKYTLNPDITL-----GSSQW 89 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I + N A+ ++ S G+ + S S+ LE N+K+A+ G E GL + Sbjct: 90 INLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVL 149 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + M G ++ N+S A A+ +Y Sbjct: 150 EAADLCIKIPMYGFTQSYNISVAVAIVMY 178 >gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 260 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 8/145 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++L +N+ N+GAI RSA A G + + ++G H+ +++ Sbjct: 113 VVMLTRLNNLENVGAIARSAAALGVGGYVVPSSGPHPYGRRAIRVSTG---HVTRLKVHC 169 Query: 195 LTDALQKMH---SWGFQTIGLSSDSKK-PLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249 D LQ M G+ + + + PL + K ALILG E +G+ + E Sbjct: 170 YEDILQTMERLRELGYTLLAAEATPEAVPLARFGPVPKRWALILGNEEEGVPEEVLEKCD 229 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 ++ + M IK+ NV+ A A+ +Y Sbjct: 230 AVLQIEMEPGIKSFNVATAGAIIMY 254 >gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523] Length = 250 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A II T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + + L D LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFSYLETLADLKNISKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSIGEKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 178 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L ++ N+G++ R+A A D I+ T + + K+A GA +P+ ++ Sbjct: 30 LMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPWRHFADP 89 Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +AL + G + GL + +S+ + + + L++G E G+ + + Sbjct: 90 LEALSVLKGEGCKVFGLEIAENSRSYSSLQPDDYPLVLLVGNEVDGIGDELLARCDGVLE 149 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G +LNVS AA VAL+ Sbjct: 150 IPQYGTKHSLNVSVAAGVALF 170 >gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] Length = 290 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 25/168 (14%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 S LD ++ V DP N G ++RSA A C ++ + + +S +G Sbjct: 119 SAVLDDFDGHAMVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAG 178 Query: 183 ALEHIPYIRISNLTDALQKMHSWG-------FQTIGLSSDSKKPLEQEIKNDKIAL---- 231 +L H+P LT +W + +DS++P E D IA+ Sbjct: 179 SLFHLPI-----LTMGTDDFFAWCDTHELAVYAADVYGTDSRQP---ESLTDVIAMPETL 230 Query: 232 ------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + G E +GL + E + + + G ++LN+ +++V L Sbjct: 231 AGAKAVLFGNEARGLTKEVLERTDRIVSIPLYGKAESLNLGTSSSVML 278 >gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 178 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/165 (20%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+ A L T++ +++ L+++LD+V HN+G++ R+A AF + I + Sbjct: 6 LKNAELDRKTVEEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPP 65 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKI 229 + K+A GA E + + +++ ++++ + + + + K N Sbjct: 66 HKDIRKTALGATETVVWEYVNDTVALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTY 125 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++ G E KG++ + ++ + G +LN+S + V ++ Sbjct: 126 AVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMW 170 >gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + LD ++D N+G I+R+A AF+ G+I ++ + ++ ++ +P + Sbjct: 85 FLYLDKISDAGNMGTIIRTADAFNLSGVIISEDSCDIYNPKTIRATMASIFRVPIYFLKE 144 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L K + F+ I + + KP+++ + + L++G E G+ K E A + Sbjct: 145 --DELIKNN---FKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKI 199 Query: 255 HMPGIIKALNVSNAAAVALY 274 + + +LN AA + Y Sbjct: 200 PIRDSVDSLNAGVAAGIFAY 219 >gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299] gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299] Length = 204 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 17/143 (11%) Query: 145 HNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQK 201 HN+G I R A AF + I K Y+ G+ H+ ++ L+DA + Sbjct: 11 HNVGTIARCATAFGVRSVVLIGAKSYNTF-------GCKGSSNHVDFVHYPTLSDARVGL 63 Query: 202 MHSWGFQTI-GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 M G I G+ D P+E A I G EG GL + + ++ G+ Sbjct: 64 MERMGVTKILGVEICDGAVPIETHPFAQNTAFIAGNEGDGLTKQQKAICDGFVYIRQHGV 123 Query: 260 IKA-LNVSNAAAVALYITQNHFA 281 A LNV+ A+A+ ++ HFA Sbjct: 124 GTASLNVAVASALVMH----HFA 142 >gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus] gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus] Length = 890 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ + S S A + +P + Sbjct: 731 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRDKQFQHLSVS-AEQWLPLVE 789 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ +G+ +K L + +K L+LG E +G+ + Sbjct: 790 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 849 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 850 DVCVEIPQQGIIRSLNVHVSGALLIW 875 >gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 249 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLDH + N GA++R A F G++TT P V+ A + + Sbjct: 109 VVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 160 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L L + + ++ +D + L G+E GL P+ + A + L Sbjct: 161 AVERLTAGELPPGPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIAL 219 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++ + N++ + A+ LY Sbjct: 220 PMRSMVSSYNLATSVAMTLY 239 >gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 252 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLDH + N GA++R A F G++TT P V+ A + + Sbjct: 112 VVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 163 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L L + + ++ +D + L G+E GL P+ + A + L Sbjct: 164 AVERLTAGELPPGPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIAL 222 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++ + N++ + A+ LY Sbjct: 223 PMRSMVSSYNLATSVAMTLY 242 >gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170] gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170] Length = 268 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 13/152 (8%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGAL 184 +R + L++V + P NIGA+LR+A A + D ++ Y+P+ + +S+ G + Sbjct: 116 LRKNALILVAEAPEKPGNIGALLRTADAANLDAVLIANPKGDLYNPN----IVRSSVGCV 171 Query: 185 --EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 I S + D L+K F LS+ +P Q A+++G E GL Sbjct: 172 FTNQIGLGSTSQIIDFLKKKQINLF-CAALSAS--QPYTQVNFEKAAAIVVGTESTGLSQ 228 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +T+ + M G I ++NVS +AA+ ++ Sbjct: 229 EWLNASTNNIIIPMEGEIDSMNVSVSAAILIF 260 >gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 467 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 PQ + E +A+ + P P ++ ++VLD + DP N+G ++RSA AF Sbjct: 79 PQAFAAVADTETPQGLMAVASIPQTEP-----QHGDRVLVLDAIQDPGNVGTLVRSAEAF 133 Query: 158 SCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----- 208 I+ T Y+P + +++ G L + I DA + +W + Sbjct: 134 GFGEIVFGTGTADPYAPK----VVRASMGGLFRVNAI----AGDAEAYLRAWRDRHPDGL 185 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEG-KGLRPKTQETATSMAHLH 255 + ++D+++ ++ ++A+++G EG + R + Q H H Sbjct: 186 VVATAADARERCDEAPMAGEVAMVIGNEGPRRERRRVQAGTAVRGHPH 233 >gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus] Length = 1407 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S+L++V ++ P N+G + R+ F ++ + S S A + +P + Sbjct: 1248 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRDKQFQHLSVS-AEQWLPLVE 1306 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L D LQ+ + G+ +G+ +K L + +K L+LG E +G+ + Sbjct: 1307 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 1366 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1367 DVCVEIPQQGIIRSLNVHVSGALLIW 1392 >gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136] gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136] Length = 257 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V L + LD V DP N+G I+R A F + I + + + ++ GA+ + Sbjct: 98 VTEQSLCLALDDVQDPGNLGTIIRIADWFGIEHIFCSSGTADVYNPKTIQATMGAIARVK 157 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + NL D L+ G D + QE+ + I +I+G EG G+ + E Sbjct: 158 -LHYCNLPDFLKSASQKNTPIFGTFLDGENIYTQELPANGI-IIMGNEGNGISKQIAEMV 215 Query: 249 T 249 T Sbjct: 216 T 216 >gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 258 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TKR + + + ++ G++ ++ Y+ Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRATMGSILNVNLYYLEK 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 S + + L K +++ + L + + E+K +K A++ G EG G+ Sbjct: 170 SKIINFL-KENNYSIISTYLDKTAIPYNKIELK-EKNAIVFGNEGNGISSDFINITDYKT 227 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 228 IIPILSNTESLNVAVATGIILY 249 >gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae LPCoLN] Length = 265 Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 26/158 (16%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184 +N+Q ++++ V P N+GAILR A DG+I Y+P+ + +S+ GA+ Sbjct: 112 KNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPN----VVRSSLGAV 167 Query: 185 EHIPYIRISNLTD-ALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +P + IS L K W +T+ S + P AL+ G+E Sbjct: 168 FSLPILSISREEGKELFKQEGWTVFVTSPRAETMYFSKNYLGP---------TALVFGSE 218 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL S L M G +LN++ + A Y Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAY 256 >gi|257482401|ref|ZP_05636442.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 112 Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L ++P R LA R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 VHQG+ + +P +L LD S LL+VLD V DPHN+G Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLG 112 >gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029] gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183] gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029] gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183] Length = 265 Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 26/158 (16%) Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184 +N+Q ++++ V P N+GAILR A DG+I Y+P+ + +S+ GA+ Sbjct: 112 KNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPN----VVRSSLGAV 167 Query: 185 EHIPYIRISNLTD-ALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +P + IS L K W +T+ S + P AL+ G+E Sbjct: 168 FSLPILSISREEGKELFKQEGWTVFVTSPRAETMYFSKNYLGP---------TALVFGSE 218 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL S L M G +LN++ + A Y Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAY 256 >gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX] gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX] Length = 184 Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++++ ++++ V P N+G+ILR+A F D + T E + K+A G + + Sbjct: 22 HNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQTKVRWE 81 Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + +A+ + G++ + L + PL + + L +GAE G P Sbjct: 82 KTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPALLAAVD 141 Query: 250 SMAHLHMPGIIKALN 264 ++ ++ G + +LN Sbjct: 142 AVTYIPQTGRVGSLN 156 >gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 261 Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD V DP N+G I+R A + II TK + + + ++ G++ ++ + Sbjct: 113 LVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLFYLEK 172 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 + ++ + + I D + +IK +K A+I G EG+G+ + + Sbjct: 173 -QEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEGRGISDEFVSISDCKTV 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A+A+ LY Sbjct: 232 IPILSNTESLNVAVASAIILY 252 >gi|326429925|gb|EGD75495.1| hypothetical protein PTSG_06570 [Salpingoeca sp. ATCC 50818] Length = 1687 Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 74/148 (50%), Gaps = 4/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 + S+L++V ++ N+G + R+ F+ ++ ++Y+ ++ S +H Sbjct: 1531 QRSKLVVVASLISLGTNLGGLSRTCEIFNVGMLVLAAEKYTRTKEFRALSVTSERWQHFE 1590 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 ++ +NLT+ L+ M G+ +G+ + ++K + L+LG E KG+ P T Sbjct: 1591 FVEPANLTEWLRSMKQQGYTIVGVEQTADSVSLPQVKFPEYTVLLLGDEAKGI-PADLLT 1649 Query: 248 ATSM-AHLHMPGIIKALNVSNAAAVALY 274 T + + G+ ++LNV +A++ +Y Sbjct: 1650 ETDVNVEIPQKGVTRSLNVHVSASLLIY 1677 >gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex Length = 277 Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++++ E + + P + D ++VLD V NIGAI Sbjct: 77 IPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAI 136 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGALEHIPYIRISNLTDALQKMHSW 205 +R+++A GI+ S+ A +A +++ G + +P + +++ +A+ + Sbjct: 137 VRTSLALGAAGIVLVD----SDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDN 191 Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L +D ++ + D++AL+ G+E G QE + + M ++LN Sbjct: 192 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 251 Query: 265 VSNAAAVALY 274 VS + +AL+ Sbjct: 252 VSVSVGIALH 261 >gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018] gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 321 Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 17/150 (11%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R A C ++ ++ L +S +G+L H+P + +S D Sbjct: 161 QVRDPGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAGSLFHLPVVTMSE-DDWF 219 Query: 200 QKMHSWGFQTIG---LSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRPK 243 S + I +++KKP L + A++ G E +GL + Sbjct: 220 DWTKSLKIRVIAADIYGTENKKPKSFANLLKPLSDDLNKGYNEGSNAILFGNEARGLPEE 279 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + + G +++N++ +AAV L Sbjct: 280 ILNRVDEISVIPIYGKAESMNLATSAAVML 309 >gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] Length = 264 Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 28/261 (10%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81 R++ K+++ Q + ++L G H AAL P+ +F +A A Sbjct: 13 RDNPLLKELRKLAQDPGAYRRLGRVWLEGDHLCRAALARGIRPAVAVFSESFWPSAPA-- 70 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----M 136 +W ++ +KTV +V + + LE+ + LD +LL + Sbjct: 71 EWASSA-----IKTV-------VVDDDLLRAVSGLESPAPMGFVLDLPARPELLPDAPSV 118 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195 VLD + D N G+ILRSA AF +I K + + + ++ GA H I + Sbjct: 119 VLDRLQDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGMGA--HFGLRLIEGVE 176 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 DAL ++ + SS L + A +LG EG+G+ + A+ + Sbjct: 177 ADALDELK---VPLVATSSHRGDWLHEARLPHPCAWLLGHEGQGVSAALEARASHHIRIA 233 Query: 256 MPGIIKALNVSNAAAVALYIT 276 PG ++LNV+ AAA+ L+ + Sbjct: 234 QPGGEESLNVAAAAAICLHAS 254 >gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] Length = 230 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + + S L +A+G+ + Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTSRMKTLVSTAAGSNSWVQV 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248 + DA+ + G Q + + + +++ + ++LG E G+ A Sbjct: 74 KTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDVDYTRPTCILLGQEKTGISADALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G++++LNVS A+A+ LY Q Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164 >gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] Length = 230 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185 R L + L+ V+ PHN+ AI+R+A A + TT+ Y+ SA + S Sbjct: 16 RQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQVKT 75 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244 H +++ A+ + S Q + K +EI + +++G E G+ + Sbjct: 76 H------THIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEA 129 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A+A+ LY Q Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas arsenicoxydans] Length = 265 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R Q ++LD V DP N G+I+RSA A + + + + S + ++ GA H Sbjct: 114 RLLQSAVLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGA--HF-L 170 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + I D + I SS ++K L +A + G EG+G+ AT Sbjct: 171 MEIFENVDLEALIARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALAT 230 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + G I++LNV+ ++AV + Sbjct: 231 HQITIPHLGAIESLNVAASSAVCFF 255 >gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 12/182 (6%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 P+ I+++ G ++ LAL P++ A++ LL LD V DP N+G +LR+ Sbjct: 82 PKQIERVSGLKSPRPLLALCEIPIIEAP-QALQQPTLL--LDDVQDPGNVGTLLRTCDWM 138 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ T+ + S + ++ GAL + R ++ T L + IG D Sbjct: 139 GIRQVLCTEGCADVYSPKVLQATMGALARVQVYRYTDRTALLTMLTQTEIPVIGTFIDG- 197 Query: 218 KPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSNAAAV 271 PL + L+LG EG G+ + +A + +P + ++LNV+ A A+ Sbjct: 198 APLRTLRLAPEQPYILVLGNEGNGI--SSDLSALVSQRITIPSPVDSHCESLNVAVAGAI 255 Query: 272 AL 273 + Sbjct: 256 VM 257 >gi|146071500|ref|XP_001463133.1| hypothetical protein [Leishmania infantum] gi|134067216|emb|CAM65483.1| conserved hypothetical protein [Leishmania infantum JPCM5] gi|322496565|emb|CBZ31635.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 545 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+ + DP NIG ILR+A F D +I +++ + S +A ++++++G LEH+ + S Sbjct: 253 VLFLERIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHLRVYQAST 311 Query: 195 LTDALQKM--HSWGFQTIGLSS 214 + A + W LSS Sbjct: 312 SSAAFLRASRQVWASAVPSLSS 333 >gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 206 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + + D Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHM 256 A+ + G Q + K +EI + +++G E G+ + A + M Sbjct: 59 AVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALALADRDIIIPM 118 Query: 257 PGIIKALNVSNAAAVALYITQNH 279 G++++LNVS A+A+ LY Q Sbjct: 119 IGMVQSLNVSVASALILYEAQRQ 141 >gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102] gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102] Length = 610 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++L V DP N+GA+LR+A ++ TK+ S + + K+A+GA E + ++ Sbjct: 421 FVLLLHEVMDPGNLGAMLRTARFLGAAAVVITKQTSSPITPTVVKAAAGAAEELAIFSVA 480 Query: 194 NLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIA-----------LILGAEGKG 239 + L+ G+++ + +S S Q++ D++A L+LG EG+G Sbjct: 481 DPVAFLEGSQKAGWESYVAVAPASGSSNSARQQVTADELAEEDPLREKPCILVLGNEGEG 540 Query: 240 LRPKTQETATSMAHLHMP----GIIKALNVSNAAAV 271 L K A+ + + +LNVS AAA+ Sbjct: 541 LSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAAL 576 >gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus] Length = 274 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++++ E + + P + D ++VLD V NIGAI Sbjct: 74 IPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAI 133 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGALEHIPYIRISNLTDALQKMHSW 205 +R+++A GI+ S+ A +A +++ G + +P + +++ +A+ + Sbjct: 134 VRTSLALGAAGIVLVD----SDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDN 188 Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L +D ++ + D++AL+ G+E G QE + + M ++LN Sbjct: 189 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 248 Query: 265 VSNAAAVALY 274 VS + +AL+ Sbjct: 249 VSVSVGIALH 258 >gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 255 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167 Q LA+ P + T D R+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAILEQPQYTLTPDIARHS-LCLALDDVQDPGNLGTIIRLADWFGIEDIICSQNTVD 141 Query: 168 -YSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 Y+P K+ + I +R+ ++L D ++ G D + EQ + Sbjct: 142 VYNP-------KTVQATMGGIARVRVHYTSLPDFIRSQGK-EIPVFGTFLDGQNMYEQPL 193 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +++G EG G+ + + A L++P + S + VA+ Sbjct: 194 SANGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGQETSESLNVAI 239 >gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 247 Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R L + +++ + NIG ++R+A AF+ D I+ +R++ GA+ Sbjct: 94 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWN----------RRGAMVTD 143 Query: 188 PYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 Y + + TD + M Q + + ++ PLE ++ L+ G EG G+ P+ Sbjct: 144 RYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPE 203 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ A + G +++N AA +A++ Sbjct: 204 AQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 234 >gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens] Length = 178 Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY-SPSESAVLAKSASGALEHIPYIRISN 194 +VLD+V N+G+I RSA C ++T +P +A LAK+A GA + + + Sbjct: 25 VVLDNVRSAENVGSIFRSADCGRCLEVVTCGFTPNPLSTAKLAKTAFGAEAAVAHRHFES 84 Query: 195 LTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247 A++++ + W +T+ ++ D +AL+LG E G+ Sbjct: 85 TKAAVEELKAAGVSVWALETVDGAAPYAAAPLPPGAFDGPGVALVLGNEVTGVDGAVLPL 144 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++NV+ AA ++ Sbjct: 145 VDAVVEIPTFGTKNSMNVACAATTVIF 171 >gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 250 Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++V D + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + I+NL LQ+ W T G+S +K E K L+ G E G Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T + L I++LNV+ AA + L+ Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242 >gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 252 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 23/172 (13%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167 Q LA+ P + + D VR S L + LD + DP N+G I+R A F + II ++ Sbjct: 81 QQVLAVFEQPQYTLSPDFVRQS-LCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVD 139 Query: 168 -YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225 Y+P K+ + I +++ + T + +HS G + G D + EQ + Sbjct: 140 VYNP-------KTIQATMGGIARVKV-HYTSLPEFIHSLGDAPVFGTFLDGENMYEQPLS 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271 + + +++G EG G+ + + A L++P ++LNV+ A AV Sbjct: 192 TNGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGKETSESLNVAIATAV 240 >gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 119 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 46/102 (45%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES ++A G EH+ I ++ D L G+ + SSD + L +K+ L Sbjct: 9 ESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVL 68 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +LG E L +E ++ G +++LNVS A V L Sbjct: 69 VLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLL 110 >gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 245 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185 A R +L + +++V+ NIG+I+RSA AF+ G II +R++ + V + + Sbjct: 91 AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 148 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H P + L + G++ IG+ + +PLE ++ ++ G+EG+G+ + Sbjct: 149 HHP-----EPGELLDWAAASGYEVIGIDNGPGARPLEAAALPERCLMVFGSEGEGISAEL 203 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 S+ + G +++NV+ AAAVA++ Sbjct: 204 SAGCASLLRIGQYGSTRSINVAAAAAVAMH 233 >gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM 17132] gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM 17132] Length = 171 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASG 182 AV L ++LD + N+G+I R++ DG K Y +A + K+A G Sbjct: 14 AVEKLNLDLILDDIRSMSNVGSIFRTS-----DGFRVGKLYLCGITATPPHREIEKTALG 68 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239 A + + + ++ + G++ + L +D+ L+ + IK+ K ALILG E G Sbjct: 69 ATASVDWEYKEDALALVRALKQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFG 128 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + A + + G + NVS +A + L+ ++FAK Sbjct: 129 VNEELIAEADEVIEIPQFGTKHSFNVSVSAGMFLW---DYFAK 168 >gi|154331091|ref|XP_001561985.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059307|emb|CAM37009.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 585 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+ + DP N+G ILR+A F D ++ +++ + +AV +++++G LEH+ R S Sbjct: 270 VLFLERIIDPTNVGGILRTAFFFGVDHVVLSRQCATCTAAV-SRTSTGFLEHLCVYRAST 328 Query: 195 LTDALQK 201 + A + Sbjct: 329 SSAAFLR 335 >gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] Length = 294 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 22/198 (11%) Query: 99 QTIDKIVGKEAVHQGLALETAPL--LSPTLDAVRNSQ-----------LLMVLDHVNDPH 145 Q I +V EAV GLA + + L+ D+V++ L + + DP Sbjct: 92 QGIGALVRTEAVTGGLAPDASSFAALASLADSVKSPGPVETAGHPARPLFLACWQLRDPG 151 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQ-K 201 N G I+R A A C +I + + +S +G+L H+P + +S T+A + Sbjct: 152 NAGTIIRVADAAGCPALILVDDCVDVTNPKVVRSTAGSLFHLPIVTLSTDDFFTEAARLG 211 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDK-----IALILGAEGKGLRPKTQETATSMAHLHM 256 + G PL + + K + ++ G E +GL S + + Sbjct: 212 LPVCAADAYGTDQVEAIPLPDLMDSLKSSSQPLCILFGNEARGLDDSLINRCQSAVRIPL 271 Query: 257 PGIIKALNVSNAAAVALY 274 G ++LNV+ +A++ Y Sbjct: 272 YGRAESLNVAMSASIIAY 289 >gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 276 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 13/191 (6%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148 P + ++P I G E +AL P + L+ + + L++VLD + DP N G Sbjct: 85 PLKLVSLPDALFAGIAGTETTQGVIALVQPP--AWKLEQLFQRPALVVVLDGLQDPGNAG 142 Query: 149 AILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHS 204 I+R+A AF G++ K SP L ++++G+L +P+ + + AL + Sbjct: 143 TIVRAAEAFGATGVVFLKGAVSPYNPKTL-RASAGSLFRVPFLHGVDAAVACTALAQHQV 201 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKAL 263 F + + S+ ++ L++G E G+ + A ++ +P + +++L Sbjct: 202 ELFAGVPAGASSRTLAAVDLAR-PCGLVIGNEAHGVSRGLRAAAHDVS---IPTVGVESL 257 Query: 264 NVSNAAAVALY 274 N + AA++ LY Sbjct: 258 NAAMAASILLY 268 >gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] Length = 269 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D + + + P + SA AL +P+ R ++ L Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAASGAALLDLAQR 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + L++ + L+LG EG GL A + PG +LN Sbjct: 192 HDLTPLALTPGGHETLDRLAPPSRALLLLGTEGPGLPEALMARARRLRIAMAPG-FDSLN 250 Query: 265 VSNAAAVALY 274 V+ A A+AL+ Sbjct: 251 VATAGAIALH 260 >gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC BAA-286] Length = 263 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 33/157 (21%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPS------------ESAVLA 177 +++L+ V P N+GAILR+A A D +I T Y+P+ ++AV Sbjct: 116 FIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSVGCLFTVKTAVC- 174 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 S+ AL+ + + +I + LQ W +Q S S A+++G E Sbjct: 175 -SSRDALDFLRHKKIKSFAAELQASQ-W-YQDTDFSIPS-------------AIVMGTEA 218 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL A + + M G I +LNVS + AV + Sbjct: 219 DGLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTF 255 >gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 218 Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++RS +F + + + + + A GA + + Sbjct: 28 RTNHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNVKR--IDREIAMGAQKWVDV 85 Query: 190 IRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R S+ ++ + G++ + S D+ + + +I +K A+ G E +GL + Sbjct: 86 QRHSSAKHCIENLRKQGYKIVATSPHKDAHRLEDFDI-TEKAAIFFGRETEGLSDTVLDM 144 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A ++ M G ++LN+S +AA+ L Sbjct: 145 ADDFIYIPMVGFTESLNISVSAAITL 170 >gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST] gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST] Length = 378 Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 28/164 (17%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V D++ +P+N+G+I+RS A S +I K + + +GA +P I Sbjct: 205 VVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLRGGAGAHFRVP---IYGP 261 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGLRP 242 +A Q +I + +D+KKP ++ D + L++G E G+ Sbjct: 262 IEAYQLPEHVRAGSIFVVADNKKPTDERNGFRWKHYDRIDYGSADHVVLVIGGETYGVSD 321 Query: 243 KTQETATS------------MAHLHMPGIIKALNVSNAAAVALY 274 + T +AH+ + +++LN ++A +V LY Sbjct: 322 DIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILY 365 >gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185 R + +VL+ + HN A++RSA C GI + R S ++ +++ A L Sbjct: 30 RTDYVTVVLEDLFQSHNQSAVMRSA---DCYGIQHVHLIENRNSYDMTSTVSQGARDWLS 86 Query: 186 HIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRP 242 + + N T A + ++ + G++ + + + +I + K+A G E GL Sbjct: 87 IHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLEKGKMAFFFGTELTGLSD 146 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++LNVS AA+ +Y Sbjct: 147 LVIGQADEFVKIPMYGFTESLNVSVCAAITMY 178 >gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 224 Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R L + +++ + NIG ++R+A AF+ D I+ +R++ GA+ Sbjct: 71 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWN----------RRGAMVTD 120 Query: 188 PYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 Y + + TD + M Q + + ++ PLE ++ L+ G EG G+ P+ Sbjct: 121 RYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPE 180 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ A + G +++N AA +A++ Sbjct: 181 AQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 211 >gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] Length = 254 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 12/174 (6%) Query: 111 HQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ + P +D ++S +++ LD V + +N+GAI+RSA F +I Sbjct: 72 HQGVVAMIEEPVIPLIDEQIIDGWAKDSAVVLFLDRVGNSNNLGAIIRSAAFFGIPAVII 131 Query: 165 TKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T ++ A + A G +E + ++ L+ IG S + L Sbjct: 132 TDEDPQAKITTSAYRVAQGGMEFVTIYHTRSIQWLLRACEG-KITRIGADHRSFRNLNSL 190 Query: 224 IK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ +ILG E GL +++ + + G I++LNV+ A + L Sbjct: 191 PTLLSPDEATMIILGNEETGLSEASKKACDHLVKIPGSGAIESLNVAQAGTLFL 244 >gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 253 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 19/145 (13%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-----ALEHIPY 189 ++VLD+ + N+GA++R A F G++TT P + +S +G A+E +P Sbjct: 114 VVVLDNPRNLGNVGAVVRLAAGFGATGVVTTGDIDPWHPNAV-RSGAGLHFATAVERLP- 171 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 DAL + G + L ++ + I +D + L G+E G+ P+ ++ AT Sbjct: 172 ------GDALPE----GPLYV-LDAEGEDIRSVTIPDDAL-LAFGSERHGISPELRKRAT 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + L M + + N++ + A+AL+ Sbjct: 220 RLVALPMRPQVSSYNLATSVAMALF 244 >gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 169 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSES----AVLAKSAS 181 R +L +V+ +++ NI A+L A AF CD ++ + SP + ++ Sbjct: 2 RIPKLYLVITNISKRPNIRALLELAAAFGCDKVLVVGQQKFDISPKGTDIPRSIREHVER 61 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGL 240 G L HI R S+ + + S G + +G+ +P+E + A ++G EG+G+ Sbjct: 62 GGL-HIE--RYSSWEACINFLSSHGIRLVGVEIHVDARPIEAYLDYKDTAFLMGNEGQGI 118 Query: 241 RPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY----ITQNHFAK 282 K ++ + + G +LNV AA++ L+ Q F+K Sbjct: 119 NEKHMKSCDAFVTIPQYGGGTASLNVYVAASIVLHSFHQWQQGEFSK 165 >gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 217 Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 5/146 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188 R + + ++ V HN A++R+ F + + R+ + AK A GA + + Sbjct: 25 RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---LDAKIAMGAQKWVD 81 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 R N + + + G+Q + + + + K A G E +GL + Sbjct: 82 VFRYDNTQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQ 141 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LN+S A A+ L Sbjct: 142 ADTFLKIPMVGFTESLNISVAVAIVL 167 >gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG 19424] gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 260 Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R Q ++LD V D N+G+ILRSA A + + S ++ GA H+ Sbjct: 110 RIEQDCIILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFHLNI 169 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L ++ + SS ++ + +A ++G EG G+ T Sbjct: 170 VEHCTLEALAPRL---AIPLLATSSHAEAAVFDTDLRGPVAWVVGNEGAGVSEGWMAHVT 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ A A+ L+ Sbjct: 227 RKVGIPQPGGMESLNVAAATAICLF 251 >gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 158 Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIPYI--RI 192 +VL P N G + R+A A +I + S + K A L++ PY+ R+ Sbjct: 4 LVLFQPEIPQNAGNVARTAAALGFPLHLIRPLGFRLSHPGL--KRAG--LDYWPYVDLRV 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + +A G + + S+ ++ L Q + L+ G E +GL P+ S+ Sbjct: 60 HDTWEAFLAALPPGARVLAFSARGERNLYQARFQEGDYLLFGPETRGLPPEVLGRFPSL- 118 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 ++ MPG +++LN++ A VA Y Sbjct: 119 YIPMPGPVRSLNLAVAVGVAAY 140 >gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia] Length = 1396 Score = 42.7 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMH 203 N G + R+ F C ++ + + A S S A +H+P + I +L + LQ Sbjct: 1259 NFGHLTRTCEIFGCRELVLPNKKILQDEQYQAVSVS-AEQHLPILEIKEDHLMNYLQLKR 1317 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+Q + L S+ K DK L+LG E GL + E + + G+I++ Sbjct: 1318 LQGYQLVALEQTSQSKSIVNFKFDKKTVLVLGREKTGLPIEYIELMDNCVEIPQYGVIRS 1377 Query: 263 LNVSNAAAVALY 274 LNV +A + ++ Sbjct: 1378 LNVHISAVICVW 1389 >gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] Length = 182 Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++L ++ N+G++ R+A + I+ + + ++K+A GA +P+ I Sbjct: 30 VVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGADLSMPWEYIP 89 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251 + A+ +M + G + GL ++ +P + + + L+LG E +G+ + + Sbjct: 90 DPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVVDFPLCLVLGNEVQGIDDSLLRLSDGV 149 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + G +LNVS AA VAL+ Sbjct: 150 LEIPQYGTKHSLNVSVAAGVALF 172 >gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] Length = 278 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPY 189 +S L++ LD V DP N+G I+R A F ITT SP + A K + I Sbjct: 127 DSDLVLALDGVQDPGNLGTIIRIADWFG----ITTLFCSPDTADAYNPKVVQATMGSIAR 182 Query: 190 IRI--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R+ ++L D L +H G + + +Q + + + +++G EGKGL ++ Sbjct: 183 VRLVYTDLKDLLDALHP-DTPVYGTLLNGEDIYQQSLSRNGL-IVMGNEGKGL---SKAI 237 Query: 248 ATSMAH-LHMPGI------IKALNVSNAAAVALYITQNHF 280 A+ + H L +P ++LNV+ A AV + F Sbjct: 238 ASRVTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRRRF 277 >gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 278 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 11/146 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD + DP N+G I+R+A+A + ++ T ++ + +SA+GA +P SN Sbjct: 127 LLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAAGAHLFLPV--ESN 184 Query: 195 LT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETA 248 + D +Q+ Q L +++ P + D ALI+G E G + A Sbjct: 185 INWDEIQERVRAHCQERVLMAEAHSP---NVYFDLDLVAPFALIIGNEAHGPSQSARALA 241 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T + I++LN + AA + LY Sbjct: 242 TIPVAIPQAAGIESLNAAMAAGILLY 267 >gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX] gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX] gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768] gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222] gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074] gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301] gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC] gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC] Length = 269 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG+I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q + ++ + + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] Length = 238 Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK-SASGALEH 186 R L ++ D VN P N+ A++R+ CD GI + P E + +A G+ + Sbjct: 16 RQPDLSLIADQVNKPRNLSALVRN-----CDAVGIHSIHTVVPKEGYRTYRGTAKGSDYY 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245 + ++ +A+ + G + + K +E AL++GAE +G+ Sbjct: 71 VKSRAHESVENAISVVRQQGMKVVAAHFSDKAIDYREFDFTQPCALLMGAEKQGVSDVAA 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + + M G++ +LNVS AA + L Q+ K Sbjct: 131 QMSDAHVVIPMMGMVSSLNVSTAAGIILVEAQHQRLK 167 >gi|117624802|ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1] gi|115513926|gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1] Length = 123 Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 46/102 (45%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES ++A G E++ I N+ + L G+ + SS+ KPL + K+ L Sbjct: 13 ESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 72 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +LG E +GL ++ + G + LN+S A V L Sbjct: 73 VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLL 114 >gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15] Length = 245 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 5/152 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188 R L ++ D V+ P N+ AI+RS AF G+ P E K+A G+ + Sbjct: 16 RQPDLSVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPKEGFRAFRKTAGGSYNWVT 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ +A+Q + G + SD +ILG E G+ Sbjct: 73 THTHRSMDEAIQSLKVQGHKLYAAQLSDRAIDFRDVDYTLPCTIILGNEVDGVSVDAAAQ 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M G++++LNVS+A A+ L Q Sbjct: 133 ADEHIVIPMMGMVESLNVSSACAIVLSEAQRQ 164 >gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118] gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118] Length = 264 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P + A++ ++LD V D N+G+ILRSA AF +I K + S + ++ GA Sbjct: 105 PLVAALQPVMASVILDRVQDAGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGMGA 164 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKG 239 H I + A + + + SS L Q I N + A LG EG+G Sbjct: 165 --HWGLQLIEGVALADLALLA--VPIVVTSSHRGSYLHQAIANQALPMPCAWALGHEGQG 220 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + A + PG ++LNV+ AAA+ L+ Sbjct: 221 VSAELEALARLHVRIAQPGGEESLNVAAAAAICLH 255 >gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] Length = 229 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + LD V+ HN+ AI+RSA A GI P L S SG ++ Sbjct: 16 RQIDLTLCLDEVHKHHNLSAIVRSADAV---GIHHIHSVWPEGGKRLTSSTSGGSKNWTE 72 Query: 190 IRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRP 242 I + + DA+ + S +T + + EQ + I A+ILG E G+ Sbjct: 73 NHIHHTVEDAIATIRS---RTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISD 129 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + M G++++LNVS AAA+ LY Q Sbjct: 130 QALALADQHIIIPMVGMVQSLNVSVAAAIILYEAQ 164 >gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Mocydia crocea] Length = 239 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 5/154 (3%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + A+R L + L++V+ PHNI A++R+A A GI S+ +A+ Sbjct: 12 VSAMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSN 68 Query: 186 HIPYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H ++ + + + + + G Q + ++ Q +ILG E G+ + Sbjct: 69 HWVKVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAGISKQ 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162 >gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti] gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti] Length = 451 Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 19/176 (10%) Query: 122 LSPTLDAVRN-------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTK 166 L PTL+ + N L++V VN N+G + RS+ F+ I + K Sbjct: 273 LEPTLELLTNLPEKLRLKKKGNVEGLIVVASLVNRAPNLGGLARSSEIFAVKQYIVNSLK 332 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225 E L+ +A L ++ ++ + D L +M S G+ +G + +P++Q Sbjct: 333 DLENKEFQALSMTAEKWL-NVAELKSFQIVDYLLEMKSKGYSVVGAEQTTGSRPIQQIEF 391 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + L+LG E +GL +A + G++++LNV A+ + Y Q+H Sbjct: 392 PKRSILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 447 >gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] Length = 245 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L + DP N+G +LRSA+AF + + +++ GA+ +P R S Sbjct: 97 LCVYLHGIADPGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVFQVPLARAS 156 Query: 194 NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 AL TI L + + PL + + L++GAE GL E A Sbjct: 157 GDVAALPG------TTIALDAHAGSGPLHGPL-GEPATLLIGAERAGLPEALLEACDRTA 209 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + P ++LN + AA +ALY Sbjct: 210 RI--PIRSESLNAAMAATIALY 229 >gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652] gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652] Length = 274 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 13/196 (6%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL------ETAPLLSPTLDAVRNSQLLMVL 138 P PV + IVG +H+G LAL + A L+ DA+ L++V Sbjct: 76 RFPADVPVYVAEADALAGIVGFH-LHRGVLALGRREERDGAALV----DALPERALVLVG 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLRVPHRRGGKALDL 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + ++AL++G EG+GL P+ A + Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGL-PEALLARFHSARIPQSD 249 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 250 ELDSLNAATATGIALF 265 >gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii] Length = 270 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRIS 193 +++LD V NIGAI+R+ A GI+ L +++ G + +P + ++ Sbjct: 118 VVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSLPIV-LA 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +AL G + + +D K + E + ++++ L+ G+E G + AT Sbjct: 177 TRDEALAFFRDGGMRPVVFEADGKLSIGELDGIDERLVLVFGSEKTGPSGEFAGVATESV 236 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++LNVS +A +AL+ Sbjct: 237 SIPMNPAAESLNVSVSAGIALH 258 >gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 256 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V D N+G+ILRSA AF ++ K + S + ++ GA H I L Sbjct: 115 VILDRVQDAGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLRAGMGA--HFGLRLIEGL 172 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 LQ + + + SS +++ A +G EG+G+ A+ A + Sbjct: 173 E--LQDLDALKVPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSEALMAKASVFARIG 230 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 PG ++LNV+ AAA+ L+ + A Sbjct: 231 QPGGEESLNVAAAAAICLHASSLKLA 256 >gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] Length = 264 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 37/159 (23%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184 L+++ + P NIGA+LR+A A + D +I T Y+P+ + +S+ G + Sbjct: 116 LILIAEAPEKPGNIGALLRTADAANVDAVIIANPKTDLYNPN----IIRSSVGCVFTNQV 171 Query: 185 ------EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 E I +++ ++ ALQ + Q ++ A+++G Sbjct: 172 AVGTTTEIISFLKKQKVNIYCAALQASEHYHLQDFTTAT---------------AIVVGT 216 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL + ++ AT + M G I ++NVS AA + +Y Sbjct: 217 EATGLSDEWRKNATQNIIIPMQGEIDSMNVSVAAGILIY 255 >gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 269 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G + R+A AF D ++ + ++G +P+ R+ + L Sbjct: 132 NVGGLFRNAAAFGADAVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALLALCERH 191 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + L+ + + Q + L+LG EG GL A + PG + +LNV Sbjct: 192 GIVPLALTPGGGEEIAQLPPLPRAMLLLGTEGTGLPDALMARARRVRIAMAPG-VDSLNV 250 Query: 266 SNAAAVALY 274 + A AVAL+ Sbjct: 251 AAAGAVALH 259 >gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 216 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 15/154 (9%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D R+S + + + ND NIG ++R+A AF+ + + R + + LE Sbjct: 60 IDTRRHSLHIAIENFENDA-NIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLE 118 Query: 186 HIPYIRISNLTDALQKMHSWGFQ-TIGL----SSDSKKPLEQEIKNDKIALILGAEGKGL 240 H D + ++ +W + I + ++ PLE ++ L+ G EG G+ Sbjct: 119 H---------HDTVTELMAWAREHEIAVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGV 169 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + QE+A + G +++N AA +A++ Sbjct: 170 TAEAQESAEMTCSIAQFGSTRSINAGVAAGIAMH 203 >gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 289 Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 12/167 (7%) Query: 120 PLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 PL + VR +L + LD + P N+G+I R+A +F I + + + Sbjct: 104 PLEEGGCEQVRKIIELDLYLDDIRSPFNVGSIFRAAESFGVRKIFLSPGSADPRHPRAQR 163 Query: 179 SASGALEHIPYIRISNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 SA G ++ +P+ R S ++M H+ + + L + E I L++G+E Sbjct: 164 SAMGCVDIVPWCRSS-----FEEMQTHTTSNKIVALETGGCPLHEFHFPAGGI-LVIGSE 217 Query: 237 GKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ P E A+ + G +LNVS A + L+ + F Sbjct: 218 ELGVSPALMEQASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQF 264 >gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] Length = 176 Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188 +++VLD++ +NIG++ R+A AF + K Y +A+ + K+A GA E + Sbjct: 25 IILVLDNIRSLNNIGSVFRTADAF-----LIEKIYLCGITAIPPHKDIRKTALGATESVS 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245 + + + ++++ + + + +D+ + L + + K K AL+ G E KG+ + Sbjct: 80 WEYRKDTLELIKELQADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGNEVKGVSQEVV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S +A + ++ Sbjct: 140 SASDVVLEIPQFGTKHSLNISVSAGIVIW 168 >gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 266 Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189 L++V + P NIGAILR+A A + D +I T Y+P+ + +S+ G L Sbjct: 118 LILVAEAPEKPGNIGAILRTADAANIDAVIIANPKTDLYNPN----IIRSSVGCL-FTNQ 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + + ++S G + ++ A+++G E GL + A Sbjct: 173 IATGSTEAIINFLNSKGINIYAAILQESQEYHKQDFTTPTAIVVGTEATGLSNYWRNAAK 232 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G I ++NVS AA + ++ Sbjct: 233 KNIKIPMQGAIDSMNVSVAAGILIF 257 >gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 281 Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 25/153 (16%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS--ESAV----LAKSASGA 183 L+++ + P NIGA+LR+A A + D +I T Y+P+ S+V K A+G Sbjct: 135 LILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGCVFTTKIATGT 194 Query: 184 L-EHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E I Y++ N+ + S + T+ +S S A+++G E GL Sbjct: 195 TSEIIAYLKEHNIATYCAALTASKIYTTVDYTSGS-------------AIVVGTEATGLS 241 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G I ++NVS AAAV ++ Sbjct: 242 KEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIF 274 >gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 256 Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 108 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D L +I+ +K A+I G EG G+ Sbjct: 168 SEIINFLKENN---YSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYK 224 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 225 TIIPILSNTESLNVAVATGIILY 247 >gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 265 Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+V + P N+G I+RSA DG+I + + + + +++G +P + Sbjct: 118 LLVVAQSIEKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMCFSLPIAEAA 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D + + + + + K IA+I+GAE GL + + ++ Sbjct: 178 S-QDTINYLKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSINVK 236 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ A + LY Sbjct: 237 IPMLGKADSLNVATATTLLLY 257 >gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 218 Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG+I+RSA AF+ D + I +R A++ + H + + D ++ Sbjct: 84 NIGSIVRSANAFAADTVHIVGRRRWNKRGAMVTDRYQHVVHH------ATIADLVEWARG 137 Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G I + + D LE ++ L+ G EG GL + A + G +++ Sbjct: 138 EGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSI 197 Query: 264 NVSNAAAVALY 274 N S AAAV ++ Sbjct: 198 NASAAAAVVMH 208 >gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] Length = 182 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 22/177 (12%) Query: 115 ALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSP 170 A E P P A + ++ V+ HNIG I+RSA AF + + +++++ Sbjct: 3 AAEELPAAEPCSSASGTAGPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNT 62 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLS-SDSKKPLEQE--IKN 226 S G+ H+ + L +Q + G + +G+ + P+ + + Sbjct: 63 FGS-------HGSDAHVAFKHFDTLQQCVQHLKDVEGCRVLGIEICEGALPVHEHPFTGS 115 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHL--HMPGIIKALNVSNAAAVALYITQNHFA 281 A +LG EG+GL + ++ H PG +LNV+ AA++ L+ HFA Sbjct: 116 SPTAFLLGNEGQGLSERQMALCDGFVYIPQHGPG-TASLNVAVAASIVLH----HFA 167 >gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum] Length = 1259 Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 29/228 (12%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 IF L+ KNA++ +W+ +KTV K + + AP+ + T+ Sbjct: 1032 IFYLIPRKNAVSATEWEN-------LKTVSDWEHFKFISFNHSDNNIQETYAPITTHTIA 1084 Query: 128 A------------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKR 167 + + + ++V + N+G + R+ F I+ T K Sbjct: 1085 SDNIQKKITPWKDFLSTSPSQENNFILVTTLIEKSTNLGGLSRTCEVFGIKQIVMRTAKI 1144 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S E L+ S+ ++E I ++ +L + M + G+ +G S+ + D Sbjct: 1145 ISDKEFKSLSMSSENSVE-ILEVKPEDLASFILNMKAQGYSVVGAEQTSESVKLDAFRFD 1203 Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+LG E +G+ P + G++++LNV A A+ ++ Sbjct: 1204 KKTVLVLGNEKEGIPPDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIW 1251 >gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG+I+RSA AF+ D + I +R A++ + H + + D ++ Sbjct: 85 NIGSIVRSANAFAADTVHIVGRRRWNKRGAMVTDRYQHVVHH------ATIDDLVEWARG 138 Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G I + + D LE ++ L+ G EG GL + A + G +++ Sbjct: 139 EGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSI 198 Query: 264 NVSNAAAVALY 274 N S AAAV ++ Sbjct: 199 NASAAAAVVMH 209 >gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 298 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 32/179 (17%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLA 177 L LDA +L+ VL V DP N G +LR+A A D ++ T Y+P Sbjct: 121 LEAVLDA--GPRLIAVLCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKA----V 174 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------- 228 +S +G+L H+P + +L+D G L++D L+ + D+ Sbjct: 175 RSTAGSLFHLPVVLGVDLSDLATACRERGIGV--LAADGYGQLDLDQLQDENAARRLGNP 232 Query: 229 -----------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + G E +GL A + + G ++LNV AA V LY + Sbjct: 233 GAESAYDLGRPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNVGTAATVCLYAS 291 >gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] Length = 284 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++L+ LD V DP N+G +LR+A A G++ S ++ G++ +P R Sbjct: 133 NEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMGSIFAVPVSR 192 Query: 192 ISNLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + A + G G ++D +KP + + L++G E GL Sbjct: 193 VGEAAFIEWRAGCRAPLIGTHMSG-ATDYRKP---DYASKGSVLVMGNEQAGLTDALANA 248 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G +LN++ A V L+ Sbjct: 249 CDTLVRIPQVGRADSLNLAVATGVMLF 275 >gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 227 Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 10/153 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGAL 184 A+R + ++ +++ N A++R AF + T + R+ P+ V G Sbjct: 36 AMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIV-----RGTD 90 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + R + +AL + S G++ + + + P ++ AL+ G E G+ Sbjct: 91 QWVDVRRHPSTGEALAALRSAGYRIVATTPHREDVTPETFDVAAGPFALVFGTEHAGISD 150 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + A + M G++++LNVS +AA+ +Y+ Sbjct: 151 EVIAGADEFLRIPMCGMVESLNVSASAAILIYM 183 >gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae] gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae] Length = 309 Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 17/111 (15%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 LDW TV PQ + I + V++ L +P L ++ D+ Sbjct: 74 LDWS---------DTVTPQKVIAIFTRPDVNR--------LYTPEYADAELLPLTLICDN 116 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + DP N+G I+RSA A C ++ TK + + ++ + A H+P I+ Sbjct: 117 IRDPGNMGTIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIK 167 >gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] Length = 260 Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R Q ++LD V D N+G+ILRSA A + + S ++ GA H+ Sbjct: 110 RIEQDCIILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFHLNI 169 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L ++ + SS + + +A ++G EG G+ T Sbjct: 170 VEHCTLESLAPRL---AVPLLATSSHADAAVFDTDLRGPVAWVVGNEGAGVSDGWMAHVT 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ A A+ L+ Sbjct: 227 RKVGIPQPGGLESLNVAAATAICLF 251 >gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] Length = 258 Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 12/159 (7%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSA 180 T+ A R ++ V++ + + N+ A++RSA A + RY S+ ++A Sbjct: 59 TVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQ-----RTA 113 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238 GA + T + G++ + L +D+ P+ AL+ G E Sbjct: 114 QGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTV-PIRDLDFTQPTALVFGNEDA 172 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G+ E + + + +PG ++ NVS AAAVALY Q Sbjct: 173 GVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQ 211 >gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14] gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14] Length = 286 Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188 +L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 123 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKA----VRASVGSLFHLP 178 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244 + A+ + G + + + L+ E+ ++ + A + G E GL T Sbjct: 179 VAVGVPVEQAVAGLKDAGVRILAADGAGEHDLDDELDDNTMGGPTAWVFGNEAWGLPEDT 238 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A ++ + + G+ ++LN++ AAAV LY Sbjct: 239 RALADAVVRVPIHGMAESLNLATAAAVCLY 268 >gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] Length = 248 Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM 202 P NIG++ R+ + C I+ + ++ + L + A + IRI L +AL Sbjct: 15 PENIGSVARACLNMGCGQIVLVEPWNWDQGKALPLATHHAGHLLENIRIHGTLAEALAP- 73 Query: 203 HSWGFQTI----GLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +S+ + T G + P +EQ K+A++ G E KGL + + + Sbjct: 74 YSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDKGLTNEETDLCNQL 133 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + +LN+S A V LY Sbjct: 134 LTIPTTDNLTSLNLSQAVMVVLY 156 >gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium] Length = 239 Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R L + L++V+ PHNI A++R+A A GI S+ +A+ H Sbjct: 14 AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 I+ + + +A+ + G Q + +++ ++I + +ILG E + + Sbjct: 71 VKIKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162 >gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] Length = 292 Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + D Sbjct: 135 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 194 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ + ++ K P+ +E+ A++ G E +GL + + Sbjct: 195 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 254 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 255 SVSIPIYGKAESLNLGTSAAVML 277 >gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 279 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 16/151 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L+ VL HV DP N G +LR A A D ++ T Y+P +++ G+L H+P Sbjct: 123 LVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243 + +A++ + G + L++D + + + A + G E GL + Sbjct: 179 AVGVPVEEAVRGLRDAGVRI--LAADGAGEDDLDDELDAGTMGGPTAWVFGNEAWGLPEE 236 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T+ A ++ + + G ++LN++ AAAV LY Sbjct: 237 TRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 269 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG+I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGIVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q + ++ + + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] Length = 228 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------------ITTKRYSPSESA 174 A R L ++++ V+ HN A+LRS CD + I T+ +PS Sbjct: 14 ARRQPDLTVLMERVHKWHNFSAVLRS-----CDAVGVLEAHLIPAAHGIPTEDQNPSRHT 68 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALIL 233 A ++ A + + + A + S GF K +E+ + ++L Sbjct: 69 --AATSGSAAKWVGLRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREVDYTRPTCILL 126 Query: 234 GAEGKGLRPKTQETAT-SMAHLHMP--GIIKALNVSNAAAVALYITQNH 279 G E G+ T+E AT + H+ +P G++++LNVS AAAV L+ Q Sbjct: 127 GTEKWGV---TEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 172 >gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] Length = 199 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 11/151 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++L +++ N GA+LRSA F ++ + + G L +I Sbjct: 13 KFYLILMNISKRQNFGALLRSACGFGVSEVLAVGK-----RKLRTFGNKGTLPYISLTYY 67 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L + ++ +H+ +G+ +++ P+ A ILG EG GL + + + Sbjct: 68 DTLEEVVEIVHAEEMDIVGIEINENSLPVYPHPFRRSTAFILGNEGTGLSQRQIDICDYL 127 Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281 ++ M G A LNV+ A ++ + HFA Sbjct: 128 VYIPMYGSGTASLNVAIAGSILFH----HFA 154 >gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 171 Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190 S++ ++L+ ++ P N+G++ R++ AF I I S +S L +++ A ++ Sbjct: 21 SEINVLLERLDSPANLGSVFRNSEAFGIVNIWIHEANRSYLKSNRLKRTSRSAEFNLN-- 78 Query: 191 RISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I D + ++ TIG+ +S++ ++ +K KI L+LG E G+ +T Sbjct: 79 -IHFYEDEASILDTFEGTTIGIEITKNSENLSSFKKGLK-SKILLVLGNEKLGINSETLN 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 H+ M G +LNV+ +ALY Sbjct: 137 RLDRSYHIKMFGTNSSLNVAQTLGIALY 164 >gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 275 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 3/154 (1%) Query: 123 SPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + TL+A+ S + + L DP N+G ILR+A A DG+I ++ S ++ Sbjct: 110 TTTLEALETSGKKRFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GAL I +++ T+ + S + +Q + K +++G E G+ Sbjct: 170 MGAL-FSNNIVLASFTEFDNWRRKANIKMAAASVNGTMRHDQAEYSSKSVILMGNEQSGI 228 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + M G +LN++ A A+ Y Sbjct: 229 PEAAENACDILIKIPMAGAADSLNLAQATAIMTY 262 >gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] Length = 160 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 11/151 (7%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGAL 184 +D + + + H P N+G + RSA + T KRYS A + Sbjct: 3 IDQLEPGYFGIGIQHGKTPENLGVLWRSAQNLGASFVFTVGKRYSKQ-----ACDTHDIV 57 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243 + +PY D + G IG+ D++ QE ++ + +LGAE GL + Sbjct: 58 KAMPYFHYDTFEDFYNHLPK-GAMIIGVELDNRAIDLQEFRHPRNCVYLLGAEDHGLTNE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + + P K+LNV+ A ++ +Y Sbjct: 117 AIEKSHHLIKFDTP---KSLNVAVAGSIIMY 144 >gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 263 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA AF I+ K + S + ++ GA + + +++ Sbjct: 118 VVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 177 Query: 196 TD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D ALQ + SS + + A +G EG+G+ E A Sbjct: 178 EDVKALQ------VPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGEALMEMAQRRIS 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + PG ++LNV+ AAA+ L+ Sbjct: 232 IAQPGGEESLNVAAAAAICLH 252 >gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD++ HN+G+I+R+ AFS I + + + + + GA + + + +L Sbjct: 92 IYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAYQWVKCYQNEDL 151 Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D Q + I L +S+ L + I + L++G E G + A + + Sbjct: 152 NDLTQPI-------IALETSEEAINLYEFIFPEHFTLVVGNEEYGCSQEILTKAHYLIEI 204 Query: 255 HMPGIIKALNVSNAAAVA 272 + G +LNV+NA A+ Sbjct: 205 PLRGRKNSLNVANAFAIT 222 >gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855] gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855] Length = 247 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 12/159 (7%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSA 180 T+ A R ++ V++ + + N+ A++RSA A + RY S+ ++A Sbjct: 48 TVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQ-----RTA 102 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238 GA + T + G++ + L +D+ P+ AL+ G E Sbjct: 103 QGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTV-PIRDLDFTQPTALVFGNEDA 161 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G+ E + + + +PG ++ NVS AAAVALY Q Sbjct: 162 GVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQ 200 >gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 261 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 113 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 172 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D L +I+ +K A+I G EG G+ Sbjct: 173 SEIINFLKENN---YSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYK 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 230 TIIPILSNTESLNVAVATGIILY 252 >gi|322488285|emb|CBZ23531.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 545 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ L+ + DP NIG ILR+A F D +I +++ + S +A ++++++G LEH+ Sbjct: 253 VLFLERIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHL 304 >gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium] Length = 207 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 21/180 (11%) Query: 116 LETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTK 166 +E A PTL A R L+ V+++ D NIG I+R+ A + +I++K Sbjct: 1 MEEAKKSKPTLRARANKVKHARCKNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSK 60 Query: 167 RYSPS------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 P E + L ++ A++ + + L + GF ++ S +K Sbjct: 61 ATLPDNWQDMREKSKLNAISASAVKWSFVKKFKDSESCLDHLEKNGFVSVVTSPHTKGRK 120 Query: 221 E------QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K K+A+ G EG G+ E + ++ M GI+++LN+ ++ + LY Sbjct: 121 NVVLHEADYTKYTKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLY 180 >gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] Length = 263 Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA AF I+ K + S + ++ GA + + +++ Sbjct: 118 VVLDRVQDAGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 177 Query: 196 TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 D G Q + SS + + A +G EG+G+ E A+ Sbjct: 178 DDVQ------GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMASHRIS 231 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + PG ++LNV+ AAA+ L+ Sbjct: 232 IAQPGGEESLNVAAAAAICLH 252 >gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 215 Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 9/152 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASGALEH 186 R L +V+D+VN HN+ AI+RS CD + + ++ S + +A+GA + Sbjct: 17 RQPDLTVVMDNVNKAHNLSAIIRS-----CDTVGIGELHAVSYRKSIYTEQDAAAGASKW 71 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 + +K+ Q + SS + + I AL++GAE G+ Sbjct: 72 TTLHLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGAEWDGISEAAL 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G++++LNVS A A+ L+ Q Sbjct: 132 HGADQTIAIPMFGMVESLNVSVATALILFEAQ 163 >gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 125 TLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 ++DA+R+ ++L + ++++ NIG+I+R+ AF+ G+ + + L Sbjct: 55 SVDAIRDDLAKTSTKLHIAIENLEHDLNIGSIVRTGNAFNVSGVHIVGKKKWNRRGALVT 114 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237 + H + +S+L + ++ +Q + + + + P+ + ++ LI G E Sbjct: 115 DRYLNVHH--HAEVSSLVEWAREND---YQLVAVDNMEGSTPIAETALPERAVLIFGQES 169 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 GL + A S ++ G +++NV+ AAA+++++ Sbjct: 170 NGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMHM 207 >gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus] Length = 1579 Score = 42.4 bits (98), Expect = 0.084, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190 S+L++V ++ P N+G + R+ F ++ S+ S S A + +P + Sbjct: 1420 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1478 Query: 191 -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248 R S L + LQ+ + G+ IG+ ++ L Q +K L+LG E +G+ + Sbjct: 1479 VRPSQLMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1538 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 1539 DVCVEIPQQGIIRSLNVHVSGALLIW 1564 >gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial [Meleagris gallopavo] Length = 375 Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C+ ++ TK P E VL ++ GA +P + Sbjct: 154 LVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPIV 210 >gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 242 Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P + + NS L++ LD + DP N+G I+R F I+ +K Y+P V A Sbjct: 88 PVENQIINSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNP--KVVQATM 145 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S A ++ Y+ D + G D + + + I +I+G E G Sbjct: 146 GSIARVNVNYV------DLKAFLSQTKLPVFGTFMDGDTIYQSNLPQNGI-IIMGNEANG 198 Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273 + + ++ T+ + G ++ +LNV+ A A+ L Sbjct: 199 ISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIIL 235 >gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 299 Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+M D P NIG+++RSA AF G++ T + ++ +G+L +P +R+ Sbjct: 120 LVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTGSLFTVPVVRVP 179 Query: 194 ------NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + D+L+ + +G + + +++G E +GL +++ Sbjct: 180 SHRAVLDWADSLRATRI-PIEIVGTDEHGEVEITAHDLTGPTIIVVGNETRGLSTAWRQS 238 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN + AA V LY Sbjct: 239 CDRTVRIPITGAASSLNAAAAATVVLY 265 >gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str. 2457T] gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905] gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82] gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74] gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671] gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 4343-70] gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218] gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227] Length = 206 Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + + D Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ + G Q + SD+ + +++G E G+ + A + M Sbjct: 59 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118 Query: 257 PGIIKALNVSNAAAVALYITQ 277 G++++LNVS A+A+ LY Q Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139 >gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 243 Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 4/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R + ++ +++ N A++R AF + T + P E A G + + Sbjct: 49 SMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCPFEPN--PDIARGTHQWV 106 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 R ++ +A+ + G++ + + + P ++ AL+ G E G+ + Sbjct: 107 DVRRHASTGEAVAALKGAGYRIVATTPHREDATPETFDVGRGPFALVFGTEHAGISDEVI 166 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A + M G++++LNVS +AA+ +Y Sbjct: 167 ASADEFLRIPMCGMVESLNVSASAAILIY 195 >gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + D Sbjct: 152 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 211 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ + ++ K P+ +E+ A++ G E +GL + + Sbjct: 212 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 271 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 272 SVSIPIYGKAESLNLGTSAAVML 294 >gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus caballus] Length = 420 Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266 >gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431] gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327] Length = 206 Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + + D Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ + G Q + SD+ + +++G E G+ + A + M Sbjct: 59 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118 Query: 257 PGIIKALNVSNAAAVALYITQ 277 G++++LNVS A+A+ LY Q Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139 >gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis] Length = 1600 Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 10/177 (5%) Query: 113 GLALETAPL-LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 GL + A L L P AVR + L++V ++ P N+G + R+ F ++ Sbjct: 1422 GLQEQEAELQLVPQQRAVRLGKQHGALVVVASLIDKPTNLGGLCRTCEIFGASVLVLDSL 1481 Query: 168 YSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + S S L +P + + LT+ LQ + G+ +G+ + Q+ + Sbjct: 1482 HHVRDKHFQSLSVSSEL-WLPLMEVKPVQLTEFLQVKKNEGYCIVGVEQTANSRSLQDYQ 1540 Query: 226 -NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 +K LILG E +G+ + + GII++LNV +AA+ ++ T+ H Sbjct: 1541 FPEKTLLILGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHL 1597 >gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 24/162 (14%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSP-----SESA 174 TL+ R S L++V + P N+GA+LRSA A + ++ YSP S Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGV 165 Query: 175 V--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 V L A+ E + +I+ NL H+ + + ++ + P +A+ Sbjct: 166 VFSLRTLAASESEVLDWIKQHNLPLVATTPHA---EALYWEANLRPP---------VAIA 213 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G E +GLR E A + + M G +LNVS +AA+ LY Sbjct: 214 VGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 >gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC 35110] gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC 35110] Length = 179 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 127 DAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 DA R SQ + ++ ++ N+G+I R+ A +I T + + K A GA Sbjct: 16 DAFRESQKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGA 75 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + +++ +AL + G + L + +++ E ++ + L+LG E G+ Sbjct: 76 TETVDWEYVADPLEALADLKDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGID 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNV+ +A +A++ F Sbjct: 136 DEVLQECDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQF 174 >gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens] Length = 190 Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++ +V HN+G + RSA AF II R + A + GA H+ + Sbjct: 4 FLLVHNVAKRHNLGTLARSATAFGVSEIILVGRKDFN-----AFGSHGATLHLQFRHFQT 58 Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L A++ + G+ ++ + + A +LG EG GL K E + Sbjct: 59 LPAAVKYLKDKNVSICGVEITEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVY 118 Query: 254 L--HMPGIIKALNVSNAAAVALY 274 + + PG +LNV+ AA++ L+ Sbjct: 119 IPQNGPG-TASLNVTVAASIVLH 140 >gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYI 190 +L V++ + N AI+RS A I+ + ++P+ +E +P+ Sbjct: 68 VLPVMEDIFQFRNAAAIVRSVEACGFHKIVAMESENEFNPNLRVTKGAETWVEVEKMPH- 126 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETAT 249 NL ++L ++ + G++ + +S + + + + + +AL+ G E +G+ + + A Sbjct: 127 ---NL-ESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEILDFAD 182 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++ NVS AAA+ Y Sbjct: 183 ETVAIPMYGFTRSFNVSVAAAICFY 207 >gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis] gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis] Length = 216 Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G + RSA AF +I R + A + G+ H+ + +L +A + Sbjct: 16 HNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSTSHLRFRHFHSLLNARDYLKE 70 Query: 205 WGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA- 262 G+ +D P+ + A +LG EG GL K E ++ G A Sbjct: 71 KECDICGVEITDGALPVNEHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGRGTAS 130 Query: 263 LNVSNAAAVALY 274 LNV+ AA++ L+ Sbjct: 131 LNVTVAASIVLH 142 >gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays] Length = 163 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203 HN+G + RSA AF ++ R S A + GA H+ + +L AL + + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70 Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259 G G+ +D +P+ A + G EG GL K E ++ G Sbjct: 71 KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130 Query: 260 IKALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 131 TASLNVTVAASIVLH 145 >gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9] Length = 301 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + D Sbjct: 144 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 203 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ + ++ K P+ +E+ A++ G E +GL + + Sbjct: 204 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 263 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 264 SVSIPIYGKAESLNLGTSAAVML 286 >gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis domestica] Length = 517 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P IS Sbjct: 214 LLLICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLRAGMGAHFQVPI--IS 271 Query: 194 NL 195 NL Sbjct: 272 NL 273 >gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO] gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO] Length = 190 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V DP N+G ++R+A AF G++ K + S + +S G+ H+P ++ +L Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170 Query: 196 TDAL 199 D + Sbjct: 171 ADVI 174 >gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71] Length = 206 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + S +A +A+G+ + + D Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ + G Q + SD+ + +++G E G+ + A + M Sbjct: 59 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIILM 118 Query: 257 PGIIKALNVSNAAAVALYITQ 277 G++++LNVS A+A+ LY Q Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139 >gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 263 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 43/84 (51%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ LD V DP N+G I+R+A F + +I + + +A +S++G++ + Sbjct: 116 FVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTP 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSK 217 +L L+++ + GF + D + Sbjct: 176 DLAKTLRRLQADGFTVAASALDGQ 199 >gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 253 Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + N+G+I+R+ AFS + + E + + K+A G E + + L Sbjct: 106 IYLDSIRSAFNVGSIIRTVEAFSLGSLYFSPETPCVEHSQVQKTAMGTSEWVTCFKDIPL 165 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 TD + + + +S + + + +L+LG E G T + A + + Sbjct: 166 TDLPKPIIALETSPCAIS------IYDFVFPEVFSLVLGNEEYGCSEATLKQADFLLQIP 219 Query: 256 MPGIIKALNVSNAAAVA 272 + G +LNV+NA A+A Sbjct: 220 LCGRKNSLNVANAFAIA 236 >gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 263 Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 19/148 (12%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L+ + DP N+G I+R+A A G+I S ++ G++ +P ++ + Sbjct: 121 VALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVFALPVVKCTR- 179 Query: 196 TDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 L W +G ++D ++P +++G E GL P Sbjct: 180 EAFLADRSRWTGSVVGTLLTATHNHRTADYRRP---------TLILMGTEQSGLTPDIAA 230 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LN+S A + +Y Sbjct: 231 ACDTHVKIPMRGRADSLNLSVATGIMIY 258 >gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays] Length = 163 Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203 HN+G + RSA AF ++ R S A + GA H+ + +L AL + + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70 Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259 G G+ +D +P+ A + G EG GL K E ++ G Sbjct: 71 KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130 Query: 260 IKALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 131 TASLNVTVAASIVLH 145 >gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii] Length = 420 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266 >gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Pentastiridius sp.] Length = 239 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R L + L++V+ PHNI A++R+A A GI S+ +A+ H Sbjct: 14 AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245 ++ + + +A+ + G Q + +++ ++I + +ILG E + + Sbjct: 71 VKVKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQAL 130 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A H+ M G++++LNVS A+A+ LY Q Sbjct: 131 TLADHNIHIPMMGMVQSLNVSVASALILYEAQ 162 >gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 243 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%) Query: 31 KKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + S +QK Q NLF+ G+ V+ L + L+ N ++ +LP Sbjct: 9 KLITSLSQKKYR--QKHNLFIAEGIKVVNELLQSDFE--VALIFCTN-----EFKTSLPK 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V+ V ++KI ++ ++ L+L P P ++NS L++ LD +NDP N+G Sbjct: 60 AKIVR-VSETELNKISSLKSPNKVLSLFKIPEDKP----IQNSGLILALDAINDPGNLGT 114 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRISNLTD 197 I+R F +I +K + + +++ G+L I Y+ + N D Sbjct: 115 IIRLCDWFGISQLICSKDTVDCYNQKVVQASMGSLTRISIQYLDLKNYLD 164 >gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa] Length = 422 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266 >gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno] gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno] Length = 220 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF------SCDGIITTKRYSPSESAVLAKSASGA 183 R + + ++ V HN A++R+ F S +G R+ + AK A GA Sbjct: 28 RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEG-----RFGKR---LDAKIAMGA 79 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRP 242 + + R ++ + + + G+Q + + + K A G E +GL Sbjct: 80 QKWVDVFRYNDTQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSA 139 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A + + M G ++LN+S A A+ L Sbjct: 140 QVLSQADTFLKIPMVGFTESLNISVAVAIVL 170 >gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 272 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+++D V DP N+G I+R+A A G++ T + + GAL +P + Sbjct: 117 FLLIVDGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGALFRLPVATVP 176 Query: 194 NLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + + D E IA+++G+E G RP + A Sbjct: 177 SAKGLAASLRERDISLAVADARDGVPYFEAPWDRGSIAIVIGSEAHGPRPFWGDLAQLRV 236 Query: 253 HLHMPGIIKALN 264 + + +++LN Sbjct: 237 RIPLAPPVESLN 248 >gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999] Length = 235 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 10/152 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVL-AKSASGALEH 186 R + L ++++ V+ PHN+ A++R+ AV ++ + YS L A G EH Sbjct: 16 RQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVVWNQNYSLRVGTSLGAHHWVGMHEH 75 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 S++ A+ + G Q + + SD + A+ILG E G Sbjct: 76 ------SDIEKAIAHLKGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATKNAI 129 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G+ +LNVS AAAV LY Q Sbjct: 130 ALADKEIVVPMVGMTVSLNVSVAAAVILYEAQ 161 >gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] Length = 220 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 5/148 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEH 186 + R + + ++ V HN A++R+ F + + R+ + AK A GA + Sbjct: 26 SARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---IDAKIAMGAQKW 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245 + R ++ + + + G+Q + + + + K A G E +GL + Sbjct: 83 VDVFRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSQQVL 142 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LN+S A A+ L Sbjct: 143 SQADTYLKIPMVGFTESLNISVAVAIVL 170 >gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays] gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays] gi|238006410|gb|ACR34240.1| unknown [Zea mays] Length = 220 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203 HN+G + RSA AF ++ R S A + GA H+ + +L AL + + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70 Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259 G G+ +D +P+ A + G EG GL K E ++ G Sbjct: 71 KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130 Query: 260 IKALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 131 TASLNVTVAASIVLH 145 >gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus] Length = 1629 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 NS+L++V ++ N+G + R+ F + S+ S S A + +P + Sbjct: 1460 NSRLIVVASLIDKATNLGGLCRTCEVFGASVLAVGNLQCVSDKQFQHLSVS-AEQWLPLV 1518 Query: 191 RIS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + L D LQ+ + G+ IG+ +K L + +K L+LG E +G+ + Sbjct: 1519 EVRPPQLVDYLQQKKAEGYTIIGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQ 1578 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + G++++LNV + A+ ++ Sbjct: 1579 LDVCVEIPQQGVVRSLNVHVSGALLIW 1605 >gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 75 Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 17 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 60 >gi|167949868|ref|ZP_02536942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 74 Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 35/56 (62%) Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +P+I+++NL+ L+ + G IG + +++ L Q +A+++G+EGKGL P Sbjct: 9 VPFIQVTNLSRTLKWLQQQGVWLIGTAGEAESELYQADLKGPLAIVMGSEGKGLAP 64 >gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii] gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii] Length = 198 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 16/146 (10%) Query: 141 VNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 V+ HNIG I+RSA AF + + +++++ S G+ H+ + L Sbjct: 8 VSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGS-------HGSDAHVAFRHFDTLAKC 60 Query: 199 LQKMHSW-GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 +Q + G + +G+ + P+++ A +LG EG+G+ + ++ Sbjct: 61 VQHLKEVEGCRVLGVEICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQ 120 Query: 257 PGIIKA-LNVSNAAAVALYITQNHFA 281 G A LNV+ AA++ L+ HFA Sbjct: 121 HGAGTASLNVAVAASIVLH----HFA 142 >gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 202 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 14/175 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ ++ + F+ G H V AL + + +L+ + DW N Sbjct: 24 KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P+ I KI+ + QG+ A + ++LD + DP N+ Sbjct: 78 VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 G I+R+A A ++ + ++ + +S G++ +P ++ NL + + K+ Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKL 184 >gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1] gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 269 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG+I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q + ++ + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis ANT/505] gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis ANT/505] Length = 243 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 9/142 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ LD V+DP N+G I+R A + I+T+ + S A K+ S + + +S Sbjct: 102 LILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISATMGSFVRVSVS 158 Query: 194 --NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L D LQ ++ G D + + + + L++G+E G+R + T+ Sbjct: 159 QVDLPDYLQSLN---LPVYGAFLDGQSVHKTQFTGSGV-LLMGSESHGIRETCAKLVTNK 214 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + G ++LNV+ A + L Sbjct: 215 ITIPAFGGAESLNVAMATGIIL 236 >gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens DM4] Length = 269 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D + + + P + SA AL +P+ R + L Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + L++ + L+LG EG GL P++ + M +LN Sbjct: 192 HALTPLALTPGGSETLDRLDPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250 Query: 265 VSNAAAVALY 274 V+ A A+AL+ Sbjct: 251 VATAGAIALH 260 >gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 559 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V+DP +G +LR+A F D IITT + + +SA GA Sbjct: 221 ILVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGA 269 >gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter fragariae] Length = 218 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 13/155 (8%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A+R+ L + L++++ P NI AI+R+A I +S + S L+ +A+G+ H Sbjct: 14 AMRHPDLTVCLENLHKPRNISAIIRTADEVEIPQIHAI--WSKNSSKNLSTAAAGS-NH- 69 Query: 188 PYIRISN---LTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++R+ N + + + + G Q + L++ + LE + +ILG E G+ Sbjct: 70 -WVRVKNHATIENTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPN-CIILGQEQTGI-- 125 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q A + ++ M G++++LNVS A+A+ LY Q Sbjct: 126 SKQALALADHNIPMMGMVQSLNVSVASALILYEAQ 160 >gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70] gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s] gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923] gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2] gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150] gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023] Length = 269 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG+I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q + ++ + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f. nagariensis] gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f. nagariensis] Length = 701 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD V DP N+G++ RSA+AF DG+ + +S+ GAL +P + + Sbjct: 439 LLVLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSSRGALLRLPTV-TGD 497 Query: 195 LTDALQKMHSWGF 207 L + L+ G Sbjct: 498 LVELLEVAEEVGL 510 >gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259] gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259] Length = 249 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 11/147 (7%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +L + LD + DP N+G I+R A F I+ + + + + + ++ GAL I + Sbjct: 98 TDELALALDGLQDPGNVGTIIRLADWFGIHNILCSPTTADAFAPKVVQATMGALGRI-NL 156 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L +AL K+ G D EQ + + K +I+G EG+G+ P + + Sbjct: 157 HYVDLCEALAKLPV-ETPIYGTFLDGPNIYEQSL-DTKGLIIMGNEGQGISPAVERFVSK 214 Query: 251 MAHLHMPGI------IKALNVSNAAAV 271 L +P ++LNV+ A A+ Sbjct: 215 --RLFIPRFPLNATGSESLNVAMATAI 239 >gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus leucogenys] Length = 420 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRVPII 266 >gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis carolinensis] Length = 1589 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-----AVLAKSASGALE 185 NS+L++V ++ P N+G + R+ F +I + + +V A+ LE Sbjct: 1430 NSKLIVVASLLDKPTNLGGLCRTCEIFGVSALIVGSIHYIHDKQFQYLSVSAEQWLSLLE 1489 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKT 244 P+ L D L++ G+ IG+ +K L + +K L+LG E +G+ Sbjct: 1490 VKPF----QLADYLEQKKIEGYTIIGVEQTAKSCDLTEYSFPEKSLLLLGNEHEGIPANL 1545 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G+I++LNV + A+ ++ Sbjct: 1546 IQQLDTCVEIPQQGVIRSLNVHVSGALLIW 1575 >gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] Length = 316 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVN 142 A+L PV P + I G E VH+G AL P D + +++ ++V + + Sbjct: 96 ADLGVDVPVYVAGPDVLAAITGFE-VHRG-ALAAMGRQPPRAAADLLVDARRVLVCEDIV 153 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 N+GAI RSA D ++ + R + + + G + +PY R+ +AL + Sbjct: 154 SHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLL 213 Query: 203 HSWGFQTIGLS 213 GF + L+ Sbjct: 214 RDAGFTLLALT 224 >gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 241 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 18/238 (7%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 Q+ ++ ++ + + G+ TV L N K + + T NA+ + F + + Sbjct: 14 QQKKYRTENKLFVVEGIKTVKE-LVNAKVKPYAIYTTSNAVLE-------DNAFKCELIS 65 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + KI + + LA+ P + L+ +D V DP N+G I+R F Sbjct: 66 ETDLKKISALKTPNNILAV----FYQPKTKEIIEDNWLVAVDDVRDPGNLGTIIRLCDWF 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + +K+ + ++ G+L + I +L L++ + G D K Sbjct: 122 GVANLFCSKQTVDCYNPKTIQATMGSLARVN-IVYGDLEAFLKQTN---LPVYGAFMDGK 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273 +++ L++G E G+ +E T + G ++LNV+ A A+ L Sbjct: 178 NVYKEDFTAQSGVLVMGNEANGVSKTVEELITKKISIPQFGNKTTESLNVATATAILL 235 >gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor] gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor] Length = 1767 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/164 (20%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPS 171 LALE + T+ R +L++V V+ N+ + R+ F G++ + Sbjct: 1594 LALEARLHAAETIKQSRQ-ELIVVASLVDRIPNLAGLTRTCEVFRAAGLVVADKSVLQDK 1652 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230 + +++ +A L + + + ++ L++ G+ IGL + +PL+ + D+ Sbjct: 1653 QFRLISVTAEKWLP-VTEVPVDSVKAYLERKRGEGYSVIGLEQTAHSRPLDGFVFPDRTV 1711 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG E +G+ + + G++++LNV + A+A++ Sbjct: 1712 LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVW 1755 >gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 270 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 139 DHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + + P NIG+I R+A A C+ + I+ P++S L +S G +E + Y R S L + Sbjct: 133 EDIRSPFNIGSIFRTAEAMGCENVFISPNCTDPNQSRAL-RSGMGCIETLGYKRCS-LEE 190 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHM 256 Q + +T G P+ + + +I+G+E G+ P+ + A + M Sbjct: 191 LPQDKPVFVLETGG------TPITEFSFPKEGIVIIGSEELGVSPEALKRADYGRVSIPM 244 Query: 257 PGIIKALNVSNAAAVAL 273 G+ +LNV A + + Sbjct: 245 TGLKASLNVGVAFGILM 261 >gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 274 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 18/190 (9%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIG 148 VP + +K+ ++ GL + TA LD +N + ++V++ V P N+G Sbjct: 83 VPKKIFEKVSYRDR-PDGL-IATAFFFETGLDTFQNKSNIFKNLKPILVIEGVEKPGNLG 140 Query: 149 AILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 ILR+A ++ ++P+ + ++++GAL + + + + + + Sbjct: 141 TILRTAEGAGFHTVLVADPKLDLFNPN----VIRASTGALFTLE-VYLGEIKLIYEILKK 195 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++T+ ++ ++ K KIAL+ G+E GL + + L M G +LN Sbjct: 196 NQYRTLAVTPEATKHYYNADLKGKIALVFGSEQYGLSTYARNNSDEYVSLPMFGESDSLN 255 Query: 265 VSNAAAVALY 274 ++ +A + +Y Sbjct: 256 LAMSAGIVMY 265 >gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] Length = 449 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ D++ DP N+G ILRSA A +C I+ TK + +S +GA +P I Sbjct: 244 LICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGAGAHFRVPII 298 >gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] Length = 355 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%) Query: 96 VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + + K+ G E H G+ + ++ P L LD + L++LD VN+ NIG IL Sbjct: 171 VDSEELTKVSGTEH-HGGICMLVKKSHPFTLQGYLDVPHSEDCLVLLDGVNNAQNIGGIL 229 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 R+ F IIT S + S + + A G E YIR+ D Sbjct: 230 RTCAFFGVKHIITETPESLN-SPITLRVAEGGAE---YIRVLETAD 271 >gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] Length = 248 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 37/170 (21%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 E PLL+ +++ ++LD + DP N+G ILR A + I+ ++ + + + Sbjct: 95 ENRPLLAGP------NEIALILDDIRDPGNLGTILRIADWYGVRKILCSETTADVYNPKV 148 Query: 177 AKSASGALEHIPYIR------ISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQE 223 ++ G+ + + ++ T A+ + +HS GF G Sbjct: 149 ISASKGSFTRVNWWYGDITRVLAQATSAVYGAFLDGEDVHSLGFDASGY----------- 197 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L++G E G+RP+ T + G ++LNV A AV L Sbjct: 198 -------LVMGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATAVLL 240 >gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 258 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A + P+ D V S L + LD V DP N+G I+R A F + I + + + Sbjct: 92 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPK 151 Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GAL + Y + L ++L + +G + S + E + +++ Sbjct: 152 TVQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVM 205 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 G EGKG+ P+ ++ L++P ++LNV+ A AV Sbjct: 206 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 248 >gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1716 Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 103/255 (40%), Gaps = 28/255 (10%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ F ++ +P F Y HT S AL F + T+ A+A L D ++ Sbjct: 1473 MQHF--EASRVLEPLKEFPYIPHTKSTAL-------FCVDYTREAVAVLTADTHIS---- 1519 Query: 93 VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + G E V + + + L P ++++ + +P N+ Sbjct: 1520 ------EGMSSVTGYENVQRKATPWWSSQLYDELHPRALKTERQPVIVIASLLQNPVNVA 1573 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWG 206 + R F+ + ++ + +A + S L +P+ +++ L+ L + G Sbjct: 1574 GLFRCGEVFAVEKVVVSDAAVLEHPHFVAAARSSDL-WLPWSAVQVKALSGYLSSLRQDG 1632 Query: 207 FQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + +G+ + P+ + ++LGAEG G+ + + G+I++LNV Sbjct: 1633 YTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNV 1692 Query: 266 SNAAAVALY-ITQNH 279 ++ +Y T+ H Sbjct: 1693 HVTGSIVMYEYTRQH 1707 >gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1272 Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 4/175 (2%) Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 KIV +AV G L L + L++V V+ N+G + RS+ F Sbjct: 1086 KIVPLKAVEPGRELLGDLPERLRLRKAKEDGLIVVASLVDRAPNLGGLARSSEIFGVRQY 1145 Query: 163 I--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKP 219 + + K E L+ +A L ++ ++ L D L++M + G+ +G + +P Sbjct: 1146 VVGSLKDVESKEFQALSMTAEKWL-NVAELKSFQLVDYLREMKAKGYAIVGAEQTTGSRP 1204 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++Q + L+LG E +GL +A + G++++LNV A+ ++ Sbjct: 1205 IQQIQFPARAVLVLGHEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMW 1259 >gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus] gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus norvegicus] Length = 418 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266 >gi|71662893|ref|XP_818446.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883699|gb|EAN96595.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 559 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V+DP +G +LR+A F D IITT + + +SA GA Sbjct: 221 ILVLDNVDDPGLLGTLLRAAAGFHYDAIITTNHCADIYDHRVVRSARGA 269 >gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CB0101] Length = 261 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 39/279 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ +++ + L+ H K RR Q L L G H + Sbjct: 1 MELITSRRNPLVGRLRALHQPKGRRE-------QGL------------LLLEGTHQLQEL 41 Query: 61 LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKE---AVHQGL 114 L + QLLAT + R L D +LP ++ V + ++ + + V L Sbjct: 42 LRL-GLQPEQLLATPAWIERHGALLADQDLP----LQPVGEEVMEAVATTDHPDGVVATL 96 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A + P+ A + ++ LD + DP N+G +LR+A+A D + P + Sbjct: 97 ARQALPV------ARGDGAFVLALDQLQDPGNLGTLLRTALAAGVDEVWLGGGADPLQPK 150 Query: 175 VLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIAL 231 VL SA AL S L L++ + G Q L +P Q L Sbjct: 151 VLRASAGAALALPLLRLSDRSELLPLLERAVAAGRQLAATLVQPGVQPYWQLDWTRPTVL 210 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +LG EG GL P+ AT + +++LNV+ AAA Sbjct: 211 LLGNEGAGLHPQLAALATHRITIPHSAAVESLNVAVAAA 249 >gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 242 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 7/144 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L + LD + DP N+G I+R F +I + + + ++ G+L + I Sbjct: 97 ELTLALDSIRDPGNLGTIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLTRVNVI-- 154 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 TD + S G D + E +K ++LG E G+ + + Sbjct: 155 --FTDLESYLLSTSNFKYGAFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAKI 212 Query: 253 HLHMPGIIK---ALNVSNAAAVAL 273 + G+IK +LNV+ A A+ L Sbjct: 213 SIPRHGVIKSAESLNVAMAGAIML 236 >gi|322818883|gb|EFZ26166.1| hypothetical protein TCSYLVIO_7669 [Trypanosoma cruzi] Length = 559 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V+DP +G +LR+A F D IITT + + +SA GA Sbjct: 221 VLVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGA 269 >gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] Length = 277 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 15/185 (8%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + ++VG V LA P + + + + VL+ + D N+GA+ RSA A Sbjct: 91 VMSEVVGFNVVRGYLAAARRPHPREAQEVLEGASRVAVLEGLTDVSNVGALFRSAAALGV 150 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSK 217 D ++ + + +++ G + +P+ + + GF ++ L+ D Sbjct: 151 DALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFDALRADGFTSVALALD-- 208 Query: 218 KPLEQEIKND--------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 E ++ D ++AL G+EG GL A + M + +LNV+ ++ Sbjct: 209 ---ECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSAIIPMSRGVDSLNVAASS 265 Query: 270 AVALY 274 AVA + Sbjct: 266 AVAFW 270 >gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 227 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 18/143 (12%) Query: 146 NIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG+I+RSA AF II +R++ GA+ Y + + D ++ Sbjct: 96 NIGSIVRSANAFLAAEVHIIGKRRWN----------RRGAMVTDRYQHVRHHED-VETFT 144 Query: 204 SW----GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +W G I + + + P+ + + L+ G EG GL P+ A+++ + G Sbjct: 145 AWARGSGLPVIAIDNVEGSVPVNRAELPEACVLLFGQEGPGLSPEALAAASAVVEITQYG 204 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++N ++AAAV +Y +A Sbjct: 205 STRSINAASAAAVVMYEWCRRWA 227 >gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 272 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D +I P + SA AL +P+ R+ + L H Sbjct: 133 NVGGLFRNAAAFGADAVILDAATCDPLYRKAIRVSAGTALT-MPFGRVPDGEALLALCHR 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + L+ ++ + + L+LG EG GL P+ + + M + +LN Sbjct: 192 HGLVPVALTPAGEEDIAALPPLPRALLLLGTEGTGL-PEALMARSRRVRIAMAPGVDSLN 250 Query: 265 VSNAAAVALY 274 V+ A AVAL+ Sbjct: 251 VAAAGAVALH 260 >gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 215 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+G I+R F ++ + + + +S G++ + + Sbjct: 72 LTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDCFNPKVIQSTMGSITRVNVVY-K 130 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---S 250 NL++ LQ S + G D + ++ ++ K L+LG E G+ P+ + + S Sbjct: 131 NLSEFLQ---SQDIVSYGTFMDGENVYQKRLQQ-KSVLVLGNEANGINPEIENLISEKIS 186 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + ++LNV+ A A+ L Sbjct: 187 IPQFGKSQETESLNVATATAIFL 209 >gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 298 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L VL V DP N G ++R+A A D ++ T + + +S +G+L H+P + Sbjct: 141 EARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVV 200 Query: 191 RISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 A+ + G Q G +D L + A + G E +GL Sbjct: 201 TAVPAEAAVAAARAAGLQVWAADGYGADRLDALAPGVVAAPTAWLFGNEAQGLDDGELAL 260 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G ++LNV AA V LY Sbjct: 261 ADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 272 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 8/163 (4%) Query: 119 APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 APL L PT ++ + L+ V DP N+G I+R+A A C G+I S Sbjct: 115 APLDSLDPT-----SAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEA 169 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++ G++ + R ++ L +W +G D+ + +++G E Sbjct: 170 VRATMGSVFAVSITR-TDPEAFLAWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMGNE 228 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL + + M G +LN++ A + +Y + Sbjct: 229 QAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVYAATDE 271 >gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1] gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1] gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 290 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 19/165 (11%) Query: 126 LDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 LDA N + ++ V DP N G ++RSA A C ++ + + +S Sbjct: 116 LDAAGNVESFGDNAMVAAFWQVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRS 175 Query: 180 ASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---- 229 +G+L H+P + + T+A + + + G S +PL + Sbjct: 176 TAGSLFHLPVLTMG--TEAFFAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGA 233 Query: 230 -ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +I G E +GL + + + + + G ++LN+ +AAV L Sbjct: 234 KTMIFGNEARGLTREVLDRTDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus] Length = 407 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190 ++++ D++ DP N+G ILRSA C+ ++ TK P E VL ++ GA +P + Sbjct: 185 IVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPIV 241 >gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1] Length = 228 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 34/154 (22%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAK--------SASGALE 185 + ++++ HNIG ++R+A AF G I+ +R++ + V + A+G + Sbjct: 81 VAIENLGHDHNIGTVVRTANAFGAGGVHIVGRRRWNRRGAMVTDRYLSLHHHPGAAGLVA 140 Query: 186 H-----IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 H + + + NL A++ LE+ L+ GAEG GL Sbjct: 141 HARAAGLALVAVDNLPGAVR-------------------LEETALPRDCVLVFGAEGPGL 181 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ +E A + G +++N AA + ++ Sbjct: 182 SPELREAADLAVSIAQFGSTRSINAGVAAGIVMH 215 >gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 258 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S ++VLD+ + N+GA++R A F G++TT P + SGA H Sbjct: 111 SAPVVVLDNPRNLGNVGAVVRLAAGFGVAGVVTTGDIDPWHPNAV---RSGAGLHFATAV 167 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +D L + G + + + D L G+E G+ P+ ++ AT + Sbjct: 168 ERLTSDDLPPGPLYALDAEG------EDIRSVVIPDDALLAFGSERHGISPEVRKRATRL 221 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M + + N++ + A+AL+ Sbjct: 222 VALPMRPQVSSYNLATSVAMALF 244 >gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] Length = 220 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203 HN+G + RSA AF ++ R S A + GA H+ + ++L A + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLALARAYLKE 72 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261 G G+ ++ KP+ + A + G EG GL K + ++ G Sbjct: 73 ERGCDICGVEITEDAKPVTAHPFHRSTAFLFGNEGTGLSQKECDICDFFVYIPQYGGGTA 132 Query: 262 ALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 133 SLNVTVAASIVLH 145 >gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 266 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 3/188 (1%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAIL 151 V P + KI GK+ Q L L+P R+S + +V + DP N+G IL Sbjct: 76 VIVTTPDILSKISGKDNA-QALVGVYRDRLTPLAALDRSSADIWIVAQSLRDPGNLGTIL 134 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ A G+I S +++ GAL I + + L + Q IG Sbjct: 135 RTGDAVGAGGLILIDDCVDPFSVESVRASMGAL-FTQSITQARWEEFLPWLRGGAGQLIG 193 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + + ++ L++G E +GL + + + M G +LN + A AV Sbjct: 194 TSLKATQDYQEPAYQSPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSLNAAVATAV 253 Query: 272 ALYITQNH 279 Y N Sbjct: 254 MAYELLNQ 261 >gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 261 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + +++ G++ ++ Y+ Sbjct: 113 LVILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYLEK 172 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D +IK +K A+I G EG G+ Sbjct: 173 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNGISDDFINITDYK 229 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 230 TIIPILSNTESLNVAVATGIILY 252 >gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 391 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 23/142 (16%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-------I 187 ++ LDHV DP N+GAI+RSA I+ + S +A + +S++G +E+ + Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFMEYMSVYRAVV 235 Query: 188 PYIRISNLTDALQKMHSWG----------FQTIGLSSDSKKPLEQEI-----KNDKIALI 232 P + T A QK G G+++ S + L K + L+ Sbjct: 236 PTLTFLENTVAQQKARDGGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVNKPRRRLLL 295 Query: 233 LGAEGKGLRPKTQETATSMAHL 254 LG EG GL + T AH+ Sbjct: 296 LGNEGAGLPSEVMGLCTHTAHI 317 >gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus] Length = 413 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G +LRSA C ++ TK + + ++ GA +P I Sbjct: 206 LLLICDNLRDPGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPVI 262 >gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 258 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D +IK +K A+I G EG G+ Sbjct: 170 SEIINFLKENN---YSIISTYLDKAAISYNKIKLKEKNAIIFGNEGNGISDDFINITNYK 226 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 227 TIIPILSNTESLNVAVATGIILY 249 >gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 220 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 5/148 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEH 186 + R + + ++ V HN A++R+ F + + R+ + AK A GA + Sbjct: 26 SARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---LDAKIAMGAQKW 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245 + R ++ + + + G+Q + + + + K A G E +GL + Sbjct: 83 VDVFRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVL 142 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LN+S A A+ L Sbjct: 143 SQADTYLKIPMVGFTESLNISVAVAIVL 170 >gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] Length = 270 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 95 TVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAI 150 V P+ DK+ KE H QG+A P + LD + ++ L V DP N+G+I Sbjct: 79 VVAPKVYDKL--KETQHPQGIA-AVLPYFTTALDLTERIAPQRPIVYLQSVQDPGNLGSI 135 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQT 209 +R+A A ++ ++ + + +SA GA+ IP + TD ++ + ++ +T Sbjct: 136 IRTAAAADAGAVVLSRDSVDVYNDKVLRSAMGAVFKIPLV-----TDVDMETLQAYCLRT 190 Query: 210 ----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ Q L G EG GL + + M ++LN+ Sbjct: 191 HRRLTGAAASGSSSYTQLDYAQARVLAFGNEGNGLALPFLQACAETVTIPMRPETESLNL 250 Query: 266 SNAAAVALY 274 + A + LY Sbjct: 251 AAAVGIVLY 259 >gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 269 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG+I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q ++ + + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTIPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis ZM4] gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ZM4] gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 268 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + +V + DP N+G +LR+ A G+I S ++ GAL Sbjct: 115 RQAPIWLVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGAL-FTQK 173 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + D L + IG S + + ++ +++G E +GL ++ Sbjct: 174 IATARWEDFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G +LNV+ A A+ Y N Sbjct: 234 HLVKIPMMGRADSLNVAVAGAIMAYEVLNQ 263 >gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] Length = 312 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 ++VLD + DP N+G +LR+A F ++ T Y P + ++ +G+ +P Sbjct: 166 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPK----VMRAGAGSHWALPLA 221 Query: 191 RISNLTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 R L ++ +G G +D+ P + AL+LG+E GL Sbjct: 222 RTDAPGPFLDRLRRHGAALYGADLQGTRADAWGP------DRPSALVLGSEAHGL----- 270 Query: 246 ETATSMAHLH----MPG-----IIKALNVSNAAAVALY 274 +A + L +PG ++LNV+ A + LY Sbjct: 271 -SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLY 307 >gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3] gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3] Length = 265 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++++ V P N+GAILR A DG+I + + +S+ G + +P I + Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLP-IWSA 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L Q + + S + E N + L+ G+E GL S Sbjct: 176 TLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKIS 235 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L M G +LN+S A + Y Sbjct: 236 LPMLGQADSLNLSTAVSAVAY 256 >gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax] Length = 454 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L ++ D+V DP N+G ILR A A C ++ TK + + +SA GA +P Sbjct: 231 LSLICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLP 285 >gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 268 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + +V + DP N+G +LR+ A G+I S ++ GAL Sbjct: 115 RQAPIWLVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGAL-FTQK 173 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + D L + IG S + + ++ +++G E +GL ++ Sbjct: 174 IATARWEDFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACD 233 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G +LNV+ A A+ Y N Sbjct: 234 HLVKIPMMGRADSLNVAVAGAIMAYEVLNQ 263 >gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 265 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 1/144 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ + L+ V DP N+G I+R+A A C G+I S ++ G++ + + Sbjct: 117 SASCWIALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVFAVAIV 176 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + L +W +G D+ + +++G E GL Sbjct: 177 RCT-VEAFLAWRTAWPGSVVGTRLDATVSYREAAYAGPTLILMGNEQAGLTDGLAAACDV 235 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN++ A + Y Sbjct: 236 NVKIPMRGRADSLNLAIATGIMAY 259 >gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] Length = 262 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 15/158 (9%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA--FSC--DGIITTKRYSPSESAVLAKS 179 P DA + +VLD + DP N+G ++RSA A C GI + +SP + ++ Sbjct: 103 PAQDAWPVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPK----VLRA 158 Query: 180 ASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 A GA L+ +R++ + + W L + L + A I G E Sbjct: 159 AMGAHFLLKIHTEVRLAQWISSYRD-KVWA---TALHHQNNHNLYNLDLHQSAAWIFGNE 214 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G G+ + + + M G ++LNV+ AA V L+ Sbjct: 215 GSGVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLF 252 >gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] Length = 252 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 23/172 (13%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167 Q LA+ P + + D R S L + LD + DP N+G I+R A F + II ++ Sbjct: 81 QQVLAVFEQPQYTLSPDFARQS-LCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVD 139 Query: 168 -YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225 Y+P K+ + I +++ + T + +HS G + G D + EQ + Sbjct: 140 VYNP-------KTIQATMGGIARVKV-HYTSLPEFIHSLGDAPVFGTFLDGENMYEQPLS 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271 + + +++G EG G+ + + A L++P ++LNV+ A AV Sbjct: 192 TNGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGKETSESLNVAIATAV 240 >gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] Length = 251 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPS 171 A + P+ D V S L + LD V DP N+G I+R A F + I T Y+P Sbjct: 85 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTVDVYNPK 144 Query: 172 ESAVLAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ GAL + Y + L ++L + +G + S + E + Sbjct: 145 T----VQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHG 194 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 +++G EGKG+ P+ ++ L++P ++LNV+ A AV Sbjct: 195 LIVMGNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 241 >gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] Length = 274 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA AF I+ K + S + ++ GA + + +++ Sbjct: 129 VVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 188 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D +Q + + SS + + A +G EG+G+ E A + Sbjct: 189 -DEVQGLQ---VPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMARHRISIA 244 Query: 256 MPGIIKALNVSNAAAVALY 274 PG ++LNV+ AAA+ L+ Sbjct: 245 QPGGEESLNVAAAAAICLH 263 >gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens] Length = 420 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266 >gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens] gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct] Length = 420 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266 >gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens] gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens] gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens] gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens] gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct] Length = 420 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266 >gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis] Length = 186 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 25/158 (15%) Query: 124 PTLDAV---RNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 PT + + +NS +L ++ D + DP N+G+++RS A C I+ + Sbjct: 36 PTYEEISKSKNSHILPLTVICDGLKDPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVL 95 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +SASGA +IP + + SW L D ++ +I L++G+E Sbjct: 96 RSASGAHFYIP----------VYEDISWNRMLDYLPHDF-------FRDTEIVLVVGSER 138 Query: 238 KGLRPKTQETATSMA--HLHMPGIIKALNVSNAAAVAL 273 GL + A LH+P +++A A L Sbjct: 139 TGLSEQALRFGEQHAGKRLHIPMTNDKFCLNSAVAATL 176 >gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans] Length = 1292 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 23/174 (13%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 SP R + +++V +++P N+G + R + +F + + + A S + Sbjct: 1110 SPFTKYRRPASVILVASLIDNPTNLGGLSRISESFGLEALYIDDLKKTAHKDFKATSVTS 1169 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------- 226 +H P ++IS++ L + G+ +G+ + + E ++ Sbjct: 1170 E-KHFPIHALKISDVPQFLIETKRKGYVVVGVEQTDRSGILGEGEDVDAHGGAASTRWGK 1228 Query: 227 ------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ++LG+E G+ P+ + G+ ++LNV A +ALY Sbjct: 1229 SIGTLPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALY 1282 >gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] Length = 236 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185 A R +L + +++V+ NIG+I+RSA AF+ G II +R++ + V + + Sbjct: 82 AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 139 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H P + L + G++ IG+ + +PLE ++ ++ G+EG+G+ + Sbjct: 140 HHP-----EPGELLAWARAEGYEVIGIDNGPGAQPLETADLPERCLMVFGSEGEGISAEL 194 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +++NV+ AAAVA++ Sbjct: 195 SAGCSRLLRIGQYGSTRSINVAAAAAVAMH 224 >gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 178 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/144 (19%), Positives = 72/144 (50%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ +N+G++ R++ AF + I + + K+A GA + + + + Sbjct: 26 IIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATDAVTWEYVE 85 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATS 250 + ++K+ G + ++ L++ + +K A++ G E KG++ + + + Sbjct: 86 DSIALVRKLKEDGVHVCAIEQAEGAVMLDKFVPTTGEKYAVVFGNEVKGVQQEIVSLSNT 145 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S +A V ++ Sbjct: 146 VIEIPQVGTKHSLNISVSAGVVIW 169 >gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8] gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8] Length = 262 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190 ++VLD + DP N+G +LR+A F ++ T Y P + ++ +G+ +P Sbjct: 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPK----VMRAGAGSHWALPLA 171 Query: 191 RISNLTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 R L ++ +G G +D+ P + AL+LG+E GL Sbjct: 172 RTDAPGPFLDRLRRHGAALYGADLQGTRADAWGP------DRPSALVLGSEAHGL----- 220 Query: 246 ETATSMAHLH----MPG-----IIKALNVSNAAAVALY 274 +A + L +PG ++LNV+ A + LY Sbjct: 221 -SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLY 257 >gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 178 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ +NIG++ R+A AF I + + K+A GA E + + + Sbjct: 25 VIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATESVEWEYVQ 84 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250 ++T ++ + + I + + LE K ALI G E +G++ Sbjct: 85 DITTLVESLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFGNEVEGVQQSVVSLCQR 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LN++ +A + L+ Sbjct: 145 AIEIPQYGTKHSLNIAVSAGILLW 168 >gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] Length = 267 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193 +++LD + DP N+G ++R+A A + +I K + + +++ G + IP + ++S Sbjct: 118 ILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRASMGGIFAIPIWQKVS 177 Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N K + F+ + ++K + K+ L++G E GL A Sbjct: 178 KNEFKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNEANGLAEDLLNIADMKV 237 Query: 253 HLHMPGIIKALNVSNAAAV 271 + + G +++LN + AAAV Sbjct: 238 KIPLKGEMESLNAAIAAAV 256 >gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 261 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + N GA++R A F G++TT P V+ A + + Sbjct: 119 VVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + L+ L + + E+ +D + L G+E GL P+ + A + L Sbjct: 171 VVERLEVAGLPPGPLFALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVAL 229 Query: 255 HMPGIIKALNVSNAAAVALY 274 M + + N++ + A+ LY Sbjct: 230 PMRPQVSSYNLATSVAMTLY 249 >gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545] Length = 119 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%) Query: 170 PSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 PS ++A G + IP R+ + TDA T + D+K E+ Sbjct: 10 PSARGQALRAARGGVFRIPIARLGWDELVDFTDARGLARYCADATAANAVDAK---EESE 66 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+LGAEG+GL + + + MPG +++LNV A + +Y+ + Sbjct: 67 DGRGVCLVLGAEGRGLSAEALGGCQPV-KVPMPGEMESLNVGIAGGILMYVMR 118 >gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 266 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 10/152 (6%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +P R S LL VLD + N GA++R A F G++TT AV+ ++ +G Sbjct: 116 APGFAGPRTSPLL-VLDEPRNLGNAGAVIRLAAGFGASGVVTTGDLDLWHPAVV-RAGAG 173 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 P R + L W F G D + + +D + L G+E GL Sbjct: 174 LHFATPVARRA--VPELPAGPLWAFDAEG--EDLRG---VRVPDDAL-LAFGSERHGLTA 225 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +E A + L M + + N++ + +ALY Sbjct: 226 AVRERADRLVALPMRPHVSSYNLATSVGMALY 257 >gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276] gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s] Length = 269 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++ P NIGA+LR A DG I Y+P+ + +S+ G + +P + Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGAILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S L + L +H +Q + ++ + + ++ G+E GL P + Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 L M G +LN+S++ A Y Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257 >gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] Length = 243 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 12/157 (7%) Query: 125 TLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 T+DA+R + +++++ NIG+I+R+A A + R + + Sbjct: 80 TMDAIRADIAARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGRKRWNRRGAMVT 139 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237 ++H P +R L + K G +G+ + + LE + ++ L+ G+E Sbjct: 140 DRYLPVDHRPEVR--ELVEHCSKE---GLTLVGVDNVEGSVALEGAVLPERACLVFGSEA 194 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + S+ + G +++NV +AAA+ ++ Sbjct: 195 SGLSEEMIRACDSVVAITQRGSTRSMNVGHAAAIVMW 231 >gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32] gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32] Length = 244 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 16/207 (7%) Query: 72 LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L KN A D+ N F V D V A+ + PT + + Sbjct: 41 LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPK 98 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 + L++ LD V+DP N+G I+R A + I+ + Y+P K+ S + Sbjct: 99 ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +S TD + + G + + + E + I L++G+E G+R + Sbjct: 152 FGRVHVSQ-TDLPEYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 T + G ++LNV+ A + L Sbjct: 210 FVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24] gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24] gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24] Length = 261 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + N GA++R A F G++TT P V+ A + + Sbjct: 119 VVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + L+ L + + E+ +D + L G+E GL P+ + A + L Sbjct: 171 VVERLEVAGLPPGPLFALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVAL 229 Query: 255 HMPGIIKALNVSNAAAVALY 274 M + + N++ + A+ LY Sbjct: 230 PMRPQVSSYNLATSVAMTLY 249 >gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 226 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A + P+ D V S L + LD V DP N+G I+R A F + I + + + Sbjct: 60 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPK 119 Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GAL + Y + L ++L + +G + S + E + +++ Sbjct: 120 TVQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVM 173 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 G EGKG+ P+ ++ L++P ++LNV+ A AV Sbjct: 174 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 216 >gi|328875258|gb|EGG23623.1| TAR RNA loop binding protein [Dictyostelium fasciculatum] Length = 1627 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D +++V V+ N+ I R+ F+ + ++ + R E + + + A Sbjct: 1474 MDQRSRQSIIIVATFVDKIPNLAGIARTGEIFNIESLVVSNRRIMKE-VMFQQISVSAER 1532 Query: 186 HIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRP 242 +P +S NLTD L S G+ +G+ S E + +K L+LG E +G+ Sbjct: 1533 WLPIEEVSEENLTDYLMSKKSEGYSLLGIEQTSTSNCITEFQFPNKCVLLLGKEKEGIPT 1592 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + G++++LNV + ++ + Sbjct: 1593 EYINLLDKCIEIPQLGVLRSLNVHVSGSIMI 1623 >gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] Length = 238 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + + V HN A++RS F + + + + + + A GA + + Sbjct: 42 RTNHFTVATEDVYQLHNTSAVIRSCDVFGVQNVHIIEEQNAKK--IDREIAMGAQKWVTI 99 Query: 190 IRISNLTDALQKMHSWGFQTIGLS----------SDSKKPLEQEIKNDKIALILGAEGKG 239 R ++ D+++ + G+Q + S D KP A+ G E G Sbjct: 100 NRYHSVQDSIKSLKEKGYQIVATSPHIESHNLRDFDVTKPS---------AIFFGTEKDG 150 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + A S + M G ++LN+S +AA+ L Sbjct: 151 LSEEVLNQADSYIKIPMVGFTESLNISVSAAIIL 184 >gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 251 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 19/165 (11%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A + P+ D V S L + LD V DP N+G I+R A F + I + + + Sbjct: 85 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144 Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GAL + Y + L ++L + +G G + E + +++ Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYTESLSAHGLIVM 198 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 G EGKG+ P+ ++ L++P ++LNV+ A AV Sbjct: 199 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 241 >gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 252 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 17/170 (10%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q +AL P A+++S L + LD V DP N+G I+R A F + I ++ Sbjct: 82 QQVIALFEQPQYEIDNKAMQHS-LCLALDGVQDPGNLGTIIRLADWFGIEHIYCSQDTVD 140 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKNDK 228 + ++ G L + I ++LT+ +++ + L ++ K LEQ K Sbjct: 141 IYNTKTIQATMGGLARVK-IHYTSLTEIIKQNPNIPIYGTFLDGENIYDKQLEQ-----K 194 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI------IKALNVSNAAAVA 272 +I+G EGKG+ + QE + L++P ++LNV+ A A+ Sbjct: 195 GLIIMGNEGKGISDELQELVSH--KLYIPNYPMNKESAESLNVAIATAIV 242 >gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 220 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + V HN A++RS F + + + + + A GA + + Sbjct: 29 RTKHFTVATEDVYQLHNTSAVIRSCDVFGIQEVNIVEEVNAKR--IDREIAMGAQKWVDL 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248 R + DA+Q + G+Q + + + ++ K G E +GL + + A Sbjct: 87 NRYHTVKDAIQDVKQKGYQVVATTPHANDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ L Sbjct: 147 DVFLKIPMVGFTESLNISVSAAIIL 171 >gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana] gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana] Length = 278 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ ++ HN+G + RSA AF +I R + A + G+ HI + +L Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62 Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +A L++ + ++ + E K + A +LG EG GL K E Sbjct: 63 IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRN-TAFLLGNEGSGLSAKEYEICDFFV 121 Query: 253 HLHMPGIIKA-LNVSNAAAVALYITQNHFA 281 ++ G A LNV+ AA++ L+ HF Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH----HFG 147 >gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L++LD V DP N G ILR+A+A + T+ + + +S GA+ + + Sbjct: 122 MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIVTHC 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L+ S + E +AL++G EG G Q Sbjct: 182 QPEEILKVCRSHKIPVFVGDVEGTDLYETHFAQ-PMALVVGNEGNGPSAAFQGPGVKRIT 240 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A + LY Sbjct: 241 IPMSHQVESLNVAMATGIILY 261 >gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107] gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107] Length = 240 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 26/158 (16%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGAL 184 A+ + + + L + DP N+G ILR+ F C +++ P V+ +S+ GA+ Sbjct: 94 ALVDGERAIYLHEIQDPGNLGTILRTLAWFGGFRC--LLSPGSVDPYNPKVV-RSSMGAI 150 Query: 185 EHIPY---IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEG 237 H+P + +++L + ++ + ++ND A + G E Sbjct: 151 FHVPLELDVSLAHLAERFARIACLDMDGVA------------VRNDAFAGHRCYVFGNEA 198 Query: 238 KGL-RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ R + Q M ++ G I++LN++ A + +Y Sbjct: 199 RGVPREQLQNFDLHMFNIPGSGAIESLNLATAVNICVY 236 >gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304] gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 226 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 12/144 (8%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I R A + + K ES A +A LE+ + + +L + LQ+M+ Sbjct: 8 PENVGFIARVAKNYGIKRLCLYKCRVTEESYHTAANAKDVLENA--VVVEDLQEFLQRMN 65 Query: 204 SWGFQTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T G+ K L +E + ++A++ G E GL + E + + Sbjct: 66 LI-VGTTGIPGGDYKYLRKELLAPEDLPSVAKGRVAVLFGREDYGLYNEELEMCHVLVRV 124 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 +NVS+AAAV LY + Sbjct: 125 PTSEEYPVMNVSHAAAVILYFLRE 148 >gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] Length = 244 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 16/207 (7%) Query: 72 LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L KN A D+ N F V D V A+ + PT + + Sbjct: 41 LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPK 98 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 + L++ LD V+DP N+G I+R A + I+ + Y+P K+ S + Sbjct: 99 ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +S TD + + G + + + E + I L++G+E G+R + Sbjct: 152 FGRVHVSQ-TDLPEYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 T + G ++LNV+ A + L Sbjct: 210 FVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha proteobacterium EB080_L58F04] Length = 154 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 6/148 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189 N ++ +VL PHN GAI R+ VA + + I I +S SE V+ ++ + +H+ Sbjct: 2 NEKMKIVLVAPEIPHNTGAIGRTCVALNLELILIKPYGFSLSEKTVI-RAGTRYWKHVRL 60 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L+ ++ + D L+ G E GL P Sbjct: 61 CEYEDWQSFLEDRQPAQDDLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGL-PSEVMLGR 119 Query: 250 SMAHLHMP---GIIKALNVSNAAAVALY 274 H+P ++K+LN+SN A +Y Sbjct: 120 EDRIFHVPMRNPVVKSLNLSNVATAVIY 147 >gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099] gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099] Length = 274 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 10/149 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N + + LD V DP N+G ++R+ A G+I + S ++ G++ +P Sbjct: 115 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVA 174 Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245 + + + +W GF + + K ++ + + L++G E +GL Sbjct: 175 KATT-----EAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 229 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN++ A + L+ Sbjct: 230 ASCDRLLRIPQAGRADSLNLAVATGIMLF 258 >gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 155-74] Length = 206 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + + +A +A+G+ + + D Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASAAAGSNSWVQVKTHRTIGD 58 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ + G Q + SD+ + +++G E G+ + A + M Sbjct: 59 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118 Query: 257 PGIIKALNVSNAAAVALYITQ 277 G++++LNVS A+A+ LY Q Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139 >gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 229 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R L + +++ + NIG ++R+A AF+ D + I +R A++ + H Sbjct: 76 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHH-- 133 Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + L+ G + + ++ PLE ++ L+ G EG G+ + Q+ Sbjct: 134 ----ATVAELLEWASDKGLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDA 189 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G +++N AA +A++ Sbjct: 190 AMMTCSIAQFGSTRSINAGVAAGIAMH 216 >gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946] gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946] Length = 274 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 24/162 (14%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSP-----SESA 174 TL+ R S L++V + P N+GA+LRSA A + ++ YSP S Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEVVLVAGGVDLYSPQVIRNSTGV 165 Query: 175 V--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 V L A+ E + +I+ NL H+ + + ++ + P +A+ Sbjct: 166 VFSLRTLAASESEVLDWIKQHNLPLVATTPHA---EALYWEANLRPP---------VAIA 213 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G E +GLR E A + + M G +LNVS +AA+ LY Sbjct: 214 VGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 >gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275] gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275] Length = 264 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHI 187 + + ++VLD + DP N+G I+R+A A D IIT K + + +S G ++ I Sbjct: 115 DDKYIIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNPKVIRSTMGSIFSMNII 174 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R + L + S G + + +++ + +K+AL++G E G+ E Sbjct: 175 PAER----DEMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIGNEANGIDDVIAEN 230 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + G ++LN + ++A+ +Y Sbjct: 231 SDLLVKIPIYGSAESLNAAISSAILMY 257 >gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] Length = 220 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R +V++++ NIG I+R+A AF + + I +R A++ H Sbjct: 66 RRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 125 Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ G I + ++ +P+E + AL+ G EG GL P+ + T Sbjct: 126 AQAFADYAAGR------GLAVIAVDNTPGAEPMETFALPRRCALLFGQEGTGLSPELRGT 179 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A S + G +++NV AA +A++ Sbjct: 180 AQSALAIAQFGSTRSINVGVAAGIAMH 206 >gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] Length = 269 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D + + + P + SA AL +P+ R + L Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + L+ + L+LG EG GL P++ + M +LN Sbjct: 192 HALTPLALTPGGSETLDALEPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250 Query: 265 VSNAAAVALYITQNHFAK 282 V+ A A+AL+ H A+ Sbjct: 251 VATAGAIALH----HLAR 264 >gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] Length = 218 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185 A R +L + +++V+ NIG+I+RSA AF+ G II +R++ + V + + Sbjct: 64 AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 121 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H P + L + G++ IG+ + +PLE ++ ++ G+EG+G+ + Sbjct: 122 HHP-----EPGELLAWARAEGYEVIGIDNGPGAQPLEAADLPERCLMVFGSEGEGISLEL 176 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +++NV+ AAAVA++ Sbjct: 177 SAGCSRLLRIGQYGSTRSINVAAAAAVAMH 206 >gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana] gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana] gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 222 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ ++ HN+G + RSA AF +I R + A + G+ HI + +L Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62 Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +A L++ + ++ + E K + A +LG EG GL K E Sbjct: 63 IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRN-TAFLLGNEGSGLSAKEYEICDFFV 121 Query: 253 HLHMPGIIKA-LNVSNAAAVALY 274 ++ G A LNV+ AA++ L+ Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH 144 >gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium 3519-10] gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium 3519-10] Length = 242 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD + DP N+G I+R A F II ++ + + +++ G+ ++R++ Sbjct: 100 LILDGIQDPGNLGTIIRLADWFGIGQIICSEDTVDIYNPKVIQASMGS-----FLRVNVF 154 Query: 196 -TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D + + TIG + + + ++ L+ G EG G+RP+ T + Sbjct: 155 YADIKEYLTDSPIATIGTDMEGENLYNFKFP-ERFNLVFGNEGNGIRPEIDNLLTDKITI 213 Query: 255 HMPGIIK---ALNVSNAAAVAL 273 G K +LNVS A + L Sbjct: 214 PRFGKSKSTESLNVSMATGIIL 235 >gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] Length = 308 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 19/157 (12%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRS-------AVAFSCDGIITTKRYSPSESAVLAKSAS 181 VR S L+ V NDP N G ++R+ AV F+ DG+ P + +S++ Sbjct: 138 VRPS-LVAVCVAANDPGNAGTVIRTADAAGADAVVFAGDGV------DPFGGKCV-RSSA 189 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEG 237 G+L H+P + +L A+ + + G + + S + L + ++ + G E Sbjct: 190 GSLFHLPVVMEPDLGVAVDWLRANGCRVVATSGHGARDLYEAADAGELDGPTGWLFGNEA 249 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL P A ++ + + G ++LN++ A A+ LY Sbjct: 250 HGLSPDALAAADAVLRVPVYGQAESLNLAVATALCLY 286 >gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] Length = 269 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D + + + P + SA AL +P+ R + L Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + L+ + L+LG EG GL P++ + M +LN Sbjct: 192 HALTPLALTPGGSETLDALEPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250 Query: 265 VSNAAAVALY 274 V+ A A+AL+ Sbjct: 251 VATAGAIALH 260 >gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 103 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEG 237 + G LE + IR +L+++ + +G + S KP+ + + IAL+LG E Sbjct: 1 SEGGLEWVEVIRAQKFVASLKRLRD-SHRIVGTALGSGKPVAEVLNRPGKPIALLLGNEE 59 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL P T + L G +++LNV+ AA+ ++ Sbjct: 60 DGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIH 96 >gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640] gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06] Length = 261 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA ++L Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L + F T L + + L E + A + G EG G+ + A + Sbjct: 175 EIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 234 MHDATESLNVAMAATICLF 252 >gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 273 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 11/145 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL + LD V DP N+G I+R A F + + ++ + + + + ++ G++ + I Sbjct: 124 QLCLALDGVQDPGNLGTIIRIADWFGIEHVYCSEDTADAYNPKVVQATMGSIARVKVHSI 183 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL + + G G D + QE+ + + +++G EGKG+ + ++ T Sbjct: 184 -NLPQFITHLPE-GVPIYGTLLDGQNIYTQELSANGL-IVMGNEGKGISEEIRKLVTH-- 238 Query: 253 HLHMPGI------IKALNVSNAAAV 271 L +P ++LNV+ A AV Sbjct: 239 KLFIPSFPPDTDTAESLNVAIATAV 263 >gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] Length = 218 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 7/147 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ V HN A+LRS F + + R +A A ++ Sbjct: 28 RTRHFTVAVEDVYQMHNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAMGAQKWVDIHR 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 Y D L+K G++ I + DS+ + +I K A G E +GL + Sbjct: 88 YNDTQQCIDTLKKQ---GYRIIATTPHEDSQYLHDFDI-TQKAAFFFGKEKEGLSEEVLS 143 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 A + M G ++LN+S +AA+ + Sbjct: 144 QADEFLKIPMVGFTESLNISVSAAITI 170 >gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 285 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 10/149 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N + + LD V DP N+G ++R+ A G+I + S ++ G++ +P Sbjct: 126 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVA 185 Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245 + + + +W GF + + K ++ + + L++G E +GL Sbjct: 186 KATT-----EAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 240 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN++ A + L+ Sbjct: 241 ASCDRLLRIPQAGRADSLNLAVATGIMLF 269 >gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] Length = 271 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--R 191 L+++ + P N+GAILR+A A D +I + + + +S+ G + +P Sbjct: 123 LILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVGCVFTVPTATGT 182 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 S + D L+ + + SS+ ++ A+ LG E GL + ++ A Sbjct: 183 TSEVVDFLKSKNINLYAATLQSSERYDTMDY---TSGSAIALGTEATGLTQEMRDAAMQN 239 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + M G I ++N+S +AA+ ++ Sbjct: 240 IIIPMSGTIDSMNLSVSAAILIF 262 >gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L +++ N+GA R+A AF D ++ + +SGA +P+ + Sbjct: 124 LILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQGGTG 183 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGL 240 D + + G + L+ S PL +++AL++GAEG GL Sbjct: 184 ADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGL 229 >gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 242 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P + NS L++ LD + DP N+G I+R F I+ +++ Y+P V A Sbjct: 88 PQEKQIENSGLIVALDDIRDPGNLGTIIRLCDWFGIAQIVCSEQTVDVYNP--KVVQATM 145 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S +I Y+ +L L + + F G D K + ++ I ++LG E G Sbjct: 146 GSITRVNITYL---DLETYLAEAKTAVF---GTFMDGKDIYKTQLPPSGI-IVLGNEANG 198 Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273 + +E T + G ++ +LNV+ A A+ L Sbjct: 199 ISKIIEEKVTQKITIPRFGDLQRTESLNVATATAIVL 235 >gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] Length = 220 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 17/156 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182 R L ++ + V+ PHN+ AI+R+ CD + I T P+ S V S Sbjct: 18 RQPDLTILTEDVHKPHNLSAIIRT-----CDAVGILDVHCINTTDEFPTFSQVSQGSDKW 72 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLR 241 H N+ + + F + +EI + A++LGAE G+ Sbjct: 73 VFLH----SHPNIKTGINHLKRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGAEKWGVS 128 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M G++++LNVS AAAV L+ Q Sbjct: 129 EEAANLVDGHIIVPMLGMVQSLNVSVAAAVILFEAQ 164 >gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435] Length = 1457 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + S L+++ V+ P N+G I R + G++T E A A + +P Sbjct: 1303 KRSDLIVMASLVDKPPNLGGICRLSDVLGA-GLLTLDDMRVKEHIQFKNVAVTADKWMPL 1361 Query: 190 --IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQ 245 ++ N+ + + G+ IGL +D L E+K K +LI LG E +G+ Sbjct: 1362 EEVKKENIIGFMLRKKKQGYTLIGLEQTDDSVELNSELKFPKKSLIVLGMEKEGIPSSIL 1421 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G+I+++N+ A AV ++ Sbjct: 1422 AELDFCVEIKQVGVIRSMNIQTATAVIVH 1450 >gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421] gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421] Length = 268 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 8/138 (5%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++++ P N+G+I R+A AF + I ++ + +SA G +E +P+ +L + Sbjct: 125 VENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQPRAIRSAMGTIELVPW-EHCDLEN 183 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHM 256 + + + +T G S + E+ I +++G+E GL P+ AT+ + M Sbjct: 184 LPKDLPVFALETGGTPIHSFRFPEKGI------VMIGSEELGLSPQALRRATAGTVSIPM 237 Query: 257 PGIIKALNVSNAAAVALY 274 G ++NV A + ++ Sbjct: 238 YGSKASINVGVAFGILMH 255 >gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 251 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 16/152 (10%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V S L + LD V DP N+G I+R A F + I + + + ++ GAL + Sbjct: 98 VIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVK 157 Query: 189 --YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 Y + L ++L + +G + S + E + +++G EGKG+ P+ ++ Sbjct: 158 VHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEK 211 Query: 247 TATSMAHLHMPG------IIKALNVSNAAAVA 272 L++P ++LNV+ A AV Sbjct: 212 LINK--KLYIPNYPQERETSESLNVAIATAVV 241 >gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 291 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 10/151 (6%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V +++ LD V DP N+G +LR+A A G++ S ++ G++ +P Sbjct: 137 VSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRATMGSIFAVP 196 Query: 189 YIRISNLTDALQKMHSW--GFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPK 243 + S + W GF + + + + E L++G E GL P Sbjct: 197 LAKASE-----AEFLEWRKGFSGLVAGTHMEGAVDYREPRYGAQPTILLMGNEQAGLTPS 251 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN++ A V L+ Sbjct: 252 LARICDVLVRIPQSGRADSLNLAVATGVMLF 282 >gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 222 Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ ++ HN+G + RSA AF +I R + A + G+ HI + +L Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62 Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +A L++ + ++ + E K + A +LG EG GL K E Sbjct: 63 IEARTYLKEEKDCDICGVEIADGASAVNEHPFKRNT-AFLLGNEGSGLSAKEYEICDFFV 121 Query: 253 HLHMPGIIKA-LNVSNAAAVALY 274 ++ G A LNV+ AA++ L+ Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH 144 >gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 237 Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust. Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 17/159 (10%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSA 180 ++ +D R+S + + + ND NIG ++R+A AF+ D + I +R A++ Sbjct: 77 ITEDIDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRY 135 Query: 181 SGALEHIPYIRISNLTDALQKMHSW----GFQTIGL-SSDSKKPLEQEIKNDKIALILGA 235 + H ++++K+ +W G + + ++ PLE ++ L+ G Sbjct: 136 QHLMHH----------ESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQ 185 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG G+ Q+ A + G +++N AA +A++ Sbjct: 186 EGPGVTQAAQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 224 >gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 391 Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 29/145 (20%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-------I 187 ++ LDHV DP N+GAI+RSA I+ + S +A + +S++G +E+ + Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFMEYMSVYRAVV 235 Query: 188 PYIRISNLTDALQK---------------MHSWGFQTIG---LSSDSKKPLEQEIKNDKI 229 P + T A QK M G T L S S P+ K + Sbjct: 236 PTLTFLENTVAQQKARDDGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVN---KPRRR 292 Query: 230 ALILGAEGKGLRPKTQETATSMAHL 254 L+LG EG GL + T AH+ Sbjct: 293 LLLLGNEGAGLPSEVMGLCTHTAHI 317 >gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 217 Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 6/155 (3%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L+ +D R + + + V HN A++RS F I + P + + A Sbjct: 21 LIKKVIDQ-RTNHITVATQDVYQLHNTSAVIRSCDVFGIQNIHVIEEKFPKR--IDREIA 77 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGK 238 GA + + R ++ + + + G+Q + S DS + +I K AL G E Sbjct: 78 MGAQKWVSVNRHASAKECISHVREMGYQIVATSPHDDSLHLGDFDITK-KSALFFGTERY 136 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 GL + + A + M G ++LN+S +AA+ L Sbjct: 137 GLSQEIIDEADCTLKIPMYGFTESLNISVSAAIIL 171 >gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 251 Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A + P+ D V S L + LD V DP N+G I+R A F + I + + + Sbjct: 85 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144 Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GAL + Y + L ++L + +G G + E + +++ Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYAESLSAHGLIVM 198 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 G EGKG+ P+ + L++P ++LNV+ A AV Sbjct: 199 GNEGKGVSPEVERLINK--KLYIPNYPQERETSESLNVAIATAVV 241 >gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 256 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 108 LIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 167 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D +IK +K A+I G EG G+ Sbjct: 168 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNAVIFGNEGNGISDDFINITDYK 224 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 225 TIIPILSNTESLNVAVATGIILY 247 >gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 251 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%) Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A + P+ D V S L + LD V DP N+G I+R A F + I + + + Sbjct: 85 AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144 Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GAL + Y + L ++L + +G G + E + +++ Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYAESLSAHGLIVM 198 Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 G EGKG+ P+ + L++P ++LNV+ A AV Sbjct: 199 GNEGKGVSPEVERLINK--KLYIPNYPQERETSESLNVAIATAVV 241 >gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 286 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++ D P NIG+I+RSA AF G+I + + ++ +G+L +P +R+ Sbjct: 128 LGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVP 187 Query: 194 NLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246 + + + ++ + G + +++D K + ++ + + L++G E GL +E Sbjct: 188 SPAEVMAWVERRRAAGLPLVLVATDEKG--DADVYDFDFTQPVLLLVGNETSGLAGAWRE 245 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN +NAA LY Sbjct: 246 VCDVTVSIPMAGAASSLNAANAATAVLY 273 >gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 320 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 74/272 (27%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPVKTVPPQT 100 ++YGV++VS+ L R I +L T+ + +D P++T + Sbjct: 79 YVYGVNSVSSVLVKNERTIHSVLVNEHIRLNKKTRKQAYQYIFDTIKKRNIPIRTTSKKK 138 Query: 101 IDKIVGKEAVHQGLALETA--------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D +VG H + +ET L + S + + L ++ P +L Sbjct: 139 MDDLVGGFP-HNDIIMETTYRTMKKAKHFLKDYPQKEKRSNIYICLHDIDTP-----VLH 192 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S+V G E + + ++N+ + + S GF+ + Sbjct: 193 SSV--------------------------GTSEFLDFFHVNNMLTFMDDLKSCGFKILST 226 Query: 213 SSDSKKPLE----QEI------KNDKIALILGAEGKGLRPKTQETATSMAHLH------- 255 + QE+ KN+KI +ILG E KGL + E + +++ Sbjct: 227 CCHPNDSIPNDRLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYINGHRTEVA 286 Query: 256 -MPGI-------IKALNVSNAAAVALYITQNH 279 P + + +LNV+NA A+ L+ +H Sbjct: 287 PTPDLNHNGEFTLDSLNVNNACAILLHHFTSH 318 >gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] Length = 178 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 1/151 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P A+ + +VLD V DP N+G +LRSA A ++ K + + S + ++ GA Sbjct: 20 PDAGALPDKGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGA 79 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++L L + F T L + + L E + A + G EG G+ Sbjct: 80 HFLSEIYPQADLEIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKA 138 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M ++LNV+ AA + L+ Sbjct: 139 VLDRADKCVRIPMHDATESLNVAMAATICLF 169 >gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus] gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus] gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus] Length = 418 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 210 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266 >gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis] Length = 201 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R +L +++ + D N+ A+ RSA A + + +SA+GA + + Sbjct: 43 AARTFNVLPIVESIYDMGNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWL 102 Query: 188 PYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ + + G+Q + LS D+ + Q A I+G E +G+ + Sbjct: 103 DVQVFNSTEECVLNAKRLGYQVVATHLSPDAVD-ISQIDWTRPTAFIMGNEKRGVSCEAV 161 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + A + M G + + N+S AAA+ +Y Sbjct: 162 ALADACAVVPMVGFVDSYNLSVAAALIMY 190 >gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400] gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400] Length = 275 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 15/255 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H SA L+ + + T AL + Sbjct: 21 RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEM-CIVTDGALRHDEAQ 79 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139 A + + T+P D + G+ VH G+ L L +P D V +Q +VLD Sbjct: 80 AIVSRIEDHRLVTLP----DALFGQLSNVVHGVGILLLVEKLATPLPDEV--AQTCLVLD 133 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+G+ILRSA A + + + S+ + +S GA H ++I +A Sbjct: 134 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVEAQ 190 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S + + + +A + G EG G+ ++ + + PG Sbjct: 191 ALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPGG 250 Query: 260 IKALNVSNAAAVALY 274 +++LNV+ AAAV ++ Sbjct: 251 MESLNVAAAAAVCVF 265 >gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC 39073] gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC 39073] Length = 272 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T+PL SP L ++ + DP N+G I R+A+ G+I T+ + + Sbjct: 115 TSPLHSP--------PLFIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVV 166 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +SA GA +P +K+ G + + + L Q +ALI+G+E Sbjct: 167 RSAMGATFRLPVAGGVEPALLARKLQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSEN 226 Query: 238 KGLRPKTQETATSMAHLHMPG 258 G P+ AT + + G Sbjct: 227 HGPGPELLAAATERVGIPLVG 247 >gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium tuberculostearicum SK141] gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGAL 184 +D R+S + + + ND NIG ++R+A AF+ D + I +R A++ + Sbjct: 76 IDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLM 134 Query: 185 EHIPYIRISNLTDALQKMHSW----GFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239 H ++++K+ +W G + + ++ PLE ++ L+ G EG G Sbjct: 135 HH----------ESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPG 184 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q+ A + G +++N AA +A++ Sbjct: 185 VTQAAQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 219 >gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta] Length = 420 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190 L ++ D++ DP N+G ILRSA C ++ TK P E VL ++ GA +P I Sbjct: 210 LSLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVL-RAGMGAHFQVPII 266 >gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus] Length = 418 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 210 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266 >gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 517 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 13/113 (11%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A+ TAP + +V + L + L+ V DP N+G I+R+A A DG+ + + Sbjct: 93 AIATAP--RSEMQSVATASLGLALETVQDPGNLGTIIRTAAAAGADGLWLSGDSVDLDHP 150 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWG-----------FQTIGLSSDS 216 + +S++GA +P +L + + G F +GLS D+ Sbjct: 151 KVLRSSAGAWFRLPMAVTYDLKAEISRCQHQGMQNFRNFTRCKFDLLGLSRDA 203 >gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 243 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191 +++ LD+V DP N+G ++R F + +I + + + ++ G+L + Y+ Sbjct: 98 VILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVD 157 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + + D + E D + LILG E G+ P+ + A + Sbjct: 158 LAGF------LATCALPLYAMDLDGENLYTTEFPEDCV-LILGNEANGISPEVRALADGI 210 Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273 + G ++ +LNV+ A A+ + Sbjct: 211 ITIPRFGKLQQTESLNVAMAGAIVV 235 >gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] Length = 176 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 6/157 (3%) Query: 124 PTLDAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P++D + L +VLD V HN+G++ R++ F+ + I+ + K+A Sbjct: 7 PSVDEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTA 66 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEG 237 GA + + + N+ +A+ + G + I + + + + ALI G E Sbjct: 67 LGATQSVAWQYEKNIEEAIINLKQEGKKIIAIEQAEGSTMLHRFTPVLGESYALIFGNEV 126 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + + G + NV +A + L+ Sbjct: 127 NGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLW 163 >gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 279 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 11/187 (5%) Query: 93 VKTVPPQTIDKIVGKE--AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V VP + K+ GK+ G+ E LS T+D + + + +V+ + DP N+G + Sbjct: 91 VIEVPTDILAKVTGKDNPQAVAGVYAEWDTGLS-TIDR-KAAPIWLVVQAMRDPGNLGTM 148 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQ 208 LR+A A G+I + S +++ GA+ + + R + + L++ Q Sbjct: 149 LRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQARWAEFQEWLRQGEG---Q 205 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSN 267 + S +P +++G E +GL P+ E A + + M G +LN + Sbjct: 206 LVAASLRDAQPYRGAPYAAPCFVMVGNESRGL-PEEYEMACDLRVTMPMKGRADSLNAAV 264 Query: 268 AAAVALY 274 A AV Y Sbjct: 265 AGAVLAY 271 >gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153] gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis OX99.30304] Length = 261 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus] Length = 413 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 205 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 261 >gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 299 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189 Q L+VL + +P N+ + R F+ + ++ + + + +A + S L +P+ Sbjct: 144 QPLIVLSSLLQNPVNVAGLFRCGEIFAIEKVVVSDQAVFAHPHFVAAARSAEL-WMPWDA 202 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + NL + L + G+ IG+ + + ++ A++LGAEG G+ + Sbjct: 203 VMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAILLGAEGHGVPAELLPVL 262 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 + G+I++LNV A+ +Y T+ H + Sbjct: 263 DVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLME 297 >gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15] gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15] Length = 1320 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 12/156 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++V + + N+G + R A +F + + + A S + +H P Sbjct: 1156 RPASVILVASLIENCTNVGGLSRVAESFGLEALYIGDLRQTAHKDFKATSVTSE-KHFPI 1214 Query: 190 --IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--------IKNDKIALILGAEGK 238 ++ + D L M G+ +G+ +D L E I K L+LG+E Sbjct: 1215 HELKAGGVPDFLIAMKRNGYVAVGIEQTDQSSILGTEDTGNASLGILPRKCVLVLGSEKG 1274 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + G+ ++LNV A +ALY Sbjct: 1275 GITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALY 1310 >gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 248 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191 +++ LD+V DP N+G ++R F + +I + + + ++ G+L + Y+ Sbjct: 98 VILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVD 157 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + + D + E D + LILG E G+ P+ + A + Sbjct: 158 LAGF------LATCALPLYAMDLDGENLYTTEFPEDCV-LILGNEANGISPEVRALADGI 210 Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273 + G ++ +LNV+ A A+ + Sbjct: 211 ITIPRFGKLQQTESLNVAMAGAIVV 235 >gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 1716 Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 28/255 (10%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 MQ F ++ +P F Y HT S AL F + T A+A L D ++ Sbjct: 1473 MQHF--EASRVLEPLKEFPYIPHTKSTAL-------FCVDYTPEAVAVLTADTHIS---- 1519 Query: 93 VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + G E V + + + L P ++++ + +P N+ Sbjct: 1520 ------EGMSSVTGYENVQRKATPWWSSQLYDELHPRALKTERQPVIVIASLLQNPVNVA 1573 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWG 206 + R F+ + ++ + +A + S L +P+ +++ L+ L + G Sbjct: 1574 GLFRCGEVFAVEKVVVSDAAVLEHPHFVAAARSSDL-WLPWSAVQVKALSGYLSSLRQDG 1632 Query: 207 FQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + +G+ + P+ + ++LGAEG G+ + + G+I++LNV Sbjct: 1633 YTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNV 1692 Query: 266 SNAAAVALY-ITQNH 279 ++ +Y T+ H Sbjct: 1693 HVTGSIVMYEYTRQH 1707 >gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 253 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186 A R L + ++ V+ PHN+ AI+R+A A GI P K +A G+ Sbjct: 24 AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 80 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ A+ ++ + G Q + SDS A+++G E G+ Sbjct: 81 VDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIG---- 136 Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQN 278 E A ++A H M G++++LNVS AAA LY Q Sbjct: 137 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQR 173 >gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_59C08] Length = 234 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ +L V N+G +R A G+I T ++ + + ++A +P + Sbjct: 89 LIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIVRAAMRTNRFMPVV--- 145 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D L+ + SW + + + +++P + ++ D I LI+G E G+ + E A Sbjct: 146 FGCDELEALKSWKGRVLAIEDVGTEEPWDADLTGDVI-LIIGGENAGVSKELLEVADQTI 204 Query: 253 HLHMPGIIKALNVSNAAAV 271 + M G + N+ AV Sbjct: 205 RIPMAGFTPSYNLQAPMAV 223 >gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 244 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD V DP N+G I+R F+ +I +K + + ++ G+L + I Sbjct: 98 LLALDGVRDPGNLGTIIRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVI---- 153 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SM 251 TD + +++ G + + + + D +++G E G+ + +E ++ Sbjct: 154 YTDLHKHLNTLDLPIFGTFMNGESVYSKPLPED-FVIVMGNEANGVTKEIEELCNHRIAI 212 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 ++LNV+ A A+ L Sbjct: 213 PQFGSGAPTESLNVATATAITL 234 >gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 158 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G ++R A C + E ++ ++ E+ R S Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRHSGW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T L+ M + L++ + + ++ GAE +GL P+ +ET L Sbjct: 64 TALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPELRETFPPAQRLR 123 Query: 256 MPGII--KALNVSNAAAVALY--ITQNHF 280 +P + ++LN+SNA AV +Y QN F Sbjct: 124 LPMLPGQRSLNLSNAVAVTVYEAWRQNSF 152 >gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074] Length = 277 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++ D P NIG+I+RSA AF G+I + + ++ +G+L +P +R+ Sbjct: 119 LGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVP 178 Query: 194 NLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246 + + + ++ + G + +++D K + ++ + + L++G E GL +E Sbjct: 179 SPAEVMAWVERRRAAGLPLVLVATDEKG--DADVYDFDFTQPVLLLVGNETSGLAGAWRE 236 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN +NAA LY Sbjct: 237 VCDVTVSIPMAGAASSLNAANAATAVLY 264 >gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] Length = 310 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V + NDP N G ++RSA A D ++ T ++++G+L H+P + Sbjct: 143 RLVAVCEGANDPGNAGTVIRSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVA 202 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + + + G + S + + L+ + A + G E +GL P T +A Sbjct: 203 EDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLAGPTAWVFGNEARGLTPATAASA 262 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + G ++LN++ A+A+ LY + Sbjct: 263 DAAVRVPVYGQAESLNLAVASALCLYAS 290 >gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera] gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera] Length = 217 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ ++ HN+G + RSA A +I R + + + G+ H+ + +L Sbjct: 7 VVVHNIAKRHNVGTLARSASALGVSELILVGRRDFN-----SFGSHGSTSHLRFRHFHSL 61 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 DA + G+ +D+ + Q A +LG EG GL K E ++ Sbjct: 62 LDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVYI 121 Query: 255 -HMPGIIKALNVSNAAAVALY 274 G +LNV+ AA++ L+ Sbjct: 122 PQYGGGTASLNVTVAASIVLH 142 >gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 235 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ VL ++DP N G ++R A A ++ + + ++++G+L H+P R Sbjct: 81 LVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNGKAVRASTGSLFHLPVARDR 140 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETAT 249 +++ G + +G + L+ +A + G+E GL Sbjct: 141 DVSAVFAACREAGLRLVGADGHATDDLDSADLGGALAAPTAWVFGSEAHGLPGDVTAQLD 200 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LN++ AAAV LY Sbjct: 201 GTLRVPLYGRAESLNLATAAAVCLY 225 >gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1] gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1] Length = 303 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 28/174 (16%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAK 178 +LD+V ++ +L+ V+ V DP N G +LR+A A D ++ T Y+P + Sbjct: 120 SLDSVLDAGPRLIAVMCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKA----VR 175 Query: 179 SASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229 S +G+L H+P + +++ + + + + + G+ T+ L + + + N + Sbjct: 176 STAGSLFHLPVVLGADVEELVAQCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVA 235 Query: 230 ---------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + G E +GL A + + G ++LN+ AA V LY Sbjct: 236 SDYALESPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNLGTAATVCLY 289 >gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens] Length = 420 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL++ D++ DP N+G ILRSA C ++ TK + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRAGMGAHFRMPII 266 >gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis familiaris] Length = 423 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190 + D++ DP N+G ILRSA C ++ TK P E VL ++A GA +P I Sbjct: 213 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVL-RAAMGAHFQVPII 266 >gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 258 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 S + + L K +++ + L + + E+K +K A++ G EG G+ Sbjct: 170 SEIINFL-KENNYSIISTYLDKTAIPYNKIELK-EKNAIVFGNEGNGISSDFINITDYKT 227 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 228 IIPILSNTESLNVAVATGIILY 249 >gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 264 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESA-------VLAKSASG 182 +++V++ P NIGA+ R+A A D +I T Y+P+ +L + + Sbjct: 115 IVLVIEAPEKPGNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTAIAS 174 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++E I Y++ + +T A ++S P +Q AL++G E GL Sbjct: 175 SIEVIAYLKENKITIATAAINSKAV-----------PYDQFEYTPPCALVMGTESTGLDQ 223 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LN+S +A + +Y Q Sbjct: 224 LWLNETNQNLMIPMADEVDSLNLSVSAGILMYECQ 258 >gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] Length = 218 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 3/146 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L VL+ + PHN A +R+ + ++ ++ + G+ + I Sbjct: 31 RTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIEK--NNKCTLNPDITLGSSQWINL 88 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248 + N A+ ++ S G+ + S + + LE N+K+A+ G E GL + A Sbjct: 89 NKYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFFGTELTGLSAEVLGAA 148 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++ N+S A A+ +Y Sbjct: 149 DLCVKIPMYGFTQSYNISVAVAIVIY 174 >gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8] gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8] Length = 187 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ +V HN+G++ R++ A + I T E L K+A GA + + + + Sbjct: 27 LVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHKDLHKTALGAQDAVEWSQHDEP 86 Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L+ + G+ L + +++P IAL++G E +G+ P + Sbjct: 87 RPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAFPIALVVGNEVRGIEPDVLDAVDLALE 146 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G +LNV A +A+Y Sbjct: 147 IPQYGAKISLNVGVAYGIAVY 167 >gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio] Length = 449 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++ D V DP N+G++LRSA A C ++ TK + ++A GA +P I Sbjct: 231 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 287 >gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B Length = 445 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++ D V DP N+G++LRSA A C ++ TK + ++A GA +P I Sbjct: 231 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 287 >gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae] Length = 172 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H P Sbjct: 19 RRHCLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLMHHP- 77 Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 D + G + + ++ PLE ++ L+ G EG G+ + Q+ A Sbjct: 78 ----TTADVVAWAKQQGLTIVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDNA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + G +++N AA +A++ Sbjct: 134 RMTCSIAQFGSTRSINAGVAAGIAMH 159 >gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205] gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205] Length = 249 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGA 183 ++ S+L + LD V DP N+G I+R A F I T Y+P V A S A Sbjct: 96 SINTSELSLALDGVQDPGNLGTIIRIADWFGITHIYCSQDTADVYNP--KVVQATMGSIA 153 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + Y + L ++L G D +Q+++N + +++G EGKG+ P Sbjct: 154 RVKVEYGDLLGLVESLPA----DVPVYGTLLDGDNIYQQKLENRGL-IVMGNEGKGISP 207 >gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] Length = 312 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L +++ + D N+ A+ R+A A + R + V ++A+GA + + Sbjct: 88 RTFSVLPIVEGLYDMGNLAAVCRTADALGYGAVHCINR-GDVKYKVSQRTAAGADKWLDV 146 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + L + S G+Q I S S +E+ A ILG E G+ + A Sbjct: 147 KMWDSTAECLAAVRSAGYQIITTHLSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAAA 206 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G++++ N+S A+A+ +Y Sbjct: 207 DACAIIPMTGMVESFNISVASALIMY 232 >gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis] Length = 327 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 17/154 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIIT---TKRYSPSESAVLAKSASGAL 184 R + +V++ + D NI A++R+A + F +IT TKRY S + + G+ Sbjct: 128 RTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSM-----GSE 182 Query: 185 EHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + + N + + + S G++ +G + S ++ + A++LG E +G+ Sbjct: 183 KWLDIEQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPT---AIVLGNEHRGI 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + M G++ + NVS AA + ++ Sbjct: 240 SGEALKFSDIKCSIPMTGMVDSFNVSVAAGIFMH 273 >gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio] Length = 448 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++ D V DP N+G++LRSA A C ++ TK + ++A GA +P I Sbjct: 234 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 290 >gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 210 Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 42/152 (27%) Query: 146 NIGAILRSAVAFSCD-------------GIITTKRYS-----PSESAVLAKSASGALEHI 187 NIG+I+RSA AF D G + T RY P +A L +A+ L Sbjct: 76 NIGSIVRSANAFGADTVHIIGRRRWNKRGAMVTDRYQHVLHHPDVAAFLEWTAANDL--- 132 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P I I N+ ++ I + D K + L+ G EG GL P+ E Sbjct: 133 PIIAIDNVPGSV----------IIETFDIPK---------RCVLLFGQEGPGLSPEAIEA 173 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277 AT + + G +++N S AAAVA+ +ITQ Sbjct: 174 ATDVVEISQFGSTRSINASAAAAVAMHNWITQ 205 >gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex] Length = 476 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L ++ D++ DP N+G I+R A A C +ITT + + ++A+GA Sbjct: 252 LTIICDNIRDPGNMGTIIRCAAAVGCKALITTPDCVDVWDSKVLRAAAGA 301 >gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] Length = 244 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 33/226 (14%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-- 123 +F + KN L + N+ H F + + G E++ L + + L+S Sbjct: 24 LFLVQGEKNVLELTNSTLNVQHIFATAEFLAEHAQALAGFESIEATLDDLTKVSTLVSNN 83 Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPS 171 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P Sbjct: 84 AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP- 142 Query: 172 ESAVLAKSASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKND 227 K+ S + +++S +L D L K + +G G+S + K + Sbjct: 143 ------KTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAE 191 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 I L++G+E G+R + + T + G ++LNV+ A + L Sbjct: 192 GI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-3-3Ab] Length = 151 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 25/142 (17%) Query: 144 PHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIP---YIRIS 193 P N G I R+ A G + RY L ++ EH+ Y S Sbjct: 13 PANTGNIARTCAATRTPLHLVDPLGFRLSDRY-------LRRAGLDYWEHVQLHRYPSWS 65 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252 L A + W F G K L E+ L+ G+E +GL P ET S+ Sbjct: 66 ALVQAHPEARFWCFSVRG------KALYTEVAYQPGDWLVFGSESRGLDPMFLETYPSV- 118 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + G +++LN+SNA A+AL+ Sbjct: 119 RIPLSGPVRSLNLSNAVAIALF 140 >gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319] gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319] Length = 239 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--Y 189 +QL++ LD V DP N+G I+R A F I + + + + ++ G++ + Y Sbjct: 91 NQLVLALDGVQDPGNLGTIIRVADWFGIKDIYCSHDTADCWNPKVVQATMGSIARVQLHY 150 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + ++ + ++L + D + +QE+ + + +++G EGKG+ P Sbjct: 151 VDLNKMAESLPA----DYPIYATLLDGENIYKQELSHHGM-IVMGNEGKGISP 198 >gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius] Length = 329 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 22/33 (66%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 L ++ D+V DP N+G ILR AVA C I+ TK Sbjct: 243 LSLICDNVRDPGNLGTILRCAVAAGCHNILLTK 275 >gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 274 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD V D N+G+ILR+A A ++ + S + ++ GA H R+ + Sbjct: 129 VVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGA--H----RLLD 182 Query: 195 LTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETA 248 L + Q + + + ++D+K L +KND +A ++G+EG+G+ A Sbjct: 183 LYEGWSNQQVLSAVTAPLLAATADAKCDLF-SLKNDLLHPVAWVMGSEGQGVSEDLLAQA 241 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + + +++LNVS AAA+ L+ T Sbjct: 242 KGIS-IPIDPRVESLNVSTAAAICLFET 268 >gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501] gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501] Length = 237 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 + LD V DP N+G ++R F ++ T Y+P + A S A + Y Sbjct: 96 LALDGVRDPGNLGTLIRLCDWFGIGELLCSPDTVDCYNPK--VLQATMGSIARVRVVYKD 153 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ DA + +G G + ++PL I L++G+E GL ++ + Sbjct: 154 LAETLDA-SGLPVYGASMEGEAIGGEQPLSPGI------LVMGSESHGLSGPVRDRLSQT 206 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + G ++LNV+ AAA+ LY Sbjct: 207 WAIPSFGRAESLNVATAAAILLY 229 >gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 248 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD+ + N GA++R A F G++TT P V+ A + + Sbjct: 109 VVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG--------LHFAT 160 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L+ L + ++ +D + L G+E GL P+ + A + L Sbjct: 161 AVERLEVADLPAGPLFALDPEGDDIRSTKLPDDAV-LAFGSERTGLSPELRARADHLLSL 219 Query: 255 HMPGIIKALNVSNAAAVALY 274 M + + N++ + A+ LY Sbjct: 220 PMRPQVSSYNLATSVAMTLY 239 >gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus] gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 103 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 159 >gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 330 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 19/163 (11%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N + DP N G I+R A A DG+I + + +S +G+L H+P Sbjct: 163 KNRGFYAACWQLRDPGNAGTIIRLADAAGLDGVILVDDCVDETNPKVVRSTAGSLFHLPI 222 Query: 190 IRISNLTDALQKMHSWGFQTIG-----------------LSSDSKKPLEQEIKNDKIALI 232 IR+ + D G + L + +QE ++ Sbjct: 223 IRM-GIDDFFAFAQEHGATVVAADAYGTDQVPVKELPAFLDEWRRTGQDQEKAGSAPTIV 281 Query: 233 L-GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L G E +GL + + G ++LNV+ +AAV LY Sbjct: 282 LFGNEARGLDDPLINRCQEAVRIPLYGKAESLNVAMSAAVILY 324 >gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 198 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +++V N G+I+R+A + R + + L H P ++ Sbjct: 49 LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 108 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A Q++ G +PLE + ++ G E +GL P Q + Sbjct: 109 VSYAAQQELTIVGMDNF----PGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQ 164 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G ++LNV +AAA++++ Sbjct: 165 ITQYGSTRSLNVGHAAAISIW 185 >gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus] gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P + Sbjct: 103 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 159 >gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 223 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R + +++ + NIG ++R+A AF + I+ KR++ + V + +HI Sbjct: 70 RRHPFHVAIENFENDMNIGTVVRTANAFMAEAVHIVGRKRWNRRGAMVTDR-----YQHI 124 Query: 188 PYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQ 245 I + D L+ + G + + ++ PLE E+ D + L+ G EG G+ + Q Sbjct: 125 --IHHETVDDLLEWATARGVAVVAIDNTPGSVPLETAELPRDCV-LLFGQEGPGVTAEAQ 181 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + G +++N AA +A++ Sbjct: 182 QAAVMTCSIAQFGSTRSINAGVAAGIAMH 210 >gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999] Length = 251 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 23/205 (11%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKE---AVHQGLALETAPLLSPTLDAVRNSQLLMV 137 + W +LP F V + + ++ I + + + LE+ L+ +SQ + Sbjct: 54 VQWAHDLPISFNVIELTTKQMNNISDTKTPPGIIACVPLESTDQLTTNTTTSADSQRYVY 113 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L V DP N+G I+R+ F ++ + +A + +++ GAL ++P + +L Sbjct: 114 LHEVQDPGNLGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVRASMGALFYVPIEQDISLAQ 173 Query: 198 ALQKMHSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK---TQETAT 249 ++ + + ++I +S P + G E +G+ P+ TQ AT Sbjct: 174 LNERFDEFAYLDMNGESIAATSFKTMP----------CYVFGNEARGV-PRDALTQMPAT 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G I++LN+++A + +Y Sbjct: 223 AFT-IKGAGNIESLNLASAVNMCMY 246 >gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649] gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649] Length = 272 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V + + P N+GA+LR+A A D +I + + + + + G + IP + + L Sbjct: 127 VCEGLEKPGNLGAMLRTADAAGVDAVIAVDPVTDWGNPNVVRGSKGTVFSIP-VASATLG 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + + G + I + D++ +A+ +G E GL + A + M Sbjct: 186 ETIDWLREGGIRLIATTPDTETLHTDADLTGGVAIAVGTEKFGLTDEALRAADLRVRIPM 245 Query: 257 PGIIKALNVSNAAAVALY 274 G + +LN S AAA+ +Y Sbjct: 246 HGQVNSLNASAAAAIVVY 263 >gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804] gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii] Length = 258 Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 29/261 (11%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNA-LAR 80 R++ +K++Q Q + +P L GVH A L P+ +F + LA Sbjct: 7 RDNPQFKQLQRLAQHAGRRGEPA--ILEGVHLCQAWLAEAGPPAWAVFDAGRVQQPELAA 64 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-------QGLALETAPLLSPTLDAVRNSQ 133 L + VPP+ + + H QG+ P +P L A R + Sbjct: 65 L-----------LAAVPPRQALLLESRLLRHLETVETGQGVLFVVDPP-TPALPA-RLDE 111 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ LD V DP N+G ILR A ++ + + + S + + GA + + Sbjct: 112 PMVWLDRVQDPGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQGAHFALALHEHA 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L Q++ + + + L A + G EG+G+ P Q+ A Sbjct: 172 DLQACAQRLE---IPLAATTLEGAQDLYATRLPPACAWVFGHEGQGVAPALQQAAALRVR 228 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + +++LNV+ AAA+ L+ Sbjct: 229 IDHAPAVESLNVAVAAALCLF 249 >gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 182 Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD + HNIG++ R+A AF + I + + + K+A GA E + + Sbjct: 25 IVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGATETVVWEHHE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 N+ + ++ + + + K + K ALI G E G+ + Sbjct: 85 NVLEVIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNEVFGVNQEAIRLCDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +LN+S + + ++ Sbjct: 145 TIEIPQLGTKHSLNISVSTGIVVW 168 >gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis] gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis] Length = 274 Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 37/178 (20%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP----- 188 L ++ D V DP N+G I+R+ A C +ITT+ + + + +G +P Sbjct: 91 LTVICDRVKDPSNLGTIVRTCAAAGCQALITTEYSTDLWDPKVLRGGAGGHFRVPLYGLL 150 Query: 189 -YIRISNL-----------TDALQKM----------------HSWGFQTIGLSSDSKKPL 220 + +I+++ +D K+ H +G + L S Sbjct: 151 SWKQIADMLGDDTRLYLAESDNTGKIIISPWKYFVVENPISWHCYGTLNLDLGSIIIPYF 210 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALY 274 E + ALI+G E G+ + Q A H+ M G I +L+ + A+ +Y Sbjct: 211 EVDWTLGPSALIVGGETTGISTEAQMLACGERGQAVHIPMVGNIDSLSAGISVALIVY 268 >gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis mellifera] Length = 417 Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 18/189 (9%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNN-- 63 K E + K + + KL+ N + + + KSR + +N + L G ++ AL + Sbjct: 80 KNKETEITAKKNKFMKLKENDKIITSLMT-KLKSRKKREKDNEIILEGQRLITDALKSGV 138 Query: 64 -PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 PS I+ ++AT LP + VP +TI L + Sbjct: 139 IPSVIIYNDPSIIAT----------LKLPEEVKLYKVPYKTIQLWSALTTSPGLLGIFKT 188 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P ++ + L ++ D++ DP N+G+I+R A A C+ +I K + +S Sbjct: 189 PDVNNNIPVNNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRS 248 Query: 180 ASGALEHIP 188 A+G +P Sbjct: 249 AAGTHFQLP 257 >gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 6/146 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L+H Sbjct: 74 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLQHH-- 131 Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L+ G + + ++ PLE ++ L+ G EG G+ + Q+ A Sbjct: 132 ---ATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAA 188 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + G +++N AA +A++ Sbjct: 189 RMTVSIAQFGSTRSINAGVAAGIAMH 214 >gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 2037 Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ I+ + +A + S Sbjct: 1868 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARS 1927 Query: 182 GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ + +L L+ + G+ +G+ + +E + A++LGAEG+ Sbjct: 1928 AEL-WIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVLGAEGQ 1986 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A AV +Y T+ H Sbjct: 1987 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029 >gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 2037 Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L P + +++V + +P NI + R F+ I+ + +A + S Sbjct: 1868 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARS 1927 Query: 182 GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238 L IP+ + +L L+ + G+ +G+ + +E + A++LGAEG+ Sbjct: 1928 AEL-WIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVLGAEGQ 1986 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 G+ + G+I++LNV A AV +Y T+ H Sbjct: 1987 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029 >gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] Length = 220 Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust. Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 6/150 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ + HN A++R+ F I ++Y + +K A GA + + Sbjct: 31 RTEHFTVAIEDLFQVHNTSAVVRTCEVFGVQTAHIIEEKYG---KRLDSKIAMGAEKWVT 87 Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR + ++ + G++ + + PL++ K A G E GL + Sbjct: 88 TIRYPHTQPCIEALRGQGYRIVATVPPPGATPLQEFDITPKSAFFFGTERDGLSQEVISQ 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL-YIT 276 A + M G ++LN+S + A+ L Y+T Sbjct: 148 ADECLTIPMVGFTESLNISVSVAIILQYVT 177 >gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 251 Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 5/160 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 LA+ P+ ++ +S L + LD V DP N+G I R A F + + ++ + + Sbjct: 84 LAVFEQPVYEWNINTAAHS-LCLALDDVQDPGNVGTIARIADWFGIEHVFCSQGTADIYN 142 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ GA+ + + NL + ++ + G + K + ++N I +I+ Sbjct: 143 PKTVQATMGAIARVQF-HYCNLPEFIRSASAQDIPLFGTFLNGKDIYGENLENHGI-IIM 200 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG G+ + T L +P + + S + VA+ Sbjct: 201 GNEGNGISTPIAQCITH--RLFIPNYPQGRSTSESLNVAI 238 >gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] Length = 272 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTD-ALQ 200 DP N+GA++R++ AF I+ K + P L + S R+S AL+ Sbjct: 121 DPSNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIF------RVSFFQGPALR 174 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ I +S++ K E D L+ G EG G+ P+ + + +++ + M + Sbjct: 175 QLKKLEIFLIIMSTEGKDAARFEFP-DSFCLLPGMEGPGI-PEILKGSGNVS-IPMAKGV 231 Query: 261 KALNVSNAAAVALYITQNH 279 ++LN + A + LY+ +N Sbjct: 232 ESLNAAMATGIVLYLWRNR 250 >gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 262 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N L + LD V D N+G +LR A F+ D ++ + + + ++ G+ + + Sbjct: 110 NHGLTLALDGVQDAGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARV-QV 168 Query: 191 RISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 L AL ++ G G + + PL + +++G+EG+GL P E Sbjct: 169 HSVELPTALAGVRVPVLGCDLTGENVHALPPLADAV------IVIGSEGRGLSPAVAELV 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAV 271 + + G ++LN + AAA+ Sbjct: 223 SRRVTIPRYGQAESLNAAIAAAI 245 >gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 180 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V +N+G+ R+A A S + + + + + + K+A GA + + Sbjct: 25 VLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGAENTVCWEHAWEA 84 Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++K + G++ + +S L + +I G E G+RP + + Sbjct: 85 RPLVEKARAQGYEIAAVETSVHAVDLFDWTPRFPVLVIFGHEVDGIRPAISALCDTHVRI 144 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +LNV+ A V +Y Sbjct: 145 PMLGAKHSLNVATAGGVVIY 164 >gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] Length = 151 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 10/145 (6%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G ILR + + I P+ +S L+ + +R D+ K Sbjct: 11 PQNTGTILRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVR----HDSWLKFE 66 Query: 204 SW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 W G + I L++ ++P ++ L+LG E G+ A + + M Sbjct: 67 QWRKTAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPG 126 Query: 260 IKALNVSNAAAVAL--YITQNHFAK 282 +++LN++ AAAV + Q FA+ Sbjct: 127 LRSLNIAMAAAVVTGEALRQTQFAQ 151 >gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 273 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189 L +V + P NIGA+LR+A A D +I T Y+P+ + +S+ G + + Sbjct: 125 LYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPN----VIRSSVGGVFTVA- 179 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + L + + + + KP + A+++G E GL E + Sbjct: 180 VAMGTSKEVLDFLQAAKANVYAAALQASKPHTEVSYTGTTAIVVGTEATGLEAIWLEQSN 239 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G I ++NVS AA + ++ Sbjct: 240 QNIRIPMRGKIDSMNVSVAAGILIF 264 >gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] Length = 243 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186 A R L + ++ V+ PHN+ AI+R+A A GI P K +A G+ Sbjct: 14 AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ A+ ++ + G Q + SDS A+++G E G+ Sbjct: 71 VDVKLHPDIGTAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGI----G 126 Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279 E A ++A H M G++++LNVS AAA LY Q Sbjct: 127 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQ 164 >gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 244 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P L L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 92 PELKVPEAKGLMIALDGVSDPGNLGTIIRVADWYGIQHIIASTDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + E D I L++G+E G Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSADGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + T + G ++LNV+ A + L Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 262 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%) Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLT 196 + + P NIG+I R+A +F + + + +S ++A G E++P+ R + +L Sbjct: 125 EDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERADLESLP 184 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLH 255 D + G I KK + +++G+E G+ P+ + A + + Sbjct: 185 DLPLIVLETGGTDISKFEFPKKGI----------VVIGSEELGVSPEAVKKAQGRVITIP 234 Query: 256 MPGIIKALNVSNAAAVAL 273 M GI ++NVS A + + Sbjct: 235 MYGIKASINVSVAFGICM 252 >gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] Length = 176 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+ + L ++D ++S+ L+++LD++ +NIG++ R++ AF + I + Sbjct: 4 LKNSELNRLSVDEFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPP 63 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---I 229 + ++A GA + + + + ++++ + + + E + +K Sbjct: 64 HKDIHRTALGATDSVVWEYCEDTLALVKELQENDVKVAAIEQAENAMMLNEFQPEKQHTY 123 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+ G E KG++ + + + + G +LN+S +A V L+ Sbjct: 124 ALVFGNEVKGVQQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLW 168 >gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 227 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 6/146 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L+H Sbjct: 74 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLQHH-- 131 Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L+ G + + ++ PLE ++ L+ G EG G+ + Q+ A Sbjct: 132 ---ATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAA 188 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + G +++N AA +A++ Sbjct: 189 RMTVSIAQFGSTRSINAGVAAGIAMH 214 >gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 230 Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust. Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 6/142 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +++V N G+I+R+A + R + + L H P ++ Sbjct: 81 LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 140 Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 A Q++ +G+ + S +PLE + ++ G E +GL P Q + Sbjct: 141 VSYAAQQEL-----TIVGMDNFSGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLV 195 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + G ++LNV +AAA++++ Sbjct: 196 QITQYGSTRSLNVGHAAAISIW 217 >gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 17/218 (7%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLS-- 123 +F + KN L + D + F + + ++G E + L + + L+S Sbjct: 24 LFLVQGEKNVLELVKTDYRVQQVFATQDFLDRYSQCLIGYECIEATLEDLTKASTLVSNN 83 Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 P L ++ LD V+DP N+G I+R A + I+ ++ + S Sbjct: 84 AAIAIVEIPQLIEPEAEGFMIALDGVSDPGNLGTIIRLADWYGIKHIVASEDCADPYSPK 143 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + G+ + ++ NL D L+ H G D + I L++G+ Sbjct: 144 TISATMGSFARVTVTQL-NLPDYLKHAH---LPIYGAFLDGENVHNVSFSAQGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T+ + G ++LNV+ AA + + Sbjct: 199 ESHGIREQASQHVTNKITIPSFGGAESLNVAMAAGIII 236 >gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 262 Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%) Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLT 196 + + P NIG+I R+A +F + + + +S ++A G E++P+ R + +L Sbjct: 125 EDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERADLGSLP 184 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLH 255 D + G I KK + +++G+E G+ P+ + A + + Sbjct: 185 DLPLIVLETGGTDISKFDFPKKGI----------VVIGSEELGVSPEAVKKAQGRVITIP 234 Query: 256 MPGIIKALNVSNAAAVAL 273 M GI ++NVS A + + Sbjct: 235 MYGIKASINVSVAFGICM 252 >gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus kowalevskii] Length = 1247 Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 12/201 (5%) Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLM 136 W P + + T T+D + V + + + LL + + N QL++ Sbjct: 1039 WKIRGPMDYTITT--GDTVDDDLMSGDVQKKITPWSETLLDEDVSSASNLRNRKRGQLIL 1096 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISN 194 V ++ N+G I R+ F G + +E + A + IP ++ S Sbjct: 1097 VTSLIDKLPNLGGICRTCEIFGV-GQLVLASLKYAEHKDFQGLSVTAEKWIPLREVKASA 1155 Query: 195 LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L D L ++ G+ IG+ + L Q DK L+LG E +G+ + + Sbjct: 1156 LKDYLLEVRKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVE 1215 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G+I++LNV + A+ ++ Sbjct: 1216 IPQLGVIRSLNVHVSGALLVW 1236 >gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 230 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +DA R+ + + + ND NIG ++R+A AF+ D + R + + LE Sbjct: 74 IDARRHPLHVAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLE 132 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H P + S L AL+ + + ++ PLE ++ L+ G EG G+ + Sbjct: 133 HHPDVH-SLLVWALRN----DLTVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGVTDEA 187 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + G +++N AA +A++ Sbjct: 188 RAGALMTCSIAQFGSTRSINAGVAAGIAMH 217 >gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] Length = 258 Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192 L++LD V+DP N+G I+R A + II TK + + + ++ G++ ++ Y+ Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 S + + L++ + + I D +IK +K +I G EG G+ Sbjct: 170 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNVIIFGNEGNGISDDFINITDYK 226 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + ++LNV+ A + LY Sbjct: 227 TIIPILSNTESLNVAVATGIILY 249 >gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 31/160 (19%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-----AVLAKSASGALEHIPY 189 ++VL P N+GA+ R+ F + K P S +V A+ G EH P Sbjct: 7 IVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPFHSDAVKFSVGARPLLGQAEHFP- 65 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK------PLEQEIK-------NDKIALILGAE 236 +L AL +H ++ L+ + + PLE+ + ++A + G E Sbjct: 66 ----DLAAALADVH----HSVALTRRTGRLRGNLLPLEELSQRFQSVAAQSRVAFVFGRE 117 Query: 237 GKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALY 274 +GL TQE A + A + +LN++ A V LY Sbjct: 118 DRGL--TTQEVALCSQAATIETTDETGSLNLAQAVVVTLY 155 >gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 351 Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 18/180 (10%) Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 V ++ + +A+ P LS + + N + L+VLD + +N+G IL A +F+ D + Sbjct: 173 VRRQDKNDAVAIIKIPCLS---NKINNIKFLLVLDRIRYAYNLGKILNVAYSFNIDCLYY 229 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSSDS--K 217 TK + + + + G +IP+I N + Q K+ T G + D+ K Sbjct: 230 TKHTADPYNPKVMEITKGTHLNIPHI-FGNYQELEQLCKEHKLIPIVAHTKGQNIDTFFK 288 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH---LHMPGIIKALNVSNAAAVALY 274 K + + I LILG+E G P T AH L M + +LNV AA++ ++ Sbjct: 289 KNKIKNNNINGICLILGSESTG--PHTD--VFKYAHPIQLPMHEMTNSLNVFVAASILIH 344 >gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix jacchus] Length = 429 Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LL++ D++ DP N+G ILRSA C ++ TK Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTK 242 >gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18] gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18] Length = 240 Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 ++QL++ LD V DP N+G I+R A F + I + + + + ++ G++ + Sbjct: 91 DNQLVLDLDGVQDPGNLGTIIRIADWFGIENIFCSHETADCWNPKVVQATMGSIARVKLH 150 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 Y+ ++ L D L + D QE+ + + +++G EGKG+ Sbjct: 151 YLNLNELIDHL----PIDYPIYATLLDGNNIYSQELSHHGM-IVMGNEGKGI 197 >gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 261 Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 13/192 (6%) Query: 93 VKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V TV + + + KE H QG+ +P D V + L V DP N+G IL Sbjct: 76 VLTVSAEVLGSLASKE--HPQGIIGVGRARYTPLADLVAGVNGWVALVDVADPGNLGTIL 133 Query: 152 RSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 R+A G+I T + P+ +++ GAL R + + L + Sbjct: 134 RTADGAGFSGVILIGSTVDPFDPAA----VRASMGALFSQQIAR-AGWDELLAWRQARSL 188 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IG S + L+LG+E +GL + ++ + M G +LN++ Sbjct: 189 PVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDSLNLAV 248 Query: 268 AAAVALY-ITQN 278 AA + +Y IT++ Sbjct: 249 AAGILMYEITRD 260 >gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] Length = 154 Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + K + L ++ + + R NL Sbjct: 6 IVLIEPEIPPNTGNIARLCAATAATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLKRWENL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK----TQETATSM 251 + LQ+ H G + ++ EQ I L+ G E GL + QE ++ Sbjct: 66 -EQLQQQHPEGRFWYLSTKVARNCYEQGIYQPGDFLVFGKETAGLPAELLLANQERCLTI 124 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 MPG +++LN+SNAAAV LY Sbjct: 125 P---MPGQVRSLNLSNAAAVVLY 144 >gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1735 Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 16/169 (9%) Query: 122 LSPTLDAVRNSQLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-- 178 L P Q L+VL + +P N+ + R C I T ++ S+ AV A Sbjct: 1569 LHPRALKQEKRQPLIVLSSLLQNPVNVAGLFR------CGEIFTVEKVVVSDQAVFAHPH 1622 Query: 179 ---SASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 +A A +P+ + NL + L + G+ IG+ + + ++ A++ Sbjct: 1623 FVAAARSAELWMPWEAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSMASYRFPERAAIL 1682 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 LGAEG G+ + + G+I++LNV A+ +Y T+ H Sbjct: 1683 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1731 >gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta] Length = 430 Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P DA+ L ++ D++ +P N+G+ILR+A A C+ ++ K + +SA+GA Sbjct: 192 PANDAI---PLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSATGA 248 Query: 184 LEHIPYI 190 +P + Sbjct: 249 HFRLPIV 255 >gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 262 Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 21/149 (14%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + + V DP N+G ++R+A A C G+I S ++ G++ + + S + Sbjct: 121 VAMQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAKAS-V 179 Query: 196 TDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQ 245 + L +W IG S+D KP +LIL G E +GL P+ Sbjct: 180 QEFLAWRETWPGSVIGTLLTATVDHKSADYVKP----------SLILMGNEQQGLPPELA 229 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN+S A + +Y Sbjct: 230 AACDVNVKIPMRGRADSLNLSVATGIMIY 258 >gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae] gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae] Length = 482 Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182 D V S+L++V V+ P N+G I R CD G++T + A Sbjct: 325 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 379 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238 A +P + + + +++ G+ IGL +D L+ + K +LIL G E Sbjct: 380 ADRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 439 Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 G+ P T + + + G+I+++N+ A AV ++ Sbjct: 440 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 475 >gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] Length = 216 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 27/161 (16%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182 R L ++ + V+ PHN+ AI+R+ CD + I T P+ S V S Sbjct: 18 RQPDLTVLTEDVHKPHNLSAIIRT-----CDAVGILDVHSINTTDEFPTFSQVSQGSDKW 72 Query: 183 ALEHI-PYIR--ISNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIALILGAE 236 H P I+ I+ L +++ F L D +P A++LGAE Sbjct: 73 TFLHTHPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQP---------TAILLGAE 123 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G+ + + M G++++LNVS AAAV L+ Q Sbjct: 124 KWGVSEEAANLVDGNIIIPMLGMVQSLNVSVAAAVILFEAQ 164 >gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 273 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189 L++V + P NIGAILR+A A + D +I T Y+P+ + +S+ G+L Sbjct: 121 LILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPN----IIRSSVGSL-FTNK 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++ +Q + + + + KP + A+I+G E GL + E +T Sbjct: 176 IATGTTSEIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNEWLENST 235 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G I ++NVS AA + ++ Sbjct: 236 QNIIIPMHGKIDSMNVSVAAGILIF 260 >gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans Length = 1203 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192 L++V V+ P+N+G I R++ F D ++ ++ A S S + I ++ Sbjct: 1050 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVKR 1109 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251 +NL LQ + + G+ I + + + K A+I +G E +G+ Sbjct: 1110 TNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1169 Query: 252 AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282 + G ++LNV AA +A + Q F K Sbjct: 1170 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1202 >gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 20/186 (10%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRS 153 P+ I+++ G ++ LAL P AV Q L ++LD V DP N+G +LR+ Sbjct: 82 PKQIERVSGLKSPRPLLALCEIP-------AVEAPQALQQPTLLLDDVQDPGNVGTLLRT 134 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 ++ T+ + + + ++ GAL + R ++ L + IG Sbjct: 135 CDWMGIRQVLCTEGCADVYAPKVLQATMGALARVQVYRYTDRAALLTMLKKTEIPVIGTF 194 Query: 214 SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSN 267 D PL + L+LG EG G+ + +A + +P + ++LNV+ Sbjct: 195 IDG-APLRTLRLAPEQPYILVLGNEGNGI--SSDLSALVSQRITIPSPVDNHCESLNVAV 251 Query: 268 AAAVAL 273 A A+ + Sbjct: 252 AGAIVM 257 >gi|194397115|ref|YP_002038555.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] gi|194356782|gb|ACF55230.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] Length = 86 Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG+G+ P E+A + H+ M G ++LNV+ AA + + Sbjct: 36 ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILXF 83 >gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333] gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333] Length = 230 Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +++V N G+I+R+A + R + + L H P + Sbjct: 81 LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEV--- 137 Query: 194 NLTDALQKMHSWGFQ----TIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Q + S+ Q +G+ + +PLE + ++ G E +GL P Q Sbjct: 138 ------QDLVSYAVQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNAL 191 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV +AAA+ ++ Sbjct: 192 ERLVQITQYGSTRSLNVGHAAAIGIW 217 >gi|242022188|ref|XP_002431523.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis] gi|212516817|gb|EEB18785.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis] Length = 1475 Score = 39.3 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 4/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSES-AVLAKSASGALEHIPYIR 191 L++V ++ N+G + R+ F + + ++ + +Y + A L+ +A + +I +R Sbjct: 1329 LIVVASLIDRVPNLGGLARTCEIFGTFEYVLGSLKYVEDKQFASLSVTAEKWI-NIKEVR 1387 Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 NL + L KM G++ IG KPL + K L+LG E +G+ P Sbjct: 1388 PENLLNYLLKMKDDGYKVIGAEQALYSKPLNEVKFPKKSLLLLGNEKEGIPPNLLPLLDI 1447 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV V L+ Sbjct: 1448 CVEIPQVGIIRSLNVHVTGDVMLF 1471 >gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa] gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa] Length = 206 Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-P 219 G++ + S S V++K+++G+LE + N L G++ +G S SK P Sbjct: 69 GVLLCAKNSALLSGVVSKASAGSLELMELRCCKNRMQFLASSAENGWRVLGGSVSSKAVP 128 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + L+LG+EG G + +E S A +++LNVS AA V L+ Sbjct: 129 LNEVLPGQPTILVLGSEGTGDEVEGEEINLERSSAEFGSFLAVESLNVSVAAGVLLH 185 >gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1] gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1] Length = 242 Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 127 DAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +AV N++ L++ LD V DP N+G I+R F ++ ++ + + ++ G+L Sbjct: 89 NAVVNAEGLIVALDDVRDPGNLGTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLT 148 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + +NL + L + G D K + + D I L++G E G+ K Sbjct: 149 RVNVVY-ANLENYLSETK---LPVFGAFMDGKNVYKTNLPKDGI-LVMGNEANGVSEKIS 203 Query: 246 ETATSMAHLHMPGIIK---ALNVSNAAAVAL 273 T + G I+ +LNV+ A + L Sbjct: 204 TLITEKIAIPRFGEIQQTESLNVAMATGILL 234 >gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c] gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName: Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA methylase 3 gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae] gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c] Length = 1436 Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182 D V S+L++V V+ P N+G I R CD G++T + A Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238 A +P + + + +++ G+ IGL +D L+ + K +LIL G E Sbjct: 1334 ADRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 1393 Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 G+ P T + + + G+I+++N+ A AV ++ Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429 >gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a] Length = 218 Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 29 SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 + N A+ ++ S G+ + S + K LE N+K+A+ GAE GL + Sbjct: 87 NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGAELTGLSAEVLG 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174 >gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 285 Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 10/149 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N + + LD V DP N+G ++R+ A GII + S ++ G++ +P Sbjct: 126 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIA 185 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245 + + + +W GL + + K ++ + + L++G E +GL Sbjct: 186 KATT-----EAFLAWRGAFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 240 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN++ A + L+ Sbjct: 241 ASCDRLLRIPQAGRADSLNLAVATGIMLF 269 >gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1] gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1] Length = 268 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL--EHI 187 L++V + P NIGA+LR+A A + D + T Y+P+ + +S+ G + I Sbjct: 120 LILVAEAPEKPGNIGALLRTADAANIDAVFIANPKTDLYNPN----IVRSSVGCVFTTQI 175 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + LQ+ L++ L+ K A+++G E GL + Sbjct: 176 AMGSTAEIISFLQE-KDIAIYCAALTASEHYHLQNYQK--ATAIVVGTEATGLSDEWLNN 232 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + M G I ++NVS AAA+ ++ Sbjct: 233 STQNIIIPMQGKIDSMNVSVAAAIVIF 259 >gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM 17132] gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM 17132] Length = 241 Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 39/156 (25%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP-- 188 +++LD + DP N+G I+R A + + +I T + Y+P + S G+ + Sbjct: 101 ILILDGLRDPGNLGTIIRLADWYGIEHLICSEDTVEFYNPK----VISSTMGSFTRVKPY 156 Query: 189 YIRISNLTDAL-----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 Y+ I + + Q +H W F KN +AL++G+E Sbjct: 157 YLDIHSFMEKYPHPILGADLEGQNVHKWDFP----------------KN--MALVIGSES 198 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ +T+ T ++ G ++LN + A + L Sbjct: 199 HGISAETERQLTDKVNIPRIGKAESLNAAMATGIIL 234 >gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 288 Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 5/156 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL S T+D S L +V + P N+GA+LR+A A D ++ + + + ++ Sbjct: 121 PLASLTVDG--PSWLGLVAQRIEKPGNLGAMLRTADAAGVDAVVAADPVTDWGNPNVVRA 178 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGK 238 + G L +P S T + G T+ +++ L E+ ++A+ +G+E Sbjct: 179 SKGTLFAVPVA--SGTTSETLAWLAHGAVTLVVTTPETDLLHTEVDYTGRVAIAVGSEKH 236 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ AT + M G +LNVS AAAV LY Sbjct: 237 GVDDALLVAATHRVRIPMHGRANSLNVSVAAAVVLY 272 >gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 249 Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187 +Q +VLD V DP N+G I+R+A F I+ T Y+P V A S + I Sbjct: 104 NQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNP--KVVQATMGSLSRTQI 161 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 Y TD + + G D E + + +++G EG G+ K + Sbjct: 162 HY------TDLESFIRTVRLPVFGALLDGTSIYETRWGKEGL-ILMGNEGNGISEKLLDL 214 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G ++LNV AVA I N A+ Sbjct: 215 IDHAVTIPRTGQAESLNV----AVATTIFCNEIAR 245 >gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 274 Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 30/280 (10%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 F L S L + R+ + S QKSR S L G+H V + +P+ K LL Sbjct: 3 FDLITSKENPLFKEIRNLQATGSKGQKSRMASG--QALLEGIHLVQTWVGDPALK--TLL 58 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRN 131 ++ L L+ + + P + ++ G A+ L+ L +AP ++ LD ++ Sbjct: 59 TSEVGLKNLEISQAVYEHLEI--CPSTKVFQLDG--ALWDLLSDLVSAPHIAGLLDLPKS 114 Query: 132 SQL-----------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +++L V D N+G+ILR+A A I + S + ++ Sbjct: 115 TLTTPQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLWSTKVLRAG 174 Query: 181 SGALEHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAE 236 GA + + Y SN Q + + + ++D+++ L +K D +A ++G+E Sbjct: 175 MGAHKLLDLYEGWSN----QQVLSAITAPLLAATADAEQDL-YSLKKDLLHPVAWVMGSE 229 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+G+ A ++ + + +++LNVS AAA+ L+ T Sbjct: 230 GQGISEDLLAQAKGVS-IPIDPRVESLNVSTAAAICLFET 268 >gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 249 Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187 +Q +VLD V DP N+G I+R+A F I+ T Y+P V A S + I Sbjct: 104 NQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNP--KVVQATMGSLSRTQI 161 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 Y TD + + G D E + + +++G EG G+ K + Sbjct: 162 HY------TDLESFIRTVRLPVFGALLDGTSIYETRWGKEGL-ILMGNEGNGISEKLLDL 214 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G ++LNV AVA I N A+ Sbjct: 215 IDHAVTIPRTGQAESLNV----AVATTIFCNEIAR 245 >gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium pseudotuberculosis FRC41] gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium pseudotuberculosis FRC41] gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 223 Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + +D R++ + + + ND NIG ++R+A AF+ D + R + + Sbjct: 61 PAIIKDIDTRRHALHVAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTD 119 Query: 180 ASGALEHIPYIRISNLTD-ALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEG 237 L H P +L D AL + G + + ++ PLE +K L+ G EG Sbjct: 120 RYQHLMHHP--DTQSLVDWALSE----GLTIVAIDNTPGCIPLETAELPEKCILLFGQEG 173 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ Q+ A + G +++N AA +A++ Sbjct: 174 PGVTQAAQKGALMTCSIAQFGSTRSINAGVAAGIAMH 210 >gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 241 Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 18/158 (11%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGALEHIPYIR 191 +++LD V+ N+G I R++ F + + T K+ P E A + A G L+ + Sbjct: 89 MLILDGVSSVANLGGIARTSAYFGVEKFLIAATRKQARPCEEAY--REARGGLDMVDLRL 146 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--------EQEIKNDKIALILGAEGKGLRPK 243 + N+ L+ F IGL + PL E E++ +A+++G E GL Sbjct: 147 VDNVPSFLKGARKTHF-VIGLDIEG-PPLPELMGICPEDELEK-PVAIVIGNEETGLHES 203 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +++ + + + G I L+V A+ L Y+ + + Sbjct: 204 SKQECSVLVGIPGSGAIDRLSVVAETALLLQKYVVEAY 241 >gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 254 Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 15/168 (8%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + + V S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAIFEQPSYTVNPEVVHQS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G D K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPIFGTFLDGKNMYEQPLSANGL- 197 Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271 +++G EG G+ +E AT + L++P ++LNV+ A AV Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPEGQETSESLNVAIATAV 242 >gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans] gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans] Length = 1225 Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192 L++V V+ P+N+G I R++ F D ++ ++ A S S + I ++ Sbjct: 1072 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVKR 1131 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251 +NL LQ + + G+ I + + + K A+I +G E +G+ Sbjct: 1132 TNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1191 Query: 252 AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282 + G ++LNV AA +A + Q F K Sbjct: 1192 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1224 >gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 257 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 211 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249 >gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ] Length = 249 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 V L + L+ LD R S L ++L+ + D N+ AI R+ F + + Sbjct: 38 VEDSLNDQRKELIERILDQ-RISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKG 96 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 P + +++ GA + + + D LQ G Q + + SD P + Sbjct: 97 PMKWT--NRTSQGAHKWVTMQKWYETKDCLQYFKDRGVQIVSTAFSDKAIPYTEVDFTKP 154 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++G E G+ +E + + G ++LNVS AAA+ + Sbjct: 155 TALLMGNESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVI 199 >gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PT L ++ D++ DP N+G ILR A C+ ++ TK + + ++ GA Sbjct: 195 PTTQTKHTLPLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGA 254 Query: 184 LEHIPYI 190 +P I Sbjct: 255 HFRLPVI 261 >gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] Length = 257 Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + Q + L++G+ Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 211 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249 >gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385] gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 257 Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + Q + L++G+ Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 211 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249 >gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 226 Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIR- 191 +L V++ V N AI+RS A ++ + YS + + K A +E R Sbjct: 36 VLPVVEDVYQFRNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTKGADTWVEVEKLPRN 95 Query: 192 ---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 N+ D K+ + + L ++K E E+ + IAL+ G E +G+ + + A Sbjct: 96 MESFQNIKDRRYKIVA-----VSLEKNAKMLPEYEV-TEPIALVFGTEMEGVSQEILDFA 149 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++ NVS AA++ +Y Sbjct: 150 DETLAIPMYGFTRSFNVSVAASICMY 175 >gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] Length = 221 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 11/154 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187 R L ++ ++V+ PHN+ A+LR+ CD GI +P+ S + Sbjct: 17 RQRDLSVLAENVHKPHNLSAMLRT-----CDAVGIGVVHALNPTGGVPTFNETSASAHKW 71 Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQ 245 +R+ +L +A + G Q + + +E+ + +L G E G+ + Sbjct: 72 VELRVHGSLAEARAALG--GVQLLAAHFSGRALDYREVDYTRPTCVLFGNEKHGVSREAA 129 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + + M G++++LNVS AAAV L+ Q Sbjct: 130 DAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQ 163 >gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260] Length = 1409 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 21/163 (12%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGA 183 AV+ S L++V V+ N+G I R CD G++T S A A Sbjct: 1253 AVKRSDLIVVSSLVDKAPNLGGICRL-----CDVLGAGLLTLADIRVKNSPHFKNVAVTA 1307 Query: 184 -----LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAE 236 +E +P +I N +QK S G+ +GL +D L E+K K ++LG E Sbjct: 1308 DRWMPMEEVPVDQIKNYM--VQK-KSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGRE 1364 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277 +G+ + G+I+++N+ A AV + Y TQ Sbjct: 1365 KEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407 >gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307] Length = 152 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H+P ++ S+ + L+ + +G S S+ LE + + D LI G E KGL P+ Sbjct: 54 HVPLVQHSSWGEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADD-WLIFGCETKGLAPEV 112 Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAVALY 274 Q + + M +++LN+S AAAV L+ Sbjct: 113 QANCDDLLLIPMTCSAVRSLNLSVAAAVVLF 143 >gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus] Length = 449 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266 >gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] Length = 157 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 6/146 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIR 191 +L MVL P+N GAI RS VA + +I K Y S + + ++ + +H+ Sbjct: 5 RLKMVLVTPEIPYNTGAIGRSCVALGLE-LILIKPYGFSLDEKSVRRAGTDYWKHVDLSE 63 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D L+ Q D + + L+ G E GL P + Sbjct: 64 YDSWADFLETRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGL-PASVLDGMED 122 Query: 252 AHLHMPGI---IKALNVSNAAAVALY 274 H+P + +++LN++N A A+Y Sbjct: 123 RMFHLPMLDTRVRSLNLANVATAAIY 148 >gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 300 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 26/166 (15%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188 QL+ +L V DP N G +LR+A A D +I + Y+P +S G+L H+P Sbjct: 132 QLIAMLCRVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKA----VRSTVGSLFHLP 187 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS------------DSKKPLEQEIKNDKIAL----- 231 + ++ + ++ G + + + +QE L Sbjct: 188 VVLGADPAEVARQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPLEQPTL 247 Query: 232 -ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G E +GL + E A + + G ++LNV AA V LY + Sbjct: 248 WFFGNEAQGLSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYAS 293 >gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 176 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD++ +NIG++ R++ AF + I + + K+A G+ + + + Sbjct: 25 IIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGSTDAVSWEYAK 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250 + ++K+ + + + + KN AL+ G E KG+ + S Sbjct: 85 TTMEVIEKLKIKDVKICSIEQAENATMLNDFTVEKNTTYALVFGNEVKGVDQNIVNASDS 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN+S + V ++ Sbjct: 145 VIEIPQFGTKHSLNISVSCGVVVW 168 >gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 230 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +++V N G+I+R+A + R + + L H P ++ Sbjct: 81 LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 140 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A Q++ G +PLE + ++ G E +GL P Q + Sbjct: 141 VSYAAQQELTIVGMDNF----PGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQ 196 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + G ++LNV +AAA++++ Sbjct: 197 ITQYGSTRSLNVGHAAAISIW 217 >gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76] gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399] gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385] gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240013] gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76] gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M04-240196] Length = 261 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A +I K + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L + F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLVRYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus] gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus] Length = 413 Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266 >gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 PT L ++ D++ DP N+G ILR A C+ ++ TK + + ++ GA Sbjct: 195 PTTQTKHTLPLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGA 254 Query: 184 LEHIPYI 190 +P I Sbjct: 255 HFRLPVI 261 >gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116] gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116] Length = 244 Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P + + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 92 PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + E D I L++G+E G Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSADGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + T + G ++LNV+ A + L Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260] Length = 1409 Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 21/163 (12%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGA 183 AV+ S L++V V+ N+G I R CD G++T S A A Sbjct: 1253 AVKRSDLIVVSSLVDKAPNLGGICRL-----CDVLGAGLLTLADIRVKNSPHFKNVAVTA 1307 Query: 184 -----LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAE 236 +E +P +I N +QK S G+ +GL +D L E+K K ++LG E Sbjct: 1308 DRWMPMEEVPVDQIKNYM--VQK-KSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGRE 1364 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277 +G+ + G+I+++N+ A AV + Y TQ Sbjct: 1365 KEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407 >gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 458 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++ D+V DP N+G+ILR+A + ++ TK + +SA+GA +P + Sbjct: 238 ITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCVDFWDTKVLRSATGAHFRVPIL 294 >gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales bacterium TW-7] gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales bacterium TW-7] Length = 243 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P D + L++ LD V+DP N+G I+R A + I+T+ + S A K+ S Sbjct: 92 PKADLPKIKGLILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISAT 148 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + +S + D + + G D + + + + + L++G+E G+R Sbjct: 149 MGSFVRVSVSQV-DLPAYLQTLKLPIYGAFLDGQSVHKTQFNGEGV-LLMGSESHGIRQA 206 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 T + G ++LNV+ A + L Sbjct: 207 CAGLVTDKITIPAFGEAESLNVAMATGIIL 236 >gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 244 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 16/207 (7%) Query: 72 LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L KN A D+ N F V D V A+ + PT + Sbjct: 41 LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPE 98 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186 + L++ LD V+DP N+G I+R A + I+ + Y+P K+ S + Sbjct: 99 ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +S TD + G + + + E + I L++G+E G+R + Sbjct: 152 FGRVHVSQ-TDLPAYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273 T + G ++LNV+ A + L Sbjct: 210 YVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] Length = 244 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4] Length = 244 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 263 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 19/146 (13%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + V DP N+G ++R+A A C G+I S ++ G++ + + + + + Sbjct: 124 MQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK-ATIPE 182 Query: 198 ALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 L +W +G S+D KP +++G E +GL P+ Sbjct: 183 FLAWRETWPGSVVGTLLTATVDHKSADYVKPS---------LILMGNEQQGLPPELAAAC 233 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN+S A + +Y Sbjct: 234 DVNVKIPMRGRADSLNLSVATGIMIY 259 >gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1] gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1] Length = 261 Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 15/255 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H SA L+ + + T AL + Sbjct: 7 RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEM-CIVTDGALRHDEAQ 65 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139 A + + T+P D + G+ VH G+ L L +P D V +Q +VLD Sbjct: 66 AIVSRIEDHRLVTLP----DALFGQLSNVVHGVGILLLVEKLDTPLPDEV--AQTCLVLD 119 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+G+ILRSA A + + + S+ + +S GA H ++I +A Sbjct: 120 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVEAQ 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S + + + +A + G EG G+ ++ + + PG Sbjct: 177 ALIERLAAPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPGG 236 Query: 260 IKALNVSNAAAVALY 274 +++LNV+ AAAV ++ Sbjct: 237 MESLNVAAAAAVCVF 251 >gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] Length = 244 Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442] gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442] Length = 261 Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA ++ Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L L F T L + + L E + A + G EG G+ + A + Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRI 232 Query: 255 HMPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 233 PMHDATESLNVAMAATICLF 252 >gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str. MC2 155] gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str. MC2 155] Length = 214 Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 11/164 (6%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T P + +D R L + +++ NIG ++R+A AF+ D + R + + Sbjct: 50 TRPAIVADID-TRRHPLHIAIENFGSDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMV 108 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGA 235 L H D L G + + + S + E E+ + + LI G Sbjct: 109 TDRYQRLRH-----HDTTADLLDFADDAGLVVVAVDNVPGSVRLEETELPRNCL-LIFGQ 162 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277 EG G+ P+ Q A + G +++N AA +A+ +IT+ Sbjct: 163 EGPGITPEAQAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWITR 206 >gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2] Length = 271 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 8/147 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ Q + L V DP N+G ILR+ F ++ + ++ + +S+ GA+ H+P Sbjct: 127 KDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSMGAIFHVP- 185 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + DALQ S F + ++ ++ + +D + G E +G+ PK +A Sbjct: 186 IELDVSLDALQTRFSR-FAYLDMAGEA---VTAPSFSDFDCYLFGNEARGV-PKAALSAF 240 Query: 250 SMAHLHMPGI--IKALNVSNAAAVALY 274 + + G I +LN+++A + +Y Sbjct: 241 NAKAYTIAGSGKIDSLNLASAVNMCVY 267 >gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f. nagariensis] gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f. nagariensis] Length = 148 Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 6/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V + + N+ + R+ + C+ ++ R + A + A + +P + +S Sbjct: 1 LIVVASLLENVPNMAGLCRTCESLGCEALVLPSRAVVASEA-FKRQAVTSERWLPLVEVS 59 Query: 194 --NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L L+++ G+ IG+ + PL+ + L+LG E G+ Sbjct: 60 PRDLAAYLREVRGRGYLLIGVEQAAGSVPLQTFTFPQRCLLLLGNEQSGVPQHLIAMLDK 119 Query: 251 MAHLHMPGIIKALN--VSNAAAVALYITQ 277 + M G+ ++LN VS A AV Y+ Q Sbjct: 120 CVEIPMLGVTRSLNAHVSGAMAVWQYVQQ 148 >gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720] gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720] Length = 1423 Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGAL 184 + S L++V V+ N+G I R CD G++T +A A A Sbjct: 1268 ISRSDLIVVASLVDKAPNLGGICRL-----CDVLGAGLMTLHDLKIKNNAQFKTVAVTAD 1322 Query: 185 EHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGL 240 +P I + + + L + + G+ IGL +D L ++++ K +LIL G E +G+ Sbjct: 1323 YWMPMIEVKPHQIVEYLHQKKADGYTLIGLEQTDKSVVLNKDLQFPKKSLILLGREKEGI 1382 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + + GI++++N+ A AV + Y +QN Sbjct: 1383 PGELLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQN 1422 >gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 240 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 L++ LD V DP N+G I+R + ++ T Y+P + A S +I Y Sbjct: 95 LIVALDDVRDPGNLGTIIRLCDWYGITNLVCSIGTVDCYNP--KVIQATMGSITRVNISY 152 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +S K +G D + + ++ N I L++G E G+ +E T Sbjct: 153 LNLSYFLKQNNKT-----PILGAFMDGENVYKTKLPNSGI-LVMGNEANGVSKTIEEQVT 206 Query: 250 SMAHLHMPGIIKA---LNVSNAAAVAL 273 + + G ++A LNV+ A A+ L Sbjct: 207 NRIAIPRFGTLQATESLNVATATAILL 233 >gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] Length = 254 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD V DP N+G I+R A + II TK + + ++ G++ ++ + Sbjct: 107 VILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRATMGSILNVNLFYLEK- 165 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + ++ + + I D + P + +K A+I G EG+G+ + + + Sbjct: 166 QEIIKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRGICDEFINISDCKTII 225 Query: 255 HMPGIIKALNVSNAAAVALY 274 + ++LNV+ A+A+ LY Sbjct: 226 PILSNTESLNVAVASAIILY 245 >gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] Length = 244 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + Q + L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis] Length = 1848 Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust. Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 4/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR 191 L++V ++ P N+G + R+ F + +I S+ L+ +A L+ + ++ Sbjct: 1690 LVLVASLIDKPSNLGGLTRTCEVFGAEQMIVHSLSCTSDKLFQSLSVTAHKWLK-MSEVK 1748 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250 L + L+ M G+ + + E K K ++LG E +G+ P ++ Sbjct: 1749 RWELEEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSA 1808 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G++++LNV + + ++ Sbjct: 1809 CIEIPQVGVVRSLNVHVSGGITVW 1832 >gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] Length = 240 Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 ++QL++ LD V DP N+G I+R A F + I ++ + + + ++ G++ + Sbjct: 91 DNQLVLALDGVQDPGNLGTIIRIADWFGIENIFSSYETADCWNPKVVQATMGSIARVKLH 150 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 Y+ ++ L D L + D QE+ + +++G EG G+ Sbjct: 151 YLNLNELIDYL----PVDYPIYATLLDGNNIYSQELSRHGM-IVMGNEGNGI 197 >gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus] Length = 459 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P DA+ L ++ D++ +P N+G ILR+A A C+ ++ K + + + ++A GA Sbjct: 215 PVDDAI---PLTIICDNIREPGNLGTILRAAAAVGCEKLLLMKGCTDLWDSKVLRTAVGA 271 Query: 184 LEHIP 188 +P Sbjct: 272 HFRVP 276 >gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + Q + L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186 A R L + ++ V+ PHN+ AI+R+A A GI P K +A G+ Sbjct: 14 AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ A+ ++ + G Q + S+S A+++G E G+ Sbjct: 71 VDVKLHPDIGSAVAELKASGMQIVATHLSESSVDFRTIDYTRPTAILVGQEKHGI----G 126 Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279 E A ++A H M G++++LNVS AAA LY Q Sbjct: 127 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQ 164 >gi|46203294|ref|ZP_00208891.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 132 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDA---VRNSQLLMVLDHVNDP 144 P + P + + KI+G +H G+ T P + P DA + + L+VLD V +P Sbjct: 44 PYRMAPTEELTKILGSP-LHGGILAVTRPKPIRVFDPA-DAHLWAKEGKPLLVLDGVGNP 101 Query: 145 HNIGAILRSAVAFSCDGIITT 165 HN+GAI R+ F + ++ + Sbjct: 102 HNLGAIARTMAFFGLERLLIS 122 >gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] Length = 269 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G + R+A AF D + + + P + SA AL +P R + L Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPSARAPSGAALLDLAER 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + L+ + L+LG EG GL P++ + M +LN Sbjct: 192 HALTPLALTPSGSETLDALEPPARTLLLLGTEGPGL-PESLMVRARRVRIAMAPGFDSLN 250 Query: 265 VSNAAAVALY 274 V+ A A+AL+ Sbjct: 251 VATAGAIALH 260 >gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] Length = 244 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + Q + L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 263 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 21/147 (14%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + V DP N+G ++R+A A C G+I S ++ G++ + + + + + Sbjct: 124 MQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK-ATIPE 182 Query: 198 ALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQET 247 L +W +G S+D KP +LIL G E +GL P+ Sbjct: 183 FLAWRETWPGSVVGTLLTATVDHKSADYVKP----------SLILMGNEQQGLPPELAAA 232 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN+S A + +Y Sbjct: 233 CDVNVKIPMRGRADSLNLSVATGIMIY 259 >gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 290 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 25/151 (16%) Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++RSA A C ++ + + +S G+L H+P LT Sbjct: 136 QVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVGSLFHLPI-----LTMGT 190 Query: 200 QKMHSWG-------FQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242 +W + +DS++P E D I A++ G E +GL Sbjct: 191 DDFFAWCDTHELAVYAADVYGTDSRQP---ESLTDVIAAPETLAGAKAVLFGNEARGLTK 247 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + E + + + G ++LN+ ++AV L Sbjct: 248 EVLERTDRIVSIPLYGKAESLNLGTSSAVML 278 >gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi] Length = 1716 Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 16/169 (9%) Query: 122 LSPTLDAVRNSQLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-- 178 L P Q L+VL + +P N+ + R C I T ++ S+ AV A Sbjct: 1550 LHPRALKQEKRQPLIVLSSLLQNPVNVAGLFR------CGEIFTIEKVVVSDQAVFAHPH 1603 Query: 179 ---SASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 +A A +P+ + NL + L + G+ IG+ + + ++ A++ Sbjct: 1604 FVAAARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAIL 1663 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280 LGAEG G+ + + G+I++LNV A+ +Y T+ H Sbjct: 1664 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1712 >gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] Length = 242 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 16/192 (8%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P P+P + + + ++ QG+ L PL T + + + L V DP N+ Sbjct: 57 PSPWPKHVISDRQMAQL-SDTRTPQGI-LAVVPLPPATRGESASREKALYLHEVQDPGNL 114 Query: 148 GAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 G ILR+ F C +++ P V+ +++ GA+ H+P L Q+ Sbjct: 115 GTILRTLAWFGGFRC--LLSPGSVDPFNPKVV-RASMGAIFHVPLETEVALDTLGQRYAR 171 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKA 262 IG S +K + + + G E +G+ PK T +PG I++ Sbjct: 172 IACLDIGGDSITKPEFQAQ-----DCYLFGNEARGV-PKQALTELGAHAYTIPGAAAIES 225 Query: 263 LNVSNAAAVALY 274 LN+++A +A+Y Sbjct: 226 LNLASAVNMAVY 237 >gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 261 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 17/147 (11%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL V DP N+G ILR+A G+I TT + P+ +++ GAL R Sbjct: 118 VVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAA----VRASMGALFSQQIAR 173 Query: 192 ISNLTDALQKMHSWGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 S + +W Q +G S + L+LG+E GL + Sbjct: 174 TS-----WPDLLTWARQHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAA 228 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LN++ AA + +Y Sbjct: 229 CDLVVRIPMRGRSDSLNLAVAAGILMY 255 >gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum] Length = 1388 Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL-EHIPYI 190 S L++V ++ N+G + R+ F ++ + A S + + I + Sbjct: 1232 SMLIVVASLIDKVTNLGGLARTCQVFGASTLVVDNLSCVEKKEFTALSMTAEKHQSIIEV 1291 Query: 191 RISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ NL LQK G+Q + DS K E + K L+LG E G+ T Sbjct: 1292 RLKNLKSYLQKKKIEGYQIVAAEQTVDSVKLHEMNLPF-KCVLLLGNETSGIPHDLLSTM 1350 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + GI+++LNV A ++ ++ T+ H Sbjct: 1351 DICVEIKQLGIVRSLNVHVAGSLFIWEYTKQH 1382 >gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like [Xenopus (Silurana) tropicalis] Length = 158 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII--KALNV 265 + + +++ +P+ L+ GAE +GL P +ET L +P + ++LN+ Sbjct: 76 RMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPALRETFAPSQRLRLPMVPGQRSLNL 135 Query: 266 SNAAAVALY--ITQNHFA 281 SNA AV ++ QN FA Sbjct: 136 SNAVAVTVFEAWRQNGFA 153 >gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223] gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223] Length = 244 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P+++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PSIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] Length = 257 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 211 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249 >gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 221 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 46/171 (26%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-------------GIITTKRY-------S 169 R +V++++ NIG ++R+A AF G + T RY + Sbjct: 68 RRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 127 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P E A A++ H+ + + N A +P+E + Sbjct: 128 PEEFARYAQA-----HHLAVVAVDNTHGA-------------------EPVETFALPRRC 163 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 AL+ G EG GL P+ + A S + G +++NV AA V + +I Q+ Sbjct: 164 ALLFGQEGSGLSPELRAIAQSAVAIAQFGSTRSINVGVAAGVVMHTWIVQH 214 >gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25] gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25] Length = 244 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 25/228 (10%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-- 123 +F + KN L + H F + Q + G + + L + + L+S Sbjct: 24 LFLVQGEKNVLELASSSLKVKHVFATEAFLEQNASALSGFDCIEASLDDLTKASTLVSNN 83 Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPS 171 P++ + L++ LD V+DP N+G I+R A + II + Y+P Sbjct: 84 AAIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP- 142 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 K+ S + +++S L D + G + + + E + I L Sbjct: 143 ------KTISATMGSFGRVQVS-LVDLPSYLEEANLPVYGAFLEGESVHKTEFAAEGI-L 194 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G+E G+R + + T+ + G ++LNV+ A + L + H Sbjct: 195 LMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRH 242 >gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 152 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 25/142 (17%) Query: 144 PHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIPYIRI---S 193 P N G I R+ A G + RY L ++ +H+ R S Sbjct: 13 PANTGNIARTCAATDTPLHLVDPLGFRLSDRY-------LKRAGLDYWQHVQLYRYPSWS 65 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252 L A + W F G K L E+ L+ G+E +GL P ET S+ Sbjct: 66 ALVQAHPEARFWCFSVRG------KALYTEVTYQPGDWLVFGSESRGLDPLFLETYPSV- 118 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + + G +++LN+SNA A+AL+ Sbjct: 119 RIPLRGPVRSLNLSNAVAIALF 140 >gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 178 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VLD+V N+GA R+ AF+ + I + + + K+A GA +P+ Sbjct: 25 VTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTALGAELTVPWSYYE 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250 + ++H+ G++ + + + + K AL+ G E G+ + Sbjct: 85 TTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAPGVKYALVFGNEVMGVGQSAVDRCDG 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G ++NV+ + V L+ Sbjct: 145 AIEIPQAGTKHSINVAVSGGVVLW 168 >gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135] gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135] Length = 252 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D++ L + LD V DP N+G I+R A F + I ++ + + + ++ GAL Sbjct: 96 DSLPGHSLCLALDDVQDPGNLGTIIRIADWFGIEDIFCSQGTADAFNPKTVQATMGALAR 155 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + +L + ++ G D K Q++ + +++G EG G+ Sbjct: 156 V-RLHYCDLKEFIRVQTERNVPVFGTFLDGKNIYSQKLSAQGV-IVMGNEGNGV 207 >gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 243 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 125 TLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 T+DA+R + +++++ NIG+I+R+A A + R + + Sbjct: 80 TMDAIRADIAARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGRKRWNRRGAMVT 139 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237 ++H P +R L + K G +G+ + + LE + ++ L+ G+E Sbjct: 140 DRYLPVDHRPEVR--ELVEHCSKE---GLTLVGVDNVEGSVALEGAVLPERACLVFGSEA 194 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + + + G +++NV +AAA+ ++ Sbjct: 195 SGLSEEMIRACDIVVAITQRGSTRSMNVGHAAAIVMW 231 >gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC BAA-450] gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P++ + L++ LD V+DP N+G I+R A + I+ +K Y+P K+ Sbjct: 92 PSVKVPQAQGLIIALDGVSDPGNLGTIIRVADWYGIKHIVASKDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + + +S L D + G + + + E + I L++G+E G Sbjct: 145 ISATMGSFGRVTVSQL-DLPSYLEQASIPVYGAFLEGESIHKTEFNAEGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + + T + G ++LNV+ A + L Sbjct: 203 IREQAAKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 350 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 23/157 (14%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF--------SCDGIITTKRYSPSESAVLAKSAS 181 R+ + +V++ ++D NI A RSA A SCD ++KRY+ + + Sbjct: 151 RSYSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVSCD---SSKRYNGNRHVSM----- 202 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEG 237 GA + + + + + S G++ +G+ + S ++ A+++G EG Sbjct: 203 GAEKWLDIEFWDTPKECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPT---AIVVGNEG 259 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ + E + + M G++ + NVS AA + ++ Sbjct: 260 RGISDEALELSDLRCSIPMNGMVDSFNVSVAAGILMH 296 >gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 248 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD+ + N GA++R A F G++TT P V+ A + + Sbjct: 111 VVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 162 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L L + ++ +D + L G+E GL P+ + A + L Sbjct: 163 AVERLTVAELPPGPVFALDPEGDDIRGVKLPDDAV-LAFGSERSGLSPELRARAGHLVAL 221 Query: 255 HMPGIIKALNVSNAAAVALY 274 M + + N++ + A+ LY Sbjct: 222 PMRPQVSSYNLATSVAMTLY 241 >gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] Length = 234 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 13/144 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD +++ N+G I+RS +AF + T Y+P + +++ GA + + Sbjct: 94 IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPK----VVRASMGAFFKLNIQK 149 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250 NL D + + + L S + +++K D+ +L G EG GL PK Sbjct: 150 FDNLEDYKKNFPNNKIYSFLLDESSNEL--RDVKFDEPFSLAFGNEGAGL-PKEYYNENK 206 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + ++ + +LN+ A ++A+Y Sbjct: 207 I-FINQSKDVDSLNLPIACSIAMY 229 >gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN] gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN] Length = 228 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 30/235 (12%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ K ++ Q S + ++L G H SAAL R + + + Sbjct: 12 RDNAFVKDLRRLAQDSTAYRKQGRVWLEGDHLCSAALQRGVRPAIAVFS----------E 61 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDA-----VRNSQL 134 + P + Q K++ + GL + + L SP +DA +R Sbjct: 62 SFWPQ---APAMYAQAASKVI---VLADGLFADISGLESPAPMGFVVDAAPSQGLRPGVA 115 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V D N+G+ILRSA AF + K + + + ++ GA H + Sbjct: 116 TVVLDRVQDAGNVGSILRSASAFGFRQVAALKGGAALWAPKVLRAGMGA--HFALDLVEG 173 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L AL+++ + SS L + A +LG EG+G+ P + A+ Sbjct: 174 L--ALEELGVLDVPLLVTSSHEGDLLHRASLPWPCAWVLGHEGQGVSPALEAQAS 226 >gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] Length = 176 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 5/144 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD + +N+G++ R+A AF + + + K+A GA E + + +++ Sbjct: 28 CLILDDIRSLNNVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAWEHVTD 87 Query: 195 LTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +T ++++ + G+ + S S E N A +LG E G+ + + A Sbjct: 88 VTALVKQLQADGWLVAAVEQADGSTSLADFSPE-PNKPYAFVLGNEVTGVCDEVIQAADL 146 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G +LN++ A + + Sbjct: 147 VLEIPQFGTKHSLNIAVTAGIICW 170 >gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125] gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis TAC125] Length = 257 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P ++ S L++ LD V+DP N+G I+R A + I+T+ + S A K+ S Sbjct: 106 PQAAQLQTSGLILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISAT 162 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + +S + D + + G D + + + L++G+E G+R Sbjct: 163 MGSFVRVSVSQV-DLPAHLATLKLPIYGAFLDGENVHNTQFTGSGV-LLMGSESHGIREA 220 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + T + G ++LNV+ A + L Sbjct: 221 CAKLVTDKITIPAFGQAESLNVAMATGIIL 250 >gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 220 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 4/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + LEH P Sbjct: 67 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPD 126 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A H + ++ PLE ++ L+ G EG G+ + Q A+ Sbjct: 127 ---TGSVMAYAAAHDLTVVAVD-NTPGSVPLETAELPERCLLLFGQEGPGVTAEAQAGAS 182 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + G +++N AA +A++ Sbjct: 183 MTVSIAQFGSTRSINAGVAAGIAMH 207 >gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 270 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V + DP N+G +LR+ A G+I S +++ GA+ I + Sbjct: 120 IWLVAQALRDPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAV-FTQQIAQA 178 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-A 252 D L + S Q + S P +++G E +GL P+ ETA + Sbjct: 179 RWDDFLLWLRSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGL-PENYETACDLRV 237 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +LN + A AV Y + F Sbjct: 238 TMPMRGRADSLNAAVAGAVLAYEVLDTF 265 >gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451] gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451] Length = 244 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P+++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PSIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25] gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25] Length = 268 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 13/160 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P++ + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 116 PSVKVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 168 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + E + I L++G+E G Sbjct: 169 ISATMGSFGRVQVS-LVDLPSYLEEANLPVYGAFLEGESVHKTEFAAEGI-LLMGSESHG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +R + + T+ + G ++LNV+ A + L + H Sbjct: 227 VREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRH 266 >gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax SaI-1] gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax] Length = 214 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 10/151 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + + ++ NIG+I+RS VAF I R ++ V G E+I S Sbjct: 1 MYVAIYNIGKKKNIGSIVRSCVAFRVSKIFVVSR---KKNQVNFFGHMGTCEYITIEYFS 57 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + G ++S + + +N A + G EG G+ +T + Sbjct: 58 SMKELKTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKV 117 Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNHFA 281 ++ G +LNVS + A+ L+ HFA Sbjct: 118 VYIPQYGNGTCSLNVSVSCAIILH----HFA 144 >gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] Length = 297 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ V DP N G ++RSA A D ++ T +S++G+ H+P I Sbjct: 130 RLVAVCIGAGDPGNAGTVIRSADAAGADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVE 189 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 L L ++ + G + + S + + ++ + ++ A + G E GL T A Sbjct: 190 PALAGVLDRLRARGCRIVATSGAADRDIDTAVAAGELDGPTAWLFGNEAHGLASATLAAA 249 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + + G ++LN++ A+A+ LY + Sbjct: 250 DAVLRVPVYGQAESLNLAVASALCLYAS 277 >gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 229 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A AF + R + + + H P + D +Q Sbjct: 93 NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVQWAQGE 147 Query: 206 GFQTIGLS--SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G IG+ DS PLE E+ D + L+ G EG GL P+ E A + + G ++ Sbjct: 148 GLAIIGIDIFPDSV-PLETYELPRDCV-LVFGQEGPGLTPEVHEAAQATLSIEQFGSTRS 205 Query: 263 LN 264 +N Sbjct: 206 IN 207 >gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 180 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + ++L ++ N+G++ R+A A + +I + + + K+A GA + + + + Sbjct: 28 IYLMLHNIRSMWNVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAWEYHA 87 Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251 + AL + G + GL ++ +P D + L++G E GL + E + Sbjct: 88 DPLVALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLELCDEV 147 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + G +LNV+ A+ +AL+ Sbjct: 148 LEIPQYGTKHSLNVAVASGIALF 170 >gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51] gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 285 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L++LD V DP N G ILR+A+A + T+ + + +S GA+ + Sbjct: 136 MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHC 195 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L+ S ++ E +AL++G EG G + Sbjct: 196 QPEEILKVCRSHKIPVFVGDAEGTDLYETHFAQ-PMALVVGNEGNGPSAAFRGPGVKRIT 254 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A + LY Sbjct: 255 IPMSHQVESLNVAMATGIILY 275 >gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 260 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 108 PRIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 160 Query: 180 ASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 S + +++S +L D L K + G + + K + I L++G+E Sbjct: 161 ISATMGSFGRVQVSQVDLPDYLAKAN---LPVYGAFLEGVSVHQTAFKAEGI-LLMGSES 216 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+R + + T + G ++LNV+ A + L Sbjct: 217 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 252 >gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN] gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN] Length = 275 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 15/255 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ YK++++ + + + L G H A L+ + + T AL + Sbjct: 21 RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLAGAYLDVAGQPEM-CIVTDGALRHDEAQ 79 Query: 85 ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139 A + V T+P D + G+ VH G L L +P D V +Q +VLD Sbjct: 80 AIVARIEDHRVVTLP----DALFGQLSNVVHGVGTLLLVEKLDTPLPDTV--AQTCLVLD 133 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+G+ILRSA A + + + S+ + +S GA H ++I +A Sbjct: 134 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDAEAQ 190 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S + + + +A + G EG G+ ++ + + PG Sbjct: 191 ALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDKVSLRVTIPQPGG 250 Query: 260 IKALNVSNAAAVALY 274 +++LNV+ AAAV ++ Sbjct: 251 MESLNVAAAAAVCVF 265 >gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM 17393] gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM 17393] Length = 253 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 22/156 (14%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSP-SESAVLAKSASG 182 +V + L + LD V DP N+G I+R A F + I T Y+P + A + A Sbjct: 98 SVISHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARV 157 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L + P L D +Q + G D + Q++ ++ + +++G EGKG+ Sbjct: 158 KLHYTP------LPDLIQSLKD--IPVYGTFLDGENMYTQKLSSNGL-IVMGNEGKGIGK 208 Query: 243 KTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 + ++ L++P ++LNV+ A AV Sbjct: 209 EVEQLINR--KLYIPNYPAERETSESLNVAIATAVV 242 >gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group] Length = 1489 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++V V+ N+ + R+ F G+ + S E + A + +P + + Sbjct: 1336 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1394 Query: 193 --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L+K G+ IGL + + KPL+ K L+LG E +G+ Sbjct: 1395 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1454 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + GI+++LNV + A+A++ Sbjct: 1455 ACVEIPQLGIVRSLNVHVSGAIAVW 1479 >gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a] gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118] Length = 1436 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182 D V S+L++V V+ P N+G I R CD G++T + A Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238 A +P + + + ++ G+ IGL +D L+ + K +LIL G E Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAF 1393 Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 G+ P T + + + G+I+++N+ A AV ++ Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429 >gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina DSM 3645] gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina DSM 3645] Length = 166 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 14/162 (8%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 TLD R QL++ N+ I+R+A + +I T + K A Sbjct: 14 TLDEPR--QLIVACCQFRSNVNLSRIVRAASCCAVSRVIVT-----GNMKIDPKIARDGA 66 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGL 240 E +P R +L L+++ S G++ +GL + Q+I + L++G E +G Sbjct: 67 EKLPISRHRSLPPVLKELKSEGYRLVGLEQTTNS---QDIHHFSFVRNTVLVIGNERQGT 123 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + G+ + NV+ A +ALY F + Sbjct: 124 PDDVLRLLDDVVEIPVYGMPYSFNVATATCMALYEFCRQFPQ 165 >gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] Length = 261 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++LD + D N+G+ILRSA A + + S ++ GA H+ Sbjct: 110 RIEEDCIILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFHLNI 169 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + ++ + SS + + +A I+G EG G+ E Sbjct: 170 VEHCTIDMLAPRL---AVPLLATSSHADAAVFDTDLRGPVAWIVGNEGAGVSDAWMEHVA 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV A A+ L+ Sbjct: 227 RTVGIPQPGGLESLNVGAATAICLF 251 >gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] Length = 203 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRI 192 +VLD V DP N+G +LRSA A +I K + + S + ++ GA L I Y + Sbjct: 56 CVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEI-YPQ- 113 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++L L + F T L + + L E + A + G EG G+ + A Sbjct: 114 ADLEIWLVRYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCV 172 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M ++LNV+ AA + L+ Sbjct: 173 RIPMHDATESLNVAMAATICLF 194 >gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] Length = 217 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 48/99 (48%) Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++A+G+L H+P R+ ++ AL + G +T + L++ A + G E Sbjct: 113 RAAAGSLFHLPIARVRDVPAALAACSAAGLRTFAAHGYADAELDRVDLAVPTAWVFGNEA 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 GL + A + M G ++LN++ AAAV +Y + Sbjct: 173 HGLPADVLDRADLAVRIPMYGRAESLNLATAAAVCVYTS 211 >gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa Japonica Group] Length = 1727 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++V V+ N+ + R+ F G+ + S E + A + +P + + Sbjct: 1574 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1632 Query: 193 --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L+K G+ IGL + + KPL+ K L+LG E +G+ Sbjct: 1633 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1692 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + GI+++LNV + A+A++ Sbjct: 1693 ACVEIPQLGIVRSLNVHVSGAIAVW 1717 >gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 259 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 22/160 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P +A + +VLD V DP N+G I+R F +I +K + + ++ G+ Sbjct: 103 PKKNAAITKGVRVVLDGVQDPGNLGTIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGS 162 Query: 184 LEH--IPYIRISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 L I Y+ I +L LQ+ + +G G+S S+K I+ D L++G EG G Sbjct: 163 LARVVISYVDIKSL---LQETTLPIYGGVLEGVSLYSEK-----IEEDS-YLVVGNEGNG 213 Query: 240 LRPKTQETATSMAH-LHMPGI-----IKALNVSNAAAVAL 273 + ++E + H + +P ++LNV+ A A+ L Sbjct: 214 I---SEEIIAILTHKITIPQYGASQKTESLNVATATAILL 250 >gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9211] Length = 162 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKM 202 P N G I R+ AF + K S + L K A L++ +I ++ + + K+ Sbjct: 18 PQNTGNIGRTCAAFQIP-LHLIKPLGFSLDSKLLKRA--GLDYWDFIDLTTHENFSAFKI 74 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--- 259 H + IG S PL + + L+ G E GL +E M + MPG Sbjct: 75 HISDKRLIGFSKKDGIPLNKITFKPEDVLLFGREDTGLPEDIREACDLMVSIPMPGKADS 134 Query: 260 -----IKALNVSNAAAVALY 274 +++LN+S+A A+A Y Sbjct: 135 DGSNGVRSLNLSSACAIASY 154 >gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp. lactis HN019] gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp. lactis HN019] gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp. lactis V9] Length = 269 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D P+E ++ L+ GAEG GL K E A + ++ G ++++N AAAV ++ Sbjct: 200 DGAVPMETYRFPERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMH 259 >gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789] Length = 1436 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182 D V S+L++V V+ P N+G I R CD G++T + A Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238 A +P + + + ++ G+ IGL +D L+ + K +LIL G E Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAF 1393 Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 G+ P T + + + G+I+++N+ A AV ++ Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429 >gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM 18228] gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + LD V DP N+G I+R A F I + + + ++ GAL + + Sbjct: 103 LCLALDDVQDPGNLGTIIRIADWFGIHHIFCSNGCVDAFNPKTVQATMGALARV-QLHYC 161 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L LQ G D + QE+ + I +I+G EG G+ P+ ++ Sbjct: 162 DLPAFLQAQPK-EVPVFGTFLDGENLYAQELSTNGI-IIMGNEGNGISPQVAQSV 214 >gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 1436 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182 D V S+L++V V+ P N+G I R CD G++T + A Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333 Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238 A +P + + + ++ G+ IGL +D L+ + K +LIL G E Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 1393 Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274 G+ P T + + + G+I+++N+ A AV ++ Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429 >gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] Length = 255 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 Q LA+ P + T R+S L + LD V DP N+G I+R A F + II ++ Sbjct: 83 QQVLAVFEQPQYTLTPGVARHS-LCLALDDVQDPGNLGTIVRLADWFGIEHIICSQNTVD 141 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G + + + ++L D ++ + G + K EQ + + + Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGE-DIPVFGTFLNGKNMYEQPLTANGL- 198 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271 +++G EG G+ K ET + L++P ++LNV+ A AV Sbjct: 199 IVMGNEGNGIG-KEVETLINR-KLYIPNYPQGKETSESLNVAIATAV 243 >gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_39H11] Length = 232 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ +L V N+G +R A G+I T ++ + + ++A +P + Sbjct: 87 LIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIIRAAMRTNRFMPVV--- 143 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D L + SW + + + +++P + ++ D I LI+G E G+ + E A Sbjct: 144 FGCDELAALKSWKGRVLAIEDVGTEEPWDADLTGDVI-LIIGGENAGVSKELLEAADQTI 202 Query: 253 HLHMPGIIKALNVSNAAAV 271 + M G + N+ AV Sbjct: 203 RIPMAGFTPSYNLQAPMAV 221 >gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 262 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 14/149 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189 L+++ V DP N G ++R A A G+I + Y+P +++ G+ H+P Sbjct: 113 LVVICADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKT----IRASVGSAFHLPV 168 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ 245 + A++ + G L++D + +D +A ++G E GL P+ Sbjct: 169 AVERDPVAAVKAAKAAGLTV--LAADMHGTADLFSADDLLARPTAWLMGNEAWGLPPELA 226 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + + G ++LN+S AAA+ LY Sbjct: 227 AEADEIVSIPIFGKAESLNLSTAAALCLY 255 >gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group] Length = 1695 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++V V+ N+ + R+ F G+ + S E + A + +P + + Sbjct: 1542 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1600 Query: 193 --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L+K G+ IGL + + KPL+ K L+LG E +G+ Sbjct: 1601 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1660 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + GI+++LNV + A+A++ Sbjct: 1661 ACVEIPQLGIVRSLNVHVSGAIAVW 1685 >gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 265 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/154 (20%), Positives = 73/154 (47%), Gaps = 4/154 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ + DP N G I+RSA A D ++ ++++G++ H+P + Sbjct: 98 RLVAICVDTQDPGNAGTIVRSADAAGADAVVFAGASVDPFGGKAVRASAGSIFHLPVVTD 157 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 + DA++++ G + + + + + ++ ++ + G E +GL T +A Sbjct: 158 IGVADAVRQIREHGCRIVATTPSAPRDIDTAQDAGELDTPTGWLFGNEARGLPRATVVSA 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ + + G ++LN++ A A+ LY + A+ Sbjct: 218 DAVLRVPVYGQAESLNLAVATAICLYASARAQAR 251 >gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] Length = 168 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G ++R A C + E ++ ++ E+ +R Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRHPGW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T L++ + L++ + + L+ GAE +GL P+ +ET L Sbjct: 64 TAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPELRETFPPAQRLR 123 Query: 256 MPGII--KALNVSNAAAVALY--ITQNHF 280 +P + ++LN+SNA AV ++ QN F Sbjct: 124 LPMVSGQRSLNLSNAVAVTVFEAWRQNSF 152 >gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 213 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186 + ++VLD + DP NIG ILR+A+A +I T ++P ++ GA Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156 Query: 187 IPYIRISNLTD-----ALQKMHSW 205 + + I+NL LQ+ W Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW 180 >gi|150024795|ref|YP_001295621.1| peroxiredoxin [Flavobacterium psychrophilum JIP02/86] gi|149771336|emb|CAL42805.1| Probable peroxiredoxin [Flavobacterium psychrophilum JIP02/86] Length = 199 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%) Query: 144 PHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQ 200 P IG + S++ + DG + + ++ S+ +L G PY + +S L +A + Sbjct: 31 PLLIGQKIPSSILQTIDGKAVKFEDFTKSKKTILVVYRGG---WCPYCNLHLSALAEAEE 87 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 K+ G+Q I +S DS + L + I DK+ L ++ KG Sbjct: 88 KLIEMGYQIIAVSPDSPESLRETITKDKLNYTLLSDNKG 126 >gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 364 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 103 KIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +I A QG +A+ P ++ + L ++ D++ +P N+G+ILR A A C Sbjct: 126 RIWSDVATSQGVIAVFDLPDQKKIINKFKTVPLTIICDNIREPGNLGSILRVAGAVGCKK 185 Query: 162 IITTKRYSPSESAVLAKSASGALEHIP 188 +I T +A + +SA+G +P Sbjct: 186 VIMTTGCVDLWNAKVIRSAAGIHFRLP 212 >gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis] gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis] Length = 419 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++ D++ DP N+G ILR A C ++ TK + + ++ GA +P I Sbjct: 205 LSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPII 261 >gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica] gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica] Length = 1383 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 5/150 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +L++V V+ P N+G I R + ++T S ++ A A + +P Sbjct: 1227 INRGELILVASLVDKPPNLGGICRLSDVLGAQ-LLTLNDISVAKHPQFKNVAVTADQWMP 1285 Query: 189 Y--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGLRPKT 244 +++ + + ++ G+ IGL +D K L ++ K +LIL G E +G+ Sbjct: 1286 MAEVKVDEIAEFMRAKKREGYTLIGLEQTDQSKQLNKDFVFPKKSLILLGMEREGIPGNL 1345 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G+I+++N+ AAAV ++ Sbjct: 1346 LAELDYAVEIKQIGMIRSMNIQTAAAVIVH 1375 >gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 162 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280 + GAE +GL P+ +ET L +P + ++LN+SNA AV +Y QN F Sbjct: 99 FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 152 >gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16] gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16] Length = 244 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 22/247 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + LFL L N S + Q+ AT+ LA+ N Sbjct: 8 KLLRALGQKKQR--KAHGLFLVQGEKNVLELANSSLTVKQIFATQEFLAQ-----NQSEL 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + D V A+ + P+++ + L++ LD V+DP N+G I Sbjct: 61 SGFECIEASLDDLTKASTLVSNNAAIAVVEI--PSVETPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +R A + I+ + Y+P K+ S + + +S L D + Sbjct: 119 IRVADWYGIKHIVASTDCADPYNP-------KTISATMGSFGRVTVSQL-DLPSYLEQSN 170 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + + + E + I L++G+E G+R + + T + G ++LNV+ Sbjct: 171 LPVYGAFLEGESVHKTEFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVA 229 Query: 267 NAAAVAL 273 A + L Sbjct: 230 MATGIIL 236 >gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group] gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group] Length = 220 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 QL++V V+ N+ + R+ F G+ + S E + A + +P + + Sbjct: 67 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 125 Query: 193 --SNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ L+K G+ IGL + KPL+ K L+LG E +G+ Sbjct: 126 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 185 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + GI+++LNV + A+A++ Sbjct: 186 ACVEIPQLGIVRSLNVHVSGAIAVW 210 >gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus 5a2] gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus 5a2] Length = 258 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYS 169 LA+ T P +P A+ Q +VLD+++DP N+G I+R A + GII T + Y+ Sbjct: 93 LAVATIPDNTPF--AIGEHQYGLVLDNISDPGNLGTIIRVADWYGIAGIICSTNTVELYN 150 Query: 170 P 170 P Sbjct: 151 P 151 >gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] Length = 159 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G I R+ A + ++ +L ++ +H+ + +L + +K Sbjct: 15 PANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYDSLDEFYEK-- 72 Query: 204 SWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGI 259 + G + L+ +KP E K I G E GL + +E A + M G Sbjct: 73 NAGGEFFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEVKENNKDRALRIPMTGN 132 Query: 260 IKALNVSNAAAVALY 274 +++LN+SN AA+ +Y Sbjct: 133 VRSLNLSNTAAILIY 147 >gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 240 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 9/149 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIR 191 ++ +VL +P NIGA+ R+ F D + YS P A A +AS L+ Sbjct: 10 RVAVVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYSIPLAEARSAVNASHVLQAAR--E 67 Query: 192 ISNLTDALQKMH-SWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ +A+ +G IG D+ + + + DKIA++ G+E GL + Sbjct: 68 FGSVAEAVADCQLIYGTTAIGERKPEHPVDALPDVLEHVGADKIAILFGSEKTGLSNEAL 127 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M ++N+ AAAV LY Sbjct: 128 SHCQRLLTIPMSATNVSMNLGQAAAVILY 156 >gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda melanoleuca] gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca] Length = 423 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 212 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 265 >gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120] gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120] Length = 273 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ L+ + DP N+G I+R+A A G++ ++ ++ + ++++G + Sbjct: 124 VVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATAVSE 183 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252 +L +Q G Q + + + K EI K +LI LG EG GL P A Sbjct: 184 DLKATVQLCQQAGMQVVA-TLPTAKLTYWEIDWRKPSLILLGNEGAGLSPDLAAMADQEV 242 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++LNV+ +A+ LY Q Sbjct: 243 KIPLSPGVESLNVAITSALMLYEVQRQL 270 >gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR L ++ D P NIG+I+RSA A G+I + +S++G+L +P Sbjct: 122 VREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLP 181 Query: 189 YIRI 192 +R+ Sbjct: 182 AVRV 185 >gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes] Length = 287 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 VR L ++ D P NIG+I+RSA A G+I + +S++G+L +P Sbjct: 122 VREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLP 181 Query: 189 YIRI 192 +R+ Sbjct: 182 AVRV 185 >gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 162 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280 + GAE +GL P+ +ET L +P + ++LN+SNA AV +Y QN F Sbjct: 99 FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 152 >gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 244 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 92 PRIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 S + +++S +L D L K + +G G+S + K + I L++G+ Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E G+R + + T + G ++LNV+ A + L Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 302 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188 R S+L++V++ + HN AILR+A A G+ SP ++ L A A E + Sbjct: 1 RTSRLVIVVERCTNDHNYSAILRTAEAL---GVQHVYIISPKTINSTLVDEA--ATEWLT 55 Query: 189 YIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + ++ + S + LS + E+ I+ K+A++ G E G + Sbjct: 56 VHEFDDTKECIETLRSENREIWVTDLSQVASCLTEEGIQ--KVAIVFGTEAVGCTAEMLN 113 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A +L + G +LN+S A A+ ++ Sbjct: 114 AADLRVYLPLRGFADSLNLSVATALVVH 141 >gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 586 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V+DP +G +LR+A F D +I T + + ++A GA Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGA 287 >gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 261 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 38/159 (23%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184 LL++ + P NIGA+LR+A A D +I T Y+P+ + +S+ G + Sbjct: 116 LLLIAEAPEKPGNIGALLRTADAAGVDAVIIANPKTDLYNPN----IIRSSVGCVFTTQI 171 Query: 185 ------EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 E I +++ I+ + LQ+ + Q D P A+++G Sbjct: 172 ATGTTAEVISFLQEKGIAVYSAILQEAVDYAAQ------DYTTP---------TAIVVGT 216 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL + + T++ + M G I ++NVS AA + ++ Sbjct: 217 EATGLSQEWRTVGTNI-KIPMRGKIDSMNVSVAAGILVF 254 >gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40] Length = 218 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 29 SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 87 NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174 >gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 586 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V+DP +G +LR+A F D +I T + + ++A GA Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGA 287 >gi|218458015|ref|ZP_03498106.1| hypothetical protein RetlK5_00622 [Rhizobium etli Kim 5] Length = 40 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/27 (66%), Positives = 23/27 (85%) Query: 243 KTQETATSMAHLHMPGIIKALNVSNAA 269 KT+ET T+++ L MPG IK+LNVSNAA Sbjct: 1 KTRETVTALSRLDMPGAIKSLNVSNAA 27 >gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 241 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 8/145 (5%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S L++ LD V DP N+G I+R F + + ++ + + ++ G++ + + Sbjct: 96 SGLILALDDVRDPGNLGTIIRLCDWFGIETLFCSEESVDIYNPKVVQATMGSISRVNVVY 155 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L L K F T S+ + QE + +++G E G+ P ++ + Sbjct: 156 -GSLEAFLTKTKLPIFGTFMDGSN----IYQEALPKEGVIVMGNEANGISPSVEKLVSER 210 Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273 + G I+ +LNV+ A A+ L Sbjct: 211 IAIPRFGNIQLTESLNVATATAIIL 235 >gi|297798722|ref|XP_002867245.1| hypothetical protein ARALYDRAFT_491486 [Arabidopsis lyrata subsp. lyrata] gi|297313081|gb|EFH43504.1| hypothetical protein ARALYDRAFT_491486 [Arabidopsis lyrata subsp. lyrata] Length = 1081 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 +YA+ R + + F+ SRH SQP L +G HTVS + P + + T L Sbjct: 114 NYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHG-HTVSGEIRTPDTQ--SVRTTSGPL 170 Query: 79 ARLDWDA-NLPHPFPVKTVPPQTID 102 D +A + P+ P + VP + +D Sbjct: 171 GPSDRNAISSPYIDPRQPVPVRIVD 195 >gi|15236786|ref|NP_194967.1| CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] gi|73917709|sp|O48946|CESA1_ARATH RecName: Full=Cellulose synthase A catalytic subunit 1 [UDP-forming]; Short=AtCesA1; AltName: Full=Protein RADIALLY SWOLLEN 1; Short=AtRSW1 gi|2827139|gb|AAC39334.1| cellulose synthase catalytic subunit [Arabidopsis thaliana] gi|4049343|emb|CAA22568.1| cellulose synthase catalytic subunit (RSW1) [Arabidopsis thaliana] gi|7270145|emb|CAB79958.1| cellulose synthase catalytic subunit (RSW1) [Arabidopsis thaliana] gi|30794043|gb|AAP40467.1| putative cellulose synthase catalytic subunit (RSW1) [Arabidopsis thaliana] gi|110740603|dbj|BAE98406.1| cellulose synthase catalytic subunit [Arabidopsis thaliana] gi|332660653|gb|AEE86053.1| cellulose synthase A catalytic subunit 1 [UDP-forming] [Arabidopsis thaliana] Length = 1081 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 +YA+ R + + F+ SRH SQP L +G HTVS + P + + T L Sbjct: 114 NYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHG-HTVSGEIRTPDTQ--SVRTTSGPL 170 Query: 79 ARLDWDA-NLPHPFPVKTVPPQTID 102 D +A + P+ P + VP + +D Sbjct: 171 GPSDRNAISSPYIDPRQPVPVRIVD 195 >gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] Length = 271 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 38/179 (21%), Positives = 81/179 (45%), Gaps = 30/179 (16%) Query: 111 HQGLALETAPLLSPTLDAVRNSQL---------LMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A + P + AV ++ +++ D + + +N+GA++RSA F + Sbjct: 85 HQGV---VAMIEEPCIAAVTPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIEH 141 Query: 162 IITT-----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD- 215 I+ + + +PS + A G +E +I + A + + + L +D Sbjct: 142 IVISGEDAQAQLTPSAYRI----AQGGME---FITLYTAPSAEHFLKACSGYLMRLGADH 194 Query: 216 ----SKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S K + ++ D+ + ++LG E G+ + ++ + + G I++LNV+ A Sbjct: 195 RAYRSLKDIPSLVRADEAVVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAG 253 >gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 189 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280 + GAE +GL P+ +ET L +P + ++LN+SNA AV +Y QN F Sbjct: 126 FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 179 >gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] Length = 247 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L ++ +L++VLD V DP N+G I+R A + II + + + + ++ G+ Sbjct: 100 LPQIQKDELILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFA 159 Query: 186 HIPYIRISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + ++L++ L Q M +G G + + + N +++G+E G+ P+ Sbjct: 160 RVQ-VSHTDLSEYLSQQSMAIYGAFLEG------ENIHKANLNKSAFIVMGSESHGISPE 212 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + + G ++LNV+ A + Sbjct: 213 IEKFISHKMTIPSFGGAESLNVAMATGI 240 >gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 60 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 I G EGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 3 IRGEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 45 >gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 25/169 (14%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHIP 188 QL +VL P N+GA+ R F +I + Y+ + LA LE + Sbjct: 4 GEQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDPATYAFRGAERLAVKGERVLERMA 63 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIALILGA 235 R L +AL + +G +S ++ + L +E ++AL+LG Sbjct: 64 VAR--ELPEALSEC----VYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARGRVALVLGG 117 Query: 236 EGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQNHFAK 282 E +GL E A L +P + ++N++ AA V LY+ A+ Sbjct: 118 EQRGL--SDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGREDAQ 164 >gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 268 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 31/180 (17%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD+ + + +++ NIG+++R+A AF+ + + + L +E Sbjct: 78 LDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVE 137 Query: 186 HIPYIRI------SNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIA----- 230 P I N+ ++ H + + + + + EQ+ KN ++ Sbjct: 138 CCPTIETLVTNWRENMLKEAEEAHQFLLKAQAEGNKEAEKIANIKEQDAKNARVIALDII 197 Query: 231 ----------------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 198 PGAVAMENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257 >gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 542 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A+ +C +T +++ E+A+ + E I S+L A + + + Sbjct: 354 MRTAMGSAC--WMTLRQFGSIEAAITSLRE----EEDCLIYASDLNPASMDVRDLNWD-V 406 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 SS +Q+ + I +++G E +G+ K +E A +L M G ++ N+S A A Sbjct: 407 DYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATA 466 Query: 271 VAL 273 + L Sbjct: 467 ITL 469 >gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 228 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A AF + R + + + H P + D +Q Sbjct: 91 NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVQWAEGE 145 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G IG+ DS PLE L+ G EG GL P+ + A + + G +++ Sbjct: 146 GLAVIGIDIFPDSV-PLETYDLPKNCVLVFGQEGPGLTPEVHDAAVATLSIEQFGSTRSM 204 Query: 264 N 264 N Sbjct: 205 N 205 >gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis] Length = 83 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 202 MHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + GF+T + + D P+ +E D++A+ILG+EG GL P+T + + M Sbjct: 1 LQELGFKTAAMALRDNTVDIDDPVLKEA--DRLAVILGSEGPGLLPQTIAESDYTIKIPM 58 Query: 257 PGIIKALNVSNAAAVALY 274 + +LNV+ A+++A + Sbjct: 59 AERVDSLNVAAASSLAFW 76 >gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis] Length = 164 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIPYIR 191 +L++V + N+ +I+R+A C G+ KR SA + K A +H+ Sbjct: 18 ELVIVCAPLRTKANLSSIVRTA---GCCGV---KRVIACGSAAIDRKVARDGADHVELEL 71 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 L L+K+ + G++ + L S L K AL++G E GL + + Sbjct: 72 RRTLAPVLKKLSAEGYRLVALEQTSNSTSLHDFAFPRKTALVIGNERTGLDDEELKLVDD 131 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + + G+ + NV+ A A+A+Y Sbjct: 132 CTEIPVWGMPHSYNVATATAMAMY 155 >gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis] Length = 1397 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 9/156 (5%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSA 180 ++++V S+L++V V+ N+G I R + I K++ ++ + Sbjct: 1238 SIESVARSELIVVASLVDKAPNLGGICRLCDVLGVGTMTIHDIRVKQHPQFKNVAVTADR 1297 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGK 238 +E +P I + +A +K+ G+ IGL +DS L E K K ++LG E Sbjct: 1298 WMPIEEVPVDGIISYMNA-KKLE--GYTLIGLEQTDSSIQLNSEFKFPSKSVILLGTEAH 1354 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + G+I+++N+ A AV ++ Sbjct: 1355 GIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVIVH 1390 >gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 279 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 3/151 (1%) Query: 126 LDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 LDA++ + L+ V DP N+G I+R+A + C G+I S ++ G+ Sbjct: 119 LDAIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRATMGS 178 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + S + L W IG D+ +++G E GL + Sbjct: 179 VFAVTISKASR-EEFLAWRAQWPGSVIGTRLDATHGYRDSPVRHPAIIMMGNEQAGLTDE 237 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LN++ A V +Y Sbjct: 238 LAAACDLNVKIPMRGRADSLNLAVATGVMVY 268 >gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus] Length = 325 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 118 TAPLLSPTLDAVRNSQ-----------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 T PL S ++++ S L++V +N P N+G I R+ F ++ Sbjct: 142 TIPLYSDIFESMKESMYQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFGVKALVIAN 201 Query: 167 --RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQ 222 E L+ SA + +I ++ L L + + G+ IG +++S L+ Sbjct: 202 LDYIKDKEFQCLSVSAERWI-NILQVKPHELQKYLFEKKNAGWSLIGAEQTANSINLLQT 260 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K L+LG E G+ + + G+I++LNV AA+ ++ Sbjct: 261 KFEK-KTILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIW 311 >gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 170 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGA 183 T+ A +L ++L H P N G I RS VA ++ + SE L ++ Sbjct: 4 TVSAKYVPRLHVILWHPEIPPNTGNIGRSCVAVGAKLWLVRPLGFDISEKQ-LRRAGLDY 62 Query: 184 LEHIPYIRISNLTD-------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +H+ + + +L + ++ W F G S S EQ D L+ G E Sbjct: 63 WQHLEWEAVDSLDEIRAKIPEPFEQQRVWLFTKFGQSRYSDVTYEQ---GD--VLLFGCE 117 Query: 237 GKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 GL + S A L +P +++LN+S++A A+Y Sbjct: 118 SAGLPEEIVSQFPSSAKLRLPMRPQVRSLNLSSSATAAMY 157 >gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] Length = 247 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSP 170 L A + TL + + +L++VLD V DP N+G I+R A + I+ + Y+P Sbjct: 89 VLVVAKCKTATLPTIASQELILVLDQVGDPGNLGTIIRVADWYGVKNIVCSPDCADFYNP 148 Query: 171 SE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 +A + A + H P + A+Q+ +G G L Q Sbjct: 149 KVIAASMGSFARINVSHTPLVEYL----AIQEKPIFGAYLEG------SNLHQCALPKSA 198 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++G+E G+ + + + + G ++LNV+ A + L Sbjct: 199 FIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATGIIL 242 >gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 269 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++L+ + DP N+G I+R++ DG+ + + +++ G +P + Sbjct: 116 LGVILETLQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATV- 174 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ + + G Q + ++ ++ Q ++G EG GL A+ Sbjct: 175 DVVEQASTLRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDALMACASVTVK 234 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + +++LNV+ + A+ LY Sbjct: 235 IPVAPEVESLNVAISTALLLY 255 >gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 218 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 18/160 (11%) Query: 125 TLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVL 176 T+DA+ R + +++ NIG ++RSA AF II +R++ + V Sbjct: 54 TMDAIIADLDERRHDFHIAIENWQHDMNIGTVVRSANAFLAKEVHIIGRRRWNRRGAMVT 113 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILG 234 + +H+ + + + + + G +G+ DS PLE L+ G Sbjct: 114 DR-----YQHVRHH--ATVEEFVAWAQEAGLTILGIDIFPDSV-PLETYDLPKNCVLVFG 165 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG GL P+ A + G +++N ++AA +A++ Sbjct: 166 QEGPGLSPEVHAAAKDTLSIEQFGSTRSINAASAAGIAMH 205 >gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 285 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P + + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 133 PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 185 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + E + I L++G+E G Sbjct: 186 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHG 243 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + T + G ++LNV+ A + L Sbjct: 244 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 277 >gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] Length = 218 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 29 SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 87 NLNKYRNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174 >gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group] gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group] gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group] gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group] Length = 224 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203 HN+G + RSA AF ++ R S A + GA H+ + ++L A + Sbjct: 22 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLPLARAYLKD 76 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261 G G+ + + P+ A + G EG GL K E ++ G Sbjct: 77 ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 136 Query: 262 ALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 137 SLNVTVAASIVLH 149 >gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] Length = 218 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 29 SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 87 NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYVKIPMHGFTQSYNISVAVAIVMY 174 >gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 243 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L + +++ + NIG ++R+A AF+ D + R + + LEH + Sbjct: 90 RRHELHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEH--H 147 Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + D + + + ++ PLE + L+ G EG G+ + Q A Sbjct: 148 KTVAEVLDYAAEQD---LAVVAVDNTPGSVPLETAELPRRCLLLFGQEGPGVTEEAQRGA 204 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + G +++N AA +A++ Sbjct: 205 RMTVSIAQFGSTRSINAGVAAGIAMH 230 >gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] Length = 218 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 30 LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWIN 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 88 LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVAIVMY 174 >gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM 4028] gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM 4028] Length = 158 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D I ++LG E +GL P+ A + + + G ++++N++NAAAV LY Sbjct: 90 FRADDI-IVLGPETRGLPPEVLHDAQDLIRIPIWGEVRSVNLANAAAVLLY 139 >gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 254 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 16/125 (12%) Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG+++R+A AF+ + I KR A++ Y I + DA Q Sbjct: 118 NIGSVVRTANAFAVAEVHIVGKRRWNRRGAMVTDR---------YQHIRHHEDA-QAFAQ 167 Query: 205 W----GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 W G IG+ + D P+E L+ G E GL QE + S+ H+ G Sbjct: 168 WAQDNGLTVIGIDNIDGSVPIEGFAFPRASVLVFGQESTGLTQPMQEVSQSVVHITQYGS 227 Query: 260 IKALN 264 +++N Sbjct: 228 TRSMN 232 >gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 213 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 40/147 (27%) Query: 146 NIGAILRSAVAF-------------SCDGIITTKRYS-----PSESAVLAKSASGALEHI 187 NIG ++R+A AF + G + T RY P +A++ + S L Sbjct: 77 NIGTVVRTANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPDVAALVTWARSDGL--- 133 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + + NL A +PLE E L+ G EG GL + ++ Sbjct: 134 PLLAVDNLPGA-------------------RPLETEPLPRACVLLFGQEGTGLSAEARDA 174 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + + G +++N AA +A++ Sbjct: 175 ADGVLSIAQFGSTRSVNAGVAAGIAMH 201 >gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] Length = 218 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 29 SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 87 NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174 >gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 246 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187 S L ++LD V DP N+G I+R F ++ T Y+P + ++ G+L + Sbjct: 101 SGLTLLLDDVRDPGNLGTIIRLCDWFGIKQLVCSIGTVDCYNPK----VVQATMGSLTRV 156 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I +NL + L+ F T D + + + +I+G E G+ +T+ Sbjct: 157 DVI-YTNLEEYLENDSREVFGTF---MDGTNIYNTSLPAEGV-IIMGNEANGISRETEAV 211 Query: 248 ATSMAHLHMPGIIK---ALNVSNAAAVAL 273 ++ + G ++ +LNV+ A A+ L Sbjct: 212 VSNRIAIPRFGDLQETESLNVATATAICL 240 >gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group] Length = 168 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203 HN+G + RSA AF ++ R S A + GA H+ + ++L A + Sbjct: 20 HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLPLARAYLKD 74 Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261 G G+ + + P+ A + G EG GL K E ++ G Sbjct: 75 ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 134 Query: 262 ALNVSNAAAVALY 274 +LNV+ AA++ L+ Sbjct: 135 SLNVTVAASIVLH 147 >gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 274 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 12/154 (7%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ VL HV DP N GA++R+A A DG++ T+ + + +S +G+L H+P Sbjct: 114 RLVAVLAHVRDPGNAGAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSLFHLPVATG 173 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEGKGL 240 + L A+ + + G + + ++ + A + G E GL Sbjct: 174 AELPAAVAALRARGVTVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWVFGNEAWGL 233 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 R + + A ++ + + G ++LN++ AA V LY Sbjct: 234 RDEDRALADAVVRVPIRGRAESLNLATAATVCLY 267 >gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri] gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri] Length = 249 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187 R ++ +V +V HN+G ++RS AF +I +++++ A + GA H+ Sbjct: 29 RRPEMYVVAHNVAKRHNLGMMMRSCTAFDVKALVLIGSRKFN-------AFGSQGADAHV 81 Query: 188 PYIRISNLTDALQKMHSWGFQT--IGLS-SDSKKPLEQEIKNDKIALILG------AEGK 238 + L +A + + + T +G+ +S +P+E A ++G A+G Sbjct: 82 AFEHYETLREAREGLTAKRGVTRVLGVEIVESAEPIESHPFTGNTAFVMGNEARLDAQGH 141 Query: 239 GLRPKTQETATSMAHL--HMPGIIKALNVSNAAAVALY 274 GL + + ++ + PG +LNVS AA++ ++ Sbjct: 142 GLTEQQKAICDGFVYIRQYGPG-TASLNVSVAASIVMH 178 >gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002] gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002] Length = 262 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 121 LLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 LL LDA R Q +VLD V D N+G+ILRSA A + + + + S+ + Sbjct: 98 LLVEKLDAPPPERVEQNCLVLDGVQDAGNVGSILRSAAAAGIEHVFCAPGTAYAWSSKVL 157 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S GA H ++I DA + S + + + +A + G EG Sbjct: 158 RSGMGA--HF-LLQIHEDVDASALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNEG 214 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ ++ + + PG +++LNV+ AAAV ++ Sbjct: 215 AGVSQVWRDAVSLRVTIPQPGGMESLNVAAAAAVCVF 251 >gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator] Length = 1333 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 6/145 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIR 191 L++V V+ P N+G I R+ F ++ + L+ SA + I + Sbjct: 1182 LIVVASLVSRPPNLGGIARTCEIFGVKSLVIANLDCVKDKDFQCLSVSAEKWINMIQ-VT 1240 Query: 192 ISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L L + S G+ +G +++S LE + + I L+LG E G+ Sbjct: 1241 LHELQQYLLEKKSAGWSIVGAEQTANSINLLEAKFEKKTI-LVLGNEKDGIPANFIPLFN 1299 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G+I++LNV AAA+ ++ Sbjct: 1300 TCVEIPQVGVIRSLNVHVAAAICIW 1324 >gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis carolinensis] Length = 406 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++ D++ DP N+G ILRSA C ++ K + + ++ GA +P +S Sbjct: 191 LSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLPI--VS 248 Query: 194 NL 195 NL Sbjct: 249 NL 250 >gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105] gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105] Length = 273 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 8/146 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 Q + +LD + DP N+G +LR+ A + + + S + ++ GA + Sbjct: 125 QDIALLDGIQDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDKVLRAGMGAQFGLQLYTE 184 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248 +L AL S I + S P ++ N + + G+EG+G+ + A Sbjct: 185 LDLLQALSAAKS----KIPVRVTSLHPKSVDLFNADLKPAGVWVFGSEGQGVSQAWLDRA 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + I++LNV +++AV L+ Sbjct: 241 SEHIRIPQSKTIESLNVGSSSAVCLF 266 >gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays] gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays] Length = 286 Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust. Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPS 171 LALE + T+ R +L++V V N+ + R+ F G++ + Sbjct: 115 LALEARLHAAETIKQSRQ-ELIVVASLVERIPNLAGLTRTCEVFRAAGLVVADKSVLQDK 173 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIA 230 + +++ +A L + + + ++ L++ G+ IGL + PL++ D+ Sbjct: 174 QFRLISVTAEKWLP-VTEVPVDSVKAYLERKRGDGYSVIGLEQTANSMPLDRFGFPDRTV 232 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG E +G+ + + G++++LNV + A+A++ Sbjct: 233 LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVW 276 >gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria monocytogenes FSL F2-208] Length = 59 Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +A+++G+EG G+ +E + HL M G + +LN S AA++ LY Sbjct: 3 LAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY 48 >gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 267 Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 1/144 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ ++VLD V+DP N+G +LRSA A ++ ++ + + ++++GAL + + Sbjct: 113 NAGPVLVLDRVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALFAVSFA 172 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + + +H+ + SDS + A+++G+E GL + +T Sbjct: 173 -VLPWEEIHEVLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEASGLSHQALSLSTH 231 Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + M I++LN + A ++ L+ Sbjct: 232 NLWIPMQNNIESLNAAVAGSILLF 255 >gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 279 Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 11/189 (5%) Query: 96 VPPQTIDKIVGKEAVH-----QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGA 149 VP +D+ G EA+ QG+ + + P +AVR + L+ V V DP N G Sbjct: 75 VPWYEVDR-AGVEALSETVTSQGVVAVCSLVDVPLDEAVRRTASLVAVGVQVRDPGNAGT 133 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++R+A A D ++ + + +++ G+L H+P ++ A + G Q Sbjct: 134 LIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAAAKSWRDQGVQV 193 Query: 210 IGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + L++ I + +A + G E GL + + G ++LN+ Sbjct: 194 LAADGYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAESLNL 253 Query: 266 SNAAAVALY 274 + AAAV LY Sbjct: 254 ATAAAVCLY 262 >gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] Length = 273 Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ P+ Q AT + + G I +LNV+ A + LY Sbjct: 220 LVVGNEGAGVSPEVQRYATGRVAIPLAGGIGSLNVAMAGCILLY 263 >gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1] Length = 218 Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + L VL+ + N A +R+ + ++ ++ + G+ + I Sbjct: 30 LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWIN 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + N A+ ++ S G+ + S + K LE N+K+A+ G E GL + Sbjct: 88 LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G ++ N+S A A+ +Y Sbjct: 148 ADLYVKIPMHGFTQSYNISVAVAIVMY 174 >gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 257 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II ++ Y+P K+ Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S + D + G + + K + I L++G+E G Sbjct: 158 ISATMGSFGRVQVSQV-DLPYYLAKANLPVYGAFLEGVSVHQTAFKAEGI-LLMGSESHG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + + T + G ++LNV+ A + L Sbjct: 216 IREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249 >gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 271 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 9/148 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L V DP N+G ILR+A G+I S +++ G++ +P+ Sbjct: 120 GTPLYIALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMGSVFDVPFA 179 Query: 191 RISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 TD ++W G S + + +++G E GL + Sbjct: 180 H----TD-FDAFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNEQAGLPDWVEA 234 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ + M G +LN++ A+A+ +Y Sbjct: 235 ACDTLSLIPMRGGADSLNLAQASALMIY 262 >gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 261 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP N+G +LRSA A ++ K + + S + ++ GA ++L Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADL 174 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L F T L + + L E + + G EG G+ + A + Sbjct: 175 EIWLAHYKGRVFAT-ALREEKQAVLYNEDLREPTTWVFGNEGAGVGKAVLDRADKCVRIP 233 Query: 256 MPGIIKALNVSNAAAVALY 274 M ++LNV+ AA + L+ Sbjct: 234 MHDATESLNVAMAATICLF 252 >gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289] gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289] Length = 242 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A ET+ S T QL++ LD V DP N+G I+R A F D I + + + Sbjct: 75 ADETSKDYSKTFHEHIEGQLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNP 134 Query: 175 VLAKSASGALEHI 187 + ++ G++ + Sbjct: 135 KVVQATMGSIARV 147 >gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] Length = 164 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 1/150 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +++ L P N G I R V + I +K S + ++ EH+ + Sbjct: 9 NFNIIIALYRPEIPANTGNIGRLCVGLNIPLHIVSKPSFIISSKEVKRAGLDYWEHLQLV 68 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 + N L+ +S + + ++ K ++ ++ L+ G E GLR E Sbjct: 69 KHENENTFLEYCNSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRESTGLRESLWENDLE 128 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ M I+++NVSN AA+ Y H Sbjct: 129 NSVYIPMSDNIRSINVSNTAAIVAYEAYRH 158 >gi|302307217|ref|NP_983802.2| ADL294Cp [Ashbya gossypii ATCC 10895] gi|299788893|gb|AAS51626.2| ADL294Cp [Ashbya gossypii ATCC 10895] Length = 1372 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 DAV+ S L++V V+ P N+G I R + G++T A A Sbjct: 1215 DAVKRSDLIVVASLVDKPPNLGGICRLSDVLGV-GLMTVHDLRVKSHPQFKNVAVTADRW 1273 Query: 187 IPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI-LGAEGKGLRP 242 +P + ++++ +++ G+ IGL +D L+ + +LI LG E +G+ Sbjct: 1274 MPIEEVAVADIASFMRQKKLEGYTLIGLEQTDKSVRLDAAFHFPRKSLILLGTEAEGIPG 1333 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G+I+++N+ A AV ++ Sbjct: 1334 YLLVELDMCLEIKQHGVIRSMNIQTATAVVVH 1365 >gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] Length = 225 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194 ++L +P+NIGA R+ F + + P+ A++A GA + + +I N Sbjct: 4 IILVKPRNPNNIGASARAMANFGLSDLRIAGAHIPNLEE--AQAAVGAEDLLKKAKIFDN 61 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQET 247 L DAL + + F L + + + + IK KIA++ G+E GL K E Sbjct: 62 LQDALADCN-FAFAATSLKNRNTQKEIVSLPNINNHIKRGKIAVVFGSEKTGLSVKDIEL 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ L++P K +V+ A AV L Sbjct: 121 CDAV--LNIPTTTKQPSVNLAQAVNL 144 >gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708] gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708] Length = 270 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 2/147 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ ++ + DP N+G ++R+A A G+ + ++ + ++++G + Sbjct: 118 LVLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKAVSP 177 Query: 194 NLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L +Q+ G Q I L + S E + + + ++LG EG GL A + Sbjct: 178 DLKATVQQCQQAGMQVIATLPTASLTYWEVDWRKPSL-ILLGNEGAGLSDDLAAMADTQV 236 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +LNV+ AAA+ LY Q Sbjct: 237 KIPLNPGVDSLNVAIAAALMLYEAQRQ 263 >gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-------------SCDGIITTKRYSP-- 170 LD R+ + V + +D NIG+++R+A AF + G + T RY Sbjct: 74 LDLRRHDFHVAVENWTHD-FNIGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVR 132 Query: 171 --SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S++A L A+ E +P I I NL A+ PLE+ + Sbjct: 133 HHSDTADLTAWATA--EGLPIIGIDNLPGAV-------------------PLERTELPRR 171 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL + +E AT++ + G +++N Sbjct: 172 CVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 207 >gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01] gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01] Length = 244 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P + + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 92 PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + E + I L++G+E G Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + T + G ++LNV+ A + L Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891] gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891] Length = 244 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + LFL L N S K+ Q+ AT L + L H Sbjct: 8 KLLRALGQKKQRKAH--GLFLVQGEKNVLELANSSLKVKQVFATAEFLT--EHQGELGH- 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + D V A+ + P+++ + L++ LD V+DP N+G I Sbjct: 63 --FECIEASLDDLTKASTLVSNNAAIAVVEI--PSIEIPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +R A + I+ + Y+P K+ S + + +S L D + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNP-------KTISATMGSFGRVTVSQL-DLPSYLEQSN 170 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + + + + I L++G+E G+R + + T + G ++LNV+ Sbjct: 171 LPVYGAFLEGESVHRTDFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVA 229 Query: 267 NAAAVAL 273 A + L Sbjct: 230 MATGIIL 236 >gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] Length = 218 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEH 186 A R + + V HN A++RS F GI S + + A GA + Sbjct: 27 AQRTKHFTVATEDVYQLHNASAVMRSCDVF---GIQELNIVEEVNSKSIDREIAMGAQKW 83 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + R + + + + G+Q + + ++ ++ +I K G E +GL + Sbjct: 84 VDLNRFHSTKSCIDHLKTKGYQIVATTPHAEDCDLIDFDITK-KSCFFFGRETEGLSQQV 142 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A + M G ++LN+S +AA+ L Sbjct: 143 IDEADCFLKIPMVGFTESLNISVSAAIIL 171 >gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N] gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 257 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 16/146 (10%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189 ++LD + DP N+G +LR+ A + + S + +S GA EH+ Sbjct: 114 VLLDRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHFAMDIHEHVDL 173 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +S D + + D L +A + G EG+G+ P Q A Sbjct: 174 HALSARLDVPLAVTTL---------DDATSLYDTALPASLAWVFGHEGQGVDPALQAQAA 224 Query: 250 SMAHL-HMPGIIKALNVSNAAAVALY 274 + H +++LNV AAA+ L+ Sbjct: 225 LRLRIPHDMQAVESLNVGAAAAICLF 250 >gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 265 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 16/185 (8%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +TV PQ G AV Q L + A LS R +L+ VL + DP N G +LR+ Sbjct: 86 ETVAPQ------GLVAVCQHLDVPLATALS------RGPRLVGVLAGIRDPGNAGTVLRT 133 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A ++ + +S++G+L H+ +R + + + G + + Sbjct: 134 ADAAGAAAVVFAGEAVDPYNGKCVRSSAGSLFHVDVVRERDPAAVVDAARAAGLVVLAAT 193 Query: 214 SDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + L+ ++A+ + G+E GL + A + + + G ++LN++ AA Sbjct: 194 GYGEADLDDLADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAA 253 Query: 270 AVALY 274 AV LY Sbjct: 254 AVCLY 258 >gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810] gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810] Length = 244 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 13/144 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L++ LD V+DP N+G I+R A + II + Y+P K+ S + Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++S L D + G + + + E + I L++G+E G+R + + T Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHGVREEASKFVT 212 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + G ++LNV+ A + L Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236 >gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 251 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+TV P+ ++++ + LA+ P + ++ +L + LD V +P N+G I+R Sbjct: 57 VETVAPRDMERLSLLKTAANSLAIVETPRYGLDMRSL-AGRLTLALDDVQNPGNLGTIVR 115 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A F I+ ++ + + + ++ GA+ + + ++L L + G G Sbjct: 116 LADWFGIADIVCSEASADCFNPKVVQATMGAILRV-RVHYTDLGAFLHDAGAAGLPVYGT 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMP 257 + + + + + +++G EG+G+ +Q A ++ H L +P Sbjct: 175 FLEGENIYGTTLTEEGV-VVMGNEGRGI---SQAAARAVTHKLFIP 216 >gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 251 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+TV P+ ++++ + LAL P + +R +L + LD V +P N+G I+R Sbjct: 57 VETVAPRDMERLSQLKTPSNSLALVEIPRCDLKPERLRG-RLTLALDDVQNPGNLGTIIR 115 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A F I+ ++ + + + ++ GA+ + + ++L L K + G G Sbjct: 116 LADWFGITDIVCSEASADCFNPKVVQATMGAILRV-RVHYTDLAALLSKAAALGLPVCGT 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + E E+K I +++G EG+G+ T T Sbjct: 175 FLEGANIYETELKPAGI-VVMGNEGRGITDAVARTVT 210 >gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-------------SCDGIITTKRYSP-- 170 LD R+ + V + +D NIG+++R+A AF + G + T RY Sbjct: 63 LDLRRHDFHVAVENWTHD-FNIGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVR 121 Query: 171 --SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S++A L A+ E +P I I NL A+ PLE+ + Sbjct: 122 HHSDTADLTAWATA--EGLPIIGIDNLPGAV-------------------PLERTELPRR 160 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL + +E AT++ + G +++N Sbjct: 161 CVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 196 >gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] Length = 162 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IR 191 +L+V ++ N+ + R+ G + + + V + A + +P ++ Sbjct: 1 VLLVASLIDKLPNLAGLARTCEVMGA-GRLVLADLAATRDPVFTSVSVTAEQWLPMEEVK 59 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 + L L++ + G+ +GL ++ + + K+ L+LG E +G+ P+ + Sbjct: 60 PAALLAWLERRAAEGYTLVGLEQTAQSVRLPDYRWPAKVVLVLGREKEGIPPEVLSLLDA 119 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 + GII++LNV + A+AL Y+ Q F Sbjct: 120 TLEIPQRGIIRSLNVHVSGAIALYEYVRQMQF 151 >gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 197 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 49/216 (22%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N P R F+ + A+LDW+ N PHP L Sbjct: 17 NVPDR--FRYWSNAAITAQLDWELN-PHP----------------------------EDL 45 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179 +P L+ + ++++ NIG+I+R+A I+ +R++ + V + Sbjct: 46 SAPCLE--------IAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 97 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238 +P + T A +K +G+ + + LE + +I G E Sbjct: 98 LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 150 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ P TQE + + G ++LNV +AAA++++ Sbjct: 151 GITPATQEILDHLIQITQYGSTRSLNVGHAAAISMW 186 >gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 126 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLE 221 T YSP + +SA G+L ++P I + D L + H+ L + +K Sbjct: 12 TADIYSPK----VVRSAMGSLFNLPIITKISEQDLLSFCQNHNLTLYATALDNSAKASWN 67 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D A+ILG E G+ + + ++ M G ++LNV+NA ++ +Y Sbjct: 68 ISYPQD-CAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMY 119 >gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 189 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 32/172 (18%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTK----------RYSPSES 173 + R L+ V+++ ++ NIGAI+R+ A I+T + R P + Sbjct: 18 IKEFRCKNLIAVIENPDNIKNIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLN 77 Query: 174 AV-----------LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 A+ + K + ++H+ + + H G++ + L Sbjct: 78 AISVSDIKWSFVKIFKDTNSCMDHLEK---ESFVSVITSPHIKGYKNVVLHK------HD 128 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K K+A+ G EG G+ + ++ ++ M GII++LN+ ++ + LY Sbjct: 129 YTKYKKLAVWFGNEGVGISKTAVKRSSFCINIPMYGIIESLNLGTSSGIVLY 180 >gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL YB-4239] gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL YB-4239] Length = 934 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189 S L++V V+ P N+G I R + G++T ++ A A + +P Sbjct: 782 SDLIVVASLVDKPPNLGGICRLSDVLGV-GLLTIHDMEVAKHPQFKNVAVTADQWMPMHE 840 Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQET 247 ++ + + L + G+ IGL +D L + ++ K +LIL G E +G+ + Sbjct: 841 VKPEEIKNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILLGKEKEGIPGELLAE 900 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + GII+++N+ AAA+ ++ Sbjct: 901 LDFCVEIKQVGIIRSMNIQTAAAIIVH 927 >gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 250 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 H L P D + S L ++LD V DP N+G I+R A F + I + + Sbjct: 79 HPQQVLGVFPFFQTGNDTIDISALTLMLDGVQDPGNLGTIIRIADWFGINDIFCSHETAD 138 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + ++ G++ + +S L L+++ + G + ++++ + + Sbjct: 139 LYNPKVVQATMGSITRVRLHYVS-LVSVLKQLPE-DYPIYGTLLEGNNIYDEQLSTNGL- 195 Query: 231 LILGAEGKGLRPKTQE 246 +I+G EG G+ + ++ Sbjct: 196 IIMGNEGNGISTEIRQ 211 >gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] Length = 263 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVND--PHNIGAILRSAVAFSCDGIITTKRYSP 170 GL L P P L+A+ VL VN P N+GAILRSA A ++ Sbjct: 94 GLVLVARPSF-PRLEALDPPPHAPVLVAVNPEKPGNLGAILRSADAAGAGAVVAVGGVDL 152 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 V+ +S++G + +P S+ AL + + G + + S ++ + +A Sbjct: 153 MNPNVI-RSSTGVVFTLPTAAASS-EAALDWVRARGRRLVAASPHAETSYWEVDLTGAVA 210 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +G E GL P+ E A + M G +LNVS +AA+ LY Sbjct: 211 IAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLY 254 >gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] Length = 161 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + D Q W T G ++P ++ + AL+ G E +GL + ET S Sbjct: 63 LEHFLDKTQPRQLWACSTRG-----QQPYDKANFHPGDALLFGPETRGLPRELLETLLSR 117 Query: 252 AHLHMP--GIIKALNVSNAAAVALY--ITQNHFAK 282 L +P ++LN+SNA AV LY Q FAK Sbjct: 118 QVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFAK 152 >gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus] Length = 363 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185 R +V ++ +P+N+ A LR+ +F GI I + + S+ A L K+ A+ Sbjct: 150 RTRSATLVFENPANPNNVWACLRTLDSF---GIQHAHIVSDPSTYSKQARL-KTMCTAMG 205 Query: 186 HIPYIRI---SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + DA+ K+ + G+Q + S S P+ + + A++LG E +G+ Sbjct: 206 SQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGIS 265 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ A + + M G +++ N+S A ++ L Sbjct: 266 DSMRDMADATFVIPMRGFVRSFNMSVACSIIL 297 >gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly] gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1] gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly] gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1] Length = 218 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 9/149 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186 R + L +VL+ + N A +R+ + S II T +Y+ + VL S + Sbjct: 31 RTNYLTLVLEDIFQSQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKWIGINK 90 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 +++ A + + + G++ + S D++ LE + K+A+ G E GL Sbjct: 91 YKCVKV-----AFEHLKANGYKIVATSLDNEAISLEDFPIDTKMAVFFGTELTGLSHTIL 145 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + M G ++ N+S A A+ Y Sbjct: 146 QNADLHLKIPMYGFTQSYNLSVAVAIVFY 174 >gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 260 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 9/154 (5%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 QL + LD V DP N+G I+R A F + I + + + ++ GA+ + + Sbjct: 108 EQLCLGLDGVQDPGNLGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARV-CVH 166 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +LTD L+ ++ G D E+ + + +++G EGKG+ +++ A+ + Sbjct: 167 YLSLTDLLRTANA-DIPVYGTFLDGNDMYGTELSPNGL-IVMGNEGKGI---SRDVASLI 221 Query: 252 AH-LHMPGIIKALNVSNA--AAVALYITQNHFAK 282 L++P N S + AVA I F + Sbjct: 222 NRKLYIPNYPPERNTSESLNVAVATAIVCAEFRR 255 >gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] Length = 237 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%) Query: 146 NIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRI---SNLTDALQK 201 N+G I+R F D +I K + P V +A+GA+ +I ++ NL DAL+ Sbjct: 14 NLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAI-YIDSGKVKIYENLDDALRG 72 Query: 202 MHSWGFQTIGLSSDS----KKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSM 251 + G + + D +K +E E K IA++ G E GL + + Sbjct: 73 IGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSSIAVVFGRESVGLTREEISKCDFL 132 Query: 252 AHLHMPGIIKALNVSNAAAVALYI 275 H+ LN+S+A A+ LY+ Sbjct: 133 VHIASNPEYPVLNLSHAVAITLYM 156 >gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis L2-32] gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis L2-32] Length = 304 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E ++ ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 238 PMETYHFPERCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 293 >gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 178 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VLD+V N+GA R+ AF+ + I+ + S + K+A GA +P+ + Sbjct: 25 VTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTALGAEMTVPWSYCA 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGL 240 + + ++ + G+ + + + K AL+ G E G+ Sbjct: 85 STVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAPGVKYALVFGNEVDGV 134 >gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138] gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata] Length = 1420 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 19/157 (12%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITT-----KRYSPSESAVLAKS 179 ++ S+L++V V+ P N+G I R CD G++T K + ++ + Sbjct: 1265 IKRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDLRVKNHPQFKNVAVTAD 1319 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEG 237 +E +P IS +K G+ IGL +D L+ K K ++LG E Sbjct: 1320 KWMPMEEVPIDEISKFMKEKKKE---GYTLIGLEQTDKSIKLDNNFKFPSKSLILLGTEA 1376 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + G+I+++N+ A AV ++ Sbjct: 1377 HGIPGHLLNELDLCLEIKQHGVIRSMNIQTATAVIVH 1413 >gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM 20093] gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM 20093] Length = 273 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PLE+ ++ ++ GAEG GL K + A + ++ G ++++N AAAV+++ Sbjct: 204 PLERYEFPERCLMLFGAEGPGLSSKALDLADDVVYISQFGSVRSINAGAAAAVSMH 259 >gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546] gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546] Length = 244 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P+++ + L++ LD V+DP N+G I+R A + I+ + Y+P K+ Sbjct: 92 PSVEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + + +S L D + G + + E I L++G+E G Sbjct: 145 ISATMGSFGRVTVSQL-DLPAYLEQANLPVYGAFLEGESVHRTEFSAQGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + + T + G ++LNV+ A + L Sbjct: 203 VREQAAKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735] gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735] Length = 250 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 70 QLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPT 125 +LLA A +A +W AN P P V T D++ + H L P + Sbjct: 35 ELLAMSRAHTLVATQEWLANHSAP-PADEVIEVTSDELRKVSLLQHPQQVLGLFPFFASD 93 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 A+ S L ++LD + DP N+G I+R A F + I ++ + + + ++ G++ Sbjct: 94 THAINTSTLSLMLDGIQDPGNLGTIIRIADWFGINDIYCSQETADMYNPKVIQATMGSIT 153 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + L L+++ + F G + +++ + +I+G EG G+ + + Sbjct: 154 RV-RLHYGALEPMLRQLPA-DFPIYGTLLEGNDIYSEQLSAHGL-IIMGNEGNGISAQVR 210 Query: 246 E 246 + Sbjct: 211 Q 211 >gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 222 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179 L+P + + L + ++++ NIG+I+R+A I+ +R++ + V + Sbjct: 63 LNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 122 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238 +P + T A +K +G+ + + LE + +I G E Sbjct: 123 LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 175 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ P TQE + + G ++LNV +AAA++++ Sbjct: 176 GITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMW 211 >gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2] gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 16/159 (10%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ Q+ +VL P NIG++ R+ + F G +P + + AL +P Sbjct: 1 MKKQQITVVLVEPQGPLNIGSVCRAMMNF---GFSQLCLVNPCTTFNNLDARKMALSALP 57 Query: 189 YIR----ISNLTDALQKMH-SWG-------FQTIGLS-SDSKKPLEQEIKNDKIALILGA 235 + + L AL+ H ++G ++ LS D + L +E ++ AL++G Sbjct: 58 ILEKAVVVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQCALVMGR 117 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL E + ++N+S+A A+ LY Sbjct: 118 EDHGLYTSELELCQRFVTIPTENAYGSMNLSHATALLLY 156 >gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa] gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa] Length = 1224 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 6/155 (3%) Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 T++ +R S Q ++V ++ N+ + R+ F G+ + S + Sbjct: 1062 TMEKIRASRQQFILVASLLDRIPNLAGLARTCEVFKVSGLAIADASILRDKQFQLISVT- 1120 Query: 183 ALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239 A + +P I + +++ L+K GF +GL + PL+ K L+LG E +G Sbjct: 1121 AEKWVPIIEVPVNSVKHFLEKKKRDGFSILGLEQTANSVPLDHHAFPKKTVLVLGREKEG 1180 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G++++LNV + A+AL+ Sbjct: 1181 IPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALW 1215 >gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 222 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179 L+P + + L + ++++ NIG+I+R+A I+ +R++ + V + Sbjct: 63 LNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 122 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238 +P + T A +K +G+ + + LE + +I G E Sbjct: 123 LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 175 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ P TQE + + G ++LNV +AAA++++ Sbjct: 176 GITPATQEILDRLIQITQYGSTRSLNVGHAAAISMW 211 >gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 388 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 50/223 (22%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV ++ QTI + +A G+ L+ P P++ R + ++M+ +++P N Sbjct: 166 PVVSIADQTIQTTLQTKA---GIDLDNLHPQNGP---PSMQNQRPASVMMIASLIDNPTN 219 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG----ALEHIPYIRI-SNLTDALQK 201 +G + R + +F + + + A S A+ + + + + L DA K Sbjct: 220 LGGLSRISESFGLEALYIDNLKKAAHKDFKATSVRSEKHLAIRELKEVGVPAFLLDAKSK 279 Query: 202 MHSWGFQTIGL-------------SSDSKKPL---------------EQEIKN--DKIAL 231 G++ +G+ SSD K+ L Q+I K L Sbjct: 280 ----GYEVVGIEQTDRSGILGHEDSSDQKEILTGDKSAGGQSTHVIRSQDIGTLPKKCCL 335 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +LG+E +G+ + + G+ ++LNV A +ALY Sbjct: 336 VLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALY 378 >gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] Length = 242 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A ET+ S T QL++ LD V DP N+G I+R A F D I + + + Sbjct: 75 ADETSKDYSRTFHEHIEGQLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNP 134 Query: 175 VLAKSASGALEHI 187 + ++ G++ + Sbjct: 135 KVVQATMGSIARV 147 >gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 268 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +VLD V D N+G+ILRSA A + + + + S + ++ GA Sbjct: 118 RVEATCVVLDGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLRAGMGAQF---L 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R+ +A + S + L + +A + G EG G+ + + + Sbjct: 175 LRVHEQVEAADLLARLAVPVFVTDSHDAQALYDVDLSGPLAWVFGNEGAGVSAEWRAAVS 234 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + PG +++LNV+ AAAV + Sbjct: 235 RRVTIPQPGGMESLNVAAAAAVCFF 259 >gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM 70294] gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM 70294] Length = 1430 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 19/158 (12%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITT-----KRYSPSESAVLAK 178 +V S L++V V+ P N+G I R CD G++T K + ++ + Sbjct: 1274 SVTRSDLIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIRVKNHPQFKNVAVTA 1328 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAE 236 +E +P I + + ++ G+ IGL +D L + K +LIL G E Sbjct: 1329 DRWMPMEEVP---IDGIIEFMRAKKKEGYTLIGLEQTDKSIQLNNKYTFPKKSLILLGTE 1385 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + G+I+++N+ A AV +Y Sbjct: 1386 AHGIPGHLLSELDLCLEIEQHGVIRSMNIQTATAVIVY 1423 >gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822] gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis] Length = 274 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 62/256 (24%) Query: 48 NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQ-- 99 + L GVH A L P + +F + ARLD HP VPPQ Sbjct: 45 RILLDGVHLCQAWLAHQGTPLQALFDV-------ARLD------HPEIRALAGQVPPQHC 91 Query: 100 -TIDK--IVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +D + G +V G +A P L +D + ++ D + DP N+G +L Sbjct: 92 LALDSRLLQGLASVESGQGVVFVARAPEPALPERID-----ENCVLFDRIQDPGNVGTLL 146 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEH------IPYIRISNLTDAL 199 R+ A ++ + + S + +S GA EH +P + + + L Sbjct: 147 RTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTL 206 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG 258 + G D+ P + A + G EG+G+ A H+ H Sbjct: 207 ARS--------GSLYDTDLPA-------RCAWVFGHEGQGVAEALLRAAALRVHIPHESA 251 Query: 259 IIKALNVSNAAAVALY 274 +++LNV AAA+ L+ Sbjct: 252 AVESLNVGAAAAICLF 267 >gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 33/190 (17%) Query: 103 KIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++V V GL+ L PL LD VR +VL H + P NIG R+ D Sbjct: 3 RVVISNGVFNGLSGLNVNPL--HLLDKVR-----IVLSHTSHPGNIGGAARAMKTMGLDS 55 Query: 162 I-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 + + R+ P + A + A+GAL+ + + + D L + S +++ ++ L Sbjct: 56 LYLVNPRFFPDKEA--ERRATGALD---ILHKAKVCDTLDEALSGTVLAAAVTA-RQRDL 109 Query: 221 EQEI--------------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALN 264 E+ + D +AL+ G E GL T E + +H+P +LN Sbjct: 110 SHEVFDGRQGATKLLDLAQKDFVALVFGTEMSGL--TTLEVSKCQIIIHIPANPEYSSLN 167 Query: 265 VSNAAAVALY 274 +++A V Y Sbjct: 168 LASAVQVMAY 177 >gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 70 Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G+EG+G+ T+ + + M G + +LN SNAAA+ Y Sbjct: 16 LVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAY 61 >gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 156 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+ G E +GL +TA + + + G +++LN++NAA+V LY Sbjct: 100 ALVFGTESRGLPESLLDTAGARLRIPIWGQVRSLNLANAASVVLY 144 >gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] Length = 162 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G I R V + + I +K S + ++ EH+ I+ N L+ + Sbjct: 22 PANTGNIGRLCVGLNIELHIVSKPSFIISSKEVRRAGLDYWEHLVLIKHENENTFLEYCN 81 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKA 262 + + I ++ K ++ ++ L+ G E GLR E + ++ M I++ Sbjct: 82 NNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLRESLWENDLDNSIYIPMSDNIRS 141 Query: 263 LNVSNAAAVALYITQNHFA 281 +N+SN AA+ Y H Sbjct: 142 INLSNTAAITAYEAYRHIC 160 >gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus DSM 14838] gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus DSM 14838] Length = 253 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 22/156 (14%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSP-SESAVLAKSASG 182 +V + L + LD V DP N+G I+R A F + I T Y+P + A + A Sbjct: 98 SVISHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARV 157 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L + P L D +Q + G D + Q++ ++ + +++G EG G+ Sbjct: 158 KLHYTP------LPDLIQSLKD--IPVYGTFLDGENMYTQKLSSNGL-IVMGNEGNGIGK 208 Query: 243 KTQETATSMAHLHMPG------IIKALNVSNAAAVA 272 + ++ L++P ++LNV+ A AV Sbjct: 209 EVEQLINR--KLYIPNYPAERETSESLNVAIATAVV 242 >gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2] Length = 156 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII--KAL 263 G + +++ +P Q D L+ G E +GL + ++ + L +P + ++L Sbjct: 72 GQRLFAMTTKGSRPHSQACFQDGDVLLFGPETRGLPEQILDSLPATQRLRLPMVAESRSL 131 Query: 264 NVSNAAAVALY 274 N+SNA AV LY Sbjct: 132 NLSNAVAVTLY 142 >gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 265 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 5/150 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189 S + +V + DP N+G ILR+ A G+I S +++ GAL + I Sbjct: 115 SDIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQ 174 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R L++ + IG S + ++ L++G E +GL + Sbjct: 175 ARWGEFMHWLREGPG---ELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G +LN + A AV Y N Sbjct: 232 LLVKMPMLGKADSLNAAVACAVMAYELLNQ 261 >gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 257 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190 +L + LD + DP N+G I+R A F + I + + + +++ G+L H I Y Sbjct: 104 RLYLALDGIQDPGNLGTIIRIADWFGIEHIYCSIDTADIYNPKTVQASMGSLAHIGISYT 163 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGL 240 I L D+L + G D K +I N+ + LI+G EG G+ Sbjct: 164 DIPLLIDSLPT----DYPIYGTLLDGK-----DIYNEPLTPHGLLIMGNEGNGI 208 >gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica] Length = 1335 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186 L++ ++ +N+G I R+A F + I+ +K Y+ LA +A ++ Sbjct: 1186 LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 1239 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 I ++ NL L M G+ GL + +E+ K ++LG E +G+ Sbjct: 1240 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 1299 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + GII++LNV +AA++++ Sbjct: 1300 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 1328 >gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 242 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 14/150 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 89 RRHSLHIAIENFENDGNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRH--- 145 Query: 190 IRISNLTDALQKMHSWGFQ---TIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKT 244 +++ K+ +W + T+ ++ PLE ++ L+ G EG G+ Sbjct: 146 ------HESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERALLLFGQEGPGVSAAA 199 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ A + G +++N AA +A++ Sbjct: 200 QDAALMTCSIAQFGSTRSINAGVAAGIAMH 229 >gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 265 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 1/148 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + + +V + DP N+G ILR+ A G+I S +++ GAL P I Sbjct: 115 ADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQP-IT 173 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + + + IG S + ++ L++G E +GL + + Sbjct: 174 QARWGEFMHWLRQGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLL 233 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G +LN + A AV Y N Sbjct: 234 VKMPMLGKADSLNAAVACAVMAYELLNQ 261 >gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 251 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A + R + + + H P I D + Sbjct: 114 NIGTVVRTANAMLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIE-----DFVAWAQGE 168 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + IG+ DS PLE K L+ G EG GL + A + G +++ Sbjct: 169 GLEIIGIDIFPDSV-PLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSM 227 Query: 264 NVSNAAAVALY 274 N + AA +A++ Sbjct: 228 NAATAAGIAMH 238 >gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis] gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis] Length = 1744 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 104 IVGKEAVHQGLALETAPLLSP--------TLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153 I+G A Q L +E L T++ +R S+ L++V ++ N+ + R+ Sbjct: 1553 ILGSNAYKQLLEMEKEDELLDQSLQSRILTMERIRASRQHLILVASFLDRVPNLAGLART 1612 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIG 211 F G+ + + S + A + +P I + +++ L+K G+ +G Sbjct: 1613 CEVFRASGLAIADKSILHDKQFQLISVT-AEKWVPIIEVPVNSVKQFLEKKKQEGYSILG 1671 Query: 212 LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L + L+Q K L+LG E +G+ + + G++++LNV + A Sbjct: 1672 LEQTANSVSLDQFAFPKKTVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGA 1731 Query: 271 VALY 274 +AL+ Sbjct: 1732 IALW 1735 >gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 229 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL V DP N+G ++R+A A ++ T + + +S +G+L HI + Sbjct: 85 VLSEVRDPGNLGTVIRAADAAGAAFVVVTDASVDVTNPKVVRSTAGSLHHIDVVTGIAFP 144 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D L+ + + + L + + + G E +GL + + + Sbjct: 145 D-LRAATGGTVRLVAADGYASTQLPEADLDGPHLWVFGNEARGLPDDQVAACDAAVAVPL 203 Query: 257 PGIIKALNVSNAAAVALY 274 G ++LN+ AAAV LY Sbjct: 204 HGRAESLNLGTAAAVCLY 221 >gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS] Length = 257 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 62/256 (24%) Query: 48 NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQ-- 99 + L GVH A L P + +F + ARLD HP VPPQ Sbjct: 28 RILLDGVHLCQAWLAHQGTPLQALFDV-------ARLD------HPEIRALAGQVPPQHC 74 Query: 100 -TIDK--IVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +D + G +V G +A P L +D + ++ D + DP N+G +L Sbjct: 75 LALDSRLLQGLASVESGQGVVFVARAPEPALPERID-----ENCVLFDRIQDPGNVGTLL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEH------IPYIRISNLTDAL 199 R+ A ++ + + S + +S GA EH +P + + + L Sbjct: 130 RTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTL 189 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG 258 + G D+ P + A + G EG+G+ A H+ H Sbjct: 190 ARS--------GSLYDTDLPA-------RCAWVFGHEGQGVAEALLRAAALRVHIPHESA 234 Query: 259 IIKALNVSNAAAVALY 274 +++LNV AAA+ L+ Sbjct: 235 AVESLNVGAAAAICLF 250 >gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406] gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406] Length = 249 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + ++ LD++NDP N+G I+R A + II ++ + + + ++ G+ + + Sbjct: 104 GEWVIALDNINDPGNLGTIIRIADWYGISKIICSEDTADFYNPKVINASKGSFLRVK-VH 162 Query: 192 ISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++L+ L Q++ +G G + + E I L++G E G+ + T Sbjct: 163 YTDLSAFLKQQRVSVYGADLHGENIHTASFKEVGI------LVMGNEAHGISEGVKACIT 216 Query: 250 SMAHLHMPGIIKALNVSNAAAVA 272 M + G ++LNV A A+ Sbjct: 217 QMLTIPRFGQAESLNVGIATAIC 239 >gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] Length = 230 Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 13/149 (8%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P NIG I R F + ++ ES + A A L+ +++ NL Sbjct: 4 VVLVELKIPENIGFIARVMKNFGFEKLVLYNCNVSKESYITAAHAKDVLDKA--VKVENL 61 Query: 196 TDALQK----MHSWGFQTIGLSSDSKKP------LEQEIKNDKIALILGAEGKGLRPKTQ 245 + L++ + + G ++ + ++P L + IK + A++ G E GL + Sbjct: 62 KEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMIKGET-AILFGREDYGLYDEEL 120 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +NVS+AAAV LY Sbjct: 121 KLCNVIVSVPTSEEYPVMNVSHAAAVILY 149 >gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis] Length = 542 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 46/182 (25%) Query: 135 LMVLDHVNDPHNIGAILRSAVAF---------SCDGIITTKRYSPSESAV----LAKSAS 181 ++ LD V DP N+G +LR+A+A C K S AV LA+ + Sbjct: 349 VLALDGVQDPGNLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKLPLAQYSL 408 Query: 182 GALEH-------IPYIRI--------------------SNLTDALQKMHSWGFQTIGLSS 214 G + +P S A Q+ H Q Sbjct: 409 GQWQQLVEEQRLVPLAADPSRAAAAAAADARGTAGRDGSGSAAARQQQHG---QAAAPEG 465 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVA 272 D L+Q + + L LGAEG+GL +E +++ G ++++LNVS A A+ Sbjct: 466 DVGA-LQQRLAQLPVCLCLGAEGQGLSAGVRERCVAVSIPQSGGGELMESLNVSAAGAIL 524 Query: 273 LY 274 ++ Sbjct: 525 MF 526 >gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1] gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris DX-1] Length = 151 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G LR + + I P+ +S L+ + +R D+ K Sbjct: 11 PQNTGTTLRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVR----HDSWLKFE 66 Query: 204 SW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 W G + I L++ ++P ++ L+LG E G+ A + + M Sbjct: 67 QWRENAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPG 126 Query: 260 IKALNVSNAAAVA 272 +++LNV+ AAA+ Sbjct: 127 LRSLNVAMAAAMV 139 >gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] Length = 151 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LG E GL + E+ + + + G +++LN++NAA+V LY Sbjct: 95 ALVLGPEATGLPMRIIESIPQLVRIPIWGQVRSLNLANAASVLLY 139 >gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis] Length = 740 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S L+++ V+ NI I R+ F + ++ + + + + + A + +P Sbjct: 583 SGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSK-KVMNDPIFRQISVTAEKWLPINE 641 Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETA 248 + + + + +QK G++ GL S +E +K LILG E +G+ + Sbjct: 642 LEPTKIKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEIVSIV 701 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + GII++LNV +A++ +Y F + Sbjct: 702 DQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQ 735 >gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] Length = 276 Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHS 204 NIG+I+R+A AF+ G+ + + L ++++ Y I A++ + Sbjct: 139 NIGSIVRTANAFTARGVHIIGPHKWNRKGSLMTELYQSVDY--YASIDEFVHAVRTRDQE 196 Query: 205 WGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G T ++ D P+E ++ L+ GAEG GL + E A + ++ G ++ Sbjct: 197 SGQHTRLIALDIVPGAVPIESYQFPEQCILLFGAEGPGLTSRALEIADDVVYITQYGSVR 256 Query: 262 ALN 264 +LN Sbjct: 257 SLN 259 >gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii] gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] Length = 316 Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R +L +++ + D N+ A+ R+A A G + + + + ++A+GA + + Sbjct: 86 AKRTFTVLPIVEGLYDMGNLAAVCRTADALGY-GAVHAVNKADGKFKMSQRTAAGADKWL 144 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246 + + L M + G+Q + QE+ + A++LG E G+ + Sbjct: 145 DVKAWDSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVVLGNEKFGVSAEAVA 204 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + A + M G++++ N+S A A+ LY Q Sbjct: 205 AADACAIIPMTGMVESFNISVANALILYEAQQQ 237 >gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 213 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPS------ESAVLAKSAS 181 R L+ V+++ ND NIG I+R+ A + I+ K+ P E L+K++ Sbjct: 22 RCKNLIAVIENPNDIKNIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKRALSKTSV 81 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------KIALILG 234 A++ R + + + F +I ++S K + + ++ K+A+ G Sbjct: 82 SAIKWSFVKRFDSTAACIDHLEQNRFVSI-VTSPHLKGRKNAVLDEADYTIYTKLAVWFG 140 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E G+ E + + M G+I++LN+ + + LY Sbjct: 141 NESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLY 180 >gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407] Length = 719 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 115/290 (39%), Gaps = 73/290 (25%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-------TKNALARLDWDA----------NLPHPFP 92 FLYG V AAL + R++++L +++ R D ++ H Sbjct: 385 FLYGRSVVEAALRSDRRQLYRLYVHRAAAEYGRHSRGRQQDDGIERLAVARGLSIQH--- 441 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDH-------VN 142 V + +DK+ K H G LE +PL P + A+ R + L H VN Sbjct: 442 VDARGQRLMDKMS-KGRPHNGYVLEASPLRQPPVVALGRWREHGFDVELGHQSREDAAVN 500 Query: 143 D------------------------------PHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P N+GAILR+A + ++R S Sbjct: 501 GTDTFVQIARPGSNTTAGRHPLVLLLDQVLDPGNLGAILRTASFLGVSAVAVSQRSSAGL 560 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIA 230 ++V K+++GA E + + + + + + G++ + LE +D + Sbjct: 561 TSVALKASAGAAEAMALLSVEDAASFVTRSRDAGWRVYAAVIPGSRTADLEDVETDDPLG 620 Query: 231 -----LILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAV 271 L++G+EG+GL P+T A ++A+ ++ +LNVS AA + Sbjct: 621 RQACLLVVGSEGEGL-PRTVRRAADVEVAIANRSGSDVVDSLNVSVAAGL 669 >gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6] gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6] Length = 244 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 92 PAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + I L++G+E G Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEQANLPIYGAFLEGESVHKTTFSAQGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + + T + G ++LNV+ A + L Sbjct: 203 VREQASKLVTDKITIPTFGGAESLNVAMATGIIL 236 >gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica] Length = 643 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186 L++ ++ +N+G I R+A F + I+ +K Y+ LA +A ++ Sbjct: 494 LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 547 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 I ++ NL L M G+ GL + +E+ K ++LG E +G+ Sbjct: 548 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 607 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + GII++LNV +AA++++ Sbjct: 608 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 636 >gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501] gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501] Length = 217 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKS-ASGALE 185 A R + + L V HN A++RS F D + +R+ L K+ A GA Sbjct: 26 ANRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFGNR----LDKNIAMGAQR 81 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244 + R + + + G++ + S + + D +A+ G E +GL Sbjct: 82 WVDIHRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGL 141 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LNVS AAA+ L Sbjct: 142 IRQADAAIQIPMVGFTESLNVSVAAAIVL 170 >gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM 16992] gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM 16992] Length = 227 Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 161 PMETYCFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 216 >gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] Length = 256 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P NIG R+ C ++ + L + + A + +R++ Sbjct: 5 LRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRVT 64 Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKK----PLE-------QEIKNDKIALILGAEGKGLR 241 L AL H F T + +K P+E + +K ++AL+ G+E KGL Sbjct: 65 HGLAAALADAHVV-FGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLE 123 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + + +LN++ A V LY Sbjct: 124 NEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLY 156 >gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa HTCC2155] gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa HTCC2155] Length = 166 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 6/130 (4%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+ I+R A C G+ ++ + + V +K A E + + ++L L+K+ Sbjct: 33 NLSTIMRMA---GCSGV--SQVIATGNAKVNSKIARDGAEQVNLVTKNSLPPVLKKLKQD 87 Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ +GL + + L K L++GAE +GL + + + G+ + N Sbjct: 88 GYTLVGLEQTTNSNNLHDFDFPHKCVLVVGAEREGLSQDCLDCLDYTVEIPVWGLPYSYN 147 Query: 265 VSNAAAVALY 274 V++A ++A+Y Sbjct: 148 VASATSLAVY 157 >gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 239 Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + HN+G+ILR+ AF + +K ++K+A G + I + R ++ Sbjct: 99 LYLDQIRSAHNVGSILRTVEAFQLGDVYFSKDTPLPTHPQVSKTAMGCSKEICFQRHASP 158 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++ + + + + G+ P+++ L +G E GL + A ++ + Sbjct: 159 SELPRPLIALETSSDGI------PIDKYTFPSSGCLAVGNEEYGLSDEVLSQADAVVEIP 212 Query: 256 MPGIIKALNV 265 + G +LNV Sbjct: 213 LYGKKNSLNV 222 >gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 247 Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E ++ L+ GAEG GL K A + ++ G +++LN AAAV+++ Sbjct: 185 PIETYRFPERCVLLFGAEGPGLTRKALGIADDVVYITQYGSVRSLNAGAAAAVSMH 240 >gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 253 Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A + R + + + H P I D + Sbjct: 116 NIGTVVRTANAMLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIE-----DFVAWAQGE 170 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + IG+ DS PLE K L+ G EG GL + A + G +++ Sbjct: 171 GLEIIGIDIFPDSV-PLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSM 229 Query: 264 NVSNAAAVALY 274 N + AA +A++ Sbjct: 230 NAATAAGIAMH 240 >gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 238 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +TI K+ KE V E S T+DA + SQ+++V + ++ N+G ILR+AV F Sbjct: 64 KTIAKVSDKENVFVVGVFEK---YSCTVDATK-SQIVLV--NPSNMGNLGTILRTAVGF- 116 Query: 159 CDGIITTKRYSPSESAV---LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GI P + +S+ GAL + + + ++ ++ + T L + Sbjct: 117 --GIHDVSFIEPGADVFNPKVVRSSMGALFRLRHQYFESFSEYQKQNPNHEIFTFML--N 172 Query: 216 SKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KKPL K +L+ G E GL TS+ + + +LN++ A + Sbjct: 173 GKKPLTINDCPKPKLFSLVFGNEATGLDDSYLSVGTSII-IPQSEEVDSLNLTIAVGIGT 231 Query: 274 YI-TQNH 279 Y+ TQN+ Sbjct: 232 YLFTQNN 238 >gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 607 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V DP +G +LR+A + D II T + + ++A GA Sbjct: 228 VLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGA 276 >gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] Length = 268 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 211 RCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257 >gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 281 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 117/281 (41%), Gaps = 32/281 (11%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K++ ++L+R R +++ Q+SRH + G V L S L T+ Sbjct: 6 KEATRSQLQRAQRLHRR----EQRSRHG----QTLVEGPQAVRELLACASGLARDLYVTE 57 Query: 76 NALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 A+ R A L V T + Q + + A QG+ + +P L+++ Sbjct: 58 EAIERHGDVAELASAAGVWTHVLAAQDMRDL---SADAQGVVAVISTPEAPGLNSLLGEA 114 Query: 134 LLMV--LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L+V LD + DP N+G I+R+A A D + K + S + +SA+G+ H+P + Sbjct: 115 SLVVATLD-IADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVMRSAAGSHFHVPCVA 173 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA--EGKGLRPKT----Q 245 ++ + G Q + + L I+ A ILGA G LR +T Sbjct: 174 GVEASELAARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAPSGPDLRRRTLWFVG 233 Query: 246 ETATSM--------AHLHMP--GIIKALNVSNAAAVALYIT 276 A A + +P G ++LNVS A AV Y + Sbjct: 234 NEARGFAGCDFDVDARVAVPLYGKAESLNVSTALAVCAYAS 274 >gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 268 Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 211 RCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257 >gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum] gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 607 Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD+V DP +G +LR+A + D II T + + ++A GA Sbjct: 228 VLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGA 276 >gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297] gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297] Length = 254 Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 132 SQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q +VL H + NIG+ R+ + F ++ K + ++ +A A+ LE Sbjct: 12 AQTKVVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKTFPSDDAIAMASGATDILEQ--A 69 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK---PL-------EQEI---KNDKIALILGAE 236 + + L +A+ GF +G S+ S+ PL EQ + N ++AL+LG E Sbjct: 70 VVVETLEEAVADC---GF-VVGASARSRNLPWPLVHPRQMAEQALALPDNTRVALVLGRE 125 Query: 237 GKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274 GL E A H+++P +LNV+ A V Y Sbjct: 126 RSGL--TNDELARCHCHVNIPANPDYSSLNVAAAVQVLCY 163 >gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex] Length = 177 Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust. Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L+++ V+ N+G + R+ D ++++ R + + V ++ ++ I+ Sbjct: 22 LIVIASLVDRVPNLGGLCRTCEVLGVRDFVLSSLRVTEEKDFVSLSVSAEKWINVLEIKP 81 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 L + ++++ G+ +G + S +PL K ALILG E +G+ + + Sbjct: 82 FQLVEYVKQLKLEGYTVVGAEQTASSQPLNHFTFPKKSALILGHEKEGIPVELIQHLDVC 141 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + GII+++NV A+ ++ Sbjct: 142 VEVPQEGIIRSMNVHVTGAIFIW 164 >gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 244 Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P ++ + L++ LD V+DP N+G I+R A + II + Y+P K+ Sbjct: 92 PAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + +++S L D + G + + + I L++G+E G Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEQANLPIYGAFLEGESVHKTTFSAQGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + + T + G ++LNV+ A + L Sbjct: 203 VREQASKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|15811191|gb|AAL08856.1|AF308680_1 unknown [Ehrlichia ruminantium] Length = 99 Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG H AAL N +RK +LL T+ N + ++ + + +P K V TI+ + Sbjct: 1 IYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNINTINSV 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV 129 + + HQG+AL+ + + + +++ V Sbjct: 60 LPPNSNHQGIALQVSIVDTVSIEDV 84 >gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54] Length = 262 Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D + DP N+G +LR+ A + + + S + +S GA H + I Sbjct: 114 VLFDRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRSGQGA--HF-ALAIHEH 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254 D + + G + + + + L + A + G EG+G+ + A + Sbjct: 171 VDLSALLPTLGVPLVATALEGAQDLYAGRLPARCAWVFGHEGQGVAAELLAAARLKLRIP 230 Query: 255 HMPGIIKALNVSNAAAVALY 274 H +++LNV AAA+ L+ Sbjct: 231 HDMAAVESLNVGAAAAICLF 250 >gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501] gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501] Length = 241 Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 28/237 (11%) Query: 48 NLFLY-GVHTV----SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 LFL G H V AAL NP + +L T A W + PF + + + Sbjct: 19 GLFLVEGEHLVLELQKAALLNPLLQGSELYVTN---AYEQWQS----PFKTHLISDRQMA 71 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS---C 159 +I + +AL P+ + A + + L + DP N+G ILR+ F C Sbjct: 72 QIADTKTPQGIVAL--VPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRC 129 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +++ P V+ +S+ GA+ H P L AL + + F I +P Sbjct: 130 --LLSPGSVDPYNPKVV-RSSMGAIFHAPM----ELDVALDSLRT-RFARIACLDMQGEP 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALY 274 ++ + G E +G+ P+ Q A +PG I++LN++ + Y Sbjct: 182 VQSTAFTTFECYLFGNEARGV-PRDQLNALGARPFTIPGCGAIESLNLAATVNMCAY 237 >gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 14/144 (9%) Query: 136 MVLDHVNDPHNIGAILRSAVAFS---CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L + DP N+G ILR+ F C +++ P V+ +S+ GA+ H P + + Sbjct: 103 IYLHEIQDPGNLGTILRTLAWFGNFRC--LLSPGSVDPYNPKVV-RSSMGAIFHAP-LEL 158 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D+L+ F I +P++ + G E +G+ P+ Q A Sbjct: 159 DVALDSLRTR----FARIACLDMQGEPVQSTAFTTFECYLFGNEARGV-PRDQLNALGAR 213 Query: 253 HLHMPGI--IKALNVSNAAAVALY 274 +PG I++LN++ + Y Sbjct: 214 PFTIPGCGAIESLNLAATVNMCAY 237 >gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326] gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326] Length = 244 Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179 P+++ + L++ LD V+DP N+G I+R A + I+ + Y+P K+ Sbjct: 92 PSVEIPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNP-------KT 144 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 S + + +S L D + + G + + + + + I L++G+E G Sbjct: 145 ISATMGSFGRVTVSQL-DLPRYLEQSNLPVYGAFLEGESVHKTDFAAEGI-LLMGSESHG 202 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +R + T + G ++LNV+ A + L Sbjct: 203 IREHAAKFVTDKITIPAFGGAESLNVAMATGIIL 236 >gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 224 Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A AF + R + + + H P + D + Sbjct: 88 NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVAWAQGE 142 Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G IG+ DS PLE L+ G EG GL P+ E A + G +++ Sbjct: 143 GLAIIGIDIFPDSV-PLETYDLPKNCVLVFGQEGPGLTPEVHEAAVDTLSIEQFGSTRSI 201 Query: 264 N 264 N Sbjct: 202 N 202 >gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin] gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 569 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 37/78 (47%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G + A+ T P+ + + ++VLD++ DP +G +LR+A + D II T Sbjct: 161 GSDGYVGDFAIPTPPMKEKLIANHQRLNRVLVLDNIEDPGVLGTLLRTASGYQYDAIIAT 220 Query: 166 KRYSPSESAVLAKSASGA 183 + + ++A GA Sbjct: 221 NHCADLYDHRVVRAARGA 238 >gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] Length = 241 Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 17/152 (11%) Query: 136 MVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++L H + P NIGA R+ + S +I K + E+ V A SA LE I + Sbjct: 12 IILSHTSHPGNIGAAARAMKTMGLSSLYLINPKTFPDKEADVRAVSARDILEKIRVC--T 69 Query: 194 NLTDALQKMHSWGFQTI---GLSSD------SKKPLEQEIKNDKIALILGAEGKGLRPKT 244 L +AL T LS D + L + + +AL+ G E GL T Sbjct: 70 TLDEALDNTVLTAAMTARPRDLSHDVFNARQGARELLRYARQHPVALLFGTETSGL--TT 127 Query: 245 QETATSMAHLHMPG--IIKALNVSNAAAVALY 274 E + +H+P +LN+++A V Y Sbjct: 128 AEVSKCQMIIHIPANPEFTSLNLASAVQVMTY 159 >gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] Length = 316 Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust. Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 37/213 (17%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPL--LSPTLDAVRNSQLLMVLDHVNDPHN 146 P+ + I + VG A+H+G+ E P+ L LD + +V + V D N Sbjct: 92 VPILVASRRVIAETVGF-ALHRGVVAHAERPPVQALEDFLDLWAPGETALVAEGVVDQEN 150 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------- 199 +GA+ R+A AF ++ + + + ++G L +P +R + AL Sbjct: 151 LGALGRNAAAFGACALVLDPTSADPRNRRSVRVSAGHLLTLPLVRATPWPSALALLARSQ 210 Query: 200 ------------QKMHSWGF-------------QTIGLSSDSKKPLEQEIKNDKIALILG 234 Q++ + + IG ++ P E ++ ++AL++G Sbjct: 211 VRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHARAPGEHDLPRPRVALLVG 270 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +EG GL P A + + + + ++N++ Sbjct: 271 SEGHGLSPSALAYADVLVTIPIANGVDSVNLAT 303 >gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 257 Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 15/154 (9%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D R+S + + + ND NIG ++R+A AF+ D + R + + L Sbjct: 101 IDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLR 159 Query: 186 HIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKK--PLEQEIKNDKIALILGAEGKGL 240 H +++ K+ +W + T+ ++ PLE ++ L+ G EG G+ Sbjct: 160 H---------HESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q+ A + G +++N AA +A++ Sbjct: 211 SAAAQDAALMTCSIAQFGSTRSINAGVAAGIAMH 244 >gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1] gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1] Length = 249 Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++L++ LD V DP N+G I+R A + ++ + + + + + +S+ G+ + + Sbjct: 104 NELVIALDDVRDPGNLGTIIRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNFY- 162 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATS 250 D + WG G E+K+ L++G E G+ + + + Sbjct: 163 ---YGDLKEVFEEWGVPIYGAYLGGSNI--HELKSPAAGVLLMGNESNGISKELEPFVSK 217 Query: 251 MAHLHMPGIIKALNVSNAAAV 271 + G ++LNV+ A A+ Sbjct: 218 KLTIPGSGEAESLNVAIATAI 238 >gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 215 Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 MV D V+ N+ AI+R+ A +I T+ Y +A G+ + Sbjct: 1 MVTDFVHKQRNLSAIVRNCDAVGIQRMHAVIGTEDYK-----TFRGTAMGSHHWVDVDTH 55 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251 N AL + + G+Q + D + +++ +++GAE +G+ E Sbjct: 56 QNPAVALDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRC 115 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M G++++ NVS AA + L Sbjct: 116 ITIPMVGMVESYNVSVAAGIIL 137 >gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC 15703] gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 304 Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 238 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 293 >gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica] Length = 228 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186 L++ ++ +N+G I R+A F + I+ +K Y+ LA +A ++ Sbjct: 79 LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 132 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245 I ++ NL L M G+ GL + +E+ K ++LG E +G+ Sbjct: 133 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 192 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + GII++LNV +AA++++ Sbjct: 193 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 221 >gi|289668560|ref|ZP_06489635.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 180 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 L + LD V +PHN GA+LRS+ F G++ Sbjct: 145 LALWLDGVGNPHNFGAMLRSSAHFGVAGLL 174 >gi|229817083|ref|ZP_04447365.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM 20098] gi|229784872|gb|EEP20986.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM 20098] Length = 275 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV++ +I Sbjct: 209 PMETYRFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 268 Query: 277 QN 278 Q+ Sbjct: 269 QH 270 >gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030] gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AN-5034] gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus Peru-466] gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037] gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus Peru-466] gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AN-5034] gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037] gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030] Length = 244 Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L++ LD V+DP N+G I+R A + II + Y+P K+ S + Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++S L D + G + + + + + I L++G+E G+R + + T Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVT 212 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + G ++LNV+ A + L Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236 >gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus kowalevskii] Length = 445 Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G AV E P++S ++ L ++ D++ +P N+GA+LRSAVA I+ T Sbjct: 206 GIMAVFSQPRFEDLPMMSEE----QSIPLTVICDNIREPGNLGALLRSAVAAGSQQILVT 261 Query: 166 K 166 K Sbjct: 262 K 262 >gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] Length = 213 Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD+V N+G++ R+A + E +AK++ GA + + ++ Sbjct: 62 LLDNVRSLRNVGSMFRTADGAGVKAMHLCGFTPTPEHPKMAKTSLGAEASVAWSHHADGA 121 Query: 197 DALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249 A + G + L + + + I L+LG E G+ P+ Sbjct: 122 AAAAALVEQGRRLWALEGGPRAEDLFDLARVSGGPSDPAIVLVLGHEVSGVDPRILAHCE 181 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + M GI +LNVS A AVA Y+ + Sbjct: 182 RVARIPMAGIKGSLNVSVAFAVAAYLLR 209 >gi|257054410|ref|YP_003132242.1| transcriptional regulator, AsnC family [Saccharomonospora viridis DSM 43017] gi|256584282|gb|ACU95415.1| transcriptional regulator, AsnC family [Saccharomonospora viridis DSM 43017] Length = 148 Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSES 173 +AP + +D +R + +L V DP +G + V C G ++ R P Sbjct: 30 SAPAVKRRVDRLRETGVLRGFTAVVDPEALGWGTEAFVEVHCQGNVSPTRIRAHLEPLPE 89 Query: 174 AVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTI 210 V A + SGA + I ++R I +L DAL+++ G + I Sbjct: 90 VVAAYTVSGAADAIVHLRAADIHHLEDALERLR--GLEII 127 >gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329] Length = 244 Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189 L++ LD V+DP N+G I+R A + II + Y+P K+ S + Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++S L D + G + + + + + I L++G+E G+R + + T Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVT 212 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + G ++LNV+ A + L Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236 >gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST] gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST] Length = 1402 Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 6/151 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIR 191 L++V VN N+G + R+ F+ ++ + + E L+ +A L+ I ++ Sbjct: 1247 LIVVASLVNRAPNLGGLARTGEIFAIKQLVINSLQDIGNKEFQALSMTAEKWLK-IGELK 1305 Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + L++M G+ +G + K + Q K L+LG E GL + Sbjct: 1306 THRVVEYLREMKEKGYSVVGAEQTTGSKAIHQLQFPKKSVLVLGHEKNGLPAEIIRHLDL 1365 Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + + G++++LNV A+ + Y Q+H Sbjct: 1366 IGEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 1396 >gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 320 Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 309 >gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 237 Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG+++R+A AF+ I R + + + H P ++ L Sbjct: 103 NIGSVVRTANAFAAAEIHIVGRRRWNRRGAMVTDRYQHVRHHP-----DVEAFLAWAQDA 157 Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +G+ + +E+ ++ ++ G EG GL P+ + + + H+ G +++N Sbjct: 158 GLPVVGIDNVPGSVAIERYAFPERCVMLFGQEGAGLTPEARSASVDLVHITQFGSTRSIN 217 >gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 242 Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust. Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 16/147 (10%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191 +++ LD+V DP N+G ++R F + ++ + + + ++ G+L + Y+ Sbjct: 98 IILALDNVQDPGNLGTLIRLCDWFGIETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYVD 157 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + + + + E D + LILG E G+ P+ + A Sbjct: 158 LAGF------LATCSLPVYVMDLEGENLYTTEFPEDCV-LILGNEANGITPEVRSLANKA 210 Query: 252 AHLHMPGIIK-----ALNVSNAAAVAL 273 + +P K +LNV+ A A+ L Sbjct: 211 --ITIPRFSKHQQTESLNVAMAGAIVL 235 Searching..................................................done Results from round 2 >gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA Sbjct: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP Sbjct: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 >gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 300 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 222/286 (77%), Positives = 250/286 (87%), Gaps = 4/286 (1%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHT 56 M L+ K+ KI S KDSHYAKLRRN+RD KK+Q NQK +H +Q NLFLYG+HT Sbjct: 15 MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL Sbjct: 75 VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S PLE+EIK+DKIALILGAE Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300 >gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] Length = 293 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 151/290 (52%), Positives = 199/290 (68%), Gaps = 13/290 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLY 52 K + S +DSHYA LRR RD K+ + QK R ++ P+ +FLY Sbjct: 2 SKDNPNDTSDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AALNNP RK +L T+NAL RL+ PFPV+ V PQ +DK +G EA+HQ Sbjct: 62 GLHTVRAALNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A++ S LL+VLD V DPHN+GAI+R+AVAF +ITT R+SP+E Sbjct: 122 GVMLETRPLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL +AL ++H GF +IGL S+ +PLE+ DK+AL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LG+EGKGLR KT++T ++A L MPG IK+LNVSNAAA+ALY ++ + Sbjct: 242 LGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLR 291 >gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] Length = 295 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 14/291 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLF-----------L 51 K S +D+HYA LRR RD K+ + Q+ + ++ + + L Sbjct: 2 SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHL 61 Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+HTV AAL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+H Sbjct: 62 YGLHTVRAALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIH 121 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ LET PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES VLAKSASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] Length = 295 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 151/291 (51%), Positives = 195/291 (67%), Gaps = 14/291 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLF-----------L 51 K S +D+HYA LRR RD K+ + Q+ + ++ + L Sbjct: 2 SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHL 61 Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+HTV AAL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+H Sbjct: 62 YGLHTVRAALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIH 121 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ LET PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES VLAKSASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 310 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 142/267 (53%), Positives = 185/267 (69%), Gaps = 8/267 (2%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + +D+HYA LRR HRD K+ N PE L LYG+HTV+AAL NP R +LL Sbjct: 48 TPRDTHYANLRRAHRDRKRELKPN-------APEPLLLYGLHTVAAALQNPDRIRHRLLI 100 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 T+NA ARL+ D + P++ V P+ +D+++G EAVHQG LET PL LDA+ ++ Sbjct: 101 TRNARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDAT 159 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+ I + Sbjct: 160 LLLVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVR 219 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+++ GF+TIGL S+ + EQ I+ +KIA++LGAEGKGLR KT+ T +A Sbjct: 220 NLAETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLAR 279 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 L MPG I +LNVSNAAAVALY + Sbjct: 280 LEMPGAIHSLNVSNAAAVALYAIRRRL 306 >gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 282 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 144/275 (52%), Positives = 191/275 (69%), Gaps = 6/275 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALN 62 S+K + KD+HYAKLRR +RD K + + R P + LYG+HTV AAL+ Sbjct: 2 SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP RKI ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL +AL ++H GF+T+GL SD+ LE+ +KIAL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KT+ET T++A L MPG I +LNVSNAAA++LY+ + Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276 >gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] Length = 282 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 148/275 (53%), Positives = 186/275 (67%), Gaps = 6/275 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALN 62 S K + KD+HYAKLRR RD K + K R P + LYG+HTV AAL+ Sbjct: 2 SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP R+I ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 LDA+ +++L++VLD V DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL DAL ++H GFQTIGL SD LE D++AL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KT+ET T++A L MPG I++LNVSNAAAV+LY + Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276 >gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] Length = 303 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 R+I ++LAT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 ERRILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQGVMIEAEPLRAR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 145 KLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++HS GFQTIGL S+ +E + +IAL+LGAEGKGLR KT Sbjct: 205 ELISHIEVRNLAEAIEELHSLGFQTIGLDSEGPLEMEATLSGGRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] Length = 300 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 135/285 (47%), Positives = 191/285 (67%), Gaps = 16/285 (5%) Query: 14 SLKDSHYAKLRRNHRDYKK----MQSFNQKSRH------------TSQPENLFLYGVHTV 57 S +D+HYAKLRR+HRD K+ + + + E+++LYG+HTV Sbjct: 12 SNRDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTV 71 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AAL+NP+R+I L AT+NAL RL+ + PFPV+ V PQ ID+++G +AVHQG+ LE Sbjct: 72 RAALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLE 131 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 PL + L + ++ L+++LD V DPHN+GAI+RSAVAF ++TT+R+SP ES VLA Sbjct: 132 ARPLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLA 191 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+ASGALE I +I + NL A++ + + GF T+GL S+ P+E +K +IA++LGAEG Sbjct: 192 KAASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEG 251 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 KGLR KT+ET + L MPG IK+LNVSNA A+ALY Q + + Sbjct: 252 KGLRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYLNR 296 >gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 296 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFTTQNALARLEIDVETL-GIPFEIVSPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] Length = 284 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 142/278 (51%), Positives = 186/278 (66%), Gaps = 12/278 (4%) Query: 14 SLKDSHYAKLRRNHRDYKK----------MQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + KD+HYA LRR HRD K+ ++ Q R + + LYG+HTV+AALNN Sbjct: 9 TPKDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGR-PAPAGRVRLYGIHTVAAALNN 67 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 P RK+ LL T+NALARL+ A PV+ V P+ +D +G EAVHQG+ LET PL + Sbjct: 68 PHRKLHSLLVTRNALARLE-IAEDAIRCPVEMVEPKRLDAELGGEAVHQGVMLETEPLPA 126 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L + ++L++VLD V DPHN+GAILRSA AF D ++TT R+SP ES VLAK+ASGA Sbjct: 127 IRLSDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGA 186 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 LEH+ I + NL DAL + GF+TIGL SD + E + ++IA++LGAEGKGLR K Sbjct: 187 LEHVTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQK 246 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 TQ T ++A L MPG I++LNVSNAAA+ALY T+ H Sbjct: 247 TQATVDALARLEMPGAIRSLNVSNAAAIALYATRRHLG 284 >gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi ATCC 49188] Length = 286 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAVTEGKSPRKPQRPSISAGAVTEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 ERKILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRAR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 128 KLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++HS GFQTIGL S+ + +E + +IAL+LGAEGKGLR KT Sbjct: 188 EMISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae WSM419] Length = 291 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 143/275 (52%), Positives = 188/275 (68%), Gaps = 13/275 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52 K S +D+HYA LRR HRD ++ + R + P+ + LY Sbjct: 2 SKDKTGDKSARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AAL+NP R+I +L T+NA ARLD + PFPV+TV PQ +D+I+G +A+HQ Sbjct: 62 GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+E Sbjct: 122 GVMLETRPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+ISNL D + ++H+ GF TIGL S+ +PLE DKIAL+ Sbjct: 182 SGVLAKSASGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LG+EGKGLR KT++T ++A L MPG IK+LNVSN Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] Length = 296 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + + P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVE-ALGIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGSIKSLNVSN 281 >gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT 894] Length = 296 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 146/267 (54%), Positives = 187/267 (70%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ DA P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEIDAETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 137/274 (50%), Positives = 183/274 (66%), Gaps = 5/274 (1%) Query: 11 KIFSLKDSHYAKLRRNHRDYK---KMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSR 66 K + ++SHYA+LRR +RD K S N K + S + + LYG+H+V AAL NP R Sbjct: 2 KEKTSQNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKR 61 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L T+NAL RL+ + +P PV P+ +D +VG EAVHQG+ LET+PL L Sbjct: 62 IFKCLYVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKL 120 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEM 180 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL + LQ++H GF + GL S+ +PLE + KIAL+LGAEGKGLR KT+E Sbjct: 181 IHYITVRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRE 240 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++A L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 TVCALARLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] Length = 296 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] Length = 291 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 138/275 (50%), Positives = 184/275 (66%), Gaps = 13/275 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52 K S +DSHYA LRR HRD ++ + R + P+ +FLY Sbjct: 2 SKDKSGDKSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVFLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AAL+NP R I +L T+NA ARL+ FPV+ V PQ +D+ +G +A+HQ Sbjct: 62 GLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A+ + L+++LD V DPHN+GAI+RSAVAF +ITT R+SP+E Sbjct: 122 GVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL D ++++H GFQTIGL S+ +PLE K+AL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LG+EGKGLR KT++T T++A L MPG IK+LNVSN Sbjct: 242 LGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSN 276 >gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CNPAF512] Length = 296 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 146/267 (54%), Positives = 189/267 (70%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDVE-ALDIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] Length = 291 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 142/275 (51%), Positives = 186/275 (67%), Gaps = 13/275 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52 K S +D+HYA LRR HRD ++ + R + P+ + LY Sbjct: 2 SKDKTGDKSARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AAL+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQ Sbjct: 62 GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+E Sbjct: 122 GVMLETQPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LG+EGKGLR KT++T ++A L MPG IK+LNVSN Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28] gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis M5-90] Length = 303 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 QRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 187/267 (70%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK R ++ P+ + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ LE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 303 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E+ VLAK+ASGAL Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] Length = 303 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] Length = 291 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 142/275 (51%), Positives = 186/275 (67%), Gaps = 13/275 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52 K S +D+HYA LRR HRD ++ + R + P+ + LY Sbjct: 2 SKDKTGDKSARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AAL+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQ Sbjct: 62 GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+E Sbjct: 122 GVMLETQPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LG+EGKGLR KT++T ++A L MPG IK+LNVSN Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] Length = 286 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPTIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC 25840] Length = 303 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 26 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 85 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEVTLSGNRIALVLGAEGKGLRQKT 264 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 141/267 (52%), Positives = 182/267 (68%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + + + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKITLFVTQNALARLEVDVE-ALGMPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6 str. 870] gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2 str. 86/8/59] gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4 str. 292] gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9 str. C68] gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1 str. 9-941] gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] Length = 286 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330] gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3 str. Tulya] gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5 str. 513] gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3 str. 686] gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M163/99/10] gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis B2/94] gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M644/93/1] gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M13/05/1] gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M292/94/1] gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae 5K33] gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis bv. 3 str. Ether] gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M490/95/1] gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94] gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99] gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99] gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330] gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC 23365] gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis ATCC 23457] gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99] gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] Length = 286 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 276 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 135/276 (48%), Positives = 190/276 (68%), Gaps = 3/276 (1%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 +K + KDSHYA+LRR HR+ + N+++ + LYG+HTV AA++NP+R Sbjct: 2 SDHKKTGTPKDSHYARLRRAHRE---RTAPNERAGADLPEGIVRLYGLHTVRAAIDNPAR 58 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 I Q+L T+NA RL PFPV+ V P+ ID +VG +AVHQG+ +E Sbjct: 59 SIRQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPF 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++ L++VLD V DPHN+GAI+RSAVAF D ++TT R+SP+ES VLAK+ASGALEH Sbjct: 119 SGLEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEH 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I +I + NL +A++++H+ GF T+GL S+ + LE+ ++ KIAL+LG+EGKGLR KT+E Sbjct: 179 IDHIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRE 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 T ++A L MPG I +LNVSNAAAVALYI + A+ Sbjct: 239 TVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274 >gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 286 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E+ VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13] gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13] gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13] gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] Length = 286 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 142/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR HRD +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRAR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 302 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 142/269 (52%), Positives = 183/269 (68%), Gaps = 14/269 (5%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVS 58 S KD+HYA LRR HRD K+ + QK + P+ ++LYG+HTV Sbjct: 19 KSAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVR 78 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AAL NP RK +L T+NAL RL+ P + V PQ IDK++G EA+HQG+ LET Sbjct: 79 AALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLET 138 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF +ITT+R+SP+ES VLAK Sbjct: 139 RPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAK 198 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SASGALE IPYI+I+NL DAL ++H GF +IGL S+ PLE +K+AL+LG+EGK Sbjct: 199 SASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGK 258 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267 GLR KT+ET ++A L MPG IK+LNVSN Sbjct: 259 GLRQKTRETVNALARLDMPGAIKSLNVSN 287 >gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC 23445] Length = 286 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64 + KDSHYA+LRR H D +K + + R +P + LYG+HTV AA+ NP Sbjct: 9 TPKDSHYARLRRQHHD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQG+ +E PL + Sbjct: 68 QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E+ VLAK+ASGAL Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+LGAEGKGLR KT Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] Length = 275 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 1/269 (0%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 F K K ++ R+ K+ + R + LYG HTV AAL NP R I +LL Sbjct: 4 FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 ++NA RL D N+ P + V P ID+ +G +AVHQGL E PL P LD + Sbjct: 64 LSENAARRLA-DENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL ++ GFQT+GL S+ L + +AL+LGAEGKGLR T++T +++A Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 L MPG IK+LNVSNAAA+ALYI + Sbjct: 243 RLDMPGEIKSLNVSNAAALALYIGASRLG 271 >gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 276 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 134/274 (48%), Positives = 182/274 (66%), Gaps = 5/274 (1%) Query: 11 KIFSLKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K + ++SHYA+LRR +RD K + + +K + Q + LYG+H+V AAL NP R Sbjct: 2 KEKTSQNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKR 61 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + L T+NAL RL+ + +P V P+ +D +VG EAVHQG+ LET PL L Sbjct: 62 ILKCLYVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKL 120 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVA +ITT R+SP ES VLAK+ASGALE Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEM 180 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL +ALQ++H GF + GL S+ KPLE + +KIAL+LGAEGKGLR KT+E Sbjct: 181 IHYITVRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRE 240 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 TVCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris CGA009] gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009] gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] Length = 275 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 1/265 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + +++ R + F + R + LYG HTV+AAL NP RK +L T+N Sbjct: 7 NPRFSRRDGPPRGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTEN 66 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL + N+ + V P ID+ +G +AVHQG+ E PL P +D + +++ Sbjct: 67 AARRLAEE-NIDTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S+ L +AL+LGAEGKGLR T++T ++A L M Sbjct: 186 RALTELNDRGFLTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDM 245 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 PG IK+LNVSNAAA+ALYI + Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270 >gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] Length = 247 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDK 103 E +++G+H V A L S +I +L + + + L KTVP + +DK Sbjct: 3 EEHWVFGIHAVEALLQGQSNRIEELWLQQGRNDKRINELQLHARQVGVKCKTVPREELDK 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 V + HQG+ T P L LD + + LL++LD V DPHN+GA LR+A A Sbjct: 63 QV--DGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRTADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S +A + K A GA E +PYI+++NL ++ + G G + ++ Sbjct: 121 AGVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + Q +AL++GAEGKG+R T+E + +L M G + +LNVS A V L+ Sbjct: 181 EQSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus Ueda107] Length = 249 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 13/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIV 105 +YG+H V A L + +++ ++ + RL A+ + V +D +V Sbjct: 4 ELVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAELNQIHCNLVSRNKLDDMV 63 Query: 106 GKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +E HQG+ P L L+ + L+VLD V DPHN+GA +RSA A Sbjct: 64 SEE-NHQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + V K A GA E +P+I ++NL L+K+ G G + ++ + Sbjct: 123 VHAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--T 276 L Q IA+++GAEG GLR TQET + H+ M G + +LNVS A V L+ Sbjct: 183 SLYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVR 242 Query: 277 QNHFA 281 Q A Sbjct: 243 QRQVA 247 >gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 245 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 116/243 (47%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +++G H V A L ++ ++ ++ + DA P K V + +D+ Sbjct: 3 QEYVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDER 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V VHQG+ A T D + L+VLD V DPHN+GA +R+A A Sbjct: 63 VS--GVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S S + V K A GA E +P++R++NL L+++ G IG + ++ Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] Length = 275 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 116/265 (43%), Positives = 165/265 (62%), Gaps = 1/265 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +S +++ R + F + +R + LYG HTV+AAL NP RK +L T+N Sbjct: 7 NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A +L D N+ + V P ID+ +G +AVHQG+ E L +P +D + +++ Sbjct: 67 AARKLA-DENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL+ Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S+ + L +AL+LGAEGKGLR T++T T++A L M Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 PG IK+LNVSNAAA+ALYI + Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270 >gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] Length = 289 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 14/287 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 + ++ ++ K + +K+ QS + R E + L G + V+ AL + Sbjct: 2 EQKRKTRPQERRSRKFEKEAPRHKRPQSETEPKRREEPRELPDDVLVGRNAVTEALKSG- 60 Query: 66 RKIFQLL-ATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 R I +L A+ + + A L V+ V I+ + G HQG+ AP+ Sbjct: 61 RGINKLWIASGDREGSVAEIAALAKERGIVVQYVERAKIEALAGGHR-HQGVLAYVAPVP 119 Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+ + + L++LD + DPHN+GA+LR+A A GI+ KR S S +A Sbjct: 120 YAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGILIPKRRSVSLNAT 179 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 +AK+++GA+E++P RI N+ L+K+ GF G D +K + + L++G+ Sbjct: 180 VAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEADLTGPLVLVVGS 239 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 EGKG+ T+E + + M G I +LN S A ++ +Y + + Sbjct: 240 EGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMYESMRQRLQ 286 >gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15] Length = 245 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVK--TVPPQTIDKI 104 F++G H V A L + Q+ T R+ + VK V + +D+ Sbjct: 3 GEFVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDER 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V VHQG+ + T D + L+VLD V DPHN+GA +R+A A Sbjct: 63 VS--GVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S S + V K A GA E +P++R++NL L+ + G IG + ++ Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] Length = 247 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L + ++ K R A V+ Q +D Sbjct: 3 EDIIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 63 T-EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 282 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 17/277 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 ++S+ K + K+ ++ K S Q F+YG H V AL P R + +L Sbjct: 6 RNSNRRKGSQPKGFKKEAKAPRPKYTPESSSNEQESTDFVYGRHAVREALQQPER-VNKL 64 Query: 72 LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + + D H ++ VP + +VG E VHQG+ A TL+ Sbjct: 65 WVQEALSGKEITPIIDLAKEHRIQIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLED 123 Query: 129 V-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 V +++LD + DP+N+G+ILR+A A GII KR S S ++ +AK+++ Sbjct: 124 VFEKAQEKNEDPFILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKAST 183 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA+EH+P +R++NLT ++++ G G Q IA+++G EGKG+ Sbjct: 184 GAIEHVPVVRVTNLTQTIEQLKERGVWVFGTDMKG-TDYRQWNTKGPIAIVMGNEGKGVS 242 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ M + M G +++LN S A+A+ +Y Sbjct: 243 RIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFR 279 >gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter turicensis z3032] gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter turicensis z3032] Length = 243 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + ++ K + A PV+ Q +D+ Sbjct: 2 SEMIYGIHAVQALLESAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 62 AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A PV+ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 62 AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 116/279 (41%), Positives = 171/279 (61%), Gaps = 2/279 (0%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 S+ ++ F+ K + +R K + R ++ + LYG H+V+ AL Sbjct: 28 DTSEPMKDRKFTSKGPRGGA-KPFNRPGKSAGRPAWRDRDSASDGPVILYGWHSVTMALQ 86 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP+R+I +L T+NA RL + N+ + V PQ ID+++ +AVHQGL E PL Sbjct: 87 NPARRIRKLTLTENAARRLAEE-NIETRVTPEIVRPQEIDRLLSPDAVHQGLLAEADPLP 145 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 SP ++ + +++VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAK+ASG Sbjct: 146 SPDIETLTPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKAASG 205 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALE +P + + NL AL ++ GFQT+GL S+ + L + +AL+LGAEGKGLR Sbjct: 206 ALELVPVVTVQNLARALTALNERGFQTVGLDSEGSEDLSNVALREPLALVLGAEGKGLRQ 265 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+ET + +A L MPG IK+LNVSNAAA++LY+ + Sbjct: 266 LTRETCSVVARLDMPGEIKSLNVSNAAALSLYVGASRLG 304 >gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] Length = 245 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L+G+H V+ AL +++I ++L K + D L ++ V + ++++V K Sbjct: 6 LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRLIDTALDLRIRIEQVSKRELEELV-K 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+ P L LD + L++LD V DPHN+GA LR+A A Sbjct: 65 GAVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S +A AK A GA E +PY+ ++NL L+ + G T G + ++ + Sbjct: 125 AVVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLDI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +ALI+GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 185 YQANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244 >gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 267 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 21/267 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPE----------NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 RD ++ + K R + P +++LYG+H VSAAL NP R+I +L+AT A Sbjct: 4 RDDRRAPLPHGKGRPQNAPRASGGGGGGGSSIWLYGIHAVSAALANPERRIRRLVATTEA 63 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131 L PV+T+ ID+++ +VHQG+AL PL + T++ + + Sbjct: 64 AKSLP-----ATKIPVETMERAEIDRLLAPGSVHQGIALLVEPLPAITMEDIIRMADSAS 118 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S L++VLD V DPHN+GAILRSA AF ++ R++P E+ LAKSASGALE +P +R Sbjct: 119 SALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHAPDETGTLAKSASGALERMPLVR 178 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++N+ AL+ M GF T GL++D+ K L + + K+ L+LGAEG+G+R T+E + Sbjct: 179 VTNVVRALEDMKKGGFWTAGLAADAPKTLAEAELSGKVVLVLGAEGEGMRRLTREHCDHL 238 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 L M G +++LNVSNAAAVALY + Sbjct: 239 VRLPMCGEMESLNVSNAAAVALYEIRR 265 >gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 272 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 136/271 (50%), Positives = 181/271 (66%), Gaps = 5/271 (1%) Query: 16 KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 KDSHYA+LRR +RD K + ++ ++ Q E ++LYG+H V AAL NP R + L Sbjct: 3 KDSHYARLRRRYRDTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILRHL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 T NAL RLD + + P+ P+ ++ VG+EAVHQG+ LET PL S +L + N Sbjct: 63 YTTPNALKRLDINESNI-ACPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSELTN 121 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 122 TDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYIT 181 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL ALQ++H F + GL S+ K PLE + KI+LILGAEGKGLR KT+E S+ Sbjct: 182 VRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENVYSL 241 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A L +PG IK+LNVSNAAA+ALY + + Sbjct: 242 ARLDLPGDIKSLNVSNAAAIALYAVHKYLRQ 272 >gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] Length = 287 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 143/288 (49%), Gaps = 12/288 (4%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALN 62 +++ + ++ + + R+ R K+ + + R +Q F++G H V AL Sbjct: 1 MARNEYAPKKKSRNGNRSDRGRSERAEKRPRPTREHVERVEAQDVVDFVFGRHAVVEALQ 60 Query: 63 NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P R ++F T A D V+TVP I+ +VG AVHQGL A Sbjct: 61 TPDRVNRVFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVG-NAVHQGLVASIAA 119 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 L+ V +++LD V DPHN+G+ILR+A A GII KR S S + Sbjct: 120 YEYADLEDVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLT 179 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 A +AK+++GA+EH+P +R++NLT ++++ + G G + + +A+++ Sbjct: 180 ATVAKASTGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNG-TDYRKWNTKGPLAIVM 238 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G EGKG+ +E+ M + M G +++LN S A+A+ +Y + + Sbjct: 239 GNEGKGVSRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNRS 286 >gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 267 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 105/270 (38%), Positives = 154/270 (57%), Gaps = 11/270 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +K + H K Q +++LYG+H V AAL NP R+ +L+AT Sbjct: 1 MKKTEERNRPHGHGKGKPPQHPRGSGGGGGGGSSIWLYGIHAVCAALANPDRRARRLVAT 60 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----- 129 A L PV+T+ ID+++ +VHQG+AL PL + T++ V Sbjct: 61 VEAAKSLP-----ATKVPVETMERSEIDRLLAPGSVHQGVALLVEPLPATTIEDVIRMAD 115 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S L++VLD V DPHN+GAILRSA AF ++ R++P E+ LAKSASGALE +P Sbjct: 116 GAPSALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHTPDETGTLAKSASGALERMP 175 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +R++N+ L+ + GF T GL++D+ K L + + K+ L+LGAEG+G+R T+E Sbjct: 176 LVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMRRLTREHC 235 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M G +++LNVSNAAAVALY + Sbjct: 236 DHLVRLPMCGEMESLNVSNAAAVALYEMRR 265 >gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103] gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103] Length = 259 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 17 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIVIQLADRKWLDSQ 76 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P P L L+VLD V DPHN+GA LRSA A Sbjct: 77 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 136 AHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 195 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 196 TVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 255 Query: 279 HFA 281 Sbjct: 256 QRN 258 >gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 247 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L ++ K R A V+ Q +D Sbjct: 3 EDIIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 63 T-EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 14/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102 + +YG+H V A L+ ++ ++ K R L ++ V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDI--GITVQLANRQWLD 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ + P + + L+VLD V DPHN+GA LR+A A Sbjct: 60 TQT-ESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 119 AGVDAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 179 THSLYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEI 238 Query: 277 QNHFA 281 + Sbjct: 239 MRQRS 243 >gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1] gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 255 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ R+ L + V+ + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 185 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244 Query: 281 A 281 Sbjct: 245 G 245 >gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 276 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 133/272 (48%), Positives = 185/272 (68%), Gaps = 5/272 (1%) Query: 13 FSLKDSHYAKLRRNHRDYKK-MQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKI 68 + ++S++A LRR +RD K + S + + ++ P E + LYG+H V+AAL NP+R + Sbjct: 4 KARRNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVL 63 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT NAL RL+ + P P ++ P+ +D ++G +AVHQG+ LET PL S L Sbjct: 64 ECLYATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSE 122 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE I Sbjct: 123 LTHTDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMID 182 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 YI + NL +AL+++H F + GL S+ KPLE + KIALILGAEGKGLR KT+ET Sbjct: 183 YITVRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETV 242 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A L MPG IK+LNVSNAA +ALY T + Sbjct: 243 CALARLDMPGNIKSLNVSNAATIALYATHKYL 274 >gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C] Length = 272 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 138/272 (50%), Positives = 183/272 (67%), Gaps = 5/272 (1%) Query: 15 LKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 LKDSHYA+LRR +R+ K + ++ ++ Q E ++LYG+H V AAL NP R + Sbjct: 2 LKDSHYARLRRRYRNTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVLRH 61 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L AT NAL RL + + PV + P+ ++ VG+EAVHQG+ LET PL S L + Sbjct: 62 LYATPNALKRLGINESNI-ACPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLSELT 120 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 121 NTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 180 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + NL LQ++H F + GL S+ K PLE +K KI+LILGAEGKGLR KT+E A S Sbjct: 181 TVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTRENAYS 240 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A L +PG IK+LNVSNAAA+ALY + + Sbjct: 241 LARLDLPGDIKSLNVSNAAAIALYAVHKYLRQ 272 >gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] Length = 247 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L + ++ K R V+ Q +D Sbjct: 3 EEIIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQ 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 63 T-EGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P I+++NL L+ + +G + ++ Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591] gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591] Length = 244 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGGIAVQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617] Length = 245 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S + +A K ASGA EHIP +R++NL ++ + +G + ++ Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R + A L ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + AVHQG+ L L+ + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVREGRQYQENDLPALLENLDKPPFLLILDGVTDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 GVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 HNLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 240 Query: 278 NHFA 281 Sbjct: 241 RQRG 244 >gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech586] Length = 244 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASGIAVQVASRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 290 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 17/285 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSAAL 61 +++ K + ++S+ K R N+R KK + N+ ++ + + G + V AL Sbjct: 2 RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61 Query: 62 NNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I L + + L +K V + +D + AVHQG+ Sbjct: 62 KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P + + + +++LD V DPHN+G+I+R+A F GII KR S S Sbjct: 120 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ KS+ GA+EH+ R++NL + ++ G G +++ Q A+ Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I+G EGKG+ T + + + M G I +LN S A + +Y Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 284 >gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] Length = 290 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 17/285 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSAAL 61 +++ K + ++S+ K R N+R KK + N+ ++ + + G + V AL Sbjct: 2 RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61 Query: 62 NNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I L + + L +K V + +D + AVHQG+ Sbjct: 62 KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P + + + +++LD V DPHN+G+I+R+A F GII KR S S Sbjct: 120 TPYEYSEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ KS+ GA+EH+ R++NL + ++ G G +++ Q A+ Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I+G EGKG+ T + + + M G I +LN S A + +Y Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 284 >gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] Length = 245 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L N ++I ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLENSPQRIKEVYILKGREDRRLMPIVHEIEAQGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L S L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A + K A GA E+IP IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q + IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 245 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L ++ L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S + +A K ASGA EHIP IR++NL ++ + +G + ++ Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 245 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ ++ K R + V+ Q +D Sbjct: 2 SEIIYGIHAVKALLESDPQRFMEVYVLKGREDRRLTPLFQELESIGITVQLANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L + + L+VLD V DPHN+GA LR+A A Sbjct: 62 T-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 121 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGEATH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas fluorescens Pf-5] Length = 254 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + ++ D + V + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YDQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244 Query: 281 A 281 Sbjct: 245 G 245 >gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] Length = 255 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 14 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 73 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 74 -SEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 132 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 133 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 192 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 193 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 252 Query: 279 HFA 281 + Sbjct: 253 QRS 255 >gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] Length = 244 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R + V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEANGIAVQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P L A ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] Length = 249 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+ + + ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDRDASRFKEVYILKGREDRRLMPIIHEIESLGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P R++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240 Query: 279 HFAK 282 A+ Sbjct: 241 QRAE 244 >gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii Ech703] gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech703] Length = 244 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANL-PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R L A L VK Q +D+ Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L R++ L+VLD V DPHN+GA LRSA A Sbjct: 62 A-EGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] Length = 289 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 15/289 (5%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAA 60 + K E+ + + ++ +R KK NQ ++ E+ F++G H A Sbjct: 1 MKKMGKERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEA 60 Query: 61 LNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L K+F ++ + PVK VP Q ++ + VHQG+ L Sbjct: 61 LQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAIT 119 Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P +LD + + ++LD + DPHN G+ILR+A A DG+I K + Sbjct: 120 PYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGI 179 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + ++ K+++GA+EH+P R++NL A+Q++ GF G ++ IAL+ Sbjct: 180 TPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALV 238 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 +G EGKG+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 239 IGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 287 >gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R A ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFIEVYVLKGREDRRLTPLIHALESIGMTIQLANRQWLDNQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] Length = 244 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRN 243 >gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] Length = 248 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 12/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E FL+G+H V AAL + L K+A R DA V+ V Q +++ Sbjct: 3 EPQFLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQALER 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAV 155 + A HQG+ E P + S LL+VLD V DPHN+GA LR+A Sbjct: 63 LC-PGARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLRTAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D +I + + + V K ASGA E +P+++++NL L ++ G IG S D Sbjct: 122 AAGVDAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSGD 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L Q IA+++GAEG+G+R T+E + ++ M G + +LNVS A V L+ Sbjct: 182 APQTLYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFE 241 Query: 276 TQNHF 280 Sbjct: 242 VVRQR 246 >gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp] Length = 250 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL ++ A + + H PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244 >gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] Length = 266 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106 F++G H V A L ++ Q+ T R+ L V + V + +D V Sbjct: 24 FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLDSRVA 83 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ + + D + L++LD V DPHN+GA +R+A A Sbjct: 84 --GVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + + V K A GA E +P++R++NL L+ + G +G + ++ Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEGKG+R T+E + ++ M G +++LNVS A+ V LY Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQ 261 Query: 280 FA 281 + Sbjct: 262 RS 263 >gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] Length = 243 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] Length = 243 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] Length = 278 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 10/270 (3%) Query: 20 YAKLRRN---HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATK 75 Y K RN +D +K K + F++G H V AL K+F L + Sbjct: 5 YKKESRNVGNKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDAR 64 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RN 131 + + PVK VP Q +++ ++ VHQG+ L P +LD + Sbjct: 65 GERIDEVKELSKEQSVPVKWVPKQKLEQ-YSQQGVHQGMVLAITPYEYLSLDELLAKSPE 123 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EH+P R Sbjct: 124 KPFFIILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIAR 183 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ A+Q + GF T G + + IALI+G EG+G+ +++ + Sbjct: 184 VTNLSQAVQTLKERGFWTFGTAMEG-TNYRSWNTQGAIALIIGNEGRGMSEGLKKSVDEL 242 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G +++LN S AA + +Y + Sbjct: 243 LTIPMVGHVQSLNASVAAGLLMYEAFMQRS 272 >gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] Length = 271 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 134/272 (49%), Positives = 179/272 (65%), Gaps = 2/272 (0%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K + KDSHYA+LRR +RD K F + Q E ++LYG+H V AAL NP R + Sbjct: 2 KKNTPKDSHYARLRRQYRDTKGF-LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRH 60 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L AT NAL RL+ + + P+ P+ ++ VG EAVHQGL LET L S +L + Sbjct: 61 LYATPNALKRLNINES-SLSCPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELT 119 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 120 NTDLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 179 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + NL+ AL++++ F + GL S+ + PLE + +KI+L+LGAE KGLR KT+ET Sbjct: 180 TVQNLSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYK 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A L MPG IK+LNVSNAA +ALY + + Sbjct: 240 LARLDMPGDIKSLNVSNAATIALYAAHKYLRQ 271 >gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] Length = 244 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P P L L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRN 243 >gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] Length = 255 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K RL V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTGLAVQVASRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P + + ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVREGRKPQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL L+ + +G S ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEGKG+R T+E + + M G++ +LNVS A + L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO] gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] Length = 286 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+EH+P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] Length = 243 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A H ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1] gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 248 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + R+ L PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A K ASGA EHIP IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLHQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris BisA53] Length = 276 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 1/243 (0%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + R LYG HTV AAL NP R+I L T+NA RL D N+P + V P Sbjct: 30 RDRGERPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRP 88 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ID+ +G +AVHQGL E PL SP +D++ +++VLD + DPHN+GAILRSA AF+ Sbjct: 89 SAIDQRLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFA 148 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I+ T R+SP + VLAKSASGALE +P + + NL AL +++ GF TIGL S+ Sbjct: 149 VKAIVITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDD 208 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L +AL+LGAEGKGLR T++T ++A L +PG IK+LNVSNAAA+ALYI + Sbjct: 209 DLASIELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALYIGAS 268 Query: 279 HFA 281 Sbjct: 269 RLG 271 >gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] Length = 243 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQVASRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2] gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] Length = 248 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + R+ L PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SE11] gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 243 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + L A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 274 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 15/279 (5%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYK------KMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 EKI K HY +L+R D K +M+ + RH ++LYG+H+V AAL Sbjct: 2 REKIS--KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRH----GTIYLYGLHSVHAALK 55 Query: 63 NPSRKIFQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NP R L T NAL RL+ +++LP P+ P+ +D VG +AVHQG+ LET PL Sbjct: 56 NPKRVFEHLYITPNALKRLNIPESDLP--CPITLCLPKQLDSFVGNDAVHQGIVLETEPL 113 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L + N+ L++V+D + DPHN+GAI+RSAVAF + +ITT R+SP ES VLAK+AS Sbjct: 114 KPCQLSELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAAS 173 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GALE I YI + NL + LQ++H GF + GL S+ PLE + +KIAL+LGAEGKGLR Sbjct: 174 GALEMIHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLR 233 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KT+E ++ L MPG IK+LNVSNAA +ALY + Sbjct: 234 KKTRENVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272 >gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] Length = 286 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+EH+P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] Length = 245 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL--PHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K RL V+ Q +D Sbjct: 2 SEIVFGIHAVKALLDSSPQRFQEVFILKGRDDKRLQPLVKELEAQGIVVQIANRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P P L +S L++LD + DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K ASGA EH+P I ++NL ++ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] Length = 243 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D+ Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ + + ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVREGRQYQENDLPGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 243 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R H ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAHGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++AVHQG+ + L LD + + L++LD V DPHN+GA LR+A Sbjct: 62 A-EDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNADGA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239 Query: 278 NHFA 281 A Sbjct: 240 RQRA 243 >gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia proteamaculans 568] gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia proteamaculans 568] Length = 243 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D+ Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P L ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVREGRQYQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 248 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + R+ L PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ + LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida GB-1] Length = 248 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 243 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas aeruginosa UCBPP-PA14] Length = 248 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + R+ L PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244 >gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] Length = 281 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 20/286 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 +S K S + +H K + KK+++ S P+ ++G H V L Sbjct: 4 DTSRSRKSTSKRQTHKKKY--DETTDKKIENIPDAS-----PQEEIIFGKHAVMETLKKN 56 Query: 65 SRKIFQLLATKN-ALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 I +L K A +++ L H + VP +D++ + A HQGL L P Sbjct: 57 K-GINKLFYQKGLADSKISSIIELVKNHGGIFQEVPKSKLDELT-QGANHQGLVLTVPPF 114 Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T++ L++LD + DPHN+G+ILR+A AF GII KR + + Sbjct: 115 DYQTIEGCLALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTG 174 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++AK+++GA+EH+P +R++N+ ++ + + G + + + Q +A+++G Sbjct: 175 IVAKTSTGAIEHVPVVRVANIAQTIELLQNQGIWVFATDM-AGEDVRQWNSQGPLAIVIG 233 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG+G+ P ++ A + + M G +++LN S AA V +Y H Sbjct: 234 NEGQGVSPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHR 279 >gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] Length = 235 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 131/229 (57%), Positives = 166/229 (72%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG+HTV AAL+NP RKI ++L T+NA RL+ + F + V P+ IDKI G + Sbjct: 1 MRLYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSD 60 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 AVHQG+ +E PL LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+ Sbjct: 61 AVHQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARH 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 SP ES VLAKSASGALEHI I + NL DAL ++H GFQTIGL SD LE D+ Sbjct: 121 SPQESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDR 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY + Sbjct: 181 IALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229 >gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 244 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 10/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFAK 282 + Sbjct: 241 QRGE 244 >gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] Length = 247 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YGVH V A L + R++ +L + R+ L V + +D+ Sbjct: 7 IYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIAVGQRERRELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E +P + ++NL L+K+ G T+G + + ++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQR 244 Query: 281 AK 282 ++ Sbjct: 245 SR 246 >gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] Length = 243 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A H ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] Length = 251 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + R+ L + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 243 Query: 281 A 281 Sbjct: 244 G 244 >gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + + ++ A K + D L V+ + + +D Sbjct: 3 NELIFGFHSVEAILASEPERFVEIYALKGRDDKRSTPIIDEALKFGISVQYMQRKALDSK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K HQG+ LDA+ ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 -SKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ECD227] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638] gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638] Length = 244 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLASRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + + +A K A GA E++P IR++NL ++++ +G + ++ Sbjct: 121 VHAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TVYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFAK 282 K Sbjct: 241 QRTK 244 >gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +AVHQG+ + L LD + + L++LD V DPHN+GA LR+A Sbjct: 62 AD-DAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNADGA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239 Query: 278 NHFA 281 A Sbjct: 240 RQRA 243 >gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC H10407] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEIIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri A1501] gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 +YG+H V A L + +++ Q+ + R+ L V + +D V Sbjct: 7 IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++GAEG+G+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YAQDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 AK 282 + Sbjct: 245 GR 246 >gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii Sb227] gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + VHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +AVHQG+ + P L + L++LD V DPHN+GA LR+A Sbjct: 62 AD-DAVHQGIVAKVKEGRKYQENDLPALLDNLETPFLLILDGVTDPHNLGACLRNADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas putida BIRD-1] Length = 248 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++ + + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 248 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ + + V + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244 >gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 301] gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei Ss046] gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli E24377A] gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS] gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SMS-3-5] gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9] gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354] gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088] gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli H736] gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli CFT073] gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655] gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T] gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli UTI89] gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli 536] gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS] gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E24377A] gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC 8739] gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli SMS-3-5] gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli] gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989] gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1] gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88] gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39] gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a] gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026] gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82] gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of 23S rRNA 2'-O-ribose G2251 methyltransferase [Escherichia coli BL21(DE3)] gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str. REL606] gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1] gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15] gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella flexneri 2002017] gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042] gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088] gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354] gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli IHE3034] gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972] gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UM146] gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W] gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli DH1] gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 85-1] gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 110-3] gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 153-1] gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 16-3] gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC 9905] gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli WV_060327] gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli EC4100B] gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11] gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520] gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482] gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120] gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252] gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263] gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489] gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863] gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007] gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 57-2] gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 60-1] gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 117-3] gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167] gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. 1044] gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71] gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] Length = 243 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] Length = 286 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] Length = 286 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+EH+P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509] Length = 243 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] Length = 271 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K + D ++ Q +D+ Sbjct: 26 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDEK 85 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L + L+VLD V DPHN+GA LR+A A Sbjct: 86 -SEGAVHQGIIARVREGRQYQENDLPALLESLDCPFLLVLDGVTDPHNLGACLRTADAAG 144 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K ASGA E++P I ++NL L+ + +G + ++ Sbjct: 145 VHAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEADH 204 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 205 DLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 264 Query: 279 HFA 281 Sbjct: 265 QRG 267 >gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia coli AA86] gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] Length = 243 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERTPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185] gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185] Length = 243 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida KT2440] Length = 248 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAI-SK 76 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis N1568] Length = 250 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I+ K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] Length = 276 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ +L N K++ + D + P +T++ + Sbjct: 35 EANDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAAEKKVSISWTPKKTLNDM 94 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + LD + + L+++LD +NDPHN G+ILR+A A + Sbjct: 95 T-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADATN 153 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 154 VTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGTS 213 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+ALI+G EGKG+ P ++ M + M G +++LN S AAAV +Y Sbjct: 214 S-HKWNTSGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFR 272 Query: 279 H 279 H Sbjct: 273 H 273 >gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium wasabiae WPP163] Length = 243 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ++AVHQG+ ++ + + + L++LD V DPHN+GA LR+A Sbjct: 62 A-EDAVHQGIVVKVKEGRKYQENDLPAMLDNIETPFLLILDGVTDPHNLGACLRNADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23 rrna gm2251 2'-o-methyltransferase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus asymbiotica] Length = 245 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 14/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102 + +YG+H V A L+ ++ ++ K R + N+ V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDRDPQRFMEVYVLKGREDRRLNPLIHELENI--GVTVQLANRQWLD 59 Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+ + P P L A + L+VLD V DPHN+GA LRSA A Sbjct: 60 NQT-EGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + S +A K A GA E +P +R++NL L+ + +G + ++ Sbjct: 119 AGVHVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 179 DHTLYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEA 238 Query: 277 QNHFA 281 + Sbjct: 239 VRQRS 243 >gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 251 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + R+ L + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ + Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQR 243 Query: 281 A 281 Sbjct: 244 G 244 >gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 248 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 +N ++G H V++ L + + + ++ R D A + Q +DK Sbjct: 2 KNKVIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDK 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ APL L LD++ + LL+VLD + DPHN+GA LR A + Sbjct: 62 MVGTRR-HQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A + K ASGA E +PYI ++NL L+++ +G + DS K Sbjct: 121 AHAVIAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDK 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + A ++G+EG+G+R T+ET + + M G +++LN+S A+ + LY + Sbjct: 181 SLYEPDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] Length = 247 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + + ++ A K + D V+ + + +D Sbjct: 3 NELIFGFHSVEAILESEPERFVEIYALKGRDDKRSTPIIDEARKFGISVQFMQRKALDSK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K HQG+ LDA+ ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 -SKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] Length = 286 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SNHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKEIGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] Length = 249 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 243 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1] Length = 248 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 13/243 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 Query: 280 FAK 282 AK Sbjct: 245 RAK 247 >gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali symbiont] Length = 244 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ Q +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P + P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K ASGA E++P IR++NL ++ + + +G + ++ Sbjct: 121 VHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q + L++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC 796-83] gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 240 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK-S 59 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHTL 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 Query: 281 A 281 + Sbjct: 240 S 240 >gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] Length = 286 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDLFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+EH+P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 243 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] Length = 247 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 +YG H V++ + + ++ ++ R+ L V V +D + G Sbjct: 6 LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A LS L+ + LL+VLD + DPHN+GA LRSA AF Sbjct: 66 -GARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K A GA E +PYI ++NL L+++ G +G + ++K+ L Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A++LGAEG+GLR T ET + + M G +++LNVS + + L+ + + Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQRS 244 >gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] Length = 245 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++I ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPIVHEIEALGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L S L++LD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +++G H V A L ++ Q+ ++ + D + V + +D+ Sbjct: 3 EEYIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQR 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V VHQG+ + + D + L++LD V DPHN+GA LR+A A Sbjct: 63 VA--GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S S S + K A GA E +P +R++NL ++ + G IG + ++ Sbjct: 121 GVQAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 181 STLHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 243 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] Length = 276 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 9/249 (3%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTV 96 R + +YG H V+A L + I +L ++ A R + V Sbjct: 22 PRSANMANQRLIYGFHAVNARLWQNPKSITELYVQQDKSDARTREVLEKAADENVRVHFA 81 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 ++ I K A HQG+A L LD +R L+VLD + DPHN+GA L Sbjct: 82 DASRLNAIA-KGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACL 140 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A +I K S +A ++K A GA E +PYI ++NL L ++ +G IG Sbjct: 141 RTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIG 200 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + L D +A ++G EG+G+R T+E + + M G ++++NVS +A + Sbjct: 201 TDTGGESDLYHTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGM 260 Query: 272 ALYITQNHF 280 L T+ Sbjct: 261 VLGETRRQR 269 >gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] Length = 253 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. 1125] gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] Length = 240 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-S 59 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 Query: 281 A 281 + Sbjct: 240 S 240 >gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 255 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 246 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ ++L K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 V E HQG+ P L LD + S L++VLD V DPHN+GA LR+A Sbjct: 62 DKVSGEQ-HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADG 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGET 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 181 DKTLYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEI 240 Query: 277 QNHFA 281 + Sbjct: 241 VRQRS 245 >gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] Length = 243 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++AVHQG+ + L LD + L++LD V DPHN+GA LR+A Sbjct: 62 A-EDAVHQGIVAKVKEGRKYQENDLPAMLDNL-EMPFLLILDGVTDPHNLGACLRNADGA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A + K A GA E IP I ++NL ++ + +G + ++ Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239 Query: 278 NHFA 281 Sbjct: 240 RQRG 243 >gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. G5101] Length = 243 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + L L ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESLGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato str. DC3000] gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] Length = 249 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++I ++ K R V+ Q +D Sbjct: 2 SEMIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPLVHEIEALGVVVQVANRQWMDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P P L +S L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] Length = 243 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] Length = 246 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLISELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] Length = 249 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 250 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL ++ A + + + PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + + ++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244 >gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 253 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 286 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEYVPVARVTNLIQAVQQLKEIGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii B565] Length = 249 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 +YG+H V+A L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVTALLERTPERFIEVWALKGRDDDRLQPLLTELESLGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ L A ++ L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + + ++ K A GA E +P I+++NL L+++ G +G + Sbjct: 122 DAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 243 Score = 264 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A+ L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] Length = 249 Score = 264 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 250 Score = 264 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 247 Score = 264 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P + A + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 250 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQR 243 >gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5] gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum JF-5] Length = 276 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 14/275 (5%) Query: 16 KDSHYA-------KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRK 67 +DSH KL R +++ Q + R S L+LYG+H+V AAL NP+R+ Sbjct: 4 RDSHGKAGNGGRHKLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARR 63 Query: 68 IFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 + +L+ T+ A L LPHP+P++ + +D+++G+ VHQG+AL+ PL+ P+ Sbjct: 64 LRRLVVTEEGEAALA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121 Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L DA++ ++VLD + DP N+GAILRSA AF +I +R +P E LAK+ASGAL Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243 E IP +R N+ AL + + G +GL + L I N + AL+LGAEG+GLR Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ET + L MPG +++LNVS AAAVALY Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] Length = 243 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ + + ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIVARVREGRQYQENDLPGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] Length = 286 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 15/283 (5%) Query: 10 EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65 E+ + + ++ +R KK NQ ++ E+ F++G H AL Sbjct: 4 ERTNKHQSKRGFEDKKQNRYPNKKRTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 K+F ++ + PVK VP Q ++ + VHQG+ L P + Sbjct: 64 NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 LD + + + ++LD + DPHN G+ILR+A A DG+I K + + ++ K Sbjct: 123 LDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GA+E++P R++NL A+Q++ GF G ++ IAL++G EGK Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIG-TNFQKWNAKGSIALVIGNEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 G+ P ++ + + M G +++LN S AA + +Y Q Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284 >gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] Length = 246 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVVQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEAFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 250 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 120/279 (43%), Positives = 164/279 (58%), Gaps = 4/279 (1%) Query: 4 ISKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +S + + F + K R +++ Q + + R + LYG HTV+ AL Sbjct: 1 MSDRDRKPPFPRQGGKSSGKFAGKPRKFERPQPW--RDREQGSDGPVILYGWHTVTLALG 58 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP R+I +L T+NA RL D + + V P ID+ +G +AVHQGL E PL Sbjct: 59 NPKRRIRKLYLTENAARRLA-DERIETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLP 117 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 SP +D + +++VLD + DPHN+GAILRSA AF I+TT R+SP + VLAKSASG Sbjct: 118 SPDIDTLAAEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHSPEATGVLAKSASG 177 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALE +P I + NL AL ++ GFQT+GL S + + +AL+LGAEGKGLR Sbjct: 178 ALELVPIITVQNLARALTRLDERGFQTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQ 237 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+ET + +A L MPG IK+LNVSNAA +ALYI + Sbjct: 238 LTRETCSVVARLDMPGAIKSLNVSNAAVLALYIGASRLG 276 >gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 246 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 ++ +LYG+H + A + ++ +L K + + V+ +T+D Sbjct: 2 AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINTIINHARKFGIAVQFCQRKTLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 V E HQG+ + P LD + L+VLD V DPHN+GA LR+A A Sbjct: 62 DKVNGEQ-HQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 121 AGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + Q IAL++GAEGKG+R T+E + L M G + +LNVS A V LY Sbjct: 181 TQSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEI 240 Query: 277 QNHFA 281 A Sbjct: 241 VRQRA 245 >gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 247 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + AVHQG+ P L L + + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 GVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 HSLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVV 240 Query: 278 NHFA 281 + Sbjct: 241 RQRS 244 >gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 263 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDAN 86 K+ +K + F+ G + V A+ + I ++ K + +L A Sbjct: 3 KRTNPQPKKQMKGDNRQEEFIVGKNPVIEAIKSGH-PIHKIWIGDQSQKGQMTKLTQLAK 61 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLD 139 V+T P + +D++VG + HQG+ A +DA+ +VLD Sbjct: 62 -EQNVLVQTAPKRKLDQLVG-HSNHQGVVASVAAYEYADMDALFAKAAAAHEAPFFLVLD 119 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+G+I+R+A A GII KR S + +AK+++GA+E+IP +R++NL + Sbjct: 120 EIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLARTM 179 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ G G + ++ + N + L++G+EGKG+ +E + + M G Sbjct: 180 DELKKQGLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVSIPMKGR 239 Query: 260 IKALNVSNAAAVALYIT 276 + +LN S AA++ +Y Sbjct: 240 VTSLNASVAASLLMYEV 256 >gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] Length = 253 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIV 105 ++YG+H V AL ++ + + + + + VP + +D++ Sbjct: 5 EWVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRLMQLCKKNGVRFQVVPRKVLDQLF 64 Query: 106 GK---EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K VHQG+ + L ++A+ + L+++LD + DPHN+GA LRSA Sbjct: 65 AKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLRSAD 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S +A ++K A GA E +P ++NL ++K+ G G + + Sbjct: 125 AAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGTAGE 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L A+++GAEG G+R T+E + L M G++ +LNVS A V LY Sbjct: 185 ATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYE 244 Query: 276 TQNHF 280 Sbjct: 245 AVRQR 249 >gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittGG] gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG] Length = 246 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + L++VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S ++++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 247 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H ++A L ++I +L K RL NL ++ + +D Sbjct: 3 QQQDWLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLD 62 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K HQG+ P L LD + L+VLD V DPHN+GA+LRSA A Sbjct: 63 DK-SKGESHQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S S +A + K A GA + IP I+++NL L ++ +G + ++ Sbjct: 122 AGVDAVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + +AL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 182 RQSVFDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEI 241 Query: 277 QNHFA 281 Sbjct: 242 VRQRG 246 >gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] Length = 248 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K RL+ L V+ + +T+D+ Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL + LD + + L+VLD V DPHN+GA LRSA A Sbjct: 63 ADGEQ-HQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + V K A GA E +P + ++NL L+++ G IG + ++ Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IAL++GAEG G+R T+E ++ + M G + +LNVS A + L+ Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] Length = 246 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] Length = 289 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 113/277 (40%), Positives = 174/277 (62%), Gaps = 13/277 (4%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQ------------KSRHTSQPENLFLYGVHTVSAA 60 S S ++ + N R YKK + + + + ++ ++YG+HT+ AA Sbjct: 8 KSTGGSRWSPTQGNDRPYKKKRPDGKSSGGSFSKGKPWQKKSAAEDGPFYIYGLHTIEAA 67 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 NP RK +L+ T+NAL RL+ + NL PV+ P+ IDK+VGK+AVHQG AL Sbjct: 68 FKNPERKRHKLVVTQNALRRLE-ERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDA 126 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E VLAK+A Sbjct: 127 LPEYGPEELKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTA 186 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGAL+ I ++RI N++ +++M G+Q I L S+ + +E DK L+LG+EGKG+ Sbjct: 187 SGALDMIKHVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGV 246 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R +++ ++A L MPG IK+LNVSNAA ++LY+ + Sbjct: 247 REGVRKSCDTLARLDMPGEIKSLNVSNAAILSLYVAR 283 >gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae] Length = 255 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + +++ Q+ ++ R+ L + V + +D V Sbjct: 7 IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMD--VWV 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L+ LD + L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YDQDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 276 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 14/275 (5%) Query: 16 KDSHYA-------KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRK 67 +DSH KL R +++ Q + R S L+LYG+H+V AAL NP+R+ Sbjct: 4 RDSHGKAGNGGRHKLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARR 63 Query: 68 IFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 + +L+ T+ A L LPHP+P++ + +D+++G+ VHQG+AL+ PL+ P+ Sbjct: 64 LRRLVVTEEGEAALA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121 Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L DA++ ++VLD + DP N+GAILRSA AF +I +R +P E LAK+ASGAL Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243 E IP +R N+ AL + + G +GL + L I N + AL+LGAEG+GLR Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ET + L MPG +++LNVS AAAVALY Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 245 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++YG+H V A L+ + + K RL N + ++ + +T+D+ Sbjct: 3 NEYIYGIHAVKAVLSREPERFIEAFVLKGRQDDRLLPILNELNVCGVSIQQMTRKTLDEK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P L LD + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 AS-GANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 12/281 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + K + + K + + +++ K N KS + + G + V AL Sbjct: 16 EDKDKSVTESKGKAKSYNQVKNKNKKDNMVGNDKSTSAIEEREDIVIGRNAVIEALR-GE 74 Query: 66 RKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 R I L + + L + + +K V + +D + G E VHQG+ + P Sbjct: 75 RTIEALYISNSKLEGSIKTIVGLAKENKILIKEVDKRKLDSMCGGE-VHQGVIAKVTPYK 133 Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + + + +++LD V DPHN+G+I+R+A F GII KR S S S Sbjct: 134 YSEVSDILDLAEKRGEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSASVSTT 193 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + KS+ GA+EH+ +++NL ++++ G G +++ Q A+I+G Sbjct: 194 VYKSSVGAIEHVKIAKVTNLNSTIEELKEKGIWIYGADIRAEEYSYQVDFGGPCAVIIGN 253 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 EG+G+ T E + + M G I +LN S A + +Y Sbjct: 254 EGRGISKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEV 294 >gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b] Length = 244 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A V+ Q +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P + P L + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGKNYQEGDLPDLLESIENPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica W22703] Length = 246 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + LL+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 245 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA LNN ++ ++ A K RL N H ++ V QT+DK Sbjct: 5 IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLGITIQFVNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L LD + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +A+ K A GA E +P IR++NL L+++ +G + ++ L Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] Length = 248 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATGLVVQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L A S L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 246 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] Length = 246 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLESVDMPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] Length = 273 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 115/242 (47%), Positives = 156/242 (64%), Gaps = 1/242 (0%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +R LYG HTV+AAL NP R+I +L T+NA +L D N+ + V P Sbjct: 30 ARERDPDGPAILYGWHTVTAALANPERRIRKLWLTENAARKLA-DENIDTKVTPEIVRPG 88 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ID+ +G +AVHQG+ E PL SP +D + +++VLD + DPHN+GAILRSA AF+ Sbjct: 89 EIDQRLGPDAVHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+TT R+SP + VLAKSASGALE +P + + NL+ AL +++ GF T+GL S+ Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSAD 208 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L ++ +AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALYI + Sbjct: 209 LAAVELHEPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASR 268 Query: 280 FA 281 Sbjct: 269 LG 270 >gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 246 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 ++ +LYG+H + A + ++ +L K + + V+ +T+D Sbjct: 2 AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINSIINHARKFGIAVQFCQRKTLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 V E HQG+ + P LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKVNGEQ-HQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 121 AGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IAL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 181 TQSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEI 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] Length = 245 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104 + +YG+HTV A L + + K RL + + ++ V +T+D Sbjct: 3 SELIYGIHTVKALLEQAPERFLEAWVLKGRDDDRLQPLLAILQQYGVSIQYVQRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A+HQG+ L LD + + +VLD V DPHN+GA LR+A A Sbjct: 63 A-EGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S S + K A GA E +P+I+++NL L+++ G +G + ++ Sbjct: 122 VHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 DVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102] gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102] Length = 249 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 281 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 1/252 (0%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+ + + + LYG HTVS AL NP+R+ ++LAT+NA RL + P P Sbjct: 29 KRKGGPGRPPAWEGENDVALLYGWHTVSEALANPARRFRKILATENAANRLQEE-GFPLP 87 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V P IDK++G +AVHQGL E L SP L V S L++VLD + DPHN+GAI Sbjct: 88 VAPEIVRPSEIDKLLGSDAVHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAI 147 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF+ I+TT R+SP + VLAKSASG LEH+P+ ++NL AL+++ + G + Sbjct: 148 VRSAAAFAVGAIVTTARHSPVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVV 207 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL S+ LE +AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA Sbjct: 208 GLDSEGPADLEDTAMRPPMALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAA 267 Query: 271 VALYITQNHFAK 282 ++L I + + Sbjct: 268 LSLGIARRALKR 279 >gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] Length = 250 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 253 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 259 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+A A D Sbjct: 77 E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 135 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 136 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 196 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254 >gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 251 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] Length = 245 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P L LD + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae Sd197] gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 243 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2] Length = 245 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ +++ K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 V E HQG+ P + LD + + LL+VLD + DPHN+GA LR+A Sbjct: 62 DKVNGEQ-HQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADG 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S S + + K A GA E IP I+++NL L+ + G +G + ++ Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGET 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L + AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 181 DKTLYDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEI 240 Query: 277 QNHFA 281 Sbjct: 241 VRQRG 245 >gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 253 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL AL+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 259 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+A A D Sbjct: 77 E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 135 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 136 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 196 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254 >gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 252 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + R+ L + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1] Length = 255 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] Length = 261 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL ++++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Neisseria meningitidis H44/76] gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis CU385] Length = 261 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 15/263 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDAN 86 YKK + K+ + G + V AL + + I Q+ + ++ + Sbjct: 5 YKKSTNLTDKTEFR----EDLIEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAKA 60 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139 VK V + +DKI A HQG+ + P ++ + + + ++VLD Sbjct: 61 KEKHIVVKQVDRKKLDKISQTGA-HQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVLD 119 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN GAI+R+A GII KR + + V+ KS+ GA E++ +++NL + Sbjct: 120 EIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTTI 179 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +K+ G G + ALI+G+EG+G+ T+E + + M G Sbjct: 180 EKLKKDGIWVYGADMSGENYCFDVDFKGPAALIIGSEGRGIAKLTKEKCDVLVKIPMVGR 239 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 + +LN S A + +Y K Sbjct: 240 VSSLNASVAGGILMYEILKQRIK 262 >gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] Length = 320 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 29/298 (9%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHT 56 ++SE+ +K L R +KK + K R QP +N +YG H Sbjct: 11 TRESERPQPIKIKGKRVLSHPIRTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHP 70 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTIDKIVGKE 108 V +AL + R + +L T +RL +D H + V P+ +D+I Sbjct: 71 VLSALESH-RNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT-NG 124 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+A + AP L+ + + +++V D + DPHN+GAI+R+A A G+ Sbjct: 125 GNHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGL 184 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R + ++ + K A+GALE+ R+ NL+ AL+++ GF G ++ +PL Sbjct: 185 VIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHS 244 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G+EG+GL TQ++ + + + G +LN S A +ALY Sbjct: 245 VRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQR 302 >gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 17/282 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 + + + + H + RR+ + + L+LYG H V AAL N +R Sbjct: 29 SEGDTMNHRESRHKSAPRRDP-------AKGGERPAKLPSNQLWLYGAHAVLAALANKAR 81 Query: 67 KIFQLLATKNALARLDWDANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLL 122 KI +++ T AL +T Q +D+++ AVHQG+A+ L Sbjct: 82 KIRRIVLTVEALRSHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLE 141 Query: 123 SPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 SP ++ + R+ ++MVLD V DPHN+GAILRSA AF ++ T R+SP E+ L Sbjct: 142 SPGIEDIGRLAQNRDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTL 201 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AKSASGALE +P +R++N+ AL+++ GF T GL+ ++ + L Q + KIAL++GAE Sbjct: 202 AKSASGALEVMPLVRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAE 261 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+GLR T+E + L M ++++LNVSNAAA++LY Sbjct: 262 GEGLRRLTREHCDHLVKLPMSDLVESLNVSNAAAISLYELAR 303 >gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] Length = 243 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P P L A + ++LD V DPHN+GA LRSA A Sbjct: 62 -SEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] Length = 273 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 114/242 (47%), Positives = 154/242 (63%), Gaps = 1/242 (0%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +R LYG HTV+AAL NP+R+I +LL T+NA +L D N+ V P Sbjct: 30 ARERDPDGPAILYGWHTVTAALANPARRIRKLLLTENAARKLA-DENINTRITPDIVRPG 88 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ID+ +G +AVHQG+ E PL SP +D + +++VLD + DPHN+GAI+RSA AF+ Sbjct: 89 EIDQRLGPDAVHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+TT R+SP + VLAKSASGALE +P + ++NL AL ++ G+ T+GL S+ Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSAD 208 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L +AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALYI + Sbjct: 209 LAAVELRQPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASR 268 Query: 280 FA 281 Sbjct: 269 LG 270 >gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 253 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] Length = 245 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIGVSIQQMNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P L LD++ LL++LD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G G + ++ Sbjct: 122 VAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIAGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q + +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas entomophila L48] Length = 247 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ R+ L V+ + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S +AV+ K A GA E IP + ++NL+ L+K+ G +G + ++++ + Sbjct: 125 AVVIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 Query: 281 AK 282 K Sbjct: 245 QK 246 >gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] Length = 252 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 E +++G + V AL R I ++ + +L + + + VP + +D Sbjct: 3 QELEYIFGKNPVLEALR-GKRPINKIWIAEGSLRGPMIQVLELSKEKKINTQIVPKKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V K+ HQG+ + A +D + ++LD + DPHN+G+ILR+A Sbjct: 62 QMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHNLGSILRTAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S + +AK+++GA+EH+P R++NL + ++ G +G + Sbjct: 122 AVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEGLWFVGTDAK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + + + L++G+EG+G+ +E + + + G + +LN S AA++ +Y Sbjct: 182 GEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNASVAASLLMYE 241 Query: 276 TQNHF 280 Sbjct: 242 VYRRR 246 >gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708] Length = 323 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 31/306 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENL 49 +N+ + K + +K H+ + +SF+ K R + Q E+ Sbjct: 8 INITGETKRVQPIKIKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESD 67 Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101 +YG H V +AL N R + +L T ARL +D H + V P+ + Sbjct: 68 LIYGRHPVLSALEN-QRGLNRLWIT----ARLRYDPRFHHLILQAKDNGTVIDEVEPKRL 122 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 D+I A HQG+A + AP L+ + +++V D + DPHN+GAI+R+A Sbjct: 123 DQITD-GANHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAE 181 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ +R + ++ + K A+GALE+ P R+ NL+ AL+++ G+ G ++ Sbjct: 182 AIGSQGLVIPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAA 241 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +P+ + L++G+EG GL TQ + + + + G +LN S AA +ALY Sbjct: 242 GSEPIHTVKFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYE 301 Query: 276 TQNHFA 281 + Sbjct: 302 IYRQRS 307 >gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] Length = 297 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 120/280 (42%), Positives = 167/280 (59%), Gaps = 4/280 (1%) Query: 3 LISKKKSEKIFSLKDSHYA-KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 ++S++ + F + A K R + + ++ P + LYG HTVS AL Sbjct: 17 VMSERDRKSPFRRQGGKSAGKFTGKPRGFDRPHGRWERDSDADGP--VILYGWHTVSLAL 74 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NP R+I +L T+NA RL D ++ + V P ID+ +G +AVHQGL E PL Sbjct: 75 ANPKRRIRKLYLTENAARRLA-DEHIETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPL 133 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 SP +D + +++VLD + DPHN+GAILRSA AF I+TT R+SP + VLAKSAS Sbjct: 134 PSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHSPEATGVLAKSAS 193 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GALE +P I + NL AL +++ GFQT+GL S + +AL+LGAEGKGLR Sbjct: 194 GALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAVTLRQPLALVLGAEGKGLR 253 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+ET +++A L MPG IK+LNVSNAA +ALY+ + Sbjct: 254 QLTRETCSAVARLDMPGAIKSLNVSNAAVLALYVGASRLG 293 >gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] Length = 245 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA LN ++ ++ K RL N H V+ V QT+DK Sbjct: 5 IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L LDA+ + S LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKPL 220 +I K S S++ K A GA E IP IR++NL L+ + +G + ++ + L Sbjct: 124 VIVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 245 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 F+ G H+V AL + R I ++ +NA + H V+TV + +D++ Sbjct: 2 EEFIGGKHSVLEALRSG-RTINKIWIAENAGKQQAGSVLSEAKKHGIIVQTVDRRKLDQM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ + A +++ + N +++LD + DPHN+G+ILR+A Sbjct: 61 A-EGIQHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S +A ++K+++GA+E++P R++NL ++++ G G + Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + IAL++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVA 239 Query: 278 NHFA 281 + Sbjct: 240 RQRS 243 >gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] Length = 247 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K + D V+ + + +D Sbjct: 3 NELIFGFHSVEAILAKEPERFLEIYALKGRDDKRLTPIIDEARKFGISVQFMQRKALDNK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ HQG+ LD + + L+VLD + DPHN+GA LRSA A Sbjct: 63 -SKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] Length = 244 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L+ ++ ++ K RL N V+ V Q +D V Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKVQG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + P L LD + + + L++LD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 QVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241 >gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 243 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+ + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella tarda FL6-60] Length = 247 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + AVHQG+ P L L + + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 GVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 HSLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 240 Query: 278 NHFA 281 + Sbjct: 241 RQRS 244 >gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 247 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K + + V+ + + +D Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDNK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ HQG+ LD + ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 A-KDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLR 241 Query: 279 HFAK 282 A+ Sbjct: 242 QRAE 245 >gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTV--PPQTIDKIVG 106 ++G H V+A L + + + ++ T R+ V+ + Q + +VG Sbjct: 1 MIFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVG 60 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 61 TRR-HQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A AK ASGA E +PYI ++NL L+ + G IG + D+++ L Sbjct: 120 VIAPKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLY 179 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q ALI+G+EG+G+R T ET + H+ M G +++LNVS A+ V L+ + Sbjct: 180 QGDFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQR 238 >gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19] gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11] Length = 250 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] Length = 246 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ + + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] Length = 240 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 1 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-S 59 Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 60 DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 180 CQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 Query: 281 A 281 + Sbjct: 240 S 240 >gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC 3083-94] gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC 3083-94] Length = 243 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 119/254 (46%), Positives = 165/254 (64%), Gaps = 1/254 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R+++ + +K+R TS LYG HTV+AAL NP R+I +LL T+NA RL + N+ Sbjct: 28 RNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPRRRIRKLLVTENAARRLTHE-NI 86 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + V P ID+ +G +AVHQGL E PL SP ++ + +++VLD + DPHN+ Sbjct: 87 DTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIETLTQEGIVLVLDQITDPHNV 146 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA AFS I+TT R+SP + VLAKSASGALE +P + + NL AL ++ GF Sbjct: 147 GAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALEIVPLVLVQNLARALAGLNDRGF 206 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+GL S + L + +AL+LGAEGKGLR T++T +++A L MPG IK+LNVSN Sbjct: 207 MTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTRDTCSAVARLDMPGHIKSLNVSN 266 Query: 268 AAAVALYITQNHFA 281 AA +ALYI + Sbjct: 267 AAVLALYIGASRLG 280 >gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] Length = 245 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLECEPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P L LD + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ + Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91] Length = 260 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 9/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTV--PPQTIDKIVG 106 +++G H +++ L I ++ T R NL + + + K+ G Sbjct: 6 YIFGFHAITSRLRQHPDSIKEIYLDTNRQDQRARDLMNLAETTSSRLILCNQDRLCKMTG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A L L LD + L+VLD V DPHN+GA LR A AF Sbjct: 66 TTR-HQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 125 VIVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLD 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IA +LGAEG+G+R T+ET + + M G I++LNVS +A + L+ T Sbjct: 185 SITLTRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQ 242 >gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 249 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 +N ++G H V++ L + + + +L R D + +DK Sbjct: 2 KNKVIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDK 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ AP+ L LDA+ + LL+VLD + DPHN+GA LR A + Sbjct: 62 MVGTRR-HQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A + K ASGA E +PYI ++NL L+++ +G + D+++ Sbjct: 121 AHAVIAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEE 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + + +A ++G+EG+G+R T+E + + M G +++LN+S A+ + LY + Sbjct: 181 SLYEPDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] Length = 246 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKI 104 + ++G+H V L ++ ++ K RL L + ++ V +D Sbjct: 3 DEIVFGIHAVKNLLKRSPERVREIFLQKGRDDERLMDIVQLANKNSINLQAVKKTVLDDR 62 Query: 105 VGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ P+ S LD++ L+VLD V DPHN+GA LR+A A Sbjct: 63 A--QGNHQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + +A ++K A GA E +P+ +++NL ++++ G G + ++ Sbjct: 121 GVHGVIAPKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEAS 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + IA+++GAEGKGLR T+E + ++ M G + +LNVS A V L+ Sbjct: 181 ESVFKTDLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEAV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179] gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179] Length = 245 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA L+ + ++ K RL N H V+ + Q +DK Sbjct: 5 IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + P T + + + LL+VLD V DPHN+GA LR+A A D Sbjct: 65 E-THQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I + S ++V K A GA E +P IR++NL L+ + + +G + ++ + Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQR 243 >gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] Length = 250 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 247 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + P L LDA+ + + L++LD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ + Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244 >gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640] gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06] Length = 250 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLAKEPERFVEAFVLKGRQDDRLMPILNELQMCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P L LD + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++G H V++ + + + + ++ R D A + Q + +VG Sbjct: 5 MIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLAAMVG 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + A L L LDAV LL++LD + DPHN+GA LR A Sbjct: 65 TRR-HQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A K +SGA + +PYI ++NL ++ + G IG S D++K L Sbjct: 124 VIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL++G+EG+G+R T+ET + ++ M G +++LNVS A+ V LY + Sbjct: 184 EGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQR 242 >gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 253 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH + A L + +++ + + R+ +L + + + +D V Sbjct: 7 IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 256 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 11/252 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKT 95 K+ P + +YG+H V++ L N ++ ++ K RL N V+ Sbjct: 3 KNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQF 62 Query: 96 VPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGA 149 V QT+DK E VHQG+ L LD + + + LL+VLD V DPHN+GA Sbjct: 63 VNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGA 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQ 208 LR+A A +I K S +++ K A GA E +P IR++NL L+ + Sbjct: 122 CLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G + ++ + + Q +AL++GAEG+G+R T+E + + M G + +LNVS A Sbjct: 182 VVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVA 241 Query: 269 AAVALYITQNHF 280 V L+ Sbjct: 242 TGVCLFEIVRQR 253 >gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2] gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2] Length = 249 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N A+ D + VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V + HQG+ + A LD + ++VLD + DPHN+G+I+R+A Sbjct: 62 QMVSGQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 VYRKRS 245 >gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 250 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580] gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580] Length = 249 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N A+ D + + VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V + HQG+ + A LD + ++VLD + DPHN+G+I+R+A Sbjct: 62 QMVSGQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 VYRKRS 245 >gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 259 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 113/254 (44%), Positives = 158/254 (62%), Gaps = 1/254 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +R ++ +S + + + + LYG H V+ AL NP R + +LLAT+NALARL Sbjct: 4 KRTAPRDRRHRSGADRRAAPAGDDRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P + V P I +VG +AVHQGL LE PL +P D + +L+ LD + D Sbjct: 64 ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A AF+ I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL + Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF IGL S++ PL+Q + ++LGAEGKGLR +T+E MA L PG IK+L Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242 Query: 264 NVSNAAAVALYITQ 277 NVSNAAA+ LY Sbjct: 243 NVSNAAAITLYALA 256 >gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis H44/76] Length = 250 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] Length = 244 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H VSA + + ++L K+ + D V ++K G Sbjct: 3 ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L L +D + LL+VLD V DPHN+GA LRSA A Sbjct: 63 -HKQHQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S + V++K A GA E IP I ++NL L+++ G IG + ++ L Sbjct: 122 VVLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 N IA +LGAEG G+R T+E + + M G +++LNVS A++V L+ T Q Sbjct: 182 DADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQ 241 Query: 280 FAK 282 F+K Sbjct: 242 FSK 244 >gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810] Length = 246 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + + P +T+ + Sbjct: 9 QNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVSISWTPKKTLSDMT 68 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L + LD++ + L+++LD +NDPHN G+ILR+A A + Sbjct: 69 -NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHNFGSILRTADATNV 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + P Sbjct: 128 TGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG-TP 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K+ALI+G EGKG+ P ++ M + M G +++LN S AAAV +Y H Sbjct: 187 SHKWNTAGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 246 >gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] Length = 246 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ + + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] Length = 286 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 13/281 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPS 65 +++ K + +D + + N R+ K + S S + + G + V AL Sbjct: 2 RENTKAGNKRDKNRENNKGNKREINKNRVVENNSYDNSFEEREDIIIGRNAVLEALK-AE 60 Query: 66 RKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 R I L + + L +K V + +D + AVHQG+ P Sbjct: 61 RTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARVTPYE 119 Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + + + +++LD V DPHN+G+I+R+A F GII KR S S + + Sbjct: 120 YSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTM 179 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + KS+ GA+EH+ R++NL + ++ G G +++ Q A+I+G Sbjct: 180 VYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGACAIIIGN 239 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 EGKG+ T + + + M G I +LN S A + +Y Sbjct: 240 EGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 280 >gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida W619] Length = 248 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ R+ L V+ + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P +L L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVVVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244 >gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] Length = 246 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++ K RL N ++ V QT+D + Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNK-SQ 63 Query: 108 EAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ + P L LD A ++ LL++LD V DPHN+GA LR+A A D Sbjct: 64 GEVHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRTADATGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 184 YEAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQ 242 >gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] Length = 246 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVP--PQTID 102 P F++G H V++ L I ++ R L + + + Sbjct: 2 PSTRFIFGFHAVTSRLRQNPNSIREIFIDATRTDQRAQELIKLAENKNIHVISCTGSKLT 61 Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + HQG+ + LD + L+VLD + DPHN+GA LR A AF Sbjct: 62 SMSGNDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLRVADAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K + + + K +SGA + +PYI ++NL L+++ G G + D+ Sbjct: 121 GVHAVIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGTAEDAA 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + +A + G+E KGLR T+E + + M G I++LNV+ +A + L+ T Sbjct: 181 HDLTHFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETH 240 Query: 278 NH 279 Sbjct: 241 RQ 242 >gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] Length = 249 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 11/240 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ +I L ++ R + L V + +D +V Sbjct: 7 YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLV-PG 65 Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L LD ++ LL++LD V DPHN+GA LR+A A G Sbjct: 66 VRHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K ASGA E +P++R++NL ++K+ G +G L Sbjct: 126 VIAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L+LGAE +GLR T E + + M G + +LNVS AA V L+ Q Sbjct: 186 NTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRG 245 >gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 250 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] Length = 251 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 140/242 (57%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-----VPPQTIDKI 104 +YG+H V+AA NP R+ L T++ALA LD ++ + + +DK+ Sbjct: 10 LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDPTFLEKEELDKL 69 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+AL+TAPL ++ V L++VLD V DPHN+GAI+RSA AF Sbjct: 70 LPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAFG 129 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I R++P + VLAK+ASGA++ +P +R++NL AL + GF T+GL + Sbjct: 130 ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGAR 189 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + + AL+LG+EG+GLR T E +A L G + +LNVSNAAAVALY Sbjct: 190 PLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVAR 249 Query: 279 HF 280 Sbjct: 250 RR 251 >gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491] gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491] Length = 250 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 245 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 8/240 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIV 105 + G + V AL + L++ N ++ +L P+K V + +D+I Sbjct: 3 EDLIIGRNAVVEALESHKTLESILISKGNNKGTINKIISLAKENRIPIKNVDKKKLDEI- 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+A T P +++ + + +++LD + DPHN GAI+R+A F D Sbjct: 62 SEGENHQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S + ++ KS+ GA+EH+ +++N+ + + G + + + Sbjct: 122 GIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKENNIWIYGADMATDRYI 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E IAL++G+EGKG+ T+E + + M G I +LN S A + +Y Sbjct: 182 YSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQR 241 >gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 249 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104 +YG+H VSA L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELDALGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ L + L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + + ++ K A GA E +P I+++NL +L+++ G +G + Sbjct: 122 DAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM 10] gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125] gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Angola] gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1] gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003] gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10] gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001] gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953] gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516] gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua] gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92] gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F] gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125] gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis IP 31758] gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis Angola] gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis YPIII] gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis PB1/+] gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004] gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038] gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003] gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 246 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 249 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + S LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus YJ016] gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio vulnificus CMCP6] gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016] gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] Length = 247 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104 N F+YG+H V A L+ + + K RL N V + + +T+D Sbjct: 3 NEFIYGIHAVRAVLDKEPERFIEAYVLKGRQDDRLMPILNELQMVGVSLQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P L LD + S LL++LD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] Length = 249 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] Length = 246 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++ K RL N ++ V QT+D + Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNK-SQ 63 Query: 108 EAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ + P L LD A + LL++LD V DPHN+GA LR+A A D Sbjct: 64 GEVHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YDAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQ 242 >gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CMR15] Length = 249 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ + Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244 >gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] Length = 250 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] Length = 246 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 246 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] Length = 248 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA-TKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H+V +AL+ +KI + ++ RL D L + V + +D+ + Sbjct: 6 IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRLTQLIDDLLDLGIEPEKVDRKKLDRFA-E 64 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E L + + + L +VLD+V DPHN GA LR+A A Sbjct: 65 GNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATGVH 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I TK + + + K ASGA E +P +++NL+ L+ + G +G + ++ + Sbjct: 125 GVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQTA 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEGKGLR T+E + L M G +++LN+S A V LY T Sbjct: 185 YQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQR 244 >gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 E+ ++G H V+A + + + ++ K+ AR + + V + +D Sbjct: 2 AESRIIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLD 61 Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + HQG+ L LD + LL+VLD V DPHN+GA LRSA AF Sbjct: 62 GMAG-NSRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K + +A + K A GA + +PYI ++NL L+++ IG+ +++ Sbjct: 121 GVHAVIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L +A +LGAEG+GLR T+ET + + M G +++LNVS + V LY + Sbjct: 181 TNLYDVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEAR 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] Length = 246 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107 +YG+H V++ L N ++ ++ K RL N V+ V QT+DK Sbjct: 5 IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] Length = 244 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 10/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L+ ++ ++ K RL N V+ V Q +D Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKAQG 64 Query: 108 EAVHQGLAL---ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + L LD + + + L++LD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 QVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241 >gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittEE] gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE] gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240013] Length = 250 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3] gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3] Length = 247 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] Length = 251 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 16/249 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDK 103 ++ +YG+H V A ++ ++I L K RL ++ V+TV + +D Sbjct: 4 DDDIVYGLHAVQALVDGSPQRIQTLWLLKGRNDQRLQSIRSVAEKSRITVRTVAREKLDG 63 Query: 104 IVGKEAVHQGLALET--------APLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILR 152 +V E HQG+ L L ++ S ++VLD V DPHN+GA LR Sbjct: 64 MV--EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGACLR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A +I K S S + + K A GA E +P +R++NL+ L+ + S G +G Sbjct: 122 SAEAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGA 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++++ Q +A+++GAEGKGLR T+E S+ + M G + +LNVS A+ + Sbjct: 182 AGEAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGIC 241 Query: 273 LYITQNHFA 281 L+ + Sbjct: 242 LFEALRQRS 250 >gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] Length = 247 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETA---PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ L +D + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] Length = 249 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 124/246 (50%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V + HQG+ + A LD + +VLD + DPHN+G+I+R+A Sbjct: 62 QMVSGQ--HQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 IYRKRS 245 >gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] Length = 249 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866] Length = 246 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + H+ +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] Length = 245 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12J] Length = 250 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R ++ V Q +D+ Sbjct: 2 SEIIYGIHAVQALLERDPQRFLDVYLLKGRDDRRLQPLLQQLENAGIVIQMVSRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L + + LL+VLD V DPHN+GA LR A A Sbjct: 62 A-EGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + + +A K ASGA E +P IR++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS AA V+L+ Sbjct: 181 HLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3] gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3] Length = 246 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102 + ++G+H V A L + +I +L + RL F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis OX99.30304] gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M6190] gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M13399] gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M0579] gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis ES14902] gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis 961-5945] gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis G2136] gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M04-240196] gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis NZ-05/33] Length = 250 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 244 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L + + ++ K RL ++ + +D Sbjct: 3 NDMIFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V K A HQG+ P LD + + S LL++LD V DPHN+GA LR+A A Sbjct: 63 V-KGASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 AVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12D] Length = 250 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L LD + + LL+VLD V DPHN+GA LR A A Sbjct: 66 TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q IA+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 185 QADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K+R ++ N +YGVH V+ +L N K++ + + + +P Sbjct: 2 KNREFNET-NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWMP 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 +T++ + AVHQG L + LD A + L+++LD +NDPHN G+IL Sbjct: 61 KKTLNDMT-NGAVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G Sbjct: 120 RTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV Sbjct: 180 TDMNG-TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAV 238 Query: 272 ALYITQNH 279 +Y H Sbjct: 239 LMYEVFRH 246 >gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] Length = 276 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 16/276 (5%) Query: 21 AKLRRNHRDY--KKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 ++N +D ++++ N SR+TS+ + G + V L + R + Q+L Sbjct: 2 KDTKKNFKDNSNRRIEKDNNFSRNTSEKSFREDLIEGRNAVIEVLKS-ERTVEQILVANG 60 Query: 77 ALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 ++ L +K V + +D++ A HQG+ + P +D + Sbjct: 61 DVSGSINLILALAKEKKVVIKQVDRKKLDQLSQTGA-HQGVIAQITPYKYCDVDDIISYA 119 Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +++LD + DPHN G+I+R+A GII KR + + + K++ GA+EH Sbjct: 120 EEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIEH 179 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +I+N+ +A+ K+ G G + + +ALI+G+EGKG+ T+ Sbjct: 180 MKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKLTKN 239 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G I +LN S A + +Y K Sbjct: 240 KCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFK 275 >gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 244 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L + + ++ K RL ++ + +D Sbjct: 3 NDMIFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V K A HQG+ P LD + + + LL++LD V DPHN+GA LR+A A Sbjct: 63 V-KGASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 AVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 246 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P L LD + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-KGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P IR++NL ++ + G +G + ++ + Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR] gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 248 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H V A L N ++ +L +K R + + VP Q ++K + Sbjct: 7 VFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALEKRA-E 65 Query: 108 EAVHQGLALET-APL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P L L+ + + L ++LD V DPHN+GA LR+A A Sbjct: 66 GGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADAAGVT 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + + K ASGA E++P + ++NL AL+ + G G + ++ + + Sbjct: 126 GVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEATQSV 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++GAEGKG+R T+ET + + + G + +LNVS A+ V L+ Sbjct: 186 YDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEVVRQR 245 Query: 281 A 281 Sbjct: 246 N 246 >gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto BEST195] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus oremlandii OhILAs] Length = 250 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + R+I ++L T+ P++ V Q ++++ Sbjct: 6 IAGRNPVMEALKSG-REIDKILIAKGTEGGSLIKIIGKAKDRGIPIQYVERQKLNEMSSS 64 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + VHQG+ A ++ + + L++LD + DPHN+G+++R+A A D Sbjct: 65 D-VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMDPHNLGSMMRTADAVGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S ++ +AKS++GA+E++P ++SN+ + K+ G G K Sbjct: 124 GIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIKDMGIWVAGADMSGSKEH 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G EG+G+ +E + L M G + +LN S AAAV +Y Sbjct: 184 YNMDLKGPLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis MR-1] gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis MR-1] Length = 246 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102 + ++G+H V A L + +I +L + RL F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 EKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K+R ++ N +YGVH V+ +L N K++ + + + P Sbjct: 2 KNREFNET-NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWTP 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 +T+ + AVHQG L + LD + + L+++LD +NDPHN G+IL Sbjct: 61 KKTLSDMT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G Sbjct: 120 RTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV Sbjct: 180 TDMNG-TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAV 238 Query: 272 ALYITQNH 279 +Y H Sbjct: 239 LMYEVFRH 246 >gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] Length = 246 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H++ A L+N ++ ++ K R + ++ + +D Sbjct: 2 SEIIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEATGLVIQVASRKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V ++ HQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVR 240 Query: 279 HFA 281 A Sbjct: 241 QRA 243 >gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] Length = 252 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H V +AL + + +++ K R ++ P +D++V Sbjct: 5 IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLARNQGVTIERRPRTELDRLV-- 62 Query: 108 EAVHQGLALETAPLLS-PTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ E P LD ++ LL+VLD V DPHN+GA LRSA A Sbjct: 63 DGRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + + K A GA E +P++R++NL L + + G +G + D+++ Sbjct: 123 VTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAEQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + IAL++GAEG+G+R TQE + +L M G + +LNVS A V L+ Sbjct: 183 SLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVR 242 Query: 279 HFA 281 + Sbjct: 243 QRS 245 >gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4] gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4] Length = 246 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102 + ++G+H V A L + +I +L + RL F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia psychrerythraea 34H] Length = 251 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 14/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104 ++G+H V+A +N + ++ K R+ NL + + + + +D+ Sbjct: 5 EELVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALDEK 64 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGAILRSA 154 E HQG+ P S T + + + + ++LD V DPHN+GA LR+A Sbjct: 65 SEGEQ-HQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRNA 123 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A II K + + + K A GA+E +P ++++NL+ ++++ G +G + Sbjct: 124 DAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTAG 183 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L + +AL++GAEGKG+R T+E + L M G + +LNVS A + L+ Sbjct: 184 ETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICLF 243 Query: 275 ITQNHFA 281 + Sbjct: 244 EMVRQRS 250 >gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 245 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P L LD + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] Length = 246 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] Length = 247 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104 N +++G+H A L + ++ K RL N F ++ +P +T+D Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P L LD + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-KGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] Length = 264 Score = 259 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 128/262 (48%), Gaps = 14/262 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R K+ S +++ + Q FL+G+H V A + ++FQL K A RL L Sbjct: 3 RRGKQRSSGSKRGTKSPQ----FLFGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQAL 58 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVL 138 P + V Q +D V A HQG+ + L LD V N L++VL Sbjct: 59 ATQLGLPTQYVERQQLDDWVD-GARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVL 117 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DPHN+GA LRSA D +I K S +AV K A GA E P+I+++NL Sbjct: 118 DGVTDPHNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLART 177 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ + G +GL+ + L + + +AL++GAEG GLR T+E+ + + M G Sbjct: 178 LKGLAERGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGG 237 Query: 259 IIKALNVSNAAAVALYITQNHF 280 + +LNVS AA V LY Sbjct: 238 SVSSLNVSVAAGVCLYEVVRQR 259 >gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 250 Score = 259 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. MP688] Length = 249 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVK--TVPPQTIDK 103 ++ L+G H V + L + ++L K+ AR+ NL V+ V +D Sbjct: 3 DSRILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDG 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ P D + +VLD V DPHN+GA LR A A Sbjct: 63 MAGANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 123 MGVHAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY Sbjct: 183 PGNLFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEA 242 Query: 277 QNHFA 281 + Sbjct: 243 RRQRN 247 >gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] Length = 245 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + R+I ++ ++ + V+ VP + +D++V Sbjct: 2 DFIIGKNPVIEALKS-KRQINKIWIAESVQRHSIQPIIQLAKQNGVLVQYVPKKKLDQMV 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 61 --EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR S +A +AK+++GA+E+IP R++NL + ++ G +G + +K+ Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAKE 178 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYR 238 >gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + R+I ++ ++ + V+ VP + +D++V Sbjct: 2 DFIIGKNPVIEALKS-KRQINKIWIAESVQRHSVQPIIQLAKQNGVLVQYVPKKKLDQMV 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 61 --EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR S +A +AK+++GA+E+IP R++NL + ++ G +G + +K+ Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAKE 178 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYR 238 >gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus sanguinis SK408] Length = 242 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] Length = 249 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103 + F+ G + + AL + R + ++ + + + + V+ VP + +D+ Sbjct: 2 DREFITGKNPIIEALRSG-RPMNKIWIGEGSQKGQMQKVLELAKEQGVLVQHVPKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++G E HQG+ A +D + +VLD V DPHN+G+ILR+A A Sbjct: 61 LIGHE-NHQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPHNLGSILRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + + +AK+++GA+E++P +R++NL ++ + G IG + Sbjct: 120 AGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKRGLWFIGTDAKG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IAL++G+EGKGL +E + + M G + +LN S A ++ +Y Sbjct: 180 SEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEA 239 Query: 277 QN 278 Sbjct: 240 YR 241 >gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] Length = 250 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 F+YGVH VSA L NP R +L +++ + + D + ++ + Q +++ Sbjct: 5 FVYGVHAVSALLANPHRTTKKLFVSQDRVDKRLQDLVDKAVQARIGIEKLSTQQMNQRFA 64 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L L++ ++ L+++LD + DPHN+GA LR+A A Sbjct: 65 -EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S S + V++K A GA E +P +R++NL ++ + G G + +++ Sbjct: 124 DFVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEAEHS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IAL++GAEG+GLR T+E + L M G + +LNVS A V+LY Sbjct: 184 LYQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 277 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 18/276 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K + K R+N K KS + + G + V AL R I Sbjct: 4 KPKKTSNLTVKKDRKNEPLKKN------KSITCQEEREDIVIGRNAVMEALK-GDRTIEA 56 Query: 71 LLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + N L +K V + +D + E HQG+ + P + Sbjct: 57 IYVSNNKLEGSINAIMGMAKDQKILIKEVDKRKLDSMCDGE-THQGVIAKVTPFKYSEVS 115 Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD V DPHN+G+I R+A F GII KR S S +A + KS+ Sbjct: 116 DIFELAEQKGEAPFIVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKSS 175 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA+EH+ +++N+ ++++ G G +++ + + AL++G EG+G+ Sbjct: 176 VGAIEHVKVAKVNNINSTIEELKEKGVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRGM 235 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 T + + + M G I +LN S A + +Y Sbjct: 236 SKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEV 271 >gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 287 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 17/282 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPSR 66 EK + K R D K Q+ + S E L + G + V AL R Sbjct: 3 EKRQPNRKPRDFKGRDKKADTFKTHEKKQQEKPQSAQEELSGEMIAGKNPVLEALR-AGR 61 Query: 67 KIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 +I +L + + D V+ VP Q +DK+ HQG+ A Sbjct: 62 EINKLWIAEGVKKTGVQELMDLAKEQGVLVQFVPKQKVDKLA---ENHQGIVASVAAYDY 118 Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 LD + ++LD + DPHN+G+I+R+A A GII KR + +AV+ Sbjct: 119 AELDDLFAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVV 178 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+++GA+EH+P +R++NL + ++ G G + + +ALI+G+E Sbjct: 179 AKASTGAIEHVPVVRVTNLAQTVDELKDRGVWIAGTDAKGSADYRKMDATLPLALIIGSE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GKG+ ++ + HL M G + +LN S AAA+ +Y Sbjct: 239 GKGMSRLLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYR 280 >gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016] gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 256 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 11/252 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVP 97 + Q + G ++V ALN+ + I Q+ ++ + VK V Sbjct: 2 KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + +D+I + VHQG+ + P L+ + S +++LD + DPHN GAI Sbjct: 62 KRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 120 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A GII KR + + + KS++GA+E++ +++NL ++K+ Sbjct: 121 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 180 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + N IALI+G+EGKG+ T++ + + M G I +LN S AA Sbjct: 181 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 240 Query: 271 VALYITQNHFAK 282 + +Y K Sbjct: 241 MLMYEILKQKIK 252 >gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] Length = 247 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLGISIQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + P L LD + + + L++LD V DPHN+GA LR+A D Sbjct: 65 E-VHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRTADVAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E +P IR++NL ++++ +G + ++ + Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] Length = 249 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQNITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP +++NL+ AL +M G G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+ Q +AL++G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 180 AKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 252 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + AR+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPT-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7] gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7] Length = 246 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102 + ++G+H V A L + +I +L + RL F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL R+I +LL K A + V+ V Q +D+I Sbjct: 6 IEGRNPVLEALK-AGREIDKLLIAKGAEEGSMKKIIGMAKDQNIIVQYVERQKLDQISES 64 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ + A ++ + S +++LD + DPHN+G+I+R+A A D Sbjct: 65 HA-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPHNLGSIIRTADAVGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + +AV+AK+++GA+E++P ++SN++ + K+ G G K+ Sbjct: 124 GIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEKGVWVAGADMKGKQLH 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G EG G+ +E + L M G + +LN S AAAV +Y Sbjct: 184 FEADFKGALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQR 243 >gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 246 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 14/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQTID 102 N F+YG+H V+A L + + K L L+ A L ++ + + +D Sbjct: 3 NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARL--GISIQEMHRKALD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+ + P + + + LL+VLD V DPHN+GA LR+A A Sbjct: 61 DKA-QGANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGACLRNADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 120 AGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFVGTAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 180 THDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEA 239 Query: 277 QNHFA 281 + Sbjct: 240 VRQRS 244 >gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] Length = 279 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 14/276 (5%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNNPS-RKIF 69 +K+ + HR +K + N++ + + E+ F++G H V A+ K+F Sbjct: 1 MKNKQSKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNFVFGYHAVVEAIQQGRGNKLF 60 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +K PVK VP ++ + + VHQG+ L +L+ + Sbjct: 61 LQEDSKGEKIDKLKQLAQERSLPVKWVPKTKLE-MWSNQGVHQGMVLAITAYEYLSLNEL 119 Query: 130 RN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + ++LD + DPHN G+I R+A A DGII K S + V+ K+++G Sbjct: 120 LEQVKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTG 179 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A+E+IP R++NL+ + K+ F G +ALI+G EGKG+ Sbjct: 180 AVEYIPVARVTNLSQIIAKLKEQQFWIFGTDMTG-IDYRNWDATGALALIIGNEGKGISA 238 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ A + + M G +++LN AA + +Y Sbjct: 239 GLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYR 274 >gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 245 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPV--KTVPPQTIDK 103 ++ ++G+H V A + ++ +L K RL A L F V + + +D Sbjct: 2 KHEMVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVRPQLAARKVLDD 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ P + + L+VLD V DPHN+GA LRSA A Sbjct: 62 KA-ESTQHQGVVARCKPEPVKGEHELDQLLDGVDTPFLLVLDGVTDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K S S ++ K A GA E IP +++NL L+ + G +G + ++ Sbjct: 121 GVHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+ +GAEGKGLR T+E + + M G + +LNVS A + L+ Sbjct: 181 HTVYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] Length = 283 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 3/265 (1%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DSH K R + + R T LYG HTV+AAL NP R+I +LL T+N Sbjct: 19 DSHARKA--GDRKRPPGRGSARNGRETGADGPAILYGWHTVTAALANPRRRIRKLLLTEN 76 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL + N+ + V P ID+ +G +AVHQGL E PL SP +D + +++ Sbjct: 77 AARRLANE-NIETRLTPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIDTLAQEGIVL 135 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAI+RSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL Sbjct: 136 VLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 195 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S + L +AL+LGAEGKGLR T+ET ++A L M Sbjct: 196 RALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGLRQLTRETCNAVARLDM 255 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 PG IK+LNVSNAA +ALYI + Sbjct: 256 PGDIKSLNVSNAAVLALYIGASRLG 280 >gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp. subtilis str. 168] gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp. subtilis str. SMY] gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis] gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] Length = 242 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAADKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L+ + +++ LL++LD + DPHN+G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTSGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFR 239 Query: 279 H 279 + Sbjct: 240 N 240 >gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] Length = 270 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 13/253 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVP 97 + + + ++YG+H V L +I ++ + + + + V Sbjct: 13 KKITMSDLEWVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRLLNLCRENGIKANVVA 72 Query: 98 PQTIDKI---VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + ID++ + VHQG+A L ++ + L+++LD + DPHN+ Sbjct: 73 RREIDQLFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNL 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LRSA A ++ K S +A ++K A GA E +P ++NL ++K+ G Sbjct: 133 GACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGV 192 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ + + ++ A+++GAEG G+R T+E + L M G++ +LNVS Sbjct: 193 WIFGTAGEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSV 252 Query: 268 AAAVALYITQNHF 280 A + LY Sbjct: 253 ATGICLYEAVRQR 265 >gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] Length = 245 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + R+I ++ + + + V+ VP + +D++V Sbjct: 2 DFIIGKNPVIEALKS-EREINKIWIAEGVQRNSIQPIIQLAKQNGVLVQYVPKKKLDQMV 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 61 --EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR S +A +AK+++GA+E++P R++NL + ++ G +G + +K Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKERGVWIVGTDAKAKD 178 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL++G+EGKG+ E + HL M G + +LN S AA++ +Y Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVYR 238 >gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 255 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 247 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N ++ V QT+D + Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNK-SQ 63 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ P L L+A+ + + LL++LD V DPHN+GA LR+A A D Sbjct: 64 GEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S + K A GA E +P IR++NL ++ + +G + +++ + Sbjct: 124 VIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. Y412MC10] Length = 256 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 9 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP +D + L++LD + DPHN+G+ILR+A Sbjct: 68 QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 126 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 127 CTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 186 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 187 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 246 Query: 275 ITQNHF 280 Sbjct: 247 EVLRRR 252 >gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 243 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] Length = 250 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L +N A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLNTIA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G D + L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++G EG G+R T+E ++ + M G ++++N+S +A + + T+ Sbjct: 185 HYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETRRQR 243 >gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573] gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603] gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603] gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573] gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] Length = 246 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] Length = 246 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 17/242 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103 ++ G + V AL + R I ++ + A LDW V+ VP + +D+ Sbjct: 3 EYIIGRNPVIEALKSG-RDINKIWIAEGAHRHAVEPVLDWAKR--RGVIVQYVPKRKLDQ 59 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + E HQG+ + A +D + + +VLD + DPHN+GAI+R+A A Sbjct: 60 MA--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAPFFLVLDELEDPHNLGAIMRTADA 117 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + +AK+++GA+EHIP R++NL + ++ G G + + Sbjct: 118 VGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLARTIDELKERGVWVAGTDAAA 177 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 178 KDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 237 Query: 277 QN 278 Sbjct: 238 YR 239 >gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555] gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] Length = 280 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 11/252 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVP 97 + Q + G ++V ALN+ + I Q+ ++ + VK V Sbjct: 26 KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 85 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + +D+I + VHQG+ + P L+ + S +++LD + DPHN GAI Sbjct: 86 KRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 144 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A GII KR + + + KS++GA+E++ +++NL ++K+ Sbjct: 145 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 204 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + N IALI+G+EGKG+ T++ + + M G I +LN S AA Sbjct: 205 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 264 Query: 271 VALYITQNHFAK 282 + +Y K Sbjct: 265 MLMYEILKQKIK 276 >gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] Length = 247 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] Length = 253 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 247 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 251 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K+ R A V+ Q +D Sbjct: 2 DEMIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQ 61 Query: 105 VGKEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V VHQG+ + L L A + LL++LD V DPHN+GA LRSA Sbjct: 62 V-NHEVHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K +S +A + K ASGA E +P I ++NL L+ + +G + Sbjct: 121 DAAGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAG 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D+++ L Q +AL++G+EG+G+R T+E + + + G + +LNVS A V L+ Sbjct: 181 DAEQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLF 240 Query: 275 ITQNHFA 281 Sbjct: 241 EVTRQRN 247 >gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK49] Length = 242 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 247 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18] Length = 249 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103 + +YG++ AL SRKIF+L +A RL+ L PV+ +++ Sbjct: 3 KEEIIYGLNPAMEALR-GSRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G E HQG+AL+ P LD V + L++VLD V DPHN+GA++RSA Sbjct: 62 LCGTE-HHQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAACA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + ++ K + +AV+ K+++GA E + +++N++ AL+ + GF G +K Sbjct: 121 GANAVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSAK 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q+ +AL++G EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 181 HTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEVV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] Length = 254 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 8/247 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99 + +P +YG H V A L + + ++ ++A AR + V Sbjct: 2 SEKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARARDLVHQARDSGVKLAQVEAD 61 Query: 100 TIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + ++VGK A HQG+ P+ L L+++ LL++LD V DPHN+GAILRSA Sbjct: 62 RLGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGAILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF +I K + +A + K ASGA + +PY+ ++NL ++++ I Sbjct: 122 DAFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWVIAADM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D ++PL +A +LGAEG G+R ++ +A + + G +++LNVS +AA+ LY Sbjct: 182 DGEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLY 241 Query: 275 ITQNHFA 281 T Sbjct: 242 ETARQRG 248 >gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 272 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 125/270 (46%), Positives = 170/270 (62%), Gaps = 7/270 (2%) Query: 16 KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 K+ HYA L+ RD K + + ++ + + LYG HTV+AAL NP R L Sbjct: 3 KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQGTIRLYGFHTVNAALKNPKRVFGHL 62 Query: 72 LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 T NAL RL+ ++LP + P+ +D +VG +AVHQG+ LET L L + Sbjct: 63 YITLNALKRLNIPKSDLPCSVTLY--SPKQLDSLVGSDAVHQGIILETESLKPCQLSELT 120 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ L++V+D + DPHN+GAI+RSA+AF +ITT R+SP ES VLAK+ASGALE I YI Sbjct: 121 NTDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEIINYI 180 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + NL + LQ++H GF + GL S+ LE + KIAL+LGAEGKGLR KT+ET + Sbjct: 181 TVRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRETVCA 240 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 LTRLDMPGNIKSLNVSNAATIALYVAHKYL 270 >gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 246 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae R6] gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family [Streptococcus pneumoniae R6] gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] Length = 253 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] Length = 260 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y +N Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 Query: 280 FAK 282 K Sbjct: 242 LIK 244 >gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] Length = 253 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 15 NDIVYGVHAVTEALRANTGNKLYLQEDLRGKNLEKVKELATEKKVSISWTSKKSLSEIT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02] gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18] gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140] gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1] gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] Length = 250 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] Length = 245 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 N +YG+H V A L++ + ++ K L L ++ + + +D Sbjct: 3 NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLGVTLQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQGL P LDA+ + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-KGASHQGLIARVKPGRQYNENDLDAILDGKENPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VCAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DVYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT] gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT] Length = 265 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 10/248 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 R + + G + V AL + + ++A N ++ + +K V Sbjct: 16 REEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNVSGSINKVLGIAKDKGIIIKEVDR 75 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + +D + A HQG+ P ++ + ++VLD + DPHN+G+I+ Sbjct: 76 KKLDSMSITGA-HQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIM 134 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A GI+ KR + + + K+++GA E++ +++N+ A+ ++ G G Sbjct: 135 RTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYG 194 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D + Q +AL++G+EGKG+ T++ + + M G I +LN S AA + Sbjct: 195 ADMDGENYCFQTNFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGI 254 Query: 272 ALYITQNH 279 +Y Sbjct: 255 MMYEVLKQ 262 >gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395] gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae LMA3894-4] Length = 247 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] Length = 263 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 120/260 (46%), Gaps = 12/260 (4%) Query: 31 KKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++++ N+++ R + + G + V AL + + ++A N ++ + Sbjct: 2 KELKNRNKRNFNREEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNMTGSINKVLGIA 61 Query: 89 H--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139 +K V + +D + + HQG+ P ++ + +++LD Sbjct: 62 KDKGIIIKEVDRKKLDSMSITGS-HQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILD 120 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+G+I+R+A GI+ KR + + + K+++GA E++ +++N+ A+ Sbjct: 121 EIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAI 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ G G D + Q +AL++G+EG+G+ T++ + + M G Sbjct: 181 DEIKERGTWVYGADMDGENYCFQTNFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGK 240 Query: 260 IKALNVSNAAAVALYITQNH 279 I +LN S AA + +Y Sbjct: 241 ITSLNASVAAGIMMYEVLKQ 260 >gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans OS217] Length = 246 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 10/246 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV--KTVPPQTID 102 + F+YG+H + + L + +I +L + RL F + +T+D Sbjct: 2 KKQDFIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPLLKAAQDFGCTAQRATKKTLD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LDA+ +S L++LD V DPHN+GA LR+A A Sbjct: 62 EKADS-SQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E + + M G + +LNVS A V L+ Sbjct: 181 DGALYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHFAK 282 K Sbjct: 241 VRQRIK 246 >gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974M2] Length = 251 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y +N Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 Query: 280 FAK 282 K Sbjct: 242 LIK 244 >gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. SIP3-4] Length = 249 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVK--TVPPQTIDK 103 ++ L+G H V + L + + ++L K+ AR+ NL V+ V +D Sbjct: 3 DSRILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDG 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ P D + +VLD V DPHN+GA LR A A Sbjct: 63 MAGANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 123 MGVHAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY Sbjct: 183 PGNLFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEA 242 Query: 277 QNHFA 281 + Sbjct: 243 RRQRN 247 >gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 245 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + ++ ++ K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E++P IR++NL L+++ +G + ++ + L Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++G+EG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1] Length = 255 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIV 105 ++YG+H V ALN +I ++ + + + V + +D++ Sbjct: 5 EWIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRLMQLCKANKVRHSVVARRDLDQLF 64 Query: 106 G---KEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VHQG+ TA L + + + L+++LD V DPHN+GA LRSA Sbjct: 65 TANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLRSAD 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S +A ++K A GA E IP ++NL ++K+ G G + + Sbjct: 125 AAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGTAGE 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + ++ A+++GAEG G+R T+E + L M G++ +LNVS A V LY Sbjct: 185 ATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYE 244 Query: 276 TQNHFA 281 A Sbjct: 245 VVRQRA 250 >gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 249 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 4 EDSVIVGRHAVKEAITTGHPINKILIQDGVKKQQLEEILKHAKNQKIVVQTVPKSKLDHL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 EA HQG+A AP LD + L++LD + DPHN+G+ILR+A A Sbjct: 64 A--EAPHQGVAALVAPYEYADLDKLLAQLKDKDGLPTLVILDGLEDPHNLGSILRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G ++D+ Sbjct: 122 GVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGTAADNA 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q + +A+++G EG G+ +E + M G I +LN S AA++ +Y Sbjct: 182 TDYRQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIY 241 Query: 278 N 278 Sbjct: 242 R 242 >gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 249 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+ L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNTRLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 246 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 249 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + +A +AK+++GA+EHIP ++++NL L +M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] Length = 252 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVG 106 ++G H V+A L + + ++ T+ R +A V + + +D + G Sbjct: 6 LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A + LD + L++LD + DPHN+GA LR A A Sbjct: 66 -HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +A ++K A GA E +PYI+++NL L+ + G G D + L Sbjct: 125 VLAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A ++G+EG+G+R T+E + + M G +++LNVS A + L T+ Sbjct: 185 HFEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQ 242 >gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens DSM 3043] gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 14/260 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPF 91 M+ + ++R + +YGVH V A + +L + A ARL+ L Sbjct: 1 MKGKSSRTRVATPEGLDAVYGVHAVRALFE-RGQPPRELWIQEGRAEARLEALVALARQA 59 Query: 92 PVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------RNSQLLMVLDH 140 VK V +T+D + + AVHQG+ PL + + +A+ + LL++LD Sbjct: 60 GVKCAGVARETLDGVA-RGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLILDG 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN GA LRSA A G+I K + +A + K A GA + P +++NL A+ Sbjct: 119 VTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARAMG 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ + G +G + +S + L +A+++GAEGKG+R T++ +A L M G + Sbjct: 179 RLKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAGSV 238 Query: 261 KALNVSNAAAVALYITQNHF 280 +LNVS A V L+ Sbjct: 239 SSLNVSVATGVCLFEAVRQR 258 >gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B] gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] Length = 309 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 14/285 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + E I D R R K ++ +S+ + + G + V AL + S Sbjct: 29 QKENIKGKVDRKLEVRRNEERKPKDFETVKFESQVVRE---DIIEGRNAVIEALKSSSTT 85 Query: 68 IFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 I Q+L K + VK V + +D++ + VHQG+ P Sbjct: 86 IEQILVAKGDTTGSINVVLAEAREKRLVVKEVDRKKLDEM-SQTGVHQGVIAIVTPYKYC 144 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 ++ + +++LD + DPHN+GAILR+A G++ KR + + + Sbjct: 145 EVEDILEYAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVY 204 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA++++ ++ N+ + + G G D K + ALI+G+EG Sbjct: 205 KTSAGAVQYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANFRGAAALIIGSEG 264 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +G+ T+E + + M G I +LN S A + +Y K Sbjct: 265 RGISKLTKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRMK 309 >gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] Length = 253 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus LGP32] gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio splendidus LGP32] Length = 246 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] Length = 242 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L A+ + LL++LD + DPHN+G+I+R+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 257 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF G + P Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG-TPS 196 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 245 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + ++ ++ A K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + +N+ LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E++P IR++NL L+++ +G + ++ + L Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301] Length = 251 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + ++L ++ AR+ + V+T V +D + G Sbjct: 6 ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D + ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G IG + D+ Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IA++LGAEG G+R T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQ 245 Query: 280 FA 281 + Sbjct: 246 RS 247 >gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 275 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 11/267 (4%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL----FLYGVHTVSAALNNPS-RKIFQLLA 73 K R+ R + + + L F++G H V AL K+F Sbjct: 2 REKKQRKPSRQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRGNKLFMAED 61 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 + +A PVK VP Q +D++ + VHQ + L P +LD + Sbjct: 62 ARGEKIDGLKEAARAQSVPVKWVPKQKLDQM-SNQGVHQSVILAITPYEYLSLDELLAQT 120 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EHIP Sbjct: 121 KEQSFYLILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPI 180 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL+ A+Q++ GF G LI+G EG+G+ ++ Sbjct: 181 ARVTNLSQAIQQLKQAGFWIFGTDMKG-TDYRLWNAQGAAGLIIGNEGRGMSEGLKKDVD 239 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 M + M G +++LN S AA + +Y Sbjct: 240 EMLTIPMTGHVQSLNASVAAGLLMYQA 266 >gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 257 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + P Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 196 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxidans DMS010] gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxydans DMS010] Length = 246 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 13/244 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105 ++G+H V AAL+ P +I ++ A R+D V T+DKI Sbjct: 4 DVIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKIA 63 Query: 106 GKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG A PL S ++++ LL++LD V DPHN+GA LR+A A Sbjct: 64 -PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A K +SGA E +P+ +++NL+ ++++ G +G S DS+ Sbjct: 123 AHAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSEL 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--T 276 L Q +A++LGAEGKG+R T++ + ++ M G ++LNVS AA V LY Sbjct: 183 SLFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYR 242 Query: 277 QNHF 280 Q H Sbjct: 243 QRHL 246 >gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 244 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ Q+ K + L L ++ Q +D+ Sbjct: 2 SEIIYGIHAVRALLERDPLRLKQVYILKGREDKRLLPIIHQLEKLGIIIQLANRQWMDRQ 61 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ E P LD + + S L++LD + DPHN+GA LRSA A Sbjct: 62 T-ENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I K S +A K A GA E +P IR++NL L+++ +G + ++ Sbjct: 121 IDAVIVPKDKSAQLNATAKKVACGAAESVPLIRVTNLARTLRQLQQH-IWIVGTAGEANH 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + IAL++GAEG+G+R T+E + + M G++ +LNVS A V L+ Sbjct: 180 TLYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVR 239 Query: 279 HF 280 Sbjct: 240 QR 241 >gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK115] Length = 242 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 +YG+H VSA L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLHPLLAEMESLGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ + L + L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + ++V+ K A GA E +P I+++NL +L+++ G +G + Sbjct: 122 DAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 242 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EHIP R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 249 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 11/243 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + E ++ G + V AL + +KI+ A++ + + ++ VP Q ID Sbjct: 2 ENEQEWIGGRNPVLEALRSERDIQKIYIAEASQKGVMKQVIALAKERKLQIQFVPKQKID 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+V E HQG+A + + LD + ++LD + DPHN+G+I+R+A Sbjct: 62 KVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII R S + +AK+++GA+EHIP +R++NL + + G G + Sbjct: 120 AVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDRGLWIFGTDAK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +++G+EG G+ +E + HL M G + +LN S AA++ LY Sbjct: 180 GSSDYRTMDVDMPLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTSLNASVAASILLYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L A+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii str. Challis substr. CH1] Length = 243 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ LI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTGGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330] Length = 242 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + +++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS185] gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS195] gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS185] gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS195] gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS678] Length = 246 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L + +I +L + RL AN F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] Length = 254 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPP 98 ++ +YG H VSA L + + ++ + + AR+ + VP Sbjct: 2 AKPAESSATRLIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPS 61 Query: 99 Q--TIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + +D +VG HQG+ L+ LD + + L++VLD V DPHN+GA L Sbjct: 62 EHERLDALVGTRR-HQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A A ++ K + +A AK ASGA + +PYI ++NL AL++M G +G Sbjct: 121 RVADAAGAHAVVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++K + Q + +A +LGAEG GLR T++T +A + M G +++LNVS A+ + Sbjct: 181 AAGEAEKSVYQVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGI 240 Query: 272 ALYITQNHFA 281 L+ + A Sbjct: 241 CLFEARRQRA 250 >gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N +YG+H+V+A + +I ++ K RL N ++ + + +D Sbjct: 3 NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLGLSIQEMGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P L LDA+ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L +A+++GAEG G+R T++T + + M G + +LNVS A + L+ Sbjct: 182 DLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus KT] gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus flagellatus KT] Length = 251 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + + ++L ++ AR+ + V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ P D ++ +VLD V DPHN+GA LR A A Sbjct: 66 GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL L+++ G +G ++++ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL+LGAEG GLR TQET S+ + M G +++LNVS A+ + LY + Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 244 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L + + ++ A K RL N ++ + +D Sbjct: 3 NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLGITIQEAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V K A HQG+ P LD + + + LL++LD V DPHN+GA LR+A A Sbjct: 63 V-KGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ K S +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 AIAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] Length = 250 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 3 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP +D + L++LD + DPHN+G+ILR+A Sbjct: 62 QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 121 CTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 181 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240 Query: 275 ITQNHF 280 Sbjct: 241 EVLRRR 246 >gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] Length = 250 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Hungary19A-6] gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] Length = 246 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 Q + +YG+H AL N K++ K + +P ++ Sbjct: 2 KRRQEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAAQKKVAISWIPKKS 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154 + ++ + AVHQG L + L A+ ++ L+++LD + DPHN+G+ILR+A Sbjct: 62 LSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSILRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII K + + V+AK+++GA+EH+P R++NL+ L K+ G+ G Sbjct: 121 DATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D P + K+ALI+G EG+G+ ++ M + M G +++LN S AAAV +Y Sbjct: 181 DG-TPSHKWNTAGKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMY 239 Query: 275 ITQNH 279 H Sbjct: 240 EVFRH 244 >gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] Length = 249 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + NL V T +T+ K Sbjct: 4 KEQDAIFGRNPVMEAIKSGKE-IEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ +A ++ + + L++LD + DPHN+GAI+RSA A Sbjct: 63 LAGSQ-NHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+E++ ++SN+ + ++ + G IG + Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 241 >gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis DSM 16069] Length = 246 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 14/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKI 104 + +YG+H V L S ++ +L N R L ++ + Q +D++ Sbjct: 2 SELVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIEIIQKERQELDEM 61 Query: 105 VGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ P + L + + +++LD V DPHN+GA LRSA Sbjct: 62 TDQR--HQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRSAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K + S + V+ K A GA E +P+I ++NL A++++ G G + + Sbjct: 120 AAGVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTAGE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ + Q +A+++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 180 AEQDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFE 239 Query: 276 TQNHFAK 282 K Sbjct: 240 AVRQRIK 246 >gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42] gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 123/243 (50%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N A+ + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ + A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + ++ +AK+++GA+EHIP ++++NL L +M G +G + Sbjct: 120 AVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VYR 242 >gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] Length = 246 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + + + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEVAETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter uraniireducens Rf4] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 6/241 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104 ++ +YG+++V AL R +A + RL+ L PV+ + I ++ Sbjct: 2 KDEIIYGLNSVMEALRGKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIARL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G E HQG+AL P L + LL+VLD V DPHN+GA++RSA G Sbjct: 62 CGTE-HHQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A + K+++GA+E IP ++N+ L+++ + GF G +S + Sbjct: 121 VIIPRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSIF 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + L++G+EG+G+RP ++ + + + G + +LN S A + L+ + Sbjct: 181 DQKLTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQRS 240 Query: 282 K 282 K Sbjct: 241 K 241 >gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251 2'-o-methyltransferase) [Cupriavidus taiwanensis LMG 19424] gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTID 102 + L G H V+A L + + + R D L V+ V + + Sbjct: 2 AKQKLLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVRLHPVDAERLR 61 Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + HQG+ + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 62 GMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++ Sbjct: 121 GAHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 181 KSLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas ingrahamii 37] gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas ingrahamii 37] Length = 246 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDK 103 ++ LYG+H+V A L + ++ A K RL+ + V+ + + +D Sbjct: 3 KSELLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWGISVQLMNRKAMDD 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+ L L+++ L++LD V DPHN+GA LRSA A Sbjct: 63 KSEGEQ-HQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S S + V+ K A GA E +P I ++NL A++ + G G + ++ Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L +AL +GAEGKGLR T+E + L M G + +LNVS A V L+ Sbjct: 182 TQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEV 241 Query: 277 QNHFA 281 Sbjct: 242 VRQRG 246 >gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 252 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 12/247 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQT 100 ++ + G + V AL + S I Q+L + + PVK V + Sbjct: 3 NKEREDLIEGRNAVIEALKSDS-TIEQVLVSSGKSEGSINVILAKAKEKGIPVKYVDRKK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +DKI VHQG+ + P +D + ++VLD + DPHN+G+I+R+ Sbjct: 62 LDKI-SNGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIEDPHNLGSIIRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A GII KR + + + K+++GA++++ ++SN+ A+ K+ G G Sbjct: 121 AELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLKKEGIWVYGAE 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + + +AL++G+EG+G+ T++ + + M G + +LN S AA + + Sbjct: 181 IDGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSLNASVAAGIVM 240 Query: 274 YITQNHF 280 Y Sbjct: 241 YEILKQR 247 >gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTSGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PTHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK678] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TA-GAVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E VHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TDGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 249 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + NL V T +T+ K Sbjct: 4 KEQDVIFGRNPVMEAIKSGKE-IEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ +A ++ + + L++LD + DPHN+GAI+RSA A Sbjct: 63 LAGSQ-NHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G + Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQV 241 >gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 248 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF G + P Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1] gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 247 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + N V T T+ K Sbjct: 2 EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ +A +D + + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSQ-NHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K E+ + +A ++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974] gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] Length = 250 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 3 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP ++ + L++LD + DPHN+G+ILR+A Sbjct: 62 QMV-PGVQHQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G++ KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 121 CTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180 Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 181 AVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240 Query: 275 ITQNHF 280 Sbjct: 241 EVLRRR 246 >gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] Length = 279 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 13/269 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + K K+ + +K E+ F++G H V+ AL +L ++ Sbjct: 7 RKRPNKKTAGQSEARKENRPDRRKEAEGEAIEDNFVFGYHAVAEALKEGRG--NKLFLSE 64 Query: 76 NA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 A + RL A PVK VP Q +D + + VHQG+ L P TLD + Sbjct: 65 EARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SDQGVHQGMILAITPYQYLTLDELLA 122 Query: 130 --RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L ++LD++ DPHN G+I+R+A A DGII K + + ++ K+++GA+EHI Sbjct: 123 QTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHI 182 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R++NLT A+Q++ GF G + LI+G EG+G+ ++ Sbjct: 183 PVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNEGRGMGEGLKKE 241 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 M + M G +++LN S AA + +Y Sbjct: 242 VDQMLTIPMTGHVQSLNASVAAGLLMYQA 270 >gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK150] Length = 242 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] Length = 285 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 103/271 (38%), Positives = 158/271 (58%), Gaps = 8/271 (2%) Query: 4 ISKKKSEKIFSLKD----SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 +SK +K + K+ S + R R + S + L L+G+H V A Sbjct: 1 MSKDHFKKPWRDKNRFSASGGQRYGRPLRAKTPHRGGPASSSGENAEGPLVLFGLHAVEA 60 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL NP R++ +L+ T+NA RL +A P + V P+ +D+++G + VHQG+ALET Sbjct: 61 ALKNPKRRVHRLMLTENAERRL-IEAVGPITAKIDRVTPRDLDRLLGPDTVHQGVALETE 119 Query: 120 PLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 PL P D + + + L+VLD V DPHN+GAILRS+ F G++ T R+SP + VL Sbjct: 120 PLPEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVL 179 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AKSASGALE IP ++NL A++++ GF +GL +++ +E + AL++G+E Sbjct: 180 AKSASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDWSRPTALVMGSE 239 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GKGLR T++T ++A + G + +LNVSN Sbjct: 240 GKGLRELTRKTCDTLARISTDGPVASLNVSN 270 >gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 251 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L N K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 +T+ + VHQG L+ + L + + L+++LD + DPHN+G+IL Sbjct: 64 KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-3-3Ab] Length = 354 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 21/254 (8%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVK 94 ++PE +YG TV AAL + + + ++ L RL + + + Sbjct: 89 EAEPEQEIIYGRQTVLAALRSQA-TLNRVWV----LPRLRYSPQFWSLLEEAKARGTVID 143 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147 V Q ++ + A HQG+A + P L+ + +L+VLD + DPHN+ Sbjct: 144 EVSLQRLNLLTA-GANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNL 202 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS AF G++ +R + +A + K A+GAL +P R+ NL AL+ + GF Sbjct: 203 GAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQGF 262 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G +S P+ IAL++G+EG+G+ TQ + + + G ++LN S Sbjct: 263 WVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASV 322 Query: 268 AAAVALYITQNHFA 281 AA +ALY + Sbjct: 323 AAGIALYEIHRQRS 336 >gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] Length = 251 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 9/250 (3%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTV 96 ++ +YG H VSA L + + ++ T K+A R + Sbjct: 2 AKAPENTPTRLIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQS 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +D +VG HQG+ + L+ LD++ + L++VLD V DPHN+GA L Sbjct: 62 EGDKLDALVGTRR-HQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A A ++ K + +A K ASGA + +PYI ++NL AL++M G +G Sbjct: 121 RVADAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++K L + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + Sbjct: 181 AAGEAEKTLYGVDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGI 240 Query: 272 ALYITQNHFA 281 L+ + Sbjct: 241 CLFEARRQRG 250 >gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] Length = 248 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + P Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] Length = 245 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A ++N ++ ++LA K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L L RN LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACLRTADAAGVSA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S ++ K A GA E++P IR++NL L+ + +G + ++ + L Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] Length = 248 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103 + +YG++ V AL SR+I +L +A RL+ L PV+ +++ Sbjct: 3 KEEIIYGLNPVMEALR-GSREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAF 157 + G E HQG+AL+ P LD V L++VLD V DPHN+GA++RSA Sbjct: 62 LCGTE-HHQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAACA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + ++ K + +AV KS++GA E I +++N++ AL+ + GF G ++ Sbjct: 121 GANAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSAR 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q+ +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 181 HTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEVV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 248 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + P Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] Length = 249 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103 + +YG++ V AL SR+I +L ++ RL+ L PV+ +++ Sbjct: 3 KEEIIYGLNPVMEALR-GSREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G E HQG+AL+ P LD V L++VLD V DPHN+GA++RSA Sbjct: 62 LCGTE-HHQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAACA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K + +AV KS++GA E I +++N++ AL+ + GF G ++ Sbjct: 121 GAHAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSAR 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q+ + +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 181 STLYQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEVV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 242 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 242 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L + + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P Q K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS155] gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS155] Length = 246 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L + +I +L + RL AN F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102 + +YG + V A+N+ R+I ++ +KNA + V T T+D Sbjct: 2 KENENIIYGRNPVLEAINSG-REIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ HQG+A + ++ + +++LD + D HN+GAI+R+A Sbjct: 61 KLSNY-GNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS GII KR S ++ + K+++GA E+I +++SN+ +A+ + G +G S D Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++G+EGKG+ TQ+ +A + M G I +LN S AA++ +Y Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VIRQR 244 >gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437] Length = 247 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 14/248 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WDANLPHPFPVKTVPPQTI 101 EN ++ G V AL R + +LL + A + V+ VP QT+ Sbjct: 2 ENEWVIGRRAVMEALK-AGRSMGKLLVAEGAGRGKGGLGPLLEEARRQGVDVQQVPRQTL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ HQG+A + P L+ + +++LD + DPHN+G+ILR+A Sbjct: 61 DRVAA-GLNHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPHNLGSILRTA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ KR + + +AK+++GA+EH+P +R++NL ++ G + + Sbjct: 120 DASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKERGVWLVAGDA 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D+ ++ + +AL++G EGKG+ + +E L M G + +LN S AAA+ +Y Sbjct: 180 DASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNASVAAALLMY 239 Query: 275 ITQNHFAK 282 K Sbjct: 240 EVLRGREK 247 >gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 247 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A +N ++ ++L K RL N ++ V QT+D + Sbjct: 5 IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNK-SQ 63 Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ P L L+A+ + + LL++LD V DPHN+GA LR+A A D Sbjct: 64 GEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S + K A GA E +P IR++NL ++ + +G + +++ + Sbjct: 124 VIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis JLW8] Length = 250 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L S + ++L ++ AR+ N+ V+T V +D + G Sbjct: 6 ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D + ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G +G + DS Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L N IAL+LGAEG G+R T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQ 245 Query: 280 FA 281 + Sbjct: 246 RS 247 >gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] Length = 250 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTI 101 + FLYG + V AL + R + ++ + L + + V+ VP + Sbjct: 3 EEGIDFLYGRNPVLEALRSG-RDMNKVFIMEGQQKGPLAQIIAMANEASVQVSFVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 +K+ G E HQG+ A T++ + + L ++LD + DPHN+G+ILR+A Sbjct: 62 EKMAGSE-HHQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII KR S + +AK+++GA+EHIP R++NLT L+++ G +G + Sbjct: 121 DAVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDA 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N + +++G+EGKG+ +E+ + HL M G + +LN S AAA+ LY Sbjct: 181 KESQDYRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLY 240 Query: 275 ITQN 278 Sbjct: 241 EVHR 244 >gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 251 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL + R I ++ + L + V T + +D++ Sbjct: 3 EEWILGKNPVIEALRSG-RTINKIWVAEGTNKNLMGPVFALAKEQGVIVTTANRKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQG+ A +D + + +++LD + DPHN+G+I+R+A A Sbjct: 62 VSTD-NHQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPHNLGSIMRTADAV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S S +A +AK+++GA+ ++P R++NL ++++ G G + +K Sbjct: 121 GAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKERGVWIAGTDASAK 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++G+EGKG+ +E + L M G + +LN S AAA+ +Y Sbjct: 181 QDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNASVAAALLMYEVY 240 Query: 278 N 278 Sbjct: 241 R 241 >gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16] gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16] Length = 247 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTID 102 +N L G H V+A L ++ + + R D L V+ V + + Sbjct: 2 AKNKLLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLR 61 Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + HQG+ + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 62 GMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++ Sbjct: 121 GAHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 181 KSLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 249 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L N S KI ++ + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 YITQN 278 Y N Sbjct: 240 YQAFN 244 >gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V A L N ++ ++ + ARL + V+ + +D+ Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDEK-SDG 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P L L A+ L++LD V DPHN+GA LR+A A G+ Sbjct: 67 GQHQGVVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + V++K A GA E +P +++NL ++ + G IG + ++ L Q Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 242 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEV 237 >gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 245 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L ++ ++ K RL H V+ + QT+D Sbjct: 5 IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64 Query: 108 EAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL L+ + +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L+N ++ +L + RL NL F ++ + +D Sbjct: 2 KKQDTIFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLD 61 Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 G + HQG+ PL LD + + L++LD V DPHN+GA LR+A A Sbjct: 62 DKAGS-SQHQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S ++ ++K A GA E IP +++NL ++ + G +G + ++ Sbjct: 121 AGVHAVIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + Q +A+ +GAE KGLR ++E S+ + M G + +LNVS A V L+ Sbjct: 181 EGNVYQADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108 +YG V +L+ KI++ K +D + V + DKI + Sbjct: 4 IYGRKPVLDSLDTDI-KIYKAYIQKQNSKLVDTIIKKLEEKNIEISFVDKRFFDKI---D 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ LE T+D V+++ L++LD + DPHN+GAI+RSA +F DG+I +R Sbjct: 60 MNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAIIRSAESFGFDGVIIPERR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S ++ + K+++GA+ +I IR++NLT ++ + GF GL+ ++ + + K Sbjct: 120 SASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIYGLAGEADSDISKADLKGK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G EG+G+ +E + ++ M G + +LN S AA +++Y Sbjct: 180 VTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230 >gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae TIGR4] gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae TIGR4] gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] Length = 242 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 378 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 13/250 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPP 98 ++ E +YG TV AAL + + + ++ + + + V P Sbjct: 100 ETELEQEIIYGRQTVLAALKSQA-TLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSP 158 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAIL 151 + ++ + A HQG+A + P L+ + + +L+VLD + DPHN+GAI Sbjct: 159 KRLNALTA-GANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIA 217 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RS AF G++ +R + ++ + K A+GAL +P R+ NL AL+ + GF G Sbjct: 218 RSVEAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYG 277 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +S P+ IAL++G+EG+G+ TQ + + + G ++LN S AA + Sbjct: 278 TTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGI 337 Query: 272 ALYITQNHFA 281 ALY + Sbjct: 338 ALYEIHRQRS 347 >gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 248 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + P Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72] Length = 242 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++N++ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 261 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 12/257 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91 + N K + ++ E+ + G + V AL R I +LL + AL R +D Sbjct: 5 NLNLKKKGRNRLED-IIAGRNPVREALRAN-RPINKLLIAEGALTGSLREIYDLARERKI 62 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145 PV+ V Q + K+V EA HQG+ A +D + L++LD V+DPH Sbjct: 63 PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+A A GII +R S S +A+S++GA+E++P R++N+ ++ + Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G D ++ + +AL++G EGKGL +E + L M G + +LN Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 S AAA+ Y K Sbjct: 242 SVAAALLSYEVVRQRRK 258 >gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 242 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241 >gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 257 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + P Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGFWIFGTDMNG-TPS 196 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 242 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] Length = 242 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] Length = 324 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 33/301 (10%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-------------HTSQPENLFLYG 53 ++SE+ +K L R +KK + K R ++ + +N +YG Sbjct: 12 RESERPQPIKIKGKRVLSHPIRTHKKAEVILPKPRLLDQAYQPPVQIKNSEEQDNDLIYG 71 Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTIDKIV 105 + V +AL + R + +L T +RL +D H + V P+ +D+I Sbjct: 72 RYPVLSALESH-RNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT 126 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+A + AP L+ + + +++V D + DPHN+GAI+R+A A Sbjct: 127 -NGANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGA 185 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R + ++ + K A+GALE+ R+ NL+ AL+++ GF G ++ +P Sbjct: 186 QGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEP 245 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L L++G+EG+GL TQ++ + + + G +LN S A +ALY Sbjct: 246 LHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQ 305 Query: 280 F 280 Sbjct: 306 R 306 >gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 246 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105 +YG+H V+A L N ++ ++ K + LD L V+ V QT+D Sbjct: 5 IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRL--SISVQQVNRQTLDNKA 62 Query: 106 GKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E VHQG+ P L L+ + +++ LL++LD V DPHN+GA LR+A A Sbjct: 63 QGE-VHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKK 218 D +I K S + +A+ K A GA E +P IR++NL ++++ +G + ++ Sbjct: 122 DAVIVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIWIVGTAGEATT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 DIYTSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVR 241 Query: 279 H 279 Sbjct: 242 Q 242 >gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] Length = 242 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 64 -GAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V+AK+A+GA+EH+P R++NL+ L K+ GF G + P Sbjct: 123 GVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + KIALI+G EG+G+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTSGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241 >gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 333 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 19/294 (6%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVS 58 ++ +E+ R R + + FN++ E L G ++V Sbjct: 42 ERSNERPERSGGRPERSNERPERSSGRPERFNERPPRIENKEMEDLNEGLDKLEGRNSVL 101 Query: 59 AALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 A+ + R I ++L +K + V+ ++DKI + HQG+ Sbjct: 102 EAIKSD-RTINKILVSKGDKEGSIKQIIALAREKGIIVQETDRVSLDKISTTHS-HQGVI 159 Query: 116 LETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A +D + + +++LD + DPHN+G+ILR+A A G++ KR Sbjct: 160 AFVAVKDYVEVDDILEIAQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRR 219 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + +A ++K+++GA+E++P R++N+ + + +G +K + Sbjct: 220 AIGLTAAVSKASAGAIEYVPVARVTNIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGP 279 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 IAL++G+EG+G+ E + +L M G I +LN + A A+ +Y K Sbjct: 280 IALVIGSEGEGMGKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQRGK 333 >gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae ATCC 23330] Length = 248 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L + I +L +N A R + + ++ + Sbjct: 6 LIYGFHAINARLWQNPKSITELYVLENKADARTREVLEKAAAENVKLHFADQDRLNTMA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGDADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQR 243 >gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 242 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ + GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus pyogenes MGAS315] gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 248 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + P Sbjct: 129 GVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana ATCC 700345] Length = 246 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V A L N ++ ++ + ARL + V+ + +D Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDDK-SDG 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P L L A+ L++LD V DPHN+GA LR+A A G+ Sbjct: 67 GQHQGIVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + V++K A GA E +P +++NL ++ + G IG + ++ L Q Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] Length = 248 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + D + P +T+ + Sbjct: 10 NDMVYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARNKKVSISWAPKKTLSDMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + + L+++LD + DPHN G+ILR+A A Sbjct: 69 EGAVHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATKVS 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EH+P R++NL+ AL K+ GF G D P+ Sbjct: 129 GVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDG-TPV 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + K+ALI+G+EGKG+ ++ M + M G +++LN AAAV +Y H Sbjct: 188 QKWNTSGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRH 246 >gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 279 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 20/280 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K + ++ K + ++ R+ +R ++ ++ + E+ F++G H V+ AL Sbjct: 3 EKPQRKRPNK-KTAGRSEARQENRPDRRKEAAGE------AIEDNFVFGYHAVAEALKEG 55 Query: 65 SRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +L ++ A + RL A PVK VP Q +D + + VHQG+ L P Sbjct: 56 RG--NKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SNQGVHQGMILAITP 111 Query: 121 LLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 TLD + + L ++LD++ DPHN G+I+R+A A DGII K + + ++ Sbjct: 112 YQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIV 171 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 K+++GA+EHIP R++NLT A+Q++ GF G + LI+G E Sbjct: 172 VKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNE 230 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+G+ ++ M + M G +++LN S AA + +Y Sbjct: 231 GRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQA 270 >gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] Length = 247 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L N K++ + + P + Sbjct: 2 KTTKETSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDG-TPSHKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 242 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] Length = 251 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L N K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 + + + VHQG L+ + L + + L+++LD + DPHN+G+IL Sbjct: 64 KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. W3-18-1] gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella putrefaciens CN-32] gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. W3-18-1] gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens CN-32] Length = 246 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L + +I +L + RL A+ F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 242 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEV 237 >gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 255 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L S KI ++ + AR + ++ VP Sbjct: 8 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + LL++LD++ DPHN+G+ILRS Sbjct: 68 KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 187 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245 Query: 274 YITQN 278 Y N Sbjct: 246 YQAFN 250 >gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 242 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] Length = 253 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] Length = 318 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 103/274 (37%), Positives = 150/274 (54%), Gaps = 7/274 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 +F + H RR + + ++ ++ +L+G H V+AALNNP R Sbjct: 34 RNCVFMRQPRHGRSARRP----RVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVY 89 Query: 69 FQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 +LL T+ L+ V + V Q +D ++G +AVHQG+AL L L Sbjct: 90 ERLLVTEENHPALEEATRSGRNVRVTPELVQRQRLDDLLGPDAVHQGVALLARILPPMPL 149 Query: 127 D-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D A+ ++VLD V DP NIGAILRSA AF ++ R +P E+AVLAK+ASGALE Sbjct: 150 DEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALE 209 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P +R NL+ A++++ G T+GL + ++AL+LGAEGKGLR T+ Sbjct: 210 TVPMVREVNLSRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTR 269 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E+ +A L+MPG +++LNVS AAAV LY Sbjct: 270 ESCDEIAGLYMPGEMESLNVSVAAAVGLYELMRR 303 >gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] Length = 250 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E ++ G H++ AL + R I ++ + A L H V+ V + +D Sbjct: 2 EEQEWIGGKHSLLEAL-HAGRTINKIWVAEGAQKHLTQPIVAEAKKHGIVVQFVDKRKLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ HQG+ + AP +D + L++LD + DPHN+G+ILR+A Sbjct: 61 QMA-PGLQHQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR S + +A ++K+++GA+E++P R++NL ++++ G +G Sbjct: 120 CTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVG 179 Query: 216 SKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K+ + + + +A+++G E KG+ +ET + L M G + +LN S AA V + Sbjct: 180 AKEEMYRSGNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIM 239 Query: 274 YITQNHF 280 Y Sbjct: 240 YEVLRRR 246 >gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] Length = 247 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 12/243 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG H V A L L ++ R V V +D++ Sbjct: 1 MLLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMA 60 Query: 106 GKEAVHQGLALETA--------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G HQG+ + P L L+ L++LD V DP N+GA LRSA Sbjct: 61 G-GKRHQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I K ++ + V +ASGA E +PYI ++NL ++++ GF+ GL+ ++ Sbjct: 120 GVDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + +A+++GAE KGLR +E ++ + M G + +LNVS A V LY Sbjct: 180 ADLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLYEVL 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio salmonicida LFI1238] Length = 247 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104 N FL+G+H A L + ++ K RL F ++ +P +T+D Sbjct: 3 NEFLFGIHATKAVLERDPARFIEIFVLKGREDDRLLPIITELGELGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P L LD + + L +VLD V DPHN+GA LR+A Sbjct: 63 A-KGANHQGIIARVTPAKQLNERDLDDIMDKTENPLFLVLDGVTDPHNLGACLRNADGAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ K Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTAGEATK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica PV-4] gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica PV-4] Length = 246 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102 + F +G+H V A L N ++ ++ + RL + + V+ + +D Sbjct: 2 KKQDFTFGIHAVEALLKNSPERVIEMWVLQGRDDQRLMPLIAMAAEYGVSVQQASRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVA 156 G + HQG+ + P + + + L++LD V DPHN+GA LR+A A Sbjct: 62 DKAGS-SQHQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L + IA+ +GAE KGLR T+E+ S+A + M G + +LNVS A + L+ Sbjct: 181 EHDLYKADLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] Length = 242 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] Length = 247 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L N K++ + + P + Sbjct: 2 KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D P + ++ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDG-TPSHKWNTAGRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 242 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] Length = 249 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L+ + L+++LD + DPHN+GA LRSA A Sbjct: 65 -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ Sbjct: 124 DFVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243 Query: 280 FAK 282 + Sbjct: 244 RGQ 246 >gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771] Length = 254 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 129/225 (57%), Positives = 164/225 (72%), Gaps = 1/225 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 P+ YG+HTV AAL+NP RK +L T+NALARL+ D + V P ID Sbjct: 16 ARAPDQGLSYGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEID 74 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K++G EA+HQG+ LET PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ + Sbjct: 75 KVLGPEAIHQGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAV 134 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 ITT+R+SP+ES VLAKSASGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE Sbjct: 135 ITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEG 194 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 DK+AL+LG+EGKGLR KT+ET T++A L MPG IK+LNVSN Sbjct: 195 TFSGDKVALVLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239 >gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 328 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 24/289 (8%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----------LFLYGVHTVSAALN 62 + S K R+ R K + S PE LYG H V AAL Sbjct: 23 QRRPSSKGKFSRDQRSPDKPVLKRRYDPQPSPPEPTESESTLSEDVDLLYGRHPVLAALE 82 Query: 63 NPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 N R++ ++ + + + V + + ++ + A HQG+A + Sbjct: 83 N-QRQLNRVWILPQLRYDHRFHSLLLQAKANGTVIDEVDSRRLSQVT-QGANHQGVAAQV 140 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 AP L + +++V D + DPHN+GAI+R+A A G++ +R + Sbjct: 141 APYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAVG 200 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K A+GALE +P R+ NL+ AL+++ + GF G +D+ K L N I L Sbjct: 201 VTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCADAGKLLHTVDLNGSIVL 260 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G+EG GL TQ + + + G +LN S AAA+ LY T Sbjct: 261 VIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQR 309 >gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens 200] Length = 246 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L + +I +L + RL A F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae MJ-1236] gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] Length = 247 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b] Length = 249 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L+ + L+++LD + DPHN+GA LRSA A Sbjct: 65 -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ Sbjct: 124 DFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243 Query: 280 FAK 282 + Sbjct: 244 RGQ 246 >gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] Length = 251 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V+A L + + ++ ++A A+ D + V +D + G Sbjct: 6 LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L L+ + LL++LD V DPHN+GA LR A A Sbjct: 66 -NARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++G+EG+G+R T+E + + M G +++LNVS ++ + L ++ Sbjct: 185 HFDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQR 243 >gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316] gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316] Length = 249 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L N K++ + + P Sbjct: 2 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 + + + VHQG L+ + L + + L+++LD + DPHN+G+IL Sbjct: 62 KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 121 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 181 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 239 Query: 272 ALYITQNHF 280 +Y + Sbjct: 240 LMYEVFRNR 248 >gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3] Length = 247 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 13/248 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102 + +G+H V A L N ++ ++ + RL + V+ + +D Sbjct: 2 KKQDITFGLHAVEAVLQNSPERVIEIWVLQGRDDKRLIPILEIASQWGVSVQYASRKALD 61 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+ + L LD + L++LD V DPHN+GA LR+A Sbjct: 62 DKSA-GGQHQGVVAKVKAAKILNDNDLHAMLDGT-ETPFLLILDGVTDPHNLGACLRNAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII K S + V++K A GA E +P +++NL ++ + G G + + Sbjct: 120 AAGVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGAAGE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + Q +A+ +GAEGKGLR T+E+ S+ + M G + +LNVS A + L+ Sbjct: 180 ADSDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGICLFE 239 Query: 276 T-QNHFAK 282 + AK Sbjct: 240 AVRQRLAK 247 >gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 2603V/R] gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] Length = 251 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L N K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 +T+ + VHQG L+ + L + + L+++LD + DPHN+G+IL Sbjct: 64 KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKEFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40] gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40] Length = 248 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT--IDK 103 + ++G+H V + L ++I ++ + AR+ + +K +P +D Sbjct: 3 KQEIIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS 62 Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L P ++A+ L++VLD V DPHN+GA LRSA A Sbjct: 63 VSA-DGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S + V K A GA +++P I ++NL L+KM G G + D+ Sbjct: 122 AGAHALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDT 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +++GAEG G+R T ET + + M G + +LNVS A V L+ Sbjct: 182 DKSIYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEV 241 Query: 277 QNHF 280 Sbjct: 242 VRQR 245 >gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 255 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L S KI ++ + AR + ++ VP Sbjct: 8 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 68 KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRS 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N KI L++G EGKG+ P + + M G +++LN S A V L Sbjct: 187 MEG-DDYRKWNANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245 Query: 274 YITQN 278 Y N Sbjct: 246 YQAFN 250 >gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 249 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L S KI ++ + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + L++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 YITQN 278 Y N Sbjct: 240 YQAFN 244 >gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] Length = 243 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAAAKKVSISWSPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + L V + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PVHKWNTAGKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter aphrophilus NJ8700] Length = 245 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + ++ ++LA K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I TK S ++ K A GA E++P IR++NL L+++ +G + ++ + L Sbjct: 124 VIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 249 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99 S N F++G H L S KI ++ + AR + ++ VP Sbjct: 2 SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ G E HQGL L A D + + LL++LD++ DPHN+G+ILRS Sbjct: 62 KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + N K L++G EGKG+ P + + M G +++LN S A V L Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239 Query: 274 YITQN 278 Y N Sbjct: 240 YQAFN 244 >gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13] Length = 249 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102 E F+ G + V AL + R+I +L + + V+ VP + ID Sbjct: 3 KEKEFIMGRNPVLEALKSN-REINKLWIAEGGQKGSIQQVIAMAKEANVLVQFVPRKKID 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR + +A +AKS++GA+EHIP +R++NL + ++ G G + Sbjct: 120 AVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKERGLWIFGTDAK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + LI+G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 180 GTVDYTKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTSLNASVAASLLMYE 239 Query: 276 TQN 278 Sbjct: 240 VFR 242 >gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 251 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K +H Q +YGVH V+ +LN N K++ + + P Sbjct: 5 KDKHL-QETTDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 +T+ ++ + AVHQG L + L + + L+M+LD + DPHN G+IL Sbjct: 64 KKTLSEMT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNFGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII K + + V++K+++GA+EH+P R++NL+ L K+ GF G Sbjct: 123 RTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D P+++ + K+ALI+G+EGKG+ ++ M + M G +++LN S AAAV Sbjct: 183 TDMDG-TPVQKWNTSGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAV 241 Query: 272 ALYITQNH 279 +Y + Sbjct: 242 LMYEVFRN 249 >gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] Length = 246 Score = 254 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLP--HPFPVKTVPPQTIDK 103 + LYG++ V AL +RK F+L T R+ A L V+ +++ Sbjct: 2 KEDILYGINPVREALR-GNRKAFELFVQTGGTDQRIAKLATLAEEKGIAVRRRERADLER 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ L+ AP + L+ L+VLD + DP N+GA++RSA Sbjct: 61 LAG-NPHHQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + + V+ K+++GA+E IP I+++NL L+++ G GL+ ++ Sbjct: 120 AGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + Q +AL++G+EG+G+RP ++ + + G I +LN S A + L+ Sbjct: 180 NKDIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLFEA 239 Query: 277 QNHF 280 Sbjct: 240 ARQR 243 >gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] Length = 249 Score = 254 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSSQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L+ + L+++LD + DPHN+GA LRSA A Sbjct: 65 -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S + + V++K A GA E IP +R++NL A+ + G G + +++ Sbjct: 124 DFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243 Query: 280 FAK 282 + Sbjct: 244 RGQ 246 >gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae] Length = 313 Score = 254 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 138/278 (49%), Gaps = 17/278 (6%) Query: 18 SHYAKLRRNHRDYKKM--QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 + A+ R H YKK + + RH + + + G + V L+ P+ ++ + Sbjct: 37 TPKAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEG 96 Query: 74 TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT------ 125 TKN RL + H P+ VP +D + G +HQG+ L+ P T Sbjct: 97 TKN-DNRLSEAVQIAHSRGIPMIEVPRHEMDLMTG-NGMHQGIGLQIPPYKYTTVFDLIG 154 Query: 126 -LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +++ +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 155 RINSTGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTA 214 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + +N+T A+Q+ G+Q +GL + L+ + + +++G+EGKG+ Sbjct: 215 ARLPVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLV 274 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 ++ S+ + M G +++LN S AA V L + Q Sbjct: 275 RDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRL 312 >gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus succinogenes 130Z] Length = 245 Score = 254 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L + ++ A K RL N H V+ + QT+D Sbjct: 5 IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKAHG 64 Query: 108 EAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P L LD + N + LL+VLD V DPHN+GA LR+A A D Sbjct: 65 E-VHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL L+ + +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 248 Score = 254 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + P Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510] Length = 311 Score = 254 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 15/289 (5%) Query: 5 SKKKSEKIFSL---KDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 S++++E+ + + H A R++ D + + K + LYG+H V+AA Sbjct: 20 SERQAERTGAKPQHQPQHGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAA 79 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-----VPPQTIDKIVGKEAVHQGLA 115 NP R+I +LL T + A L+ ++ +D+++ AVHQG+ Sbjct: 80 WTNPERRIHRLLVTDSGRAALEPVIAEARARGLQRPEASPADRVELDRMLPPGAVHQGIV 139 Query: 116 LETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 ++ +PL ++ + N S +++ LD V DPHN+GAILRSA AF ++ T+R++ Sbjct: 140 IDASPLPELGIEDLCNELASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTERHA 199 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASGALE +P +R++NL AL + GF ++GL+ L + K Sbjct: 200 PETTGVLAKSASGALEAVPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLTGKT 259 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++GAEG GLR T E ++A L G + +LNVSNAAAVALY Sbjct: 260 VLVMGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALYEVAR 308 >gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 129PT] gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 2336] gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT] gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus 2336] Length = 245 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L N ++ ++ K RL N + V+ + T+DK Sbjct: 5 IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P + + + + LL+VLD + DPHN+GA LRSA A Sbjct: 65 E-VHQGIIARVQPAKELNENDLVEILQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220 +I K S +A+ K A GA E +P +R++NL L+ + +G + ++ + L Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIWVVGTAGEAIETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 184 YEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQR 243 >gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B1 str. Okra] Length = 257 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ ++ + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 246 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + R I ++L K A R V+ V + +D + + Sbjct: 5 IEGRNPVLEALRSG-RTINRILVAKGAREGSIREVIALARSQGVIVQEVARERLDAMA-R 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A LD V LL+VLD + DP N+G++LR+A A Sbjct: 63 GRNHQGVIALAAAHRYYDLDEVLERAAASGEDGLLLVLDGIEDPQNLGSLLRTADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R + + +AK ++GA+E++P R++N+ L+ + G+ +G ++ + Sbjct: 123 GVIIPERRAVGLTETVAKVSAGAVEYVPVARVTNIARTLEMLKERGYWVVGTHQEADELY 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++G+EG+G+ ET L M G + +LN + A A+ LY + Sbjct: 183 YEARLTGPLAVVIGSEGRGMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQR 242 Query: 281 A 281 + Sbjct: 243 S 243 >gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 279 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 132/280 (47%), Gaps = 20/280 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K + ++ + N D +K + E+ F++G H V+ AL Sbjct: 3 EKPQRKRPNKKTAGRSEARQENKPDRRKEAA-------GEAIEDNFVFGYHAVAEALKEG 55 Query: 65 SRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +L ++ A + RL A PVK VP Q +D + + VHQG+ L P Sbjct: 56 RG--NKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SDQGVHQGMILAITP 111 Query: 121 LLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 TLD + + L ++LD++ DPHN G+I+R+A A DGII K + + ++ Sbjct: 112 YQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIV 171 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 K+++GA+EHIP R++NLT A+Q++ GF G + LI+G E Sbjct: 172 VKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNE 230 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+G+ ++ M + M G +++LN S AA + +Y Sbjct: 231 GRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQA 270 >gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] Length = 246 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 17/242 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103 ++ G + V AL R I ++ + A L+W V+ VP + +D+ Sbjct: 3 DYIIGKNPVIEALK-AGRDINKIWIAEGAQRHTVEPVLEWAKR--RGVLVQYVPKRKLDQ 59 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + E HQG+ + A +D + + ++LD + DPHN+GAI+R+A A Sbjct: 60 MA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADA 117 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + +AK+++GA+EH+P R++NL + ++ G G + + Sbjct: 118 VGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASA 177 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 178 QDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 237 Query: 277 QN 278 Sbjct: 238 YR 239 >gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X514] gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X513] Length = 247 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + N V T T+ + Sbjct: 2 EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ +A +D + + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSR-NHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K E+ + +A ++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 258 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + + P++ + Q +++ Sbjct: 14 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 73 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L L+ + L+++LD + DPHN+GA LRSA A Sbjct: 74 -EFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACLRSADATGV 132 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ Sbjct: 133 DFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAENL 192 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 193 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 252 Query: 280 FAK 282 + Sbjct: 253 RGQ 255 >gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L N K++ + + P + Sbjct: 2 KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDG-TPSHKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS223] gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS223] Length = 246 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102 + ++G+H V A L + +I +L + RL AN F ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L LD + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] Length = 257 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ + + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 245 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 17/242 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103 ++ G + V AL R I ++ + A L+W V+ VP + +D+ Sbjct: 2 DYIIGKNPVIEALK-AGRDINKIWIAEGAQRHTVEPVLEWAKR--RGVLVQYVPKRKLDQ 58 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + E HQG+ + A +D + + ++LD + DPHN+GAI+R+A A Sbjct: 59 MA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADA 116 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + +AK+++GA+EH+P R++NL + ++ G G + + Sbjct: 117 VGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASA 176 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 177 QDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 236 Query: 277 QN 278 Sbjct: 237 YR 238 >gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1] gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 244 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 9/243 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103 E+ +YG H V L +F+L + +A A+ + + +D Sbjct: 2 ESRLIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDG 61 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VG HQG+ L+ L+ + + L++VLD V DPHN+GA LR A A Sbjct: 62 MVGTRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ K + +A K ASGA + +PY+ ++NL AL++M G +G + +++K Sbjct: 121 AHAVVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEK 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + L+ + Sbjct: 181 SVYEVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARR 240 Query: 279 HFA 281 Sbjct: 241 QRG 243 >gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 247 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 ++G H V+A L + + + ++ R+ V+ +P + IVG Sbjct: 5 MIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVG 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 65 TRR-HQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K L Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + AL++G+EG+G+R T+ET + + M G +++LNVS A+ V LY + Sbjct: 184 EADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQR 242 >gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] Length = 256 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 9/247 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPP 98 + + + L G H V+A L ++ + + + R D L V+ V Sbjct: 8 NRAMAKQKLLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDA 67 Query: 99 QTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + + G + HQG+ + L LD + + LL+VLD V DPHN+GA LR Sbjct: 68 ERLRGMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRV 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I K S + +AK ASGA E +PYI ++NL L+++ G +G + Sbjct: 127 ADGAGAHAVIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K L +A+++GAEG+G+R T+ET + + M G +++LNVS A+ V L Sbjct: 187 DGTDKTLYDVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCL 246 Query: 274 YITQNHF 280 Y Sbjct: 247 YEAVRQR 253 >gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] Length = 247 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVG 106 L G H V+A L ++ + + N R D L V V + + + G Sbjct: 6 LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGVTLHPVDAERLRGMAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L LD + + LL++LD V DPHN+GA LR A Sbjct: 66 TDR-HQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLYEAVRQR 243 >gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 249 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E HQG+ + L L+ + L+++LD + DPHN+GA LRSA A Sbjct: 65 -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S + + V++K A GA E IP +R++NL A+ + G G + +++ Sbjct: 124 DFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243 Query: 280 FAK 282 + Sbjct: 244 RGQ 246 >gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 247 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 11/236 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105 +YG + V A+ + I ++ +K A + + V T T+ ++ Sbjct: 4 GDIIYGRNPVIEAIRSGKE-IEKIYVSKTAGGNISKIIGMAKEAGIVVSTADSDTLKRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ A + + + L++LD + DPHN+GAI+RSA AF Sbjct: 63 -QTPNHQGVVAVGALYKYFDVTDILNYAEEKKEKPFLLILDEITDPHNMGAIIRSAEAFG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR S +A + K+++GA+E+I ++SN+ ++ + G IG + ++K Sbjct: 122 VHGVIIPKRRSAGINATVVKASAGAVEYIKVAKVSNINSTIRDLKEKGLWIIGTDAKAEK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+ + +AL++G+EGKG+ E + + M G I +LN S AA++ +Y Sbjct: 182 SFEELDYDFPLALVIGSEGKGISRLVLENCDFVIKIPMKGKINSLNASVAASILMY 237 >gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H ++A L + + ++ +A A+ D + V + +D + G Sbjct: 6 LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L L+ + LL++LD V DPHN+GA LR A A Sbjct: 66 -NARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++GAEG+G+R T+E + + M G +++LNVS ++ + L ++ Sbjct: 185 HFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQR 243 >gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 47 ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 8 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 67 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 68 D-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ F G P Sbjct: 127 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDMQG-TP 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 186 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRN 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK353] Length = 242 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + + + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ ++ +YGVH V+ L N K++ + D + Sbjct: 2 KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG L + LD + ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 ALYITQNH 279 +Y + Sbjct: 239 LMYEVFRN 246 >gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 244 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YG + V AL R I ++L A + PV+ +++DK+V Sbjct: 2 DDIIYGRNPVIEALK-AERPINKILLQHGTTRAGDILNLARQRKIPVQEADKRSLDKLV- 59 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ A +D + +++LD + DPHN+GAI+R+A A Sbjct: 60 -QGNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELEDPHNLGAIIRTADAVGI 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R + + + K+++GA+E++ R++NL ++ + G +G + + + Sbjct: 119 HGVVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLKEKGCWVVGADAAAPQN 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++G+EGKG+ +E + L M G I +LN S AAAV Y Sbjct: 179 LWQADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQ 238 Query: 280 F 280 Sbjct: 239 R 239 >gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 246 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+ A LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 242 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + + + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] Length = 245 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L G H V+A + I ++ N +R+ +KT V Q +D + Sbjct: 6 ILAGFHAVNARIKLAPDSIKEIYFESNRKDSRMRTLLERATELKIKTYAVDSQRLDALA- 64 Query: 107 KEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K HQG+ + A + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 KGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S ++ + + A GA + +PYI ++NL L+ + G IG + ++K + Sbjct: 125 VIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWIIGTTDATEKSVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A ++GAEG G+R T E+ + + M G +++LNVS A+AV LY + + Sbjct: 185 DIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLRQRS 244 >gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 268 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 1/232 (0%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + + LYG H V+ AL NP R++ +LLAT+N LARL + P +TV P I +V Sbjct: 35 EDTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELRIAP-ETVRPGEISALV 93 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G +AVHQGL LE PL P ++ + +L+ LD + DPHN+GAI+R+A AF+ I+TT Sbjct: 94 GPDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTT 153 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R+SP+ + VLAKSASG LEH+P+I + NL +AL + GF IGL S++ PL + Sbjct: 154 ARHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTP 213 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++LGAEGKGLR +T+E MA L PG IK+LNVSNAAA+ LY Sbjct: 214 TRPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYALA 265 >gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] Length = 251 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + +G+H V A L ++ +L + + ++ + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKYSPERVIELWVLQGRDDKRFMPILESAAEYGISVQHATRKVLD 61 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151 HQG+ + L+ LD + + L++LD V DPHN+GA L Sbjct: 62 DK-SDGGQHQGVIARVKAVKQLNDKDLAVLLDKIEVEKTETPFLLILDGVTDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I + S + ++K A GA E +P +++NL ++ + G +G Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGIWIVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++++ L + +A+ +G+E KGLR T+E+ S+ + M G + +LNVS A V Sbjct: 181 AAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGV 240 Query: 272 ALYITQNHF 280 L+ Sbjct: 241 CLFEAVRQR 249 >gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK36] gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative [Streptococcus sanguinis SK36] gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 242 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter autotrophicus Py2] Length = 288 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 1/229 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+ A+ NP R+ +L AT+NA+ RL + L P + V P IDK++G +A Sbjct: 56 LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEE-GLTPPIAPEIVRPGDIDKLLGADA 114 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E L SP L + + L++VLD + DPHN+GAI+RSA AF+ I+TT R+S Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P+ + VLAKSASG LEH+P+ ++NL AL ++ G +GL S+ LE + Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA++L + + Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMARR 283 >gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 298 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 15/270 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 D + R R ++M+ + T+Q E F++G H AL +I ++ Sbjct: 27 DRRFNDRDRQPRQKREMRVEAEAVDDTAQTE--FVFGHHASVEALK-GETEINKVWLQSG 83 Query: 77 ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 ++ + ++ P +D++ HQG+ L A T+D + Sbjct: 84 LADKIRNEVMALAKKRGLIIQDAPKAKLDELT-NGQNHQGVVLSIAAYAYATIDDLFAKA 142 Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + +VLD + DPHN+G+ILR+A A GII KR + ++V+AK+++GA+EH Sbjct: 143 AEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEH 202 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R++NL ++++ G G D K + ALI+G EGKG+ P ++ Sbjct: 203 VPVARVTNLVQTVEQLKERGLWVFGTDMDGK-DYRRWDAAGPTALIIGNEGKGISPLLKK 261 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 T + M G +++LN S AA++ +Y Sbjct: 262 TVDETLTIPMVGHVQSLNASVAASLLIYQA 291 >gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 246 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ ++ K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALD 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156 V E HQG+ P L LD + S L++VLD V DPHN+GA LR+A Sbjct: 62 DKVSGEQ-HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADG 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGET 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L AL++GAEGKG+R T+ET + L M G + +L VS A V LY Sbjct: 181 DKTLYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEI 240 Query: 277 QNHFA 281 Sbjct: 241 VRQRG 245 >gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 246 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 11/239 (4%) Query: 49 LFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V AL + KI+ ++ + V+ VP + +D++ Sbjct: 3 DLIIGKNPVLEALKSGREMNKIWIAEGSQRGQMQSIIQLAKEMGITVQYVPKKKMDQLS- 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + A +D + + ++LD + DPHN+G+I+R+A A Sbjct: 62 -DGNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPHNLGSIMRTADAVGA 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR S S +A +AK+++GA+E++P R++NL + ++ G G + + Sbjct: 121 HGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKERGVWIFGTDAKGTQD 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q +AL++G+EGKG+ ++ + L M G + +LN S AA++ +Y Sbjct: 181 YRQLDGVIPLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239 >gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] Length = 281 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 14/277 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 +++ Y + R+ R ++ Q + T+ + + G H V AL + R+I ++ Sbjct: 4 RNNPYRQERQRERSSGGYRTTEQVQAEQATADNDGEIIAGKHPVLEALRSG-REINKVWI 62 Query: 74 TKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 + + L H V+ + +D + G E HQG+ + A ++ + Sbjct: 63 AEGSQKHLTAPIVAEAKQHGIIVQFADKRKLDSMAG-EVAHQGVIAQAAAYRYYEVEEIL 121 Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++LD + DPHN+G+ILR+A G+I KR S +A ++K ++GA Sbjct: 122 AAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGA 181 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 E++P R++NL ++ + G G +++ + + + + L++G E KG+ Sbjct: 182 AEYVPVARVTNLAQTIETLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E + L M G + +LN S AA V +Y Sbjct: 242 IREKCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278 >gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] Length = 247 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L N K++ + + P + Sbjct: 2 KTTKELSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDG-TPSHKWNTAGKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237 >gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160] Length = 242 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G E KG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSHKWNTAGKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1] Length = 276 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 132/262 (50%), Positives = 175/262 (66%), Gaps = 7/262 (2%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQP---ENLFLYGVHTVSAALNNPS 65 EKI K+S++ RR +RD K + +H S P ++LYG+H+V AL NP Sbjct: 3 EKIS--KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNPK 60 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 R L AT NAL RL+ + P P+K PP+ +D +VGK+AVHQG+ LET L Sbjct: 61 RVFNHLYATPNALKRLNITES-DVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPRH 119 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE Sbjct: 120 LSELTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGALE 179 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I YI + NL +AL+++H GF ++GL S+ + PLE + KIALILGAEGKGLR KT+ Sbjct: 180 LIDYITVRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKTR 239 Query: 246 ETATSMAHLHMPGIIKALNVSN 267 ET S+A L++PG IK+LNVSN Sbjct: 240 ETVHSLARLNIPGDIKSLNVSN 261 >gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 +YG V A+++ KI++ K ++ + + V + DKI E Sbjct: 9 IYGRKPVIDAIDSGV-KIYKAFVIKQNSKIVEEIIAKLNKANVEINFVDKRFFDKI---E 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ +E L + Q L++LD + DPHN+GAI+RSA +F DG+I +R Sbjct: 65 LNHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIRSAESFGFDGVIIPERR 124 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S S ++ K+++GA+ +I I + N A++++ GF GL+ ++ P++Q K Sbjct: 125 SASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGLAGEASSPIDQVDLKGK 184 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281 + LI+G EGKGL +E + ++ M G + +LN S A+A+A+Y QN F+ Sbjct: 185 VCLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQNGFS 239 >gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] Length = 242 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + D + +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTSKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + +A+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ AL K+ GF G + Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] Length = 295 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 27/289 (9%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRH------------TSQPENLFLYGVHTVSAALNN 63 + + HR +K+ S + + +YG HTV AAL N Sbjct: 6 QRPQPNSQGQRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLAALEN 65 Query: 64 PSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R + ++ + N + + + V Q +D+I HQG+ + Sbjct: 66 -ERSLNRIWMVPQLQSDNRFQK-GLSTAKANGTLIDRVSNQRLDQIA-PGTNHQGIVAQV 122 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 +P L + + ++++ + + DPHN+GAI+R++ A G+I +R + Sbjct: 123 SPYAYKELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVG 182 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K A+GALE P R+ NL AL+++ GF G S+ + +PL + + L Sbjct: 183 ITSTVMKVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGPVVL 242 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G+EG+GL +++ + + + G +LNVS A +ALY Sbjct: 243 VVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291 >gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 244 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V AL N R I +++ +K + + ++ V +D++ Sbjct: 3 LIEGRNPVIEALKNN-RPIEKIMVNKGSKEGSIKKIIGMAKDNNIIIQQVDRHKLDEMSE 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ T+ + L + ++LD + DPHN+G+I+R+A A Sbjct: 62 SHA-HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGA 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR S + ++AK+++GA+E++P +++N+ + ++++ G + Sbjct: 121 HGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIAAVDMGGDA- 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +AL++G+EG+G+ T+E + M G + +LN S A + LY Sbjct: 180 FYQTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239 Query: 280 FA 281 Sbjct: 240 RN 241 >gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] Length = 259 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 9/251 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NP+R +L+ TKNA +L DA + Sbjct: 10 KEQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKLQ-DAIDAAGITPEMA 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL +L+ V + L++LD V DPHN+GAIL Sbjct: 69 DPRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +G Sbjct: 129 RSAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLG 188 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ +++ ++ + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNA Sbjct: 189 LAGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNA 248 Query: 269 AAVALYITQNH 279 AAV+LY ++ Sbjct: 249 AAVSLYASRER 259 >gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] Length = 248 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103 + +LYG+H+VSA L ++ +L + R+ L H + +P +T+D Sbjct: 3 KQDWLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMDH 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156 + + AVHQG+A+ P + +++ L+ LD + DPHN+GA LRSA A Sbjct: 63 QLEEGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSADA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SD 215 +ITT+ S SA + K A GA E +P+I+++NL L+ + G G + S+ Sbjct: 123 AGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALSE 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K + + I +++GAEG GLR TQ+ + ++ M G +++LNVS A V L+ Sbjct: 183 GAKTIYETDLRGNIGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLFE 242 Query: 276 TQNHFA 281 + Sbjct: 243 ALRQRS 248 >gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102 + +YG + V A+N+ R+I ++ +K+A + V T T+D Sbjct: 2 KENENIIYGRNPVLEAINSG-REIEKIYVSKSAKGNISKIIKSARDKNIIVSTADNVTLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ G HQG+ + ++ + +++LD + D HN GAI+R+A Sbjct: 61 KMSG-NGNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS GI+ KR S ++ + K+++GA E++ ++SN+ +A+ + G +G S D Sbjct: 120 AFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVGSSVD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+ + IA+++G+EG+G+ ++ + + M G + +LN S AA++ +Y Sbjct: 180 AKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASIFMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VVRQR 244 >gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] Length = 246 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 + + G + V AL + R I ++L K L+ + + PV+ V ++KI Sbjct: 5 SDVIVGRNPVKEALKS-QRPINKVLVAKGKLSGSLAEICSLARQNGIPVQEVDRTALEKI 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 EAVHQG+A A L+ + +++LD + DPHN+GAI+R+A A Sbjct: 64 SA-EAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPHNLGAIIRTADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ T+R S + V+AKS++GA+E++P R++NL +++ + G G + K Sbjct: 123 HGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQENGIWVAGADMEGDKV 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + IA+++G EGKGL +E + L M G I +LN S A A+ Y Sbjct: 183 YWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNASVATALLAYEVVRQ 242 Query: 280 FA 281 + Sbjct: 243 RS 244 >gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 3502] gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 19397] gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. Hall] gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A3 str. Loch Maree] gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] Length = 257 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ + + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 242 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + D + + + ++ Sbjct: 2 ENNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. Langeland] gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. 230613] Length = 257 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ + + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] Length = 248 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L + I +L +N A R + V + + Sbjct: 6 LIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLHAM-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++G EG+G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQR 243 >gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435] gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 249 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILQNAKEQKLIVQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+ILR+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S + + +AK+++GA++H+P +R++NL + ++ G+ G +D+ Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum H04402 065] Length = 257 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ + + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] Length = 270 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG+H VSA L+ ++I +L +N RL VK + ++ + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + L L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] Length = 248 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + + +L A + + PV V +D + Sbjct: 6 LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLC- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A HQG+A L LD + LL++LD + DPHN+GA LR A A Sbjct: 65 RHARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G + L Sbjct: 125 VIAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A ++G EG+G+R T+E ++ + M G +++LNVS + + L T+ A Sbjct: 185 HYDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244 >gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC 29413] Length = 327 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 20/256 (7%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPF 91 + + E+ +YG H V +AL N R + ++ T RL +D + Sbjct: 65 PKVKEENESDIIYGRHPVLSALEN-QRGLNRIWVT----PRLRYDPRFHNLILQAKENGA 119 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145 + V P+ +D+I +A HQG+A + AP + +++V D + DPH Sbjct: 120 VIDEVEPKRLDQITD-QANHQGIAAQIAPYSYIEFYELIAQAKSVTDPVIIVADGITDPH 178 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G++ +R + ++ + K A+GALE+ P R+ NL+ AL+ + Sbjct: 179 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEA 238 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G ++ +PL I L++G+EG+GL TQ + + + + G +LN Sbjct: 239 GFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNA 298 Query: 266 SNAAAVALYITQNHFA 281 S AA +ALY + Sbjct: 299 SVAAGMALYEIFRQRS 314 >gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium profundum SS9] gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 245 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L ++ ++ K+ RL ++ + +D Sbjct: 3 NDMIFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQHAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P L LD + + LL++LD V DPHN+GA LR+A A Sbjct: 63 A-KGASHQGIIARVKPAKQLNEHDLDTILEGSENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 AVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] Length = 247 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 11/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104 N ++G+H V A L + + ++ K RL N V + + +D Sbjct: 3 NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERLLPILNELQMLGVTMQQAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V A HQG+ P LDA+ + + LL++LD V DPHN+GA LR+A A Sbjct: 63 V-HGANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSK 217 II K S +A +K A GA E +P +R++NL ++ + +G + ++ Sbjct: 122 AVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIWIVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 HDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] Length = 272 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 9/258 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPH 89 K +Q+ + + L G H V A+ +I + R D + Sbjct: 6 KHTEQHQRGTRPVEHRSDILAGRHAVMEAMKAGRGINRILLADGLHGSGVRELRDLAREY 65 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 V +D V + HQG+ AP+ +++ + LL++LD + Sbjct: 66 GVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLLDGIE 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ + Sbjct: 126 DPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRAL 185 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G D + ++ + L++G+EG+G+ T+E L M G I + Sbjct: 186 KEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCGKINS 245 Query: 263 LNVSNAAAVALYITQNHF 280 LN S A A+ +Y Q Sbjct: 246 LNASAAGAILMYEAQRQR 263 >gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 255 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF 91 M+ ++ + + G H V AAL + R + ++ + A A Sbjct: 5 MRDGARRRSAQGEEAADLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146 V+ VP +D++ HQG+ + AP LD V + L++VLD + DPHN Sbjct: 64 VVQFVPRSRLDEMAS---AHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G Sbjct: 121 FGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240 Query: 267 NAAAVALYITQNHFA 281 AA V LY A Sbjct: 241 VAAGVLLYEAVRQRA 255 >gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 271 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 16/265 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALN--NPSRKIFQLLATKNALAR 80 RD ++ Q+ +++ R T+ E L F+YG H L + K+F A+ Sbjct: 3 RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 A V VP + +D + HQG+ + A L+ + Sbjct: 63 AILKAANKRNILVSNVPKEKLDTL-SDGGNHQGVVMAIAAYKYAELEDIFKKAEEANEDP 121 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++MVLD + DPHN+G+ILR+A A G+I R + + V+AK+++GA+EH+P +R++ Sbjct: 122 IIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVRVT 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ + + G G + + Q IA+++G EGKG+ P ++ M Sbjct: 182 NISKTIDLLKERGVWVFGTDMKG-QSMWQMDAALPIAVVIGNEGKGVSPGVKKHLDGMIT 240 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M G +++LN S AA + +Y Sbjct: 241 IPMRGHVQSLNASVAAGLLMYQIYQ 265 >gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36] gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36] Length = 250 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 + ++G+H V + L + + ++ A K RL + V+ V T+DK Sbjct: 3 SELIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELNDIGISVQLVNRNTLDKK 62 Query: 105 VGKEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 H G+ L L+ LL++LD V DPHN+GA LRSA Sbjct: 63 CD-GGRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S ++V+ K A GA E +P I ++NL ++++ +G + Sbjct: 122 DAAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + L Q +A+ +GAE KGLR T+E + + M G + +LNVS A + L+ Sbjct: 182 EATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EVVRQR 247 >gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Ba4 str. 657] Length = 257 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 14/256 (5%) Query: 39 KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93 K+R Q E + G + V AL + I +++ K L ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMIAKGDLEGSIKIIISLAKEKGIVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V + +D I A HQG+ T P ++ + +++LD + DPHN Sbjct: 61 NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+ILR+A G+I KR + + + K+++GA E++ +++N+ + + K+ G Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + IAL++G+EG+G+ T+ + + M G I +LN S Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239 Query: 267 NAAAVALYITQNHFAK 282 A + +Y K Sbjct: 240 VAGGMLMYEILKQRMK 255 >gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] Length = 277 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 107/258 (41%), Positives = 161/258 (62%), Gaps = 5/258 (1%) Query: 25 RNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R RD K+ + +K + LYG+HTV AA N RK +L AT+NA R Sbjct: 17 RPSRDNKRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFANTERKRMKLYATENAQRR 76 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + ++ P++T+ P+ +DK+V ++AVHQG+ LE PL + + ++ ++L++ LD Sbjct: 77 LA-ERDVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPAYGPEHLKGARLVLALDQ 135 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAILRSAVA D ++TT+R++P E VLAKSASGAL+ I ++R+ N+ + Sbjct: 136 VTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKNMARFVS 195 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 +M F + L SD LE+ K L+LG+EGKG+R +E +++A L MPG I Sbjct: 196 EMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQGVREACSTLARLDMPGEI 255 Query: 261 KALNVSNAAAVALYITQN 278 ++LNVSNAA +ALY+ + Sbjct: 256 RSLNVSNAAVLALYVARQ 273 >gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK 1622] Length = 282 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 12/269 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----A 79 R R +++ + + F+YGV+ V AAL ++ +L + L A Sbjct: 10 RGGERASEEVPQRASRGERGGGEASRFVYGVNPVLAALRARPDEVERLFLVEGQLGARAA 69 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNS 132 V+ V + + + + VHQG+ +E L+ A+ Sbjct: 70 GELLSRAREFGIRVEKVTRERLGTLA-EGGVHQGVVVELRGFKYAELEDLLEAAKALGQP 128 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD + DPHN+GAI+RSA A G++ K + + +AK+++GA+EH R+ Sbjct: 129 PLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARV 188 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N++ AL+++ G D+K+P+ + +AL++GAEG G+R + Sbjct: 189 VNISRALEELKEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRL 248 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G + +LN S +A + LY Sbjct: 249 RIPMAGQVGSLNASVSAGILLYEVARQRG 277 >gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 248 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100 + + F+ G H AAL I ++ + A + V VP Sbjct: 2 KEEQKDFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D +V HQG+ + A T+D + ++LD + DPHN+G+I+R+ Sbjct: 62 LDNLV-NGQNHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR + ++V+AK+++GA+EH+P +R++NL ++++ G G Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + AL++G EGKG+ P ++T M + M G +++LN S AA++ + Sbjct: 181 MKG-TDFRKWSAKGATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] Length = 251 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 21/251 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 ++YG+H V + L + + +L + R+ L P+ + +D +V Sbjct: 3 YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQNQGVPMARESRKDLDDMV- 61 Query: 107 KEAVHQGLALET----------------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + HQG+ ET L +D + L++VLD V DPHN+GA Sbjct: 62 -KGRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLGAC 120 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA A D ++ K S S + K A GA E +P++R++N++ L + Sbjct: 121 LRSADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVWIF 180 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + +++K + +AL++GAEG GLR T+E + L M G + +LNVS A Sbjct: 181 GAAGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATG 240 Query: 271 VALYITQNHFA 281 V L+ Sbjct: 241 VCLFEVIRQRG 251 >gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ ++ +YGVH V+ L N K++ D + Sbjct: 2 KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLCGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG AL + LD + ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 ALYITQNH 279 +Y + Sbjct: 239 LMYEVFRN 246 >gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter denitrificans OCh 114] Length = 257 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 103/253 (40%), Positives = 148/253 (58%), Gaps = 7/253 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + E ++L+G+H V AL NP+R+ QL+ T NA A+L A Sbjct: 5 KWVVRKEQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAG-AIEAAGI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 + V P+ + +VHQG ALE PL +L+ V +++LD V DPHN+G Sbjct: 64 TPEVVDPRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I T+ +S E+ LAKSASGALE PY+R+ NL+D ++ + G+ Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYI 183 Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ LEQ I ++ +AL+LGAEG GLR KT+ET S+ + G +LNV Sbjct: 184 VLGLDGEASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243 Query: 266 SNAAAVALYITQN 278 SNAAA+ALY TQ Sbjct: 244 SNAAAIALYATQR 256 >gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] Length = 248 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 41 RHTSQPEN-LFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 R+ EN +YGVH V +L N K++ + D P+ P Sbjct: 2 RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152 +T+ + K AVHQG L + + + ++ LL++LD +NDPHN G+ILR Sbjct: 62 KTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A + GII K + + V+AK+++GA+EHIP R++NL AL K+ + GF G Sbjct: 121 TADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + P Q + K+ALI+G EG+G+ ++ M + M G +++LN S AAA+ Sbjct: 181 DMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAIL 239 Query: 273 LYITQNHF 280 +Y + Sbjct: 240 MYEVFRNR 247 >gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] Length = 248 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +LN N K++ + + + P +T+ + Sbjct: 10 NDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDTIKNLARDKKVSISWAPKKTLSDMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + + L++VLD + DPHN G+ILR+A A Sbjct: 69 EGAVHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADATKVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ K + + V+AK+++GA+EH+P R++NL+ L K+ GF G D P+ Sbjct: 129 GVVIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDG-TPV 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + K+ LI+G+EGKG+ ++ M + M G +++LN AAAV +Y H Sbjct: 188 QKWNTSGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRH 246 >gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] Length = 278 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 105/259 (40%), Positives = 147/259 (56%), Gaps = 2/259 (0%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 KD + R + ++ PE + +YG H V AL RK+ L AT+ Sbjct: 8 KDRQPRRERPGPVRDRPRGDPSRVPFRGPSPEVVTIYGAHAVREALKARRRKLLALYATE 67 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQL 134 AL R+ D + V + + + +G EAVHQGL LE PL + D S + Sbjct: 68 TALPRIA-DLARGAGVEPRLVDGRDLSRHLGDEAVHQGLLLEARPLPEAGVGDIEPKSGI 126 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD + DPHN+GAILR+A AF D +I T+R+SP + VLAK+ASGALEH+ + + N Sbjct: 127 VLALDQITDPHNVGAILRTACAFGVDALIITERHSPEFTGVLAKAASGALEHVTIVSVVN 186 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L AL ++ G+ +GL S+ +PLE +AL+LGAEGKGLR T+E ++A L Sbjct: 187 LARALDELRGAGYGVVGLDSEGAEPLETIALPKPLALVLGAEGKGLRRLTRERCDAIARL 246 Query: 255 HMPGIIKALNVSNAAAVAL 273 +PG IK+LNVSNA A AL Sbjct: 247 DLPGPIKSLNVSNACAAAL 265 >gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] Length = 271 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 112/263 (42%), Positives = 162/263 (61%), Gaps = 2/263 (0%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLAT 74 K + R KK R PE + LYG+HTV AA N RK +L AT Sbjct: 5 KKPSRPAGKPGFRGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLFAT 64 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 NAL RL+ + + PV+++ P+ +D++V K+AVHQG+ LE PL + + ++ ++L Sbjct: 65 DNALRRLE-ERGVKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKGARL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V DPHN+GAILRSAVA D ++TT+R++P E +VLAKSASGAL+ I ++R+ N Sbjct: 124 VLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVRVKN 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + +M GF I L SD LE+ +DK L+LG+EGKG+R +E A L Sbjct: 184 MARFIAEMKDEGFSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLTARL 243 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 MPG I++LNVSNAA ++LY+ + Sbjct: 244 DMPGEIRSLNVSNAAVLSLYVAR 266 >gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 9/238 (3%) Query: 49 LFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V+ L N K++ + D + + + ++ Sbjct: 11 DIVYGVHAVTESLLANTGNKLYIQEDLRGKNVDHIKDLATSKKVSISWTKKKALSEMTA- 69 Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG L + LD + + LL++LD + DPHN G+ILR+A A G Sbjct: 70 GAVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVCG 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G P Sbjct: 130 VIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG-TPSY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 KWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246 >gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 272 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G H + A+ +I + + D H V TV +D +V + Sbjct: 27 ILAGRHAIIEAIKAGRGINRILLADGVRGSGVNELRDLAREHGIMVDTVGRSKLDALVSQ 86 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG AP+ ++ V LL++LD + DP N+GA+LR+A A Sbjct: 87 DVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGVH 146 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G ++ Sbjct: 147 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEQGFWIAGADMGGEEIY 206 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG+G+ T++ L M G I +LN S A A+ +Y Q Sbjct: 207 DRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKINSLNASVAGAILMYEAQRQR 266 >gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC 7002] Length = 388 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPP 98 T + +N +YG H V + L + R + ++ T A + V Sbjct: 129 TPEEDNDLIYGKHAVLSVLES-ERPLNRIWVTSRLRHANRFHTLLQAAKNQGTVIDEVSM 187 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 +D + VHQG+A++TAP L + S ++++ D + DPHN+GAI+ Sbjct: 188 SRLDYLT-NRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAII 246 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I +R + ++ + K A+GALEH P R+ NL+ A++++ GF G Sbjct: 247 RTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYG 306 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + K L I L++G+EG+GL TQ+ + + M G +LN S AAA+ Sbjct: 307 TAAGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAI 366 Query: 272 ALYITQNH 279 ALY Sbjct: 367 ALYEVYRQ 374 >gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] Length = 248 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 10/248 (4%) Query: 41 RHTSQPEN-LFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 R+ EN +YGVH V +L N K++ + D P+ P Sbjct: 2 RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152 +T+ + K AVHQG L + + + ++ LL++LD +NDPHN G+ILR Sbjct: 62 KTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A + GII TK + + V+AK+++GA+EHIP R++NL AL K+ + GF G Sbjct: 121 TADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + P Q + K+ALI+G EG+G+ ++ M + M G +++LN S AAA+ Sbjct: 181 DMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAIL 239 Query: 273 LYITQNHF 280 +Y + Sbjct: 240 MYEVFRNR 247 >gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] Length = 248 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 11/241 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 Q + F+ G H AAL + K+F K+ + A V VP Sbjct: 2 KEQKTDDFVIGRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKTK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D ++ HQG+ L A L+ + ++LD + DPHN+G+ILR+ Sbjct: 62 LD-LLSDGQNHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR + ++ +AK+++GA+E++P R++NL + ++ + G G Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + AL++G EGKG+ ++ M + M G +++LN S AA++ + Sbjct: 181 MKG-QDFRNWDAKGPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASLLI 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 234 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108 +YG V L+ KI++ K ++ + V + DKI + Sbjct: 4 IYGRKPVLDTLDTDI-KIYKAYILKQNSKLVNKIIGKLEEKNIEISFVDKRFFDKI---D 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ +E LD + + + L++LD + DPHN+GAI+RSA +F DG++ +R Sbjct: 60 INHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAIIRSAESFGFDGVVIPERR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S ++ + K+++GA+ +I R+ NLT +++ + GF GL+ ++ +++ K Sbjct: 120 SASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIYGLAGEADSSIDKADLTGK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G EG G+ ++ + ++ M G + +LN S AA +++Y Sbjct: 180 VGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230 >gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803] gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803] Length = 384 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 13/251 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVP 97 +Q LYG H V AAL+ R++ ++ T + R + V V Sbjct: 117 EQAQEALDLLYGHHAVLAALD-GDRQLNRIWITSHLRHDIRYRTKIQTAKANGTVVDEVD 175 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +++I A HQG+A + AP L + + +L+++D + DPHN+GAI Sbjct: 176 NFRLNQIT-HNANHQGIAAQVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAI 234 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A AF G++ +R ++ + K A+GALEH P R+ NL+ AL+ + GF Sbjct: 235 IRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIY 294 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + + L Q + + L++G+EG+GL TQ+ + + + G +LN S AAA Sbjct: 295 GTVAGKQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAA 354 Query: 271 VALYITQNHFA 281 ++LY Sbjct: 355 ISLYEIFRQRG 365 >gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 277 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 14/275 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--- 73 Y K + + R K+ +K + + G ++V A+ R I ++L Sbjct: 6 KKDYKKAKTSQRSDVKLNG--RKEERDGAKDLDRIEGRNSVLEAIK-AGRTINKILVPKG 62 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 K R V+ +DKI A HQG+ A +D + Sbjct: 63 EKEGSIRQIIALARERGIVVQETDRSNLDKISTTHA-HQGVIAYVAFKDYVEVDDILKIA 121 Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +++LD + D +N+G+ILR+A A G++ KR + +A ++K+++GA+E+ Sbjct: 122 QDKGEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEY 181 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R++N++ ++ + +G +KP + +AL++G+EG+G+ E Sbjct: 182 VPVARVTNISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSE 241 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ M G I +LN + AAA+ +Y + Sbjct: 242 KCDFIVNIPMQGKISSLNAAVAAAIIMYEIRRQRN 276 >gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] Length = 263 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 10/244 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 + + G + V AL + + ++A + ++ + +K V + +D Sbjct: 18 EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + + HQG+ P ++ + +++LD + DPHN+G+I+R+A Sbjct: 78 SMSITGS-HQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR + + + K+++GA E++ +++NL A+ + G G Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMS 196 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMYE 256 Query: 276 TQNH 279 Sbjct: 257 VLKQ 260 >gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Achromobacter xylosoxidans A8] Length = 245 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ + + + + VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPDSIKEIYVEASRRDKRMQTFIEQAEKAGCRLHPVPMERLDGL-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A + + A GA + +PY+ ++NL ++ + G +G + + Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 185 QIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] Length = 309 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 13/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR NH K+ QS ++ ++ L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131 RL + + VP +D++ G +HQG+AL+ P + D + Sbjct: 99 ERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGS 157 Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 278 VVSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] Length = 270 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKE 108 +YGVH V A + + +A RL L K V P T+D++ + Sbjct: 19 VYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGNAKVVNQPRDTLDRLA-QG 77 Query: 109 AVHQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG+ PL ++ + LL+VLD + D HN GA LRSA A Sbjct: 78 AVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGITDVHNFGACLRSADAAGA 137 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ K + +A + K A GA E +P R++NL +L +M G G + +++ Sbjct: 138 HGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLARMKELGVWVTGTAGEAEAS 197 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + AL++GAEGKG+R T+E + L M G + +LNVS A + L+ Sbjct: 198 VYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVASLNVSVATGICLFEAVRQ 257 Query: 280 FA 281 A Sbjct: 258 RA 259 >gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella amazonensis SB2B] gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B] Length = 240 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V + L + ++ +L T R+ + + +T+D+ + Sbjct: 2 FGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDEKA-ES 60 Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P L L+A+ ++ L++LD V DPHN+GA LR+A A G+ Sbjct: 61 TQHQGIIIRVRPAKVLTENDLEALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHGV 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + ++K A GA E +P +++NL ++++ G G + ++ L + Sbjct: 121 IVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTLYE 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 ANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQR 238 >gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] Length = 251 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 12/248 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99 + + G H V AL + R I ++ + A L H V+ V + Sbjct: 3 ERYNQEEMIAGKHPVMEALRSG-RDINKIWIAEGAQKSLTQPIVAEAKQHGVIVQFVDKR 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 +D +V + HQG+ + A ++ + + L++LD + DPHN+G+ILR Sbjct: 62 KLDTMV-EGVQHQGVVAQAAAFAYAEIEDLLARARELNETPFLLILDEIEDPHNLGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR S +A + K+++GA EH+P R++NL + ++ G G Sbjct: 121 TAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTIDRLKEEGVWVAGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + + + +A+++G EGKG+ +E + L M G + +LN S AA V Sbjct: 181 DVSAPQDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLPMHGRLNSLNASVAAGVL 240 Query: 273 LYITQNHF 280 +Y Sbjct: 241 MYEVVRQR 248 >gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424] gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424] Length = 270 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 137/268 (51%), Gaps = 17/268 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 +++N++ YK+++S N++ ++ E + G + + A+ + R+I ++L + Sbjct: 1 MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSG-REINKILFQEGIE 59 Query: 79 A---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---- 131 + + + VP + +D HQG+ AP LD V N Sbjct: 60 KGRLKAIFSIANEKKIVCQEVPKRKLDN--STTERHQGVIAFVAPYNYFELDEVLNKIEI 117 Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L++LDH+ DPHN+GAI+RSA A G+I KR + S K+++GA+EH+P Sbjct: 118 NKNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPV 177 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 IR+S+L DA++K+ GF G + + + + K+ + +++G EG+G+ Sbjct: 178 IRVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNEC 237 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + HL M G +++LNVS AA + +Y Sbjct: 238 DFLYHLPMLGKVQSLNVSVAAGIVMYER 265 >gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] Length = 249 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L ++ I +L +N R + V ++ + Sbjct: 6 LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAMA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G + L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQR 243 >gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 145/249 (58%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++R + E ++L+G+H V AL NP R+ +L+ T+NA +L DA + V Sbjct: 10 KEQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAASGIEPELV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 + + +VHQG+ALE PL L R + +++LD V DPHN+GAILRS Sbjct: 69 DARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLLLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +GL Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188 Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + +E + +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 189 GEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY +Q H Sbjct: 249 IALYASQPH 257 >gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] Length = 270 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG+H VSA L+ ++I +L +N RL VK + ++ + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + L L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 248 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 15/243 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102 +N + G + V AL + R + +++ T+ +++ A V+ VP +D Sbjct: 2 DNEVIMGRNPVMEALKSG-RSVNKVMVTEQIQGSTFQKINQLAREAGTI-VQKVPRSKLD 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ A +LD + ++LD + DPHN+G+ILRSA Sbjct: 60 QM--ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPHNLGSILRSAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR S +A +AK+A+GA+EHIP +R++N+++ + ++ +G ++ Sbjct: 118 ATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKERNVWIVGTEAE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + Q + I +++G EGKG+ ++ L M G + +LN S A + LY Sbjct: 178 ADQDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYE 237 Query: 276 TQN 278 Sbjct: 238 VYR 240 >gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus thermophilus ND03] Length = 247 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L N K++ + + P + Sbjct: 2 KTTKESILDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTAS-HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] Length = 251 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNNP-SRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F++G H L N + KI ++ + A + V+ VP +D Sbjct: 5 KGDFVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLD 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+V +A HQGL L + LD + + + L++LD + DPHN+G+ILRSA A Sbjct: 65 KLV-PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADA 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + Sbjct: 124 TGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEG 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 184 -QDYRYWDTKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQM 242 Query: 277 QNH 279 N+ Sbjct: 243 LNN 245 >gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] Length = 275 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 1/233 (0%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG+HTV AA N RK +L AT+NA RL + + PV+ P+ +D++V Sbjct: 40 EGPVLLYGLHTVEAAFANKDRKRLKLYATENAKNRLQ-ERGVVIDVPVEDKRPKELDRMV 98 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 K+AVHQG+ LE PL + + ++ ++L++ LD V DPHN+GAILRSAVA D ++TT Sbjct: 99 TKDAVHQGMILEADPLPAYGAEHLKGARLILALDQVTDPHNVGAILRSAVALDADAVVTT 158 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R++P E VLAKSASGAL+ I ++R+ N+ + +M GF I L SD LE Sbjct: 159 ERHAPEEGPVLAKSASGALDMIKHVRVKNMARFITEMKEQGFGCIALDSDGHASLEDTDF 218 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 DK L+LG+EGKG+R +E +A L MPG I++LNVSNAA ++LY+ + Sbjct: 219 TDKTVLVLGSEGKGVRQGVREACGLLARLDMPGEIRSLNVSNAAVLSLYVARQ 271 >gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150] gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150] Length = 250 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R +L + ++ + D + ++ V +++ Sbjct: 5 YVYGLHAVSALLANPHRMTKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHKMNQRFA 64 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + L L++ ++ L+++LD + DPHN+GA LR+A A Sbjct: 65 -DFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTADATGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ K S S + V++K A GA E +P +R++NL +++ + G G + ++ Sbjct: 124 DFVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAGEATGT 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IA++LGAEG+GLR T+E S+ L M G + +LNVS A V+LY Sbjct: 184 LYQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 248 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100 + + F+ G H AAL I ++ + A + V VP Sbjct: 2 KEEQKNFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D +V HQG+ + A T+D + ++LD + DPHN+G+I+R+ Sbjct: 62 LDNLV-NGQNHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR + ++V+AK+++GA+EH+P +R++NL ++++ G G Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + AL++G EGKG+ P ++T M + M G +++LN S AA++ + Sbjct: 181 MKG-TDFRKWSAKGATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 259 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%) Query: 37 NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91 +K + T++ + + F++G H V AAL + I +L K+ + Sbjct: 2 AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V T P Q +D ++ + HQG+ L P TLD + ++LD++ DP Sbjct: 62 LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+ILR+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + D + + AL++G EGKG+ P + + + M G +++LN Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLN 239 Query: 265 VSNAAAVALYIT 276 S AA + +Y Sbjct: 240 ASVAAGILMYQA 251 >gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 247 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 13/238 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G + V A+ +RK+F++ +K++ H + VP +DK+V Sbjct: 9 GKNPVVEAIR-GNRKVFRIYISKDSNKNFQDEMLKLAQQHNINLDKVPLDRLDKMVPTTE 67 Query: 110 VHQGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ ET P LD V + L++LDH+ DP N GAI+R+A A DG Sbjct: 68 -HQGIVAETEPFKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVGVDG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + + K++SGA EH+P I++SNL + K+ +G D + + Sbjct: 127 VIIPKRRSVDVNPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDRGIF 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E N +AL++G E G+ P ++ +A++ M G + +LN S A AV LY Sbjct: 187 EENYNIPLALVVGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLYEIYRQ 244 >gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] Length = 310 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 22/273 (8%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L R + K + + + S+ T + +YG H V AAL R+I ++ + +L Sbjct: 25 LERRYAKPKPVGT-SVSSQDTEVEDPDLIYGRHPVIAALE-GDRQINKIWV----MPKLR 78 Query: 83 WDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----- 129 +D+ + + V P + +I K A HQG+ + +P L+ + Sbjct: 79 YDSRFHSLLTQAKANGTVIDEVDPHRLSQIT-KGANHQGIVAQISPYAYVELEELIEQAK 137 Query: 130 --RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ ++++ D + DPHN+GA++R+ A G++ +R + ++ + K A+GALEH+ Sbjct: 138 ARSSAPVILIADGITDPHNLGAMIRTTEAMGAQGLVIPQRRAAGITSTVMKVAAGALEHL 197 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R+ NL+ AL+++ GF G +DS K L + L++G+EG+GL TQ++ Sbjct: 198 PVARVVNLSRALEQLKEAGFWLYGTMADSGKLLHTIDFKGAVGLVVGSEGEGLSLLTQKS 257 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + G +LN S A A+ALY Sbjct: 258 CDALVSIPLAGKTPSLNASVATAIALYEVFRQR 290 >gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 248 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 ++G+H V + L ++ +L ++ + + +P Q +DK Sbjct: 7 VFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRPQWIPRQALDKRAEF 66 Query: 108 EAVHQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L S ++ + + L +VLD+V DPHN+GA +R+A A Sbjct: 67 -GNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTADAAGAT 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + K A GA+++IP + ++NL AL+ + +G + ++ K L Sbjct: 126 AVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGEADKSL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQN 278 Q +AL++GAEGKG+R T+ET +A + + G + +LNVS A+ V L+ Q Sbjct: 186 YQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFEAVRQR 245 Query: 279 H 279 H Sbjct: 246 H 246 >gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL B-30929] gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri NRRL B-30929] Length = 266 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 13/256 (5%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHP- 90 +S + +S + F+ G H V AAL NP K+F K+ + L H Sbjct: 6 RSQDHRSDDSQDQPEEFVIGRHPVVAALKSENPVNKLFIQSGIKDDDNIISEIMKLAHKK 65 Query: 91 -FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142 + VP Q +DK+ HQG+ L A T+D + + ++LD++ Sbjct: 66 RLVISKVPKQKLDKL-SNNQNHQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFVILDNIE 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+G+I+R+A A GII K + +A ++K+++GA+E +P R++NL+ ++++ Sbjct: 125 DPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLSATIKEL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G + IA+I+G EGKG+ P ++ M + M G I++ Sbjct: 185 KQRGMWVFGTDVSG-TDYRRWDAKGSIAVIIGNEGKGISPLLKKQVDEMLTIPMVGDIQS 243 Query: 263 LNVSNAAAVALYITQN 278 LN S AA++ +Y N Sbjct: 244 LNASVAASILIYQGFN 259 >gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 313 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 26/291 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ +H KL + RD + RH + + G + V L Sbjct: 34 KGPTPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 ++ P+ ++ TKN ARL + H P+ V +D++ G +HQG+ L+ Sbjct: 83 HSKVPATSLYIAEGTKN-DARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + +++VLD++ DP N+GA++RS AF G++ +R S Sbjct: 141 IPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S +AV ++++G +P + +N+T AL++ G+Q +GL + L+ + Sbjct: 201 SVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVV 260 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +++G+EGKG+ +ET S+ + M +++LN S AA V L + Q Sbjct: 261 IVVGSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRR 311 >gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 129/258 (50%), Positives = 171/258 (66%), Gaps = 9/258 (3%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69 +DS YA+LRR +RD K SF Q S + QP ++LYG+H V AAL NP R + Sbjct: 7 QDSRYARLRRQYRDIKG--SFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILR 64 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L AT NAL RL+ + + P + + P+ ++ VG EAVHQG+ LET PL S +L + Sbjct: 65 HLYATPNALKRLNINESNI-PCSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSEL 123 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I Y Sbjct: 124 TNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEY 183 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + NL+ AL+++ F + GL S+ PLE + +KI+LILGAEGKGLR KT+E Sbjct: 184 ITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENVY 243 Query: 250 SMAHLHMPGIIKALNVSN 267 S+ L +PG IK+LNVSN Sbjct: 244 SLVRLDLPGDIKSLNVSN 261 >gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63] Length = 252 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 13/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQT 100 ++ + + G + VS A+ + R I ++L K + PVK V Sbjct: 9 TEQKPDVIAGRNPVSEAVRSN-RPIDKILVAKGEKSGAIVGILAKARDKKIPVKEVDRTK 67 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D + G A HQG+ A T+D + + ++VLD V DPHN+GAI+R+ Sbjct: 68 LDYVSG-GATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNLGAIIRT 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A GII KR S S +AK+++GA+E++ R++N+ L ++ G G Sbjct: 127 AECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTNIAVTLDELKEKGVWVYGAD 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D ++ + A+++G EGKG+ +E +A L M G I +LN S AA + + Sbjct: 187 MDG-TDYDECDFSGACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASVAAGILM 245 Query: 274 YITQNHF 280 Y + Sbjct: 246 YKAMKNR 252 >gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang] Length = 259 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%) Query: 37 NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91 +K + T++ + + F++G H V AAL + I +L K+ + Sbjct: 2 AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V T P Q +D ++ + HQG+ L P TLD + ++LD++ DP Sbjct: 62 LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+ILR+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + D + + AL++G EGKG+ P + + + M G +++LN Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLN 239 Query: 265 VSNAAAVALYIT 276 S AA + +Y Sbjct: 240 ASVAAGILMYQA 251 >gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] Length = 247 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + F+ G + V AL + R I ++ + + V+ VP Q I+ + Sbjct: 3 SEFIAGRNPVLEALKSG-RDINKIWIAEGSQKGSMGQITSLAKEKKVLVQFVPKQKIEGM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 62 VRD--NHQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPHNLGSIMRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+EHIP R++NL + ++ G G + Sbjct: 120 GVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKERGVWVAGTDAKGA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I L++G+EGKG+ ++ + + M G + +LN S AA++ +Y Sbjct: 180 DDYRRLDGTLPICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTSLNASVAASILMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 12/260 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--- 89 M+ + +S+ + ++YGV+ V AL ++ +L + L L Sbjct: 1 MRDRSSQSQEPRERGERYVYGVNPVLEALRARPDEVERLFIVEGQLGSKAAAEILSRARD 60 Query: 90 -PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHV 141 + V + + + + VHQG+A E P L A + L++VLD + Sbjct: 61 SGIRTERVARERLTTLA-EGGVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGI 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAI+RSA A GI+ K + + V+AK+++GA+EH P R+ N++ AL++ Sbjct: 120 QDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEE 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + SK+PL + +AL++GAEG G+R + + M G + Sbjct: 180 LKEAGLWVAAADTHSKEPLWGARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVG 239 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LN S +AAV LY Sbjct: 240 SLNASVSAAVLLYEVARQRG 259 >gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] Length = 313 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 26/291 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ +H KL + RD + RH + + G + V L Sbjct: 34 KGPTPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 ++ P+ ++ TKN ARL + H P+ V +D++ G +HQG+ L+ Sbjct: 83 HSKVPATSLYIAEGTKN-DARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + +++VLD++ DP N+GA++RS AF G++ +R S Sbjct: 141 IPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S +AV ++++G +P + +N+T AL++ G+Q +GL + L+ + Sbjct: 201 SVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVV 260 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +++G+EGKG+ +ET S+ + M +++LN S AA V L + Q Sbjct: 261 IVVGSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRR 311 >gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 9/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVG 106 +++G H +++ L I ++ N R +L + + + K+ G Sbjct: 6 YIFGFHAITSRLRQHPDSIKEIYLDTNRHDQRARDLMSLAETTSTRLILCEQDRLCKMTG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A L L L+ + LL+VLD V DPHN+GA LR A AF Sbjct: 66 TTR-HQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 125 VVVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLD 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A +LGAE G+R T+E + + M G I++LNVS +A + L+ T Sbjct: 185 SVTLTRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQ 242 >gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 259 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%) Query: 37 NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91 +K + T++ + + F++G H V AAL + I +L K+ + Sbjct: 2 AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V T P Q +D ++ + HQG+ L P TLD + ++LD++ DP Sbjct: 62 LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+ILR+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + D + + AL++G EGKG+ P + + + M G +++LN Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLN 239 Query: 265 VSNAAAVALYIT 276 S AA + +Y Sbjct: 240 ASVAAGILMYQA 251 >gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] Length = 248 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKI 104 + G + V AL + R I ++L K L R V+ V +D + Sbjct: 3 EDIIAGRNVVMEALRSG-RAINKILVAKGERHGLMREIVGLAREQGLVVQEVDAAKLDAL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ AP+ +D + + L++LD + DPHN+GAILR+A A Sbjct: 62 A-MGVRHQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADAT 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ KR S SA +AK+++GA+E++P RI N+ L+K+ G +G Sbjct: 121 GVHGVLLPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + +++G+EG+G+ T+E + + M G + +LN S A ++ LY Sbjct: 181 KAYYETDLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus capsulatus str. Bath] Length = 250 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 ++G+H AAL+ KI + + + RL A V+ V + +D++ Sbjct: 7 VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66 Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ LE L TLDA L +VLDHV DPHN+GA LR+ A Sbjct: 67 RK-HQGILLELDLPGEQGEAELLDTLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGVK 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ TK S + +AK ASGA E +P R++NL L + G+ +G + ++++ L Sbjct: 126 GLVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERTL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++GAEG GLR T+E + + M G +++LN+S A + LY Sbjct: 186 YELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQR 245 Query: 281 AK 282 ++ Sbjct: 246 SR 247 >gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] Length = 323 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 24/293 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + S +S ++ ++ HR + K ++ +YG H V +AL Sbjct: 28 IPSSIRSPRVGERDKKPVSRGTSPHRIDPHVSPVASKP----PEDSDLIYGRHPVLSALE 83 Query: 63 NPSRKIFQLLATKNALARLDWDANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGL 114 R + ++ T RL +D H + V P+ +D+I + A HQG+ Sbjct: 84 -GERGLNRIWIT----TRLRYDHRFHHLLLQAKENGTVIDEVEPKRLDQITDR-ANHQGI 137 Query: 115 ALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A + AP L + +++V + + DPHN+GAI+R+A A G++ +R Sbjct: 138 AAQVAPHDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRR 197 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ + K A+GALE+ R+ NL+ AL+++ GF G ++ +PL + Sbjct: 198 ASGITSTVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATTGSEPLHTVKFSGP 257 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I L++G+EG+GL TQ + + + + G +LN S AA +ALY + Sbjct: 258 IVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRS 310 >gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] Length = 335 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 20/256 (7%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-------- 91 + +N +YG H V +AL N R + ++ T RL +D + Sbjct: 73 PKPQEDNDNDIIYGRHPVLSALQN-QRGLNRIWVT----PRLRYDPRFHNLILQAKDNGA 127 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145 + V + +D+I +A HQG+A + AP L + +++V D + DPH Sbjct: 128 VIDEVDTKRLDQITD-QANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVADSITDPH 186 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G++ +R + ++ + K A+GALE+ P R+ NL AL+ + Sbjct: 187 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRALEDLKEA 246 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G ++ +PL I L++G+EG+GL TQ + + + + G +LN Sbjct: 247 GFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNA 306 Query: 266 SNAAAVALYITQNHFA 281 S AA +ALY + Sbjct: 307 SVAAGMALYEIFRQRS 322 >gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] Length = 244 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + + AL N R I +++ +K + + ++ V +D++ Sbjct: 3 IIEGRNPIIEALKNN-RSIEKIMVNKASKEGSIKKILAMAKENKVIIQEVDRHKLDEMSE 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ T+ LD + ++LD + DPHN+G+I+R+A A Sbjct: 62 SHA-HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGA 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I KR S + ++AK+++GA+E++P +++N+ + ++ + G + D Sbjct: 121 HAVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIAAVDMDG-HT 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q+ + L++G+EG+G+ ++ + M G + +LN S A + LY Sbjct: 180 FYQQNLGGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239 Query: 280 FA 281 Sbjct: 240 RN 241 >gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 247 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103 + +YG H++ A L + + ++ +N L L + + Q +D Sbjct: 2 SDIIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSA-GLSILFTSRQYLDA 60 Query: 104 IVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G VHQG+ + P L ++ ++VLD + DPHN+GA LRSA A Sbjct: 61 QTG-GGVHQGIMAKVCSAHQYQENELPALLNSLDTPFVLVLDGITDPHNLGACLRSAEAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S +A + K+ASGA E+IP IR++NL L+ + + IG + ++K Sbjct: 120 GVQIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGTAGEAK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + +AL++G+E KGLR T+E + + M G + +LNVS A V L+ Sbjct: 180 KTVYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAV 239 Query: 278 NHFA 281 Sbjct: 240 RQRN 243 >gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 241 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 137/244 (56%), Gaps = 7/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L P K V Sbjct: 2 QNKKLDSKNYYYIYGKHPVFSALNNPKRQIEDILCTQMIF---DANKKLISSKPYKIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S ++ + +N + + +LD + DP NIGAI+RSA Sbjct: 59 DVLSKLL-ENQTHQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF+ D II SP+E+ +AK+A G LE I I+++NL + + GF IGL+ + Sbjct: 118 AFNIDAIILPLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ +DKIALI G+E KG+R QE +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHS 237 Query: 276 TQNH 279 +H Sbjct: 238 LWDH 241 >gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus DSM 2379] Length = 251 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKI 104 ++GV+ V AL R+IF L A RLD L V+ + + + ++ Sbjct: 3 EELVFGVNPVREALR-GKREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTRM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+AL+ AP LD + + L+VLD + DPHN+GA++R+A Sbjct: 62 CGS-SHHQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAACA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ + + + + K+++GA+E I +++N+ +L+K+ G+ GLS ++ Sbjct: 121 GASGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + + KIAL++G EG+G+RP ++ ++ + + G + +LN S A +ALY Sbjct: 181 ASLYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEVA 240 Query: 278 NHF 280 Sbjct: 241 RCL 243 >gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325] gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325] Length = 271 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 139/269 (51%), Gaps = 18/269 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +++N+ YK+++ N++ + Q P+ + G + + A+ + R+I ++L + Sbjct: 1 MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSG-REINKILFQEGI 59 Query: 78 LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131 + + + VP + +D + HQG+ AP LD V N Sbjct: 60 EKGRLKSIFAIANEKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLD 117 Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S L++LDH+ DPHN+GAI+R+A A GII KR + S K+++GA+EH+P Sbjct: 118 INKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR+S+LTDA++K+ GF G + + + + K+ +A+++G EG+G+ + Sbjct: 178 VIRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266 >gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 14/243 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIV 105 ++G++ VS AL R+++++ A + RL+ L ++ + + +D++ Sbjct: 3 ELVFGINAVSEALK-GQRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDELC 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E HQG+ E L V L++LD + DP N+GAI+R+A Sbjct: 62 --EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII S + +++ ++GA+EH+ IR +NL + ++ + GF +G + ++ Sbjct: 120 GVDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKAR 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL++G EG+G+R +E + + M G + +LN S AAA+ +Y Sbjct: 180 QSYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEVL 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. CC9311] Length = 589 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 23/269 (8%) Query: 31 KKMQS--FNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIFQLLATKN-----A 77 K++ S + K R S P + L+G H AAL R I ++ T Sbjct: 225 KRLSSPRLDDKPRGESSPHAAEAVADDLLWGRHATQAALE-AGRPIHRIWCTSELRSASK 283 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVR 130 +L DA V+ V + ++ G AVHQG+ L+TA + L+ A+ Sbjct: 284 FLQLLKDAK-SSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETFDLEDLVKGCSALD 341 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A+GALEH+P Sbjct: 342 EAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVA 401 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R+ NL +L+ + S G++ IGL+ + LE+ + + ++ G+EG+GL T+ Sbjct: 402 RVVNLNRSLETLKSSGYRVIGLAEEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQ 461 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G+ +LN S A A+ LY Sbjct: 462 LIRIPLRGVTPSLNASVATALCLYEVARR 490 >gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 4/234 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVG 106 +LYG H V AAL NP+R +L+ T+NA L A LP PV + + + I ++ Sbjct: 53 YLYGFHAVLAALANPARLAERLVLTRNAETELARQGARLPADLPVRLEIMENEDIAALLP 112 Query: 107 KEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 AVHQG+AL +PL ++A + ++VLD V DPHN GAILRSA F +ITT Sbjct: 113 AGAVHQGIALRASPLPDLDVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGALITT 172 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R SPS VLAK+ASGALE + RI+NL A++++ GF+ +GL + + L Sbjct: 173 ERNSPSLGGVLAKAASGALELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLPDLKL 232 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++AL+LGAEG GLR T+E +A L G +K+LNVSNAAAVALY Sbjct: 233 SPRVALVLGAEGAGLRRLTREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRR 286 >gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] Length = 247 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103 + ++ G + V AL R+I ++ + + + + V+ VP + ID+ Sbjct: 2 DQEYIAGKNPVLEALR-AGREINKIWIAEGSQKGAMKQVIELARERKVTVQFVPKKKIDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ A +++LD + DPHN+G+ILR+A A Sbjct: 61 VA--DGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + +A +AK+++GA+EHIP R++NL+ + + G G + Sbjct: 119 VGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLWIAGTDASG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + + L++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 179 TTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 331] Length = 270 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N RL VK + ++ + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + L L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas arsenicoxydans] gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Herminiimonas arsenicoxydans] Length = 247 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVG 106 ++G H V+A L + + + ++ + R+ V+ + + IVG Sbjct: 5 MIFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLSSIVG 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L L LDA+ LL+VLD + DPHN+GA LR A Sbjct: 65 TRR-HQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K L Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEKGLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + ALI+G+EG+G+R T+ET + + M G +++LNVS A+ V LY + Sbjct: 184 EADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQR 242 >gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] Length = 243 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEA 109 + G + V AL + R+I ++L +NA + +K V + +D + + Sbjct: 4 IEGRNPVMEALKS-ERRIDEILIYQNAEGVNELLKKAKAEGIKLKRVAKEKLDNLADSYS 62 Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P+ +LD + + L ++LD + DPHN G+ILR+A A G+ Sbjct: 63 -HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR S ++ + K+++GA+EHIP +++NL A++++ F G +++ Q Sbjct: 122 IIPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKENRFWIAGADMEAEGFCYQ 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EG G+R +E + L M G I +LN + A AV +Y Sbjct: 182 QDLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQRN 240 >gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB] gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica RCB] Length = 243 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L + + ++L +A AR V + +D + Sbjct: 5 LIYGFHAITAKLRHDPGAVKEILIDASRHDARARDLLGHAELQGINVVACDGKRLDGMA- 63 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L LD + L+VLD + DP N+GA LR A A Sbjct: 64 PGARHQGVVARIEGGRKVAHLDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V AK+A GA E +PY+ ++NL L+++ IG + +++ L Sbjct: 124 VIAPKDRAVGLTDVAAKTACGAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A +LGAEG+G+R T+E + + M G +++LNVS AA V L+ + Sbjct: 184 AAEWPKATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRRLG 243 >gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC2047] Length = 244 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++G+H V A L + ++ ++L + N R V V +++ Sbjct: 2 EIVFGIHAVQALLQRNAGRVERVLIQQDKFNGRVRELMQLANKKKVRVDQVDRDELEQHA 61 Query: 106 GKEAVHQGLALETA---PLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ L LD + L++VLD V D HN+GA LRSA A Sbjct: 62 --DGNHQGVVAICKNQKSLNEADLDQLLEEVSQPLVLVLDGVTDTHNLGACLRSADAAGV 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKK 218 ++ K S ++V++K ASGA E +P+++++NL ++ M G G + D S + Sbjct: 120 TAVVVPKDNSADLNSVVSKVASGAAETLPFVKVTNLARTMKAMQDRGLWITGTAVDESSR 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + +++G+EGKG+R TQE + ++ M G + +LNVS A V L+ Sbjct: 180 PLYEADLTGPRVIVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAVR 239 Query: 279 HFAK 282 K Sbjct: 240 QRVK 243 >gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 309 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 13/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR NH K+ QS ++ ++ L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131 RL + + VP +D++ G +HQG+AL+ P + D + Sbjct: 99 ERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGS 157 Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 LPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 278 VVSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] Length = 348 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 + + K L+L+G H V AAL NP RK LA LP Sbjct: 98 RPEPAARGKRPGGRGDGGLWLFGRHAVEAALQNPERK------ALRLLALAGAAEGLPKG 151 Query: 91 FP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHN 146 P V+ + I+ +V AVHQGLAL+ APL PT++ + ++ +LD V+DPHN Sbjct: 152 GPTVEPADREAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHN 211 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGA+LRSA AF ++ R+SP E+ LAKSASG LE +P +R NL+ AL G Sbjct: 212 IGAVLRSAAAFGIRAVVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHG 271 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F GL + ++ L + ++ ++LG+EG GLR ++ + L M +++LNVS Sbjct: 272 FWCAGLDASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVS 331 Query: 267 NAAAVALYIT 276 NAAAV Y Sbjct: 332 NAAAVTFYEL 341 >gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 10/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 15 IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-SD 73 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AVHQG+ P P L A + L++LD V DPHN+GA LRSA A Sbjct: 74 GAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHA 133 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A K A GA E +P IR++NL + + +G + ++ L Sbjct: 134 VIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGEADHTLY 193 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q ++AL+ GAEG+G R T+E + + G + +LNVS A + L+ + Sbjct: 194 QSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLFEAVRQRS 253 >gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] Length = 249 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 9/248 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + N +YGVH V +L N K++ + + P Sbjct: 2 KDNQLIEENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVSISWTP 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 +++ ++ AVHQG L A LD + ++ L+++LD + DPHN G+IL Sbjct: 62 KKSLSEMTD-GAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILILDGITDPHNFGSIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA++H+P R++NL+ L K+ G+ G Sbjct: 121 RTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQTLDKLKEKGYWIFG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D P + + K+ALI+G+EGKG+ ++ M + M G +++LN AAAV Sbjct: 181 TDMDG-TPSPKWNTSGKLALIIGSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAV 239 Query: 272 ALYITQNH 279 +Y + Sbjct: 240 LMYEVYRN 247 >gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] Length = 270 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 9/251 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKN 76 R R + + ++ R LYG H+V+ AL NP RKI +LLAT+N Sbjct: 4 RPRRPARPYHASQRQPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATEN 63 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL+ ++ +P + V P ID+++ +AVHQGL E PL + +L S LL+ Sbjct: 64 AAKRLEEES-IPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLL 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAI+RSA A I+TT R+SP+ + VLAKSASG LEH+P+ + NL Sbjct: 123 VLDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLA 182 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L+++ G Q +GL S+ L +AL+LGAEGKGLR T++T ++A + + Sbjct: 183 RTLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDL 242 Query: 257 PGIIKALNVSN 267 PG I +LNVSN Sbjct: 243 PGAIVSLNVSN 253 >gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 16/246 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104 + ++YG H V A L R I L T R L V+ V +D++ Sbjct: 2 SDWVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVAVERVSGAALDEV 61 Query: 105 VGKEAVHQGLALETAP-LLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+A++ + +D ++S LL++LD V DPHN+GA LR+A Sbjct: 62 AA--GRHQGIAVQVKSGATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACLRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ + + S V K A GA + +P++R++NL L ++ + G IG S Sbjct: 120 AAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIGTSDK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L ++ + +A+++GAEG G+R T+E + L M G + +LNVS A + L+ Sbjct: 180 ASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFE 239 Query: 276 --TQNH 279 Q H Sbjct: 240 AVRQRH 245 >gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] Length = 247 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E + G + V A+ + I ++ +K A + NL V T + K Sbjct: 2 EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ A +D + + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSQ-NHQGVVAVGAVYKYFEVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K E+ + +A+++G+EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] Length = 248 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] Length = 248 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R D + I K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLDRAREAGARLIEADSVRIAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A P+ L L+ + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + Q +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 KTIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEAL 244 Query: 278 NHFA 281 + Sbjct: 245 RQRS 248 >gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] Length = 285 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 13/286 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 + K F +++ K + ++ + + + + G L + R Sbjct: 2 TRDNKNFGKRNNQPNKQSFTKKPARQTVKPVEDRVEEQETDRDLVAGRLPAIEVLKS-ER 60 Query: 67 KIFQLLATKN-ALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLS 123 I ++ + + ++++ NL V+ VP +D++V HQG+ + + Sbjct: 61 DINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVD-GMNHQGVVVAASAFQY 119 Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 T+D + ++LD V DPHN+G+I+R+A A GII KR + +A + Sbjct: 120 ATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATV 179 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+++GA+EH+P R++NL A++++ G G + + Q I L++G E Sbjct: 180 AKASTGAIEHVPVARVTNLVQAIKELKERGLWLYGTDMEG-QDYRQWETTLPIGLVMGNE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKG+ +E M + M G +++LN S AA++ +Y K Sbjct: 239 GKGISRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGRNK 284 >gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 456 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 21/280 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIFQL 71 S + R R + + F +K R S + L+G H AAL R I ++ Sbjct: 122 SRSPRSDRQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALE-AGRPIHRI 180 Query: 72 LATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 T +L DA V+ V + ++ G AVHQG+AL+TA + L Sbjct: 181 WCTSEMRSAPRFMQLLRDAK-SSGVLVEEVTWARLAQMTG-GAVHQGIALQTAAADTLDL 238 Query: 127 D-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 A++ + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK Sbjct: 239 ADLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKV 298 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A+GALEH+P R+ NL +L+ + G++ +GL+ + + LE+ + ++ G+EG+G Sbjct: 299 AAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQG 358 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L T+ + + + G+ +LN S A A+ LY Sbjct: 359 LSMLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARR 398 >gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L N K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+ R++NL+ L K+ + GF T G + P Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMNG-TPS 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7] gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7] Length = 244 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 8/235 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +T+ AL + ++ + NA + P K V K +G Sbjct: 7 YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLG-NV 64 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E ++D + N+ LL++LD + DPHN+GAILR+ A DG+I Sbjct: 65 SHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + +AK ++GA++H+ +++NLT L+ + F +G D + Q Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ +++ L M G + +LN S A AV LY N Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYN 239 >gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +L+G++ V AL RK+ L RL+ VK + +DK+VG Sbjct: 4 YLFGLNAVFEALGQG-RKVVALYVEAQRNPRLEEIVAQATERHVAVKQCERRQLDKMVG- 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ + +L + ++ + ++LD + DPHN GA++RSA A C G+ Sbjct: 62 DVRHQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + ++ K+A+G L ++ +++NL A++++ G GL+ + + L + Sbjct: 122 IFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLFE 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 + IAL+ G+EG+G+RP ++ + + MPG +++LNVS A +AL+ +NH Sbjct: 182 APLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240 >gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] Length = 250 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100 ++ + G + V AL + R + ++ + D V+ VP + Sbjct: 2 TEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQG+ A L+ + + ++LD + DPHN+G+I+R+ Sbjct: 61 VDQLSS--ANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR S S +AV+AKS++GA+EH+P +R++NL + ++ G G Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKERGIWIAGTD 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ + Sbjct: 179 AKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238 Query: 274 YITQN 278 Y Sbjct: 239 YEVYR 243 >gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] Length = 245 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ + + + V VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAEKAGRRVHPVPMERLDGL-S 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A + + A GA + +PY+ ++NL ++ + G +G + + Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGVWLVGTDDQATDSMH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 185 KIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 247 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + KIF +++ + V+ VP + ID + Sbjct: 3 QDFIIGKNPVIEALKSERDINKIFIAEGSQSGQMQQVIGLAKSAGVLVQFVPKKKIDGMA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + A +D + + ++LD + DPHN+G+I+R+A A Sbjct: 63 --EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPHNLGSIMRTADAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + +A +AK+++GA+E+IP +R++N+ + ++ G G + K+ Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKERGVWIAGTDAKGKQ 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q + L++G+EGKG+ ++ + +L M G + +LN S AAA+ +Y Sbjct: 181 DFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240 >gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] Length = 285 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRSWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] Length = 249 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D ++TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+I+R+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG++ KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G +D+ Sbjct: 119 SGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] Length = 257 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 105/253 (41%), Positives = 149/253 (58%), Gaps = 7/253 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + T E ++L+G+H V AL N +R+ QL+ T NA A+L DA Sbjct: 5 KWVVRKEQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 + V P+ + + +VHQG ALE PL +L+ V +M+LD V DPHN+G Sbjct: 64 APEVVDPRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I T+ +S E+ LAKSASGALE PY+R+ NL D ++ + G+ Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYI 183 Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL +++ LEQ I ++ IAL+LGAEG GLR KT+ET S+ + G +LNV Sbjct: 184 VLGLDGEARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243 Query: 266 SNAAAVALYITQN 278 SNAAA+ALY T+ Sbjct: 244 SNAAAIALYATRR 256 >gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B] gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B] Length = 247 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] Length = 261 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG+H VS AL + R + K+ + R+ DA V+ +P +D+ Sbjct: 2 DVIYGIHPVSEALKSRGRSFQYVAIAKDRMDPRVQRIVEDAR-ESGITVRFLPRDFLDR- 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +HQG+ T+ LD + ++VLD + DPHN+GA++RSA Sbjct: 60 TANTNMHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKK 218 DG++ +R + + K+++GA E++P R++N+ +++ + + T+GL + Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ N +AL+LGAEGKGL ++ + + M G + +LNVS A + +Y Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239 Query: 279 HF 280 Sbjct: 240 QR 241 >gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] Length = 249 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D ++TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+I+R+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGI+ KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G +D+ Sbjct: 119 SGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 256 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 19/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S+K+ + +KK+ ++ + + G H V AL + I Sbjct: 2 KRIESVKNPQV-------KQWKKLLMKKERDK----TGLFLIEGFHLVEEALKSNI-SII 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL+ +N WD + PV V + I E QG+A L +D Sbjct: 50 QLIVKENKAIPATWDIS---GIPVAIVTEDVMKAISDTE-TPQGIAAVCEQFLYGDIDWT 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++++D V DP NIG ++R+A A D +I K + + + ++ G+L H+P Sbjct: 106 RAN--VLLIDAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPI 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 IR NL + ++K+ G S ++ + AL++G EG G+ + + T Sbjct: 164 IR-GNLREWIEKLQEQNVPIYGTSLENGEDYRCINPPRPFALLVGNEGSGVHKELLQMTT 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY + Sbjct: 223 KNLYIPIYGQAESLNVAVAAGILLYHLR 250 >gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] Length = 292 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 26/280 (9%) Query: 24 RRNHRDYKKMQSFNQKS-----------RHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 R + R KK + +KS T Q ++ +YG H+V AAL + R++ ++ Sbjct: 8 RSDRRSSKKPRFSGKKSVVISSPQPRANTQTEQSDDDLIYGRHSVLAALESD-RQLNRIW 66 Query: 73 ATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 T N L A+ + V Q + +I A HQG+A + AP LD Sbjct: 67 IT-NRLHYDPRFHNLIQASKAKGAVIDEVSVQRLSQIT-NGANHQGVAAQVAPYNYHDLD 124 Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++++ D ++DPHN+GAI+R+A A C G+I +R + ++ ++K A Sbjct: 125 GLIAQAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVA 184 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GALE P R+ NL+ AL+ + + GF G S+ K L+ I L++G+EG GL Sbjct: 185 AGALESFPVARVVNLSRALETLKAEGFWIYGTVSEGGKRLQDFNFRGAIGLVIGSEGSGL 244 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 TQ + + + G +LN S AAA+ LY Sbjct: 245 SLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQR 284 >gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] Length = 271 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 18/269 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +++N++ YK+++ N++ + Q + + G + + A+ + R+I ++L + Sbjct: 1 MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSG-REINKILFQEGI 59 Query: 78 LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132 + + + VP + +D HQG+ AP LD V N+ Sbjct: 60 EKGRLKSIFAIANEKKIICQEVPKRKLDN--STTERHQGVIAYVAPYSYFELDEVVNNLE 117 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR+SNLTDA++K+ GF G + + + + K+ +A+++G EG+G+ Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266 >gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] Length = 251 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%) Query: 48 NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+YG H L N K+F + A + V+ P +D+ Sbjct: 6 DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 +V HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 66 MV-NHENHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + + Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa SC2] gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa SC2] Length = 248 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103 E ++ G H+V+ AL + R I ++ NA L V V + +D+ Sbjct: 2 EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V HQG+ + AP ++ + L++LD + DPHN+G+ILR+A Sbjct: 61 MV-PGIQHQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSILRTADC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR S + + ++K+++GA+E++P R+SNL + ++ G +G + Sbjct: 120 TGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVGTDVTA 179 Query: 217 KKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239 Query: 276 TQN 278 Sbjct: 240 VLR 242 >gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] Length = 248 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + + AL + R I +L+ + K + ++ V +D+I Sbjct: 8 IEGRNPIIEALRSD-RPIDKLMISNTSKEGSIKKIIGMAKEKNVVIQYVDKHKLDEISTS 66 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + L+ + ++LD + DPHN+G I+R+A A Sbjct: 67 HS-HQGVIAVVSDYKYYELEDLLAIARERGEDPFFIILDEITDPHNLGTIIRTADAVGAH 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S ++V+AK+++GA+E++P +++N+ + ++++ G D Sbjct: 126 GVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTNIANTIKQLKKEGLWIAAADMDGGVFY 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EQ +AL++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 186 EQ-DLTGPLALVIGSEGFGVSRLVKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQR 244 Query: 281 AK 282 K Sbjct: 245 MK 246 >gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] Length = 253 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 15/252 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQ 99 +QPE F++G HT++A L + +KI L ++ R+ NL H P+ T+ Sbjct: 2 RNQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKV 61 Query: 100 TIDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 ++I AVHQG+ + L L N L+VLD V DPHN+G Sbjct: 62 QCNEIA-PNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A LRSA A D +I + + +++ ++ K+A+GA E ++NL L+++ G Sbjct: 121 ACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIW 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 GL + + +AL+LGAEGKGLR T+ + + M G + +LNVS A Sbjct: 181 CYGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVA 240 Query: 269 AAVALYITQNHF 280 A V L+ Sbjct: 241 AGVGLFEVVRQR 252 >gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] Length = 252 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 14/248 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDK 103 E+L++YG+H V +AL+N ++ ++L K AR+ + V+ V D+ Sbjct: 3 ESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFDR 62 Query: 104 IVGKEAV----HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + K+ + HQG+ T L LD + LL+VLD V DPHNIGA LR Sbjct: 63 TLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACLR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + A G+I K S + +A K ASGA + +P+ ++NL L+++ G G Sbjct: 123 TCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + Q IAL++GAEGKGLR T+E + H+ M G + +LNVS AA V Sbjct: 183 AGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGVC 242 Query: 273 LYITQNHF 280 L+ Sbjct: 243 LFEVVRQR 250 >gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76] gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4000] gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0017] gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0027] gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2141] gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4244] gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0012] gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0031] gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0043] gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0312] gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0645] gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1302] gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1341] gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1342] gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1346] gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0630] gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Enterococcus faecalis 62] gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1467] Length = 285 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G + IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWVAEGAAKGQIQIVVALAKENKILLQYAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR S +A +AK+++GA+E+IP +R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ + + HL M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] Length = 276 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 16/254 (6%) Query: 40 SRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKT 95 SR ++ E+ +YG +TV+ L + RK+F+++ T R P K Sbjct: 18 SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76 Query: 96 VPPQTIDKIV----GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 +P Q +++ HQG+ P L + +++LD + DP Sbjct: 77 LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILR+A A DGI+ K S ++ +AK ++GA+EHIP ++NLT A+ ++ Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + + + L++G+EGKG+ +E +L M G + +LN Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256 Query: 265 VSNAAAVALYITQN 278 S AAA+ +Y N Sbjct: 257 ASVAAALLMYEIYN 270 >gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] Length = 247 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E + G + V A+ + I ++ +K A + NL V T + K Sbjct: 2 EEQNVILGRNPVIEAIKSGKE-IEKIYISKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ A +D + + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSQ-NHQGVVAVGAVYKYFDVDNLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K E+ + +A+++G+EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 248 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103 E ++ G H+V+ AL + R I ++ NA L V V + +D+ Sbjct: 2 EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V HQG+ + AP ++ + L++LD + DPHN+G+ILR+A Sbjct: 61 MV-PGIQHQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSILRTADC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + + ++K+++GA+E++P R++NL + ++ G +G + Sbjct: 120 TGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVGTDVTA 179 Query: 217 KKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239 Query: 276 TQN 278 Sbjct: 240 VLR 242 >gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] Length = 245 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 115/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL R I ++L + + + D V+ P + +++ Sbjct: 4 YIVGRNAVKEALK-AGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNR-YE 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L ++ + LL++ D V DPHN+GAI+R+A Sbjct: 62 TDVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP +++ N+T ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 182 EADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240 >gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 251 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 47 ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 + F++G H L N + KI ++ + V+ VP +D Sbjct: 5 KGDFVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLD 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+V +A HQGL L + LD + + + L++LD + DPHN+G+ILRSA A Sbjct: 65 KLV-PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADA 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + Sbjct: 124 TGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEG 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 184 -QDYRYWDAKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQM 242 Query: 277 QN 278 N Sbjct: 243 LN 244 >gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42] Length = 248 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGTRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEAL 244 Query: 278 NHFA 281 A Sbjct: 245 RQRA 248 >gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 253 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + S I ++L R D A + + + G Sbjct: 11 VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L L+ LDA+ LL+VLD V DPHN+GA LR A A Sbjct: 71 THR-HQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHA 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + ++ AK ASGA E +PYI ++NL L+++ G IG + D+++ L Sbjct: 130 VIAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLY 189 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T+ET + H+ M G + +LNVS A+ + L+ Sbjct: 190 DIALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQR 248 >gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus GG] gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 260 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F++G H V AAL + I +L K+ + V T P Q +D Sbjct: 15 DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 74 LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 194 -QDYRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMYQA 252 >gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] Length = 246 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDK 103 ++ +YG+H V A L +I ++ K + D V+ + +++D+ Sbjct: 3 KSEIIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLDE 62 Query: 104 IVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+ L L+ + + L++LD V DPHN+GA LRSA A Sbjct: 63 KAQCEQ-HQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S S + V+ K A GA E + I+++NL ++ + G G + ++ Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IA+ +GAE KGLR T+E ++ L M G + +LNVS A + L+ Sbjct: 182 TGSVYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEV 241 Query: 277 QNHFA 281 + Sbjct: 242 VRQRS 246 >gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 280 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 146/258 (56%), Gaps = 3/258 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R R + + ++ ++ +L+G H V+AALNNP R +LL T+ L+ Sbjct: 8 RPVRRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENHPALEEA 67 Query: 85 ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHV 141 V + V Q +D ++G +AVHQG+AL L LD A+ ++VLD V Sbjct: 68 TRSGRGVRVAPELVQRQRLDDLLGPDAVHQGVALLARVLPPMPLDEALERPGPVLVLDQV 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP NIGAILRSA AF ++ R +P E+AVLAK+ASGALE +P +R NL+ A+++ Sbjct: 128 TDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNLSRAIEQ 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G T+GL + ++AL+LGAEGKGLR T+E+ +A L+MPG ++ Sbjct: 188 LQKSGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEME 247 Query: 262 ALNVSNAAAVALYITQNH 279 +LNVS AAAV LY Sbjct: 248 SLNVSVAAAVGLYELVRR 265 >gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] Length = 234 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 1/232 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+AAL NP R I +LL T+NA RL + N+ + V P TID+ +G +A Sbjct: 1 MLYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDA 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E PL SP + + +++VLD + DPHN+GAI+RSA AFS I+TT R+S Sbjct: 60 VHQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHS 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P + VLAKSASGALE +P +++ NL AL ++ G+ T+GL S + L + Sbjct: 120 PEATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPL 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL+LGAEGKGLR T++T + +A L MPG IK+LNVSNAA +ALYI + Sbjct: 180 ALVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALYIGASRLG 231 >gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13] Length = 249 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 13/249 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQ 99 T + + + G + V AL + + T +L R+ A VK V Q Sbjct: 2 QTQEKDEALIIGRNPVLEALK-AEEPLDTIYMNGTGGSLGRICTMAK-SRGIVVKNVTEQ 59 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 + ++ A HQG+ A TL+ + + L+V D + DPHN+GAI+R Sbjct: 60 KLSQMA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A DG+I KR S S +A + K+++GA +P R++NL AL + G G Sbjct: 119 TAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANLAAALDTLKEAGVWIYGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ +AL++G+EG G+ +E + L M G I +LN S AA + Sbjct: 179 DASGDA-YDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIF 237 Query: 273 LYITQNHFA 281 +Y T A Sbjct: 238 MYETLRQRA 246 >gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium erythraeum IMS101] Length = 288 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 132/282 (46%), Gaps = 19/282 (6%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSAALNNPSRKI 68 S K+ + + ++ K++Q + +S+ + + +YG HTV AAL + R + Sbjct: 2 STKNYKFNSQEKPQKN-KQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKS-ERYL 59 Query: 69 FQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++ + + + + V + +D+I + HQG+ + P Sbjct: 60 NRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQIT-RRKHHQGIVAQICPYEYK 118 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L + + +L+V D +NDPHN+GAI+R+ A G++ +R + ++ + Sbjct: 119 ELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVT 178 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K A+GALE+ P R+ NL AL+++ GF G + +P+ I L++G+EG Sbjct: 179 KVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEG 238 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +GL Q+ ++ + M G +LNVS A +A+Y Sbjct: 239 EGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQ 280 >gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] Length = 304 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 152/256 (59%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWD 84 + + S + + FL+G H V AAL NP+RK + +LLAT++ A ++ + Sbjct: 47 PNPPARAFSSAAPRPSRGKVDADGFLWGRHPVLAALANPARKGMGRLLATEDRAAEIERE 106 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVN 142 + ++ + QT+++++ AVHQG+A + PL +L+ + + ++++LD + Sbjct: 107 -GTANGHKIEVMDAQTLERMLPAGAVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLT 165 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI RSA+AF GI+ R+SP + LAK+A+GA E +P R++NL+ AL+++ Sbjct: 166 DPQNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGATERLPCARVTNLSRALERL 225 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G++ +GL DS++ LE + + L++G+EG G+R E +A + MPG ++ Sbjct: 226 ADLGWRAVGLDGDSEELLENALDHRPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFES 285 Query: 263 LNVSNAAAVALYITQN 278 LNVSNAAAVALY Sbjct: 286 LNVSNAAAVALYEATR 301 >gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] Length = 338 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 14/268 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78 R + K + E LYG +V AAL N SR + ++ T+ Sbjct: 66 SRAPKTIKTRMAPEAAPTVVESDEAELLYGKQSVLAALQN-SRPLNRVWLTEKLRYDPRF 124 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS 132 RL DA + V P+ +D++ HQG+A + A + + R Sbjct: 125 LRL-LDAAKAGGAVIDIVEPRRLDQLTA-GGNHQGVAAQAAAHPYVEFEELIASLVERPD 182 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ D + DPHN+GA++RSA AF GII +R + +A +AK A+GA+EH+P R+ Sbjct: 183 PVLLAADGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARV 242 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL A++++ G+Q +G + + L + + + +++G+EGKG+ TQ M Sbjct: 243 TNLNQAIERLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMV 302 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LN S A + LY Sbjct: 303 SIPLAGKTTSLNASVAGGIMLYEVMRQR 330 >gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus TPSY] Length = 248 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGARLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEAL 244 Query: 278 NHFA 281 A Sbjct: 245 RQRA 248 >gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] Length = 250 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100 ++ + G + V AL + R + ++ + D V+ VP + Sbjct: 2 AEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQG+ A L+ + + ++LD + DPHN+G+I+R+ Sbjct: 61 VDQLSS--ANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPHNLGSIMRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ G G Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKERGIWIAGTD 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ + Sbjct: 179 AKGSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238 Query: 274 YITQN 278 Y Sbjct: 239 YEVYR 243 >gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC 73102] Length = 363 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 20/256 (7%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------PF 91 S + +N +YG H V +AL R + ++ T RL +D + H Sbjct: 98 STQPIEEDNDIIYGRHPVLSALQK-QRNLNRIWIT----TRLRYDPSFHHFLLQAKENGT 152 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPH 145 + V P+ +D + A HQG+A +TAP L + +++V D + DPH Sbjct: 153 VIDEVEPKRLDYLT-NGANHQGVAAQTAPYGYIELADLIEQSKSVTDPVIVVADGITDPH 211 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R+A A G++ +R + ++ + K A+GALE+ R+ NL+ AL+++ Sbjct: 212 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFTVSRVVNLSRALEELKEA 271 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G ++ +P+ I L++G+EG+GL TQ + + + + G +LN Sbjct: 272 GFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTPSLNA 331 Query: 266 SNAAAVALYITQNHFA 281 S AA +ALY + Sbjct: 332 SVAAGMALYEIYRQRS 347 >gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2137] Length = 285 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G + IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493] gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493] Length = 270 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N RL VK + ++ + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + L L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] Length = 241 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 8/235 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +T+ AL + ++ + NA + P K V K +G Sbjct: 4 YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLG-NV 61 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E ++D + N+ LL++LD + DPHN+GAILR+ A DG+I Sbjct: 62 SHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + +AK ++GA++H+ +++NLT L+ + F +G D + Q Sbjct: 122 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ +++ L M G I +LN S A AV LY N Sbjct: 182 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYN 236 >gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR NH K+ QS ++ E + G + V L P+ ++ L T Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100 Query: 79 ARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131 + A + VP +D++ +HQG+AL+ P D + Sbjct: 101 RVTESVARAADSGISILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLATALGSP 159 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 160 PPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 219 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + ++ D + +++G+EGKGL ++ + Sbjct: 220 ATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLVRQNCDEV 279 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 280 VSIPMAGQAESLNASVAAGVVLAEIARQR 308 >gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] Length = 292 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 15/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFPV 93 S Q E+ +YG H+V AAL + R++ ++ T N L A+ + Sbjct: 35 SSPEPQQSEDDLIYGRHSVLAALESD-RQLNRIWIT-NRLHYDPRFHNLIQASKAKGAVI 92 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 V Q + +I A HQG+A + AP LD + + ++++ D + DPHN Sbjct: 93 DEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDEPVIVIADGIADPHN 151 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A A C G+I +R + ++ ++K ++GALE P R+ NL+ AL+ + + G Sbjct: 152 LGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFPVARVVNLSRALETLKAEG 211 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G ++ K L+ I L++G+EG GL TQ + + + G +LN S Sbjct: 212 FWIYGTVAEGGKRLQDFDFRGAIGLVIGSEGSGLSLLTQRCCDELISIPLEGKTPSLNAS 271 Query: 267 NAAAVALYITQNHF 280 AAA+ LY Sbjct: 272 VAAAINLYEIYRQR 285 >gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1] gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14] Length = 242 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 9/240 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V +L N K++ + + P +T+ + Sbjct: 2 EQNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L + ++ L+++LD + DPHN G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G + Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] Length = 313 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 22/273 (8%) Query: 24 RRNHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 RRN + + ++ SQ E +YG H V AL +R+I ++ +++L Sbjct: 27 RRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALE-GTRQINRIWV----ISKLR 81 Query: 83 WDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131 +D+ + + V P + ++ A HQG+ + +P L + Sbjct: 82 YDSRFHSLLTQAKANGTVIDEVSPHRLTQLTD-GANHQGIVAQVSPYTYVELGDLIEQAR 140 Query: 132 ----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + ++++ D + DPHN+GAI+R+ A G++ +R + ++ + K A+GALEH+ Sbjct: 141 ASTPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHL 200 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R+ NL+ AL+++ GF G S K L + + L++G+EG+GL TQ Sbjct: 201 PVARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRC 260 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + G +LN S AAA+ALY Sbjct: 261 CDALISIPLAGKTPSLNASVAAAIALYEVYRQR 293 >gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] Length = 249 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E+ + G H V A+ + I ++L + + V+TVP +D Sbjct: 2 EDTVIVGRHAVKEAIVSGH-AINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDF 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+ILR+A A Sbjct: 61 LS--NAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G + + Sbjct: 119 TGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKENGFWVAGTEASN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 FR 240 >gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341] gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341] Length = 271 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 18/269 (6%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKNA 77 +++N++ YK+++ N++ + Q + + G + + A+ + R+I ++L + Sbjct: 1 MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSG-REINKILFQEGI 59 Query: 78 LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132 + + + VP + +D HQG+ AP LD V N+ Sbjct: 60 EKGRLKSIFAIANEKKIICQEVPKRKLDN--STTERHQGVIAYVAPYSYFELDEVVNNLE 117 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR+SNLTDA++K+ GF G + + + + K+ +A+++G EG+G+ Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + HL M G I++LN S AA + +Y Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266 >gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] Length = 245 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 125/244 (51%), Gaps = 9/244 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKI 104 ++ +YG+++V AL R +A+ ++ RL+ +L PV+ + I ++ Sbjct: 2 KDEIIYGLNSVMEALRGKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISRL 61 Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+AL T L + R++ LL+VLD V DPHN+GA++RSA Sbjct: 62 CGTD-HHQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + +A + K+++GA+E I ++N+ L ++ + GF G +S Sbjct: 121 AQGVIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESPI 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ +AL++G+EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 181 SIFEQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVVR 240 Query: 279 HFAK 282 K Sbjct: 241 QRDK 244 >gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905] gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905] Length = 250 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100 ++ + G + V AL + R + ++ + D V+ VP + Sbjct: 2 TEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQG+ A L+ + + ++LD + DPHN+G+I+R+ Sbjct: 61 VDQLSS--ANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ G G Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKERGVWIAGTD 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ + Sbjct: 179 AKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238 Query: 274 YITQN 278 Y Sbjct: 239 YEVYR 243 >gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus Lc 705] Length = 260 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F++G H V AAL + I +L K+ + V T P Q +D Sbjct: 15 DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 74 LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 194 -QDYRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252 >gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] Length = 272 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 113/262 (43%), Positives = 158/262 (60%), Gaps = 1/262 (0%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + ++R + + R+ + LYG HTV+ AL NP RKI +L T+NAL Sbjct: 8 SRFKGSNRTPPRGRGGPPHRRNREDRDGPAILYGWHTVTLALANPKRKIRKLFVTENALR 67 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 RL + + V P ID+ +G +AVHQGL E PL + + + +++VLD Sbjct: 68 RLQDENIDLKKLTPEVVRPSVIDQRLGPDAVHQGLLAEADPLPALDISELPQDGIVLVLD 127 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAILRSA AF+ ++TT R+SP + VLAKSASGALE +P + + NL AL Sbjct: 128 QITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPVVIVQNLARAL 187 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +M GF T+GL S+ L + +AL+LGAEGKGLR T+ET ++A L MPG Sbjct: 188 TEMKEHGFLTVGLDSEGSTNLAETELRAPLALVLGAEGKGLRQLTRETCGTVARLDMPGE 247 Query: 260 IKALNVSNAAAVALYITQNHFA 281 IK+LNVSNA A+ALYI + Sbjct: 248 IKSLNVSNATALALYIGASRLG 269 >gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella violacea DSS12] gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella violacea DSS12] Length = 251 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + +G+H V A L + ++ +L + ++ + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKHSPERVIELWVLLGRDDKRLMPILESAAEYGVSVQYAARKVLD 61 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151 G HQG+ + L+ LD + + L++LD V DPHN+GA L Sbjct: 62 DKSG-GGQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I + S + ++K A GA E +P +++NL ++ + G +G Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++ L + +A+ +GAE KGLR T+E S+ + M G + +LNVS A+ V Sbjct: 181 AAGEAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGV 240 Query: 272 ALYITQNHF 280 L+ Sbjct: 241 CLFEAVRQR 249 >gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 254 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 11/249 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVK 94 +K + +YGVH L N I +L +K A+ + V+ Sbjct: 2 RKLKVGRPVSEEIVYGVHASMETLENNQ-TINKLYLSKSLAKNRAQQFRQTAEQNKIVVQ 60 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGA 149 V Q +D++ HQG+AL A LD + N L++LD + DPHN+G+ Sbjct: 61 EVDNQRLDELT-NHGNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A DGII KR + + V+AK+++GA+EH+P R+ N+ + + K+ F Sbjct: 120 ILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWI 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + +A+++G EGKG+ +T++ M + M G +++LN S AA Sbjct: 180 FGTDMKGA-DYTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAA 238 Query: 270 AVALYITQN 278 A+ +Y N Sbjct: 239 ALLIYQGFN 247 >gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] Length = 288 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 16/289 (5%) Query: 7 KKSEKIFSLKDSHYAK---LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + K F ++ K ++ R +K + + + + + G L + Sbjct: 2 TRDNKNFDKRNRQPKKPNFSKKTDRTERKFVKPIEDTVEEQETDRDLVAGRLPAIEVLKS 61 Query: 64 PSRKIFQLLATKN-ALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAP 120 R I ++ + + ++++ NL V+ VP +D++V HQG+ + + Sbjct: 62 -ERDINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVD-GMNHQGVVVAASA 119 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 T+D + ++LD V DPHN+G+I+R+A A GII KR + + Sbjct: 120 FQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLT 179 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 A +AK+++GA+EH+ R++NL A++++ G G + + Q I L++ Sbjct: 180 ATVAKASTGAIEHVAVARVTNLVQAIKELKERGLWLYGTDMEG-QDYRQWETTLPIGLVM 238 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EGKG+ +E M + M G +++LN S AA++ +Y K Sbjct: 239 GNEGKGISRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGRNK 287 >gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] Length = 275 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%) Query: 48 NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+YG H L N K+F + A + V+ P +D+ Sbjct: 6 DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 +V HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 66 MV-NHENHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + + Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] Length = 243 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I ++L +++ + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSG-RSIQRILVSEDRVKTGLADIVDLAKSQGIEVRPTPVKQMNK-YD 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L + LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP ++I N+T ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC 51908] Length = 245 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102 + +G+H V A L + ++ ++ RL + + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLASLLQMAAEYGISVQKAARKVLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ + +L + ++LD V DPHN+GA LR+A A Sbjct: 62 DKSDSGQ-HQGVLARVKAVKQLNDNDLLSLVEKTETPFFLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQEKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +A+ +GAE KGLR T+E+ S+A + M G + +LNVS A + L+ Sbjct: 181 DSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus] Length = 249 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 126/243 (51%), Gaps = 15/243 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID 102 E + + G H V A+ + I ++L K + + AN V++VP ID Sbjct: 2 EEIVIVGRHAVKEAIVSGH-TINKILIQDTIKKGQINEILKKAN-SRKIIVQSVPKSKID 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAV 155 + ++ HQG+A AP DA Q +++LD + DPHN+G+ILR+A Sbjct: 60 GLS--DSPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I KR S + + +AK+++GA+EHIP +R++NL + ++ + G+ +G ++ Sbjct: 118 ASGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEAN 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++G+EG+G+ ++ ++ M G + +LN S AA++ +Y Sbjct: 178 NSTDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYE 237 Query: 276 TQN 278 Sbjct: 238 VFR 240 >gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 247 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 3/233 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 L G+H V AL + ++A RL +L PV+ P ++D++ G Sbjct: 3 LLSGIHPVVEALRAGNPLERIVIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLAGS 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A HQG+ A LD+V S++L+VLD V DPHN+GAI+R+A A +I +R Sbjct: 63 SA-HQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVPER 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + V+AK+A+GALEH+P +R++N+ AL+ + G GL + +Q Sbjct: 122 RAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDYAK 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K L+LG EGKGL + ++ + + M G I +LNVS AA V L+ + Sbjct: 182 KSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRR 234 >gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 262 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 9/258 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPF 91 + +F + + N L+G H V+ L + + ++ AR+ Sbjct: 6 LPAFRRALSQVNPVSNKVLFGFHAVTVRLKTAPQSVKEIHVDATRRDARMRQFVERAEAA 65 Query: 92 PVKTVPP--QTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDP 144 K V + + ++ G HQG+ PL L LDA + L++VLD V DP Sbjct: 66 GAKLVDSDGERLTQLAGSGR-HQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDP 124 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA LR A ++ K ++ +A +AK ASGA E +PY+ ++NL +L +M Sbjct: 125 HNLGACLRVADGAGACAVVAPKDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKE 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + IG S D+ K + +AL+LGAEG G+R T++T + + M G +++LN Sbjct: 185 RDIRVIGTSDDATKTIYDVDLRGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLN 244 Query: 265 VSNAAAVALYITQNHFAK 282 VS AA + LY ++ Sbjct: 245 VSVAAGICLYEALRQRSR 262 >gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44] gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44] Length = 256 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEEVKDTRTLDELLDDLEEEGVKAPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L+++ G IG S D+ Sbjct: 125 GVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L Q AL+LGAEG G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 185 KHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEAL 244 Query: 278 NHF 280 Sbjct: 245 RQR 247 >gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 268 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 16/263 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84 R+ KK Q+ ++ +H Q EN F+YG H AL +I ++ + + Sbjct: 4 RNNKK-QAGGKRQQHEPQGENQAEFVYGHHAAVEALK-GQTEINKVWLQTGLADKARNEL 61 Query: 85 --ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135 ++ P +D++ E HQG+ L A T+D + + Sbjct: 62 ASLAKKRGLVMQDAPKAKLDELTNGE-NHQGVVLSIAAYAYVTIDDLFAKAAEKDEAPFF 120 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DPHN+G+I+R+A A GII KR + ++V+AK+++GA+EH+P R++NL Sbjct: 121 LVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNL 180 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++++ G G + + ALI+G EGKG+ P +++ + Sbjct: 181 VQTVEQLKERGVWVFGTDMNG-NDYRRWDATGATALIIGNEGKGISPLLKKSVDETLTIP 239 Query: 256 MPGIIKALNVSNAAAVALYITQN 278 M G +++LN S AA++ +Y N Sbjct: 240 MIGHVQSLNASVAASLLIYQGYN 262 >gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 265 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 143/258 (55%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82 R + R KK + + + P + +++G H V AAL NP R +LLAT ++ Sbjct: 7 RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQI- 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDH 140 +A ++ I + + + AVHQG+AL APL L R +L++LD Sbjct: 66 -EARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQ 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAILRSA AF G+I R++P + LAK+A+GA+E P + NL+ AL Sbjct: 125 VTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALD 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G++T+GL+ ++ L + + + L+LG+EG+GLR E +A + MPG Sbjct: 185 ELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPGGF 244 Query: 261 KALNVSNAAAVALYITQN 278 ++LNVSNAAA+ALY Sbjct: 245 ESLNVSNAAAIALYEASR 262 >gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] Length = 241 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG +TV L R++ +++ + + ++ K+VG Sbjct: 3 EWIYGKNTVRELL-TGPRQVHEVMIQNQSKNDDIVKLCRKNNIKMRMTDKNGFIKLVG-N 60 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L+ + LL++LD + DPHN+GAI+R+ A DG+ Sbjct: 61 VNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGVDGV 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K+ S +A +AK ++GA++H+P +++NL+ L + GF +G D+ Sbjct: 121 IIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTDYRA 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + L++G+EG G+ +E L M G + +LN S A AV LY N Sbjct: 181 VDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYN 236 >gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] Length = 261 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L + +K+ + L + A P + V + +DK + Sbjct: 23 WIYGKNAVMQILKS-KKKVEKALVAEGAKFPEAETLLKNRRIPTQRVSRKELDK-CCMDT 80 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+AL + +++ + +++LD + DPHN+GA+LR+ A DG+I Sbjct: 81 HHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVI 140 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S S ++ +AK ++GA+E +P ++NLT L+++ G+ G + + Q Sbjct: 141 LRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYRQP 200 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++G+EGKG+ +E M L M G I +LN S A AV LY Sbjct: 201 AFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLY 251 >gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] Length = 262 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 98/250 (39%), Positives = 145/250 (58%), Gaps = 11/250 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++R S E ++L+G+H V AL NP R +L+ T+NA +L DA V+ Sbjct: 10 KEQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAASGMEVELS 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 P+ + E+VHQG ALE PL +L V L++LD V DPHN+GA Sbjct: 69 DPRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRVTDPHNVGA 128 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILRS+ F ++ +R+S E+ LAK+ASGALE PYIR+ NL DA+ ++ + G+ Sbjct: 129 ILRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDELRAMGYLL 188 Query: 210 IGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL + ++ +EQ I ++ +A+++GAEG GLR KT+E + + G +LNVS Sbjct: 189 LGLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVS 248 Query: 267 NAAAVALYIT 276 NAAAVALY Sbjct: 249 NAAAVALYAV 258 >gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETH 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A T+D + + L++LD+V DPHN+GAI+R+A G Sbjct: 65 A-HQGVIAQVAAYDYSTVDEILARAEEKGEAPFLIILDNVEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+ + P +++N+ ++++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRTIEELKEKGIWFVCADMGGET-MY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 + L++G EG+G+ +E A + M G I +LN S AA V Y + Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRL 242 Query: 281 AK 282 AK Sbjct: 243 AK 244 >gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 242 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ ALN + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 -TVYSKWNTKGKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] Length = 247 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ E + HL M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 315 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 12/247 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102 E+ L G ++V AL R I +L K R V +D Sbjct: 71 EESDKLEGRNSVMEALKAN-RTINKLFIAKGEKEGSIRQIIALARQKGIITTEVDKIILD 129 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ A +D + +++LD ++DPHN GAILR+A Sbjct: 130 GM-STTRSHQGVIAYVAVKDYVEVDDILAVAQENGEPPFIIILDEISDPHNFGAILRTAN 188 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++ +AK+++GA+E++P R++N++ ++ + +G S Sbjct: 189 AVGAHGVIIPKRRAIGLTSTVAKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDST 248 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K + IAL++G+EG+G+ +E + ++ M G I +LN S AAA+ +Y Sbjct: 249 GEKAFYESDLKGPIALVVGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYE 308 Query: 276 TQNHFAK 282 K Sbjct: 309 ILKQRGK 315 >gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519] gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii] Length = 242 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + R I L K + +K V +D++ + Sbjct: 3 ISGRNPVLEALKSN-RTIDCLYIKAGDKEGSIKKILSIAKEQKILIKEVDKTKLDELA-E 60 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L+ V ++LD + DPHN+GAI+RSA Sbjct: 61 GTQHQGVVALVTDYKYYELEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S S +A + K+A+GA ++ I+++NL ++K+ G L D + Sbjct: 121 GVIIPKRRSASVNATVEKTAAGAASYMKVIKVTNLVSTVEKLKKEGIWIYALDMDGE-SY 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G EGKG+ ++ + M G + +LN S AA++ LY Sbjct: 180 DTVDLKGSVALVVGNEGKGISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239 >gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 260 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F++G H V AAL + I +L K+ + V T P Q +D Sbjct: 15 DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 74 LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q A+++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 194 -QDYRQWDAKGSTAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252 >gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] Length = 285 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPAIAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G + IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8801] gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] Length = 292 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 13/256 (5%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPF 91 + S + N +YG H+V AAL + R++ ++ T +A A Sbjct: 32 VAKPSPQEEEEANDLIYGRHSVLAALESD-RQLNRIWITNKLHYDARFHTLIQAAKAKGS 90 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 + V Q ++++ HQG+A + AP L+ + N ++++ D + DP Sbjct: 91 VIDEVSIQRLNQLT-HGGNHQGVAAQVAPYAYHELETLIEQAKASSNEPVIVIADGIADP 149 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAI+R+A A G++ +R + ++ + K A+GALE P R+ NL+ AL+ + Sbjct: 150 QNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGALESFPVARVVNLSRALETLKE 209 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF G ++ K L I L++G+E GL T+ + + + G +LN Sbjct: 210 AGFWIYGTAATGGKSLHNMELRGPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLN 269 Query: 265 VSNAAAVALYITQNHF 280 S AAA+ LY Sbjct: 270 ASVAAAIVLYEVYRQR 285 >gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 14/290 (4%) Query: 5 SKKKSEKIFSLK--DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 SKK+ K K S AK K + N + + EN L G +++ AL Sbjct: 32 SKKRGGKPEERKGFKSEPAKRTTYAAPVKDTEFENIEKENAVPEENDKLEGRNSIMEALK 91 Query: 63 NPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 R I +L K R V +D + + HQG+ A Sbjct: 92 AN-RTINKLFIAKGEKEGSIRQIIAMARQKGIITTEVDKSILDGMSSTRS-HQGVIAYVA 149 Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 +D + +++LD ++DPHN GAILR+A A G+I KR + Sbjct: 150 VKDYVEVDDILAAAQEKGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGL 209 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 ++ ++K+++GA+E++P R++N++ ++ + +G S +K + +AL+ Sbjct: 210 TSTVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPMALV 269 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +G+EG+G+ +E + ++ M G I +LN S AAA+ +Y K Sbjct: 270 VGSEGEGMGKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQRGK 319 >gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis excentricus CB 48] gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis excentricus CB 48] Length = 322 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 26/301 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFL 51 N K S+ FS + YAK + R+ Y Q+ +++ +Q E+ ++ Sbjct: 17 NGPKKSGSKAAFSGQSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDGWI 76 Query: 52 YGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +G+H V AAL N SR +L T + L+ A V+ + + AV Sbjct: 77 WGLHAVEAALKNQSRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAV 136 Query: 111 HQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+AL PL L+ + + +L++LD V DP NIGAILR+ AF G+I Sbjct: 137 HQGVALNGPPLEGDDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIM 196 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R+SP VLAK+A+GA++ +P+ R++NL+ AL+ + GF ++G++ +++ L+ + Sbjct: 197 QDRHSPVMQGVLAKTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVL 256 Query: 225 ---------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +++G+EG+GLR E + + MPG ++LNVS+A ++ALY Sbjct: 257 EQQGWRQAGSPRALVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYE 316 Query: 276 T 276 Sbjct: 317 A 317 >gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 295 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 15/284 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NP 64 +K+ + S + + KK + +++ + + F+ G H L + Sbjct: 10 NQKNNEFNSRRTAKNTAKPTRRPANKKPAAPVEEA--AVEEQTDFVIGKHASLETLKTSD 67 Query: 65 SRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 ++KI ++ A D ++ VP +D ++ HQG+ L AP Sbjct: 68 AKKINKIFLQDGLKADFVHDVVKLAKEKRLIIQNVPKNKLD-LLSDRQNHQGIILAIAPF 126 Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 ++D + +++LD++ DPHN+G+I+R+A A GII K + ++ Sbjct: 127 EYASVDDIFAKAKAQEEEPFILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRAVGLTS 186 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +AK+++GA+EHIP R++NLT ++K+ G G + + I LI+G Sbjct: 187 TVAKTSTGAIEHIPVARVTNLTQEIKKLKDRGLWIFGTDM-AGTDYRKWDAKGPIGLIIG 245 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EGKGL P ++ + M G +++LN S AA V +Y N Sbjct: 246 NEGKGLSPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYN 289 >gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] Length = 370 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 S+ + +DS + R R + + KS + L+G H AAL Sbjct: 29 SRDGEARGSRSQDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALE-A 87 Query: 65 SRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 R I ++ T +L DA V+ V + ++ G AVHQG+AL+TA Sbjct: 88 GRPIHRIWCTSEMRSAPRFMQLLRDAK-ASGVLVEEVTWARLAQMTG-GAVHQGIALQTA 145 Query: 120 PLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 + L A++ + LL+ LD + DPHN+GAI+RSA A G++ +R S Sbjct: 146 AAETLDLSDLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGL 205 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + +AK A+GALEH+P R+ NL +L+ + G++ +GL+ + + LE+ + + ++ Sbjct: 206 TGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVV 265 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+E +GL T+ + + + GI +LN S A A+ LY Sbjct: 266 TGSEDQGLSMLTRRHCDHLIRIPLRGITPSLNASVATALCLYEVARR 312 >gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] Length = 320 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 26/290 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++++ +H KL R RD + RH + G + V L+ Sbjct: 37 TPKAEDRVYHA--AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHAR 85 Query: 64 -PSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P+ ++ T+N RL L H P+ VP +D + G +HQG+ L+ P Sbjct: 86 VPATALYIAQGTRN-DDRLTEAVQLAHSRSIPLIEVPRIELDSMTG-NGLHQGVGLQIPP 143 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + + +++VLD++ DP N+GA++RS AF G++ +R S S + Sbjct: 144 FEYADVFDLIGTVADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T L++ G+Q +GL + + + +++ Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVV 263 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 G+EGKGL +ET + + +++LN S AA V L + Q A Sbjct: 264 GSEGKGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQRRAA 313 >gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533] gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533] gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 251 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 13/238 (5%) Query: 48 NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+YG H L N K+F + A + V+ P +D+ Sbjct: 6 DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 +V HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 66 MV-NHENHQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTCDA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + + Sbjct: 125 TGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAMEG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 185 E-DYRKWNAKGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] Length = 250 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103 + LYG+++ AL R+ F+L +++A R++ L PV+ + I + Sbjct: 2 KEEILYGINSAMEALR-GKRRAFELFVSRDASDRRMEKLLKLATEKGVPVRNRDKRDISR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+AL+ L + L++ LD V DPHN+GA++RSA Sbjct: 61 LCGTD-HHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + +A + KSA+GA E IP +++NL AL ++ GF G + + Sbjct: 120 AGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + +++G+EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 180 ASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEV 239 Query: 277 QNHF 280 Sbjct: 240 LRQR 243 >gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] Length = 244 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V A+ N R I +LL + K + ++ V +D++ Sbjct: 3 IIEGRNPVIEAIKND-RHIEKLLISNSSKEGSIKKIIAMAKEKKIVIQYVDRHKLDEMST 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ + + ++ V +++LD + DPHN+G+I+R+A A Sbjct: 62 SHA-HQGVIATISDYIYKDIEEVVREVKEKGEDPFIIILDEITDPHNLGSIIRTADAVGA 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ KR S + V+AK+++GA+E++P +++N+ + ++ + G D Sbjct: 121 HAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTNIVNTIKMLKEEGLWIAAADMDGGV- 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + L++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 180 FYKQDLTGPLGLVVGSEGFGISRLVKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQ 239 Query: 280 F 280 Sbjct: 240 R 240 >gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus pseudintermedius ED99] Length = 249 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 ++ + G H V A+ + I ++L + + + V+TVP +D+ Sbjct: 2 DSEIIVGRHAVREAVISGH-TINKILIQEGIKKQQIEEILKVAKSSKLVVQTVPKSKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP L+ +++LD + DPHN+G+ILR+A A Sbjct: 61 LA--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII KR S S + +AK+++GA++H+P IR++NL+ + + G+ G + + Sbjct: 119 TGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + +A+++G+EG+G+ + +E + M G + +LN S AA++ +Y Sbjct: 179 ATDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 FR 240 >gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 249 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + + G + V AL P +K+ L + + V+ V + +D++ Sbjct: 2 SDIIAGRNAVREALRGTRPIQKVLVLESGHGGSFEEILSLCVKRHVAVERVNKERLDRL- 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ + + LD V L++LD + DP NIGA++RSA A Sbjct: 61 SPDVRHQGVVAVGSAVAFRDLDEVLEGVAQKGKVPFLLLLDELQDPQNIGALIRSANAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I +R S AV+AK ++GALEH P + ++NL ++ + GF +G D K Sbjct: 121 VDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVTNLVRTMKDLKKRGFWIVGADMDGKD 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++GAEGKG+ +E + + M G +++LN S A + LY Sbjct: 181 LYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVRIPMLGQVQSLNASVAGGILLYEITR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 10/242 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ ++ +YGVH V+ L N K++ + D + Sbjct: 2 KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG L + LD + ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 P + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 AL 273 + Sbjct: 239 LM 240 >gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 246 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ + + + V VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTLIEQAERAGRRVHPVPVERLDGLA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + L++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + ++ + + A GA + +PYI ++NL ++++ G +G + + Sbjct: 125 VIAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELKERGVWLVGTDDQASHDMH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 185 AIDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3] Length = 252 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 127/238 (53%), Positives = 166/238 (69%), Gaps = 14/238 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + ++ P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGK Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252 >gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus denitrificans BC] gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans BC] Length = 248 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 L+G H V L + I ++ AR+ V+ + + K+ G Sbjct: 6 ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ SA +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGISATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEAL 244 Query: 278 NHFA 281 Sbjct: 245 RQRG 248 >gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 242 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ ALN + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L + + +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + K+++GAL+H+P +R++NL+ L K+ S GF G D Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 -TVYNKWNTKGKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] Length = 239 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 49 LFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + +YG + V+ AL ++ ++A AR V+ P +D++ G Sbjct: 1 MLIYGRNPVTEALREGRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAGT 60 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ E L + A+ + LL++LD + DP N GAI+RSA Sbjct: 61 TA-HQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGAH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R S SAV+AK+A+GA ++P +++ NL ++++ G + ++ +PL Sbjct: 120 GVVVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQPL 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E+ + +AL++G+EG GLR +E + + + G +++LN S AA + +Y Sbjct: 180 ERTDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239 >gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3] gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis ST3] Length = 242 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V +L N K++ + + P +T+ + Sbjct: 2 EHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L + ++ L+++LD + DPHN G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G + Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNG-T 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans K601] Length = 248 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 L+G H V L + I ++ AR+ V+ + + K+ G Sbjct: 6 ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ SA +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGISATVAKVASGAAETMPYFMVTNLARTLGELKERNIWVIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEAL 244 Query: 278 NHFA 281 Sbjct: 245 RQRG 248 >gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 249 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 15/243 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID 102 E + + G H V A+ + I ++L K + + AN + V++VP ID Sbjct: 2 EEIVIVGRHAVKEAIVSGH-TINKILIQDTIKKGQINEILKLAN-SNKIIVQSVPKSKID 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + ++ HQG+A AP DA +++LD + DPHN+G+ILR+A Sbjct: 60 GLS--DSPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPHNLGSILRTAD 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I KR S + + +AK+++GA++HIP +R++NL + ++ + G+ +G ++ Sbjct: 118 ASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIVGTEAE 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + +++G+EG+G+ +E ++ M G + +LN S AA++ +Y Sbjct: 178 NSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYE 237 Query: 276 TQN 278 Sbjct: 238 VFR 240 >gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] Length = 291 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 21/262 (8%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------ 87 +S + S + ++ +YG H+V AAL R++ ++ T RL +D Sbjct: 29 RSQSNTSAEPQETDDDLIYGRHSVLAALE-GDRQLNRIWIT----NRLHYDPRFHNLIQG 83 Query: 88 --PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138 + V Q + +I A HQG+A + AP LD + ++ ++++ Sbjct: 84 SKAKGAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDAPVIVIA 142 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GAI+R+A A C G+I +R + ++ ++K A+GALE P R+ NL+ A Sbjct: 143 DGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRA 202 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ + GF G ++ K L I L++G+EG GL TQ + + + G Sbjct: 203 LETLKKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVSIPLEG 262 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +LN S AAA+ LY Sbjct: 263 KTPSLNASVAAAINLYEIYRQR 284 >gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei LC2W] gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei BD-II] Length = 259 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%) Query: 37 NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91 +K + T++ + + F++G H V AAL + I +L K+ + Sbjct: 2 AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V T P Q +D ++ + HQG+ L P TLD + ++LD++ DP Sbjct: 62 LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+ILR+A A G+I K + ++ +AK ++GA+E++P R++NL ++ + Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + D + + AL++G EGKG+ P + +M + M G +++LN Sbjct: 181 RSMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLN 239 Query: 265 VSNAAAVALYIT 276 S AA + +Y Sbjct: 240 ASVAAGILMYQA 251 >gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel] gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel] Length = 262 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 13/254 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97 R + E +++ G H +AL NP+R +LL T L + A + + V Sbjct: 2 GRTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVA 61 Query: 98 PQTIDKIVGKE-AVHQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146 + I KI G VHQG+AL L D +R + +++LD V D +N Sbjct: 62 AEEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINN 121 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA F D +I + +SPSE+ ++ + +SGA + +P +R+ NL ++ + G Sbjct: 122 VGAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNG 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G+ D K L + ++ A+ILG+EGKG+R T+E + + M I +LNVS Sbjct: 182 YWCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVS 241 Query: 267 NAAAVALYITQNHF 280 NAAA+ LY + Sbjct: 242 NAAAIVLYSSYLQL 255 >gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G H ++ A+ +I + R D H V V +D + Sbjct: 19 ILAGRHAITEAIKAGRGINRILIADGLHGSGVRELRDLARAHDITVDIVSRAKLDA-AAQ 77 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A H G+ AP+ ++ + LL++LD + DPHN+GA+LR+A A Sbjct: 78 GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G Sbjct: 138 GILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRALKEDGFWIAGADMAGSDTY 197 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG+G+ T+E L M G I +LN S A A+ +Y Sbjct: 198 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 257 >gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 298 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 114/266 (42%), Gaps = 12/266 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + + +++ + N + + + G + V L + R I + + + Sbjct: 27 KRQFVKENKNGGEYIRENVSNASELETREDLIIGRNAVMEVLKSD-RTIECVYISNGNME 85 Query: 80 ---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132 ++ + +K V + +D + HQG+ P + + N Sbjct: 86 GSIKVIINIAREKGLVLKEVDRKKLDAM-SNGTNHQGVIALVTPFKYCQIADMLNDAKEK 144 Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++VLD + DPHN+G+I+R+A GII KR + ++ + K + GA+EH+ Sbjct: 145 GEDPFIIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKI 204 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++N+ A+ ++ G G ++ Q N A+++G+EG+G+ T + Sbjct: 205 AKVTNINSAIDELKESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKLTLKKCD 264 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYI 275 + + M G I +LN S A + +Y Sbjct: 265 KLVKIPMVGKINSLNASVAGGIMMYE 290 >gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase Length = 250 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N RL VK + ++ + + Sbjct: 7 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66 Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + L L LL++LD V DPHN+GA LRSA AF Sbjct: 67 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 125 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 185 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 244 >gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] Length = 247 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7425] Length = 387 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 12/252 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95 ++ ++ ++ +YG HT+ AAL + R++ ++ + + Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVNQLRYDPRFHSLLLQAKAAGVVIDE 176 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGA 149 V +D+I A HQG+A + AP LD + + +L+ D + DPHN+GA Sbjct: 177 VDYLRLDQITA-HAKHQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHNLGA 235 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G++ +R + ++ +AK A+GALEH R+ NL AL+++ + GF Sbjct: 236 IIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAGFWI 295 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G+++ + KP+ + + L++GAEG GL Q + + + G +LN S A Sbjct: 296 YGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNASVAT 355 Query: 270 AVALYITQNHFA 281 +ALY + Sbjct: 356 GMALYEIFRQRS 367 >gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] Length = 285 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G + IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGM-DYRRWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L] gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus Q1] gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CNEVA-9066] gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A1055] gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Western North America USA6153] gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Kruger B] gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Vollum] gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Australia 94] gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI] gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Ames] gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC 10987] gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. 'Ames Ancestor'] gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Sterne] gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family [Bacillus cereus E33L] gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus Q1] gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus biovar anthracis str. CI] gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 247 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] Length = 248 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKEQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] Length = 257 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105 + +G+H V L + + +L K + PV +P +D++V Sbjct: 4 DYAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDELV 63 Query: 106 GKEAVHQGLALETAP----------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153 HQG+ E + AV + L++VLD V DPHN+GA LRS Sbjct: 64 P--GRHQGVVAELGDNTAGQSDLRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLRS 121 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A ++ K + +AV+ K A GA E +P +R++NL +L + + G G + Sbjct: 122 ADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGTA 181 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + L +AL++GAEG G+R T+E + +L M G + +LNVS A V L Sbjct: 182 GEASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCL 241 Query: 274 YITQNHF 280 + + Sbjct: 242 FEIRRQR 248 >gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] Length = 248 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 ++G H V + + + +++ T AR+ V+ V + K+ G Sbjct: 6 VIFGFHAVGVRIKTAPKSVLEVMFDTSRRDARMKQFIARAQEAGVRLVEADGLRLAKLSG 65 Query: 107 KEAVHQGLALETAPLLS--------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ P+ L+ LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVVARVEPIAQVRSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ +G S D+ Sbjct: 125 AHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERSIWCVGTSDDAPG 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 TLYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMR 244 Query: 279 HFA 281 + Sbjct: 245 QRS 247 >gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] Length = 256 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + I K+VG Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRIAKLVG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEEVKDTRTLDELLDDLEDEGVKAPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L+++ G IG S D+ Sbjct: 125 GVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDAD 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L Q AL+LGAEG G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 185 RHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEAL 244 Query: 278 NHF 280 Sbjct: 245 RQR 247 >gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] Length = 250 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G + V AL + R ++L + + + PV+ V + +D++ Sbjct: 2 EEFIVGRNAVREALRS-RRPFNKVLVQEGSHGGSLSEILELAQEQKIPVEKVSREVLDRL 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + AP+ LD V LL++LD + DP N+GA++R+A A Sbjct: 61 AD-GVRHQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQDPQNVGALIRTANAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ +R S +AV+AK ++GA+E++P I+I N+ ++++ GF G D + Sbjct: 120 GVHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLKKRGFWIAGADMDGE 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L++GAEGKGL +E + + M G + +LN S A + LY Sbjct: 180 DQYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIV 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] Length = 256 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102 +N ++G+H+V AA+ + ++ + A + + PV V + +D Sbjct: 2 TQNRIIHGLHSVRAAVRYDPTHVVEVWLDRQARSGRWQALRRQLEALACPVHLVDRRQLD 61 Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAV 155 ++ + VHQG+A+ A P L+A+ + LL+VLD V DPHN+GA LR+A Sbjct: 62 RLTSGQ-VHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 +IT + + + + K+A+GA++HIP +++NL L+K+ G IG + Sbjct: 121 GAGVQAVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQ 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L + + + L++GAE GLR T+ + + M G I +LNVS A V LY Sbjct: 181 ADVTLYEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYE 240 Query: 276 TQNHF 280 Sbjct: 241 VVRQR 245 >gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] Length = 290 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 43 KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVI 101 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG ALE PL LD +++LD V DPHN+GAILRS Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281 Query: 271 VALYIT 276 +ALY + Sbjct: 282 IALYAS 287 >gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309B] gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309A] Length = 282 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 11/279 (3%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-R 66 K+EK K +R+ + + +N F++G H AL Sbjct: 2 KNEKSRPFKKGKKRSDKRSKERNPRPATAGADGTSEELADN-FVFGFHATVEALQQGRGN 60 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 K+F + A PVK VP +D + VHQG+ L TL Sbjct: 61 KLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYLTL 119 Query: 127 DAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + + ++LD + DPHN G+ILR+A A DGII K + + + K+ Sbjct: 120 EELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKA 179 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++GA+EHIP R++NL ++ + F G + IALI+G EG+G Sbjct: 180 STGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEGRG 238 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + + M G +++LN AA + +Y Sbjct: 239 MSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 277 >gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] Length = 243 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I ++L +++ + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSG-RSIQRILVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L + LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] Length = 285 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 116/281 (41%), Gaps = 12/281 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E + F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++ L ++ + F G + IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280 >gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654] Length = 267 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 9/250 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +KS+ + E ++L+G+H V AL NP R +L+ TKNA +L DA + Sbjct: 11 KEKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLA-DAIATGGIEPEVA 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + +VHQG ALE PL L+ V ++++LD V DPHN+GAIL Sbjct: 70 DPRKFPVPLDPGSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I TK +S E+ LAK+ASGALE PY+R++NL DA+ + G+ +G Sbjct: 130 RSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLKDMGYTVLG 189 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ ++ + + +AL++GAEG GLR KT+ET ++ + +LNVSNA Sbjct: 190 LAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNA 249 Query: 269 AAVALYITQN 278 AAV+LY Sbjct: 250 AAVSLYAVTR 259 >gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] Length = 282 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 13/277 (4%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 K + K R + + + F+ R + E F+ G ++V +L ++ ++ Sbjct: 11 KERKCDPHEKRRSGDQSIRGERGFSSGGR-RKEEETCFIGGRNSVLESLRAG--QVKKVF 67 Query: 73 A-TKNALARLDWDANLPHPFPVKTVPPQT--IDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + RL A V + + +D++ + HQG+A P L+ V Sbjct: 68 IKSGKKDGRLLALAEEAERLGVAAIETEERTLDRLT-EGVRHQGVAASLKPYAYADLEEV 126 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R LL++LD V D NIGAI+R+A ++ K S +A K+ASGA Sbjct: 127 LSSCERKDPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAF 186 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 ++P +I N+ L+K+ GF +G D L Q + +++GAEGKG+ P T Sbjct: 187 AYLPVCQIGNIRQTLEKLKERGFWAVGADMDGGD-LYQADLKGPLVIVMGAEGKGISPLT 245 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G + +LNVS AAA+ +Y Sbjct: 246 KRMCDFCVRIPMRGKVSSLNVSVAAALLMYEAVRQRN 282 >gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum STM815] Length = 247 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKI--VG 106 LYG H V+A L + + ++ + R++ + V+ + ++ + Sbjct: 6 VLYGFHAVTARLRHDPSSVEEIYYDQTRRDRRMNEFLAVAKEAGVRLIAADE-TRLWGLA 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A L+ LD ++ LL+VLD + DPHN+GA LR A A Sbjct: 65 HTERHQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ A Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] Length = 290 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 43 KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVI 101 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG ALE PL LD +++LD V DPHN+GAILRS Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281 Query: 271 VALYIT 276 +ALY + Sbjct: 282 IALYAS 287 >gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] Length = 241 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V A L +K+++++ + + P K + +D + + Sbjct: 4 YVYGKNVVKALL-ADKKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFS-GS 61 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + + T++ + + L ++LD + DPHN+GAILR+ DG+I Sbjct: 62 NHQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +AK ++GA++ + ++NL L+ + GF G D+ + Q Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + L++G+EG G+ P ++ L M G + +LN S A AV LY Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQRN 239 >gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 248 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E+ + G H V A+ I ++L + + + V+TVP +D Sbjct: 2 EDHIIVGRHAVKEAIVTGH-TINKILIQEGIKKQQIKEILTNAKTQKLVVQTVPKSKLDH 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + +A HQG+A AP + + +++LD + DPHN+G+ILR+A A Sbjct: 61 MS--DAPHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII KR S + + ++AK+++GA++HIP +R++NL+ + + + GF +G +D+ Sbjct: 119 TGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAHGFWIVGTEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA + +Y Sbjct: 179 ATDYRDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] Length = 251 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97 T++ + F+ G H AAL + I ++ K +A+A+L A H + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +D++ + HQG+AL A T+D + ++LD + DPHN+G+I Sbjct: 60 KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + +AL++G EGKG+ P ++T M + M G +++LN S AA+ Sbjct: 179 GTDMQG-TDYRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237 Query: 271 VALY 274 + +Y Sbjct: 238 LLIY 241 >gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] Length = 265 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 11/248 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ 99 H+ P L G H ++ A+ R I ++L R D H V V Sbjct: 11 HSVDPPAGILAGRHAITEAIK-AGRGINRILIADGMHGGVRELRDLARAHDITVDIVSRA 69 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D + A H G+ AP+ ++ + LL++LD + DPHN+GA+LR Sbjct: 70 KLDA-AAEGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLR 128 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G Sbjct: 129 TADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEDGFWIAGA 188 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + L++G+EG+G+ T+E L M G I +LN S A A+ Sbjct: 189 DMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAIL 248 Query: 273 LYITQNHF 280 +Y Sbjct: 249 MYEAMRQR 256 >gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116] Length = 247 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGLHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans ATCC 17616] gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] Length = 247 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY + Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRR 244 Query: 281 AK 282 AK Sbjct: 245 AK 246 >gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 242 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ ALN + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + ++ K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 119 TGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 -TVYSKWNTKGKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 240 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L +KI+++L + H K +P + +D ++ + Sbjct: 4 YVYGKNVVKQLLQ-EDKKIYEILMAEGMRDTALEKLIKEHKITCKILPRKKMDGML--QG 60 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + + L + S L ++LD + DPHN+GAILR+ DG+I Sbjct: 61 NHQGIAAKIDDYKTYELLELLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVI 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +AK ++GA++ + ++NL +++ + GF +G ++ + + Sbjct: 121 IGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSRDYREG 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G+EG G+ ++ L M G++ +LN S A + LY N Sbjct: 181 QYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237 >gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] Length = 250 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ G ++V AL RKI ++ + AL + A H V+ + +D++V Sbjct: 6 WITGRNSVLEALR-AGRKIEKIYIASSPHGAALQEIMSLAKAAH-IVVEERDRKALDRLV 63 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+A + P+ + + ++LD + D HN+GAI+R+A Sbjct: 64 -PQQRHQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAIIRTAECAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ KR+S + + K+++GA+E++P + I N T L+ + GF IG + + Sbjct: 123 AHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIGADMNGEA 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++G EGKG+ +E + + M G + +LN S AAA+ +Y T Sbjct: 183 DYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYETVR 242 Query: 279 HFA 281 Sbjct: 243 QRG 245 >gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] Length = 652 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98 ++ P + ++G H AAL + R I ++ T + + L V+ V Sbjct: 284 STPPADDLIWGRHASQAALESG-RPIHRIWCTPEMRSAPKFLQLLREAKTSGVLVEEVTW 342 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + ++ G +VHQG+AL+TA + L A+ LL+ LD + DPHN+GA++ Sbjct: 343 ARLAQVTG-GSVHQGIALQTAAADTLDLSALIEGCSELGEPPLLLALDGITDPHNLGAVV 401 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A G++ +R S + AK A+GA+EH+P R+ NL +L+K+ G++ IG Sbjct: 402 RSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIG 461 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+++ L + L+ G+E +GL T+ + + + GI +LN S A A+ Sbjct: 462 LAAEGDVTLMDVDLEGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATAL 521 Query: 272 ALYITQNH 279 +Y Sbjct: 522 CVYEVARR 529 >gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] Length = 234 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 9/226 (3%) Query: 63 NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I +L + +A R + V V +D I K A HQG+A Sbjct: 3 QNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SKGARHQGVAGFID 61 Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 62 ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++K A GA E +PYI ++NL L+++ +G IG + L D+ A ++G Sbjct: 122 TVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPDRAAWVMG 181 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] Length = 248 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102 +N ++ GV+ V++A+ N + + ++L +A RL V+ V Q +D Sbjct: 3 KQNQWVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQARRYGIEVRKVATQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 I G HQG+A A L+ ++A LL+VLD V DPHN+GA LRSA+ Sbjct: 63 GI-GGNVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSAL 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ + S +A + K+++GA + +P ++++NL L+++ G GL+ + Sbjct: 122 AAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +AL+LG E GLR T+ET + + MPG +++LNVS AA V L+ Sbjct: 182 VDETLYGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFE 241 Query: 276 TQNHFA 281 Sbjct: 242 AVRQRG 247 >gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 248 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 15/248 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQT 100 ++ N + G + VS AL + R I ++L + A L L PV+TV + Sbjct: 2 AEQNNDLIAGRNAVSEALRS-QRSINKILLQEGAHGGSLGEIIALAKQKGVPVETVKAEK 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +DK+ K HQG+A AP+ TLD V +++LD + DP N+GA++RS Sbjct: 61 LDKLA-KGLRHQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQDPQNVGALIRS 119 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ +R S +AV+AK ++GA+E++P ++I N+ ++++ G +G Sbjct: 120 ADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEELKQRGCWVVGAD 179 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + I L++GAEG+GL ++ + + M G + +LN S A AV + Sbjct: 180 MDG-VDFYAANMSGPIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSLNASAAGAVLM 238 Query: 274 YI--TQNH 279 Y Q H Sbjct: 239 YEVVRQRH 246 >gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] Length = 243 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I ++L +++ + L NL V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSG-RSIQRILVSEDKVKTGLADIVNLAKSQGIEVRPTPVKQMNK-YD 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L + LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP ++I N+ ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVVQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 247 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 251 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97 T++ + F+ G H AAL + I ++ K +A+A+L A H + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +D++ + HQG+AL A T+D + ++LD + DPHN+G+I Sbjct: 60 KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + +AL++G EGKG+ P ++T M + M G +++LN S AA+ Sbjct: 179 GTDMQG-TDYRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237 Query: 271 VALY 274 + +Y Sbjct: 238 LLIY 241 >gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus N315] gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus Mu3] gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315] gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH9] gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH1] gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus ST398] gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus 04-02981] gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp. aureus CGS03] gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp. aureus CGS00] gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11] gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21172] gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21193] Length = 248 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804] gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii] Length = 245 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I + + + + V V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKDIYVEASRRDKRMLAFLEQAERAGRRVHPVSAERLDGLA- 64 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + ++ + + A GA + +PYI ++NL L+ + G +G + L Sbjct: 125 VVAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY + Sbjct: 185 TVDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQR 243 >gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925] gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum BKT015925] Length = 263 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 108/244 (44%), Gaps = 10/244 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 + + G + V AL + + ++A + ++ + +K V + +D Sbjct: 18 EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + + HQG+ P ++ + +++LD + DPHN+G+I+R+A Sbjct: 78 SMSITGS-HQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR + + + K+++GA E++ +++NL ++ + G G Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMA 196 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMYE 256 Query: 276 TQNH 279 Sbjct: 257 VLKQ 260 >gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] Length = 247 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium extorquens PA1] Length = 268 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 1/236 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P ID Sbjct: 28 REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +++G +AVHQGL E PL +P DA+ + LL+ LD + DPHN+GAI+R+A AF I Sbjct: 87 RLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262 >gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 246 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L G + V AL P KI+ L ++ R + V + +D++ Sbjct: 4 EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + + ++LD + DPHN+GAI+R+A Sbjct: 64 TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + + +AK+++GAL + P ++++NL++ ++++ G + D Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSNTMEELKERGLWFVCADMDG- 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ I L++G EG G+ +E A + M G I +LN S AA V Y Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] Length = 548 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 21/271 (7%) Query: 27 HRDYKKMQSFNQKSRHTSQ-------PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 +RD + Q+F R + + L+G H AAL R I ++ T + Sbjct: 202 NRDEAR-QAFAPDHRQGEELAHTPDAQADDMLWGRHATQAALE-AGRPIHRIWCTSELRS 259 Query: 80 RLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDA 128 + L V+ V + ++ G AVHQG+AL+TA P L A Sbjct: 260 SPKFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQGIALQTASADTLDLPTLVEGCAA 318 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A+GALEH+P Sbjct: 319 LGEPPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLP 378 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ NL +L+ + G++ +GL+ + L + +A++ G+EG+GL T+ Sbjct: 379 VARVVNLNRSLETLKDAGYRVVGLAGEGDVTLAEADLEGPLAIVTGSEGQGLSLLTRRHC 438 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G+ +LN S A A+ LY Sbjct: 439 DQLIRIPLRGVTPSLNASVATAMCLYEVARR 469 >gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] Length = 247 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] Length = 245 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL R I ++L + + + D V+ P + +++ Sbjct: 4 YIVGRNAVKEALK-AGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNR-YE 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L ++ + LL++ D V DPHN+GAI+R+A Sbjct: 62 TDVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E I +++ N+T ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 182 EADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240 >gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666] Length = 264 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 L+G H V L + + ++ AR+ + V+ + + K+ G Sbjct: 22 VLFGFHAVGVRLKTAPQSVLEVFFDASRRDARMRQFTDRAREAGVRLIESDGLRLAKMCG 81 Query: 107 KEAVHQGLALETAPLLS---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ + +A LL+VLD V DPHN+GA LR A Sbjct: 82 SHG-HQGVVARVDAVAQVKSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 140 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 141 GAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 200 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + +AL+LGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 201 KTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 260 Query: 278 NHFA 281 + Sbjct: 261 RQRS 264 >gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] Length = 256 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 15/248 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTI 101 E + G + V L R++ + + AR + + PVK V + + Sbjct: 11 EEGLVLGRNAVIELLK-GPREVECIYICDDVPARGQPISRIVALAKEARVPVKRVDVRRL 69 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D + HQG+A + A T++ + LL++ D + DPHN+GAI+R+A Sbjct: 70 DTLA-NGLNHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIEDPHNLGAIIRTA 128 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G+I KR +A++ ++++GA+EH+P R++NL ++++ + G G + Sbjct: 129 EAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELKARGVWIYGADA 188 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +Q AL++G+EG GL +ET ++ L M G + +LN S AA + +Y Sbjct: 189 SGAR-WDQTDLTGPSALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSLNASVAAGILMY 247 Query: 275 ITQNHFAK 282 K Sbjct: 248 EAVRQRTK 255 >gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter xylosoxidans C54] Length = 245 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ + + + + V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAERAGCRLHPVAMERLDGLA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + ++ + + A GA + +PY+ ++NL ++ + G +G + + Sbjct: 125 VIAPRDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 185 RIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman] gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA131] gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA177] gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21189] Length = 248 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 247 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDK 103 ++LF+YG H + A L+ + I ++ N RL+ H V+ Q ++K Sbjct: 3 KSLFIYGFHGIQAQLDTNPQNILKVSTLDNRQDKRLNTLIQQLDQHGIRVEKTSKQKLEK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ E P D + N L+++LD + DP N+GA LRSA A Sbjct: 63 LSGSR-THQGVVAEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSANA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ K S +A++ K+++GAL + ++NL+ +++ + IGL + Sbjct: 122 AGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIWIIGLDGST 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q + IA+++G EG GLR T+++ +A + M G +++LNVS A +AL+ T Sbjct: 182 DQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFET 241 Query: 277 QNHF 280 Sbjct: 242 SRQR 245 >gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] Length = 274 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 121/269 (44%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 F K SH R+ ++ + H + + LYG HTV+AAL NP RKI +L Sbjct: 9 FKGKSSH----RKPPHGRGGRPAWRDRDDHNAP---VILYGWHTVTAALLNPKRKIRKLF 61 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 AT+NAL RL + P P + V P ID+ +G +AVHQGL E PL + + + Sbjct: 62 ATENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPLPALDIAKLPQD 120 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++VLD + DPHN+GAILRSA AF+ ++TT R+SP + VLAKSASGALE +P + + Sbjct: 121 GIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTV 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL +M GF T+GL S+ L + +AL+LGAEGKGLR T+ET ++A Sbjct: 181 QNLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVA 240 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 L MPG IK+LNVSNA A+ALYI Sbjct: 241 RLDMPGEIKSLNVSNATALALYIGATRLG 269 >gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] Length = 275 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 142/240 (59%), Gaps = 10/240 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++L+G+H V AL NP+R +L+ T+NA RL + + P+ + Sbjct: 37 TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLGEAIAV-GGLEPEIADPRRFTAPLDP 95 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++VHQG ALE PL L+ V +++LD V+DPHN+GAILRSA F Sbjct: 96 QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R+S E+ LAK+ASGALE PY+R++NL A++ + G+ +GL+ ++++ +E Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215 Query: 222 QEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY ++ Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275 >gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] Length = 249 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103 + F+ G + V AL I ++ + + ++ P + +++ Sbjct: 2 KQEFILGKNPVIEALRAGH-AINKIWIAEGSNKGQMTKVVQLAKEQGVLIQNAPKKKLEQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V + HQG+ A +D + ++LD + DPHN+G+I+R+A A Sbjct: 61 LVDS-SNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPHNLGSIMRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR + + +AK+++GA+E+IP +R++N+ + + G G + Sbjct: 120 AGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKRGLWFAGTDAKG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + I L++G+EGKG+ +E + + M G + +LN S AA++ +Y Sbjct: 180 SADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEV 239 Query: 277 QNHF 280 Sbjct: 240 YRRR 243 >gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] Length = 270 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 108/253 (42%), Positives = 148/253 (58%), Gaps = 2/253 (0%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 K RN R ++ + + + LYG H V AL RK+ L AT+ A R+ Sbjct: 7 KGPRNDRRLPPREAPPAEPFRRPSADVVVLYGAHAVREALRARRRKLLTLYATEGAAERI 66 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDH 140 A P + V P+ + +G E+VHQGL LE PL + + + +++VLD Sbjct: 67 APLAAEAGLTP-QIVDPRALTSRLGDESVHQGLLLEARPLPAAEIADIETKSGVVLVLDQ 125 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAILR+A AF+ D ++ T R SP + VLAK+ASGALEH+ + + NL ALQ Sbjct: 126 VTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGALEHVLIVSVVNLARALQ 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G +GL S++ PLE+ + IAL+LGAEGKGLR T+E +A L MPG I Sbjct: 186 ELSQSGRLVVGLDSEAPAPLEETRLQNPIALVLGAEGKGLRRLTRERCDVLARLDMPGPI 245 Query: 261 KALNVSNAAAVAL 273 K+LNVSNA AVAL Sbjct: 246 KSLNVSNACAVAL 258 >gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1] gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1] Length = 246 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++GV+ V A L + R + L K + + P++ +D++ Sbjct: 7 IHGVNPVQALLESG-RPVSSLWVLKGRHGKRVEEMIEGFRARGVPIQFCERTAMDRMADG 65 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ AP + + D + LL++LD V DPHN+GAI+RSA AF Sbjct: 66 GA-HQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K + +A K+++GA E + IR++NL A++++ IGL+ ++ PL Sbjct: 125 VILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIEQLQQRNVWVIGLAGEAGAPLI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G EG GLR T+E +A + M G + +LNVS A VALY Sbjct: 185 GTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244 Query: 281 A 281 A Sbjct: 245 A 245 >gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] Length = 243 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG + V + ++ ++ T+ + + H + + ++ G Sbjct: 4 VVYGRNAVLELIRTRPEEVEKIYFQFNTEQSKLKEILVTAKRHNISIGKARNNRLVELSG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + + QL+++LD + DPHN+GAI+R+A A + D Sbjct: 64 TDK-HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +A +AK+++GAL HI ++ NL+ ++++ GF GL D +K Sbjct: 123 VIIPHDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ND A+++G+EGKG+R ++ ++ L + G +++LN S +AA+ LY Sbjct: 183 EIDFNDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQR 241 >gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] Length = 246 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L G + V AL P KI+ L ++ R + V + +D++ Sbjct: 4 EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + + ++LD + DPHN+GAI+R+A Sbjct: 64 TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + + +AK+++GAL + P ++++NL+ ++++ G + D Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSKTMEELKERGLWFVCADMDG- 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ I L++G EG G+ +E A + M G I +LN S AA V Y Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus weihenstephanensis KBAB4] Length = 247 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL R I ++L + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALR-AGRDINKILVAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ + ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis HAW-EB3] Length = 246 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102 + F +G+H V A L + ++ ++ RL + + V+T + +D Sbjct: 2 KKQDFTFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLATLLQMAAEYGVSVQTSARKVLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + + + ++LD V DPHN+GA LR+A A Sbjct: 62 EK-SDNGQHQGVLARVKAVKQLNDNDLLALVEKTETPFFLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +A+ +GAE KGLR T+E+ S+A + M G + +LNVS A+ + L+ Sbjct: 181 DSDLYKTDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 17/247 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDWDANLPHPFPVKTVPP 98 Q F+ G H V AAL + S I +L +N ++ + A + VP Sbjct: 5 QENEEFVMGRHPVVAALKSDS-PINKLFIQTGIKKDENIISEILKLARKKRLV-ISEVPK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 Q +D++ HQG+ L A T+D + ++LD++ DPHN+G+I+ Sbjct: 63 QKLDRL-SVGQNHQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLGSII 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII K + +AV+AK+++GA+E +P R++NL ++++ S G G Sbjct: 122 RTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMWVFG 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 182 TDIEG-TDYRRWDAKGSVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASV 240 Query: 272 ALYITQN 278 +Y N Sbjct: 241 LIYQGFN 247 >gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu] Length = 247 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] Length = 268 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 109/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P ID Sbjct: 28 REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+R+A AF I Sbjct: 87 RLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262 >gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK355] Length = 233 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 55 HTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V+ AL N K++ + D + P +T+ ++ AVHQG Sbjct: 2 HAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMTD-GAVHQG 60 Query: 114 LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 L A + + ++ LL++LD + DPHN+G+ILR+A A + G+I K Sbjct: 61 FVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKH 120 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + V+AK+++GA+EHIP R++NL+ L K+ GF G P + Sbjct: 121 RAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TPSHKWNTAG 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 180 KLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 232 >gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] Length = 246 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V AL R I +LL T + A PV+ P +D++V Sbjct: 1 MIYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAR-EQRVPVRVEPRAALDRLV-P 58 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A D + + LL++LD V DPHN+GAILR+A A Sbjct: 59 SGHHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEASGVQ 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+ +R + ++V+AK+++GA++++P R+ NL+ ++++ G L +++ K Sbjct: 119 GVFIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAPKAY 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL+ G EG G+RP ++ AH+ M G + +LNVS +AA+ LY Sbjct: 179 TELDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQR 238 >gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2] gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter eiseniae EF01-2] Length = 248 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + ++ ++A R + + I K+ G Sbjct: 6 VLFGFHAVGVRLKTAPESVIEIYHEATRRDARMRQFLERARAAGARLIEADGMRIAKLAG 65 Query: 107 KEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A P LL A LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG D+ Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIGTCDDAP 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL+LGAEG G+R +T++T +A + M G +++LNVS A+ + LY Sbjct: 185 GTLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEAL 244 Query: 278 NHFA 281 A Sbjct: 245 RQRA 248 >gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum DSM 180] Length = 247 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEA 109 G+H+V AAL + + ++ + RL A+L ++ V +++ Sbjct: 9 GIHSVRAALKFGAEGVDEVWLERARRDRRLQELADLAREAGIRLRQVERAELERAAA-GV 67 Query: 110 VHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG T L+ LD + L++LD V DPHN+GA LR+A A + Sbjct: 68 NHQGALAWVRVPSSRTESDLAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + V+ K ASGA E +PY++++NL + + G IG + ++ L Sbjct: 128 IAPKDNAVGLTPVVCKVASGAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDELYA 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++GAEG GLR T+E + L M G +++LNVS AA V LY Sbjct: 188 ADLTGPLGLVMGAEGSGLRRLTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245 >gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] Length = 294 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 144/246 (58%), Gaps = 7/246 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ T NA +L DA + + Sbjct: 47 KEQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVI 105 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG LE PL L + +++LD V DPHN+GAILRS Sbjct: 106 DPRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLLLDRVTDPHNVGAILRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E + K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285 Query: 271 VALYIT 276 +ALY + Sbjct: 286 IALYAS 291 >gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] Length = 243 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I +++ +++ + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSG-RSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L V LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETNHDVPLLILTDGVEDPHNMGAIIRTAECVGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] Length = 248 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGKHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 258 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 9/237 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDK 103 +N +LYG HT AL N +R +LL T+N+ + + V+ V + + + Sbjct: 8 KNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILSE 67 Query: 104 IVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ++ K A HQG+AL+ AP+L ++ +S +++LD V D HNIG+ILR++ F+ Sbjct: 68 VLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACFN 127 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ +SPSE+A +AK+ASG L+ +P I ++N+ ++ + G+ G S++K+ Sbjct: 128 VDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAKE 187 Query: 219 PLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ KI +I G+EGKG+R +E + + M +I +LNVSNAAA+ LY Sbjct: 188 NIDEIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244 >gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133] Length = 248 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + + GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL N1-067] Length = 251 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152 I+K+V VHQG+A + A LD + N+ ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 251 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152 I+K+V VHQG+A + A LD + N+ ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JKD6159] Length = 248 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + + GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46] Length = 248 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVVVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans SPH-1] Length = 263 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V + + I ++ ++A R D + + + K+ G Sbjct: 6 VLFGFHAVGVRMKTAPQSIIEVYYEATRRDARMRQFLDRAKSAGVRLIEADGERLAKLAG 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L L+ + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEAVAQVHSLDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 125 GAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIWIIGTSDDAP 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L + AL+LGAEG G+R T++T + + M G + +LNVS A+ V LY Sbjct: 185 KTLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEAL 244 Query: 278 NHFAK 282 + Sbjct: 245 RQRGQ 249 >gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] Length = 261 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 13/254 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVP 97 R + +++ G H AAL NP+R +L T L + A + V V Sbjct: 2 GRTRNHGGCMWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVA 61 Query: 98 PQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146 + I KI+G + HQG+AL L +R + +++LD V D +N Sbjct: 62 AEKISKILGHGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINN 121 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA F D +I + +SPSES + K++SGA + +P +++ NL ++ + G Sbjct: 122 VGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNG 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G+ + K L + ++ A+ILG+EGKG+R T+E + + M I +LNVS Sbjct: 182 YWCYGMDAGGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVS 241 Query: 267 NAAAVALYITQNHF 280 NAAA+ALY + Sbjct: 242 NAAAIALYSSYLQL 255 >gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Thiomonas sp. 3As] Length = 242 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG H V A L + + ++A + +KT+ + + + G Sbjct: 4 LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63 Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ + L L LDAV + L++ LD V DPHN+GAILR+A A + Sbjct: 64 DR-HQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + +A+ ASGA E +PY+ ++NL +L ++ G +G + + Sbjct: 123 IAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYA 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEG G+R +ET + + M G +++LNVS AA V LY Sbjct: 183 ANWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 253 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + + ++ ++A R D + + K+ G Sbjct: 7 VLFGFHAVGVRLKTAPKSVLEVFYDVSRRDARMRQFTDRVREAGVRMVECDGLRLAKMCG 66 Query: 107 KEAVHQGLALETAPLLSPT---------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ + T +A LL+VLD V DPHN+GA LR A Sbjct: 67 SHG-HQGVVARVDAVAQVTSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D++ Sbjct: 126 GAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWCIGTSDDAE 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + +ALILGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 KTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEAL 245 Query: 278 NHF 280 Sbjct: 246 RQR 248 >gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 255 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + + V+TVP +D Sbjct: 8 EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDF 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +M+LD + DPHN+G+ILR+A A Sbjct: 67 LS--NAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPHNLGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G ++++ Sbjct: 125 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWVAGTAANN 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 185 ATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 244 Query: 277 QN 278 Sbjct: 245 FR 246 >gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] Length = 263 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 144/246 (58%), Gaps = 7/246 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ E ++L+G+H V AL NP R+ +L+ T NA +L+ +A + V Sbjct: 15 KEQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKLE-EAIAASGVEPELV 73 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L +++LD V DPHN+GAILRS Sbjct: 74 EPRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVILLDRVTDPHNVGAILRS 133 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + G+ +GL Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193 Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253 Query: 271 VALYIT 276 +ALY + Sbjct: 254 IALYAS 259 >gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101] Length = 556 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 15/254 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFP 92 + R + P + ++G H AAL + R I ++ T +L +A Sbjct: 203 ESERFNAGPADDLIWGRHAAQAALESD-RPIHRIWCTPEMRFQPRFMQLLREAK-AGGVL 260 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPH 145 V+ V + ++ AVHQG+ L+ A L +D R LLM LD + DPH Sbjct: 261 VEEVTWARLGQLTD-GAVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPH 319 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A G++ +R S + +AK A+GALEH+P R+ NL +L+ + Sbjct: 320 NLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEE 379 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ IGL+ ++ L + + + ++ G+EG GL T++ + + + G +LN Sbjct: 380 GYRVIGLAGEAGVALSEADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNA 439 Query: 266 SNAAAVALYITQNH 279 S A A+ LY Sbjct: 440 SVATAMVLYEVARR 453 >gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I +++ +++ + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALRSG-RSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L V LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4] gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4] Length = 268 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 109/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P ID Sbjct: 28 REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+R+A AF I Sbjct: 87 RLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262 >gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 242 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ ALN + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L + + +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + + K+++GAL+H+P +R++NL+ L K+ S GF G D Sbjct: 119 TGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 -TVYSKWNTKGKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] Length = 257 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 13/260 (5%) Query: 33 MQSFNQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-- 89 M+ N+K+++T + E + G + V AL I + +A + L Sbjct: 1 MRDKNEKTKNTENAAEEELILGRNPVIEALKADKL-IDIIFVNPDAKGSISLILKLARER 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 PVK V Q +D + A HQG+ A +D + +++ D + Sbjct: 60 DIPVKQVREQKLDFMA-HGAAHQGVIAIGACAEYVEVDDILKIAADKGEDPFIIICDEIE 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A A GII KR S S + + K+++GA +P R++NL A+ + Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G + + L++G+EG G+ +E + L M G I + Sbjct: 179 KKQGIWIYGTDGAGEN-YSGVDMRGPVGLVVGSEGFGMGRLMKEKCDFLLSLPMAGKITS 237 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN S AA + +Y AK Sbjct: 238 LNASVAAGIFMYEVVRQRAK 257 >gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] Length = 310 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A +R NH K+ ++ ++ E + G + V L PS ++ L + A Sbjct: 41 AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVE-AD 99 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + P+ VP +D++ +HQG+AL+ P D + Sbjct: 100 ERLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT 158 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVA 218 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT AL+ G + +GL + ++ +D I +++G+EGKGL ++T Sbjct: 219 RATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDE 278 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 279 VVSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii SP-6] Length = 244 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 9/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N L+G H V+ + + ++ ++A R + + + ++ Sbjct: 4 NSLLFGFHAVTVRVKTAPASVLEVHVDPARRDARMRQFVARVEAAGIRLIETDDKRLGQM 63 Query: 105 VGKEAVHQGLALET---APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G HQG+ AP+ L LDAV L++VLD V DPHN+GA LR A Sbjct: 64 AGNTR-HQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGA 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K ++ +A +AK ASGA E +PY ++NL L ++ + IG S D+ + Sbjct: 123 HAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVIGTSEDATQS 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + +A++LGAEG G+R T++T + H+ M G +++LNVS A+AV LY Sbjct: 183 IYDIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQ 242 Query: 280 F 280 Sbjct: 243 R 243 >gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] Length = 269 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 110/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P ID Sbjct: 29 REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPELVRPSAID 87 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+R+A AF I Sbjct: 88 KLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 147 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 148 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDA 207 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 208 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 263 >gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] Length = 242 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG H V A L + + ++A + +KT+ + + + G Sbjct: 4 LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63 Query: 108 EAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ + L + LDAV + L++ LD V DPHN+GAILR+A A + Sbjct: 64 DR-HQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + +A+ ASGA E +PY+ ++NL +L ++ G +G + + Sbjct: 123 IAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYA 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEG G+R +ET + + M G +++LNVS AA V LY Sbjct: 183 AKWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] Length = 251 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+VG HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU121] Length = 248 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIISGH-SINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDF 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 61 LS--TAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S S + +AK+++GA++H+P IR++NL + ++ + GF G +++ Sbjct: 119 SGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 FR 240 >gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 251 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97 T++ + F+ G H AAL + I ++ K +A+A+L A H + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +D++ + HQG+AL A T+D + ++LD + DPHN+G+I Sbjct: 60 KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLF 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + +AL++G EGKG+ P ++T M + M G +++LN S AA+ Sbjct: 179 GTDMQG-TDCRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237 Query: 271 VALY 274 + +Y Sbjct: 238 LLIY 241 >gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] Length = 263 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 151/252 (59%), Gaps = 11/252 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP-V 93 ++++ + E ++L+G+H V AL NP+R+ + + TKNA RL D L P Sbjct: 10 KERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP 69 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIG 148 + P+ + ++VHQG ALE PL ++ N +++LD V DPHN+G Sbjct: 70 EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVLLDKVTDPHNVG 129 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I R++ E+ LAK+ASGA+E PY+R+ NL DA+ ++ + G+ Sbjct: 130 AILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAMGYL 189 Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++++ +EQ ++ + IAL+LGAEG GLR KT+ET ++ + G +LNV Sbjct: 190 VLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNV 249 Query: 266 SNAAAVALYITQ 277 SNAAAVALY+++ Sbjct: 250 SNAAAVALYVSR 261 >gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] Length = 251 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGVQKGVLKQVLASAKDRKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + N+ ++LD + DPHN+G+I+R Sbjct: 61 KIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASIL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] Length = 248 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIISGH-SINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDF 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 61 LS--TAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S S + +AK+++GA++H+P IR++NL + ++ S GF G +++ Sbjct: 119 SGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSNGFWVAGTEANN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 FR 240 >gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629] Length = 255 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V A + K+F L ++ + H + V + +D++ + Sbjct: 13 YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQM-SE 71 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +A + + +++LD + DPHN+GAI+R+A Sbjct: 72 TGKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAH 131 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 132 GIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADM-GGTTM 190 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 191 YDLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQR 250 Query: 281 AK 282 K Sbjct: 251 LK 252 >gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 256 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 14/242 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105 L G V AL + R I +L+ K A R P+ + +D+ V Sbjct: 11 DLLAGRQPVMEALKSG-RAINKLVVAKGAREGSIREILGMARDRGIPITELERTVLDREV 69 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ AP+ ++ + +++LD + DPHNIGA+LR+A Sbjct: 70 ---RHHQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAG 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + ++ +AK+++GA+E++P R++NL + ++ G IG + D+ + Sbjct: 127 AHGVIIPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPR 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P ++ + LI+G+EGKG+ P +E + + M G + +LN S A A+ +Y Sbjct: 187 PYFRQDFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVR 246 Query: 279 HF 280 Sbjct: 247 QL 248 >gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 310 Score = 244 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A +R NH K+ ++ ++ E + G + V L PS ++ L + A Sbjct: 41 AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVE-AD 99 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + P+ VP +D++ +HQG+AL+ P D + Sbjct: 100 ERLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT 158 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVA 218 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT AL+ G + +GL + ++ +D I +++G+EGKGL ++T Sbjct: 219 RATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDE 278 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 279 VVSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 244 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 12/244 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG++ V L + +L T+ A V++ P +D++ Sbjct: 3 VVYGLNPVREVLRAGGEGLSELWLAEGGTRGAAFGELERLGRAAGAKVRSAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A ++ + L++VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ K + + +AK+++GA+E P R++N++ L+ + G ++ L++D Sbjct: 122 AHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEAGIWSVALAADGDA 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL IAL+LG+EG+GLRP ++T A + M G + +L+VS +AAVALY Sbjct: 182 PLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFAK 282 + Sbjct: 242 QRGR 245 >gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] Length = 519 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%) Query: 25 RNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 R RD + + N ++ +YG H V AAL +R + ++ T Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275 Query: 81 -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 DA V VP + I ++ AVHQG+A + AP L + Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++V D + DPHN+GAI+R+A A G++ +R + +A +AK A+GALE P R+ Sbjct: 335 PVIVVADGITDPHNLGAIIRTAEALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL+++ GF G + ++K+ + + + + L++G+E +GL T+E + Sbjct: 395 VNLNRALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LN S AA + LY + Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQRQQ 484 >gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] Length = 291 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 101/275 (36%), Positives = 152/275 (55%), Gaps = 13/275 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSF--NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 D + RD KK ++++ + E ++L+G+H V AL NP R+ + + T Sbjct: 16 DGRHEGANAKDRDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFVVT 75 Query: 75 KNALARL--DWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 KNA RL L P + P+ + ++VHQG ALE PL ++ Sbjct: 76 KNAFDRLGDAVSIGLKDGGPEPEMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCM 135 Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 N +++LD V DPHN+GAILRSA F +I R++ E+ LAK+ASGA+E Sbjct: 136 GDGVNPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMER 195 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPK 243 PY+R+ NL DA+ ++ G+ +GL ++++ +EQ + IAL+LGAEG GLR K Sbjct: 196 QPYLRVRNLADAIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEGPGLRDK 255 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ET ++ + G +LNVSNAAAVALY T++ Sbjct: 256 TKETCDALVKIDFAGEFGSLNVSNAAAVALYATRS 290 >gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina MBIC11017] Length = 309 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 21/283 (7%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 S K H +++S +++ + + + +YG H+V +AL + R + ++ Sbjct: 24 SSAKKPHRQSTSSRPPQKPRIRSKDKEPAQSEEEQGDLIYGRHSVLSALEH-QRSLNRVW 82 Query: 73 ATKNALARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++RL +D + V + ++++ ++A HQG+A + A Sbjct: 83 V----VSRLRYDPRFHSLLNQAKSQGTIIDEVDHRRLNQLT-QQATHQGIAAQVAAYEYL 137 Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + +A +++ D + DPHN+GA++R+A A G+I +R + ++V+A Sbjct: 138 DISTLIEQANAATPKPVIIAADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVA 197 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K A+GALE + R+ NL L+++ GF GLS+ + + + + L++GAEG Sbjct: 198 KVATGALETLAIARVVNLNQGLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVLVIGAEG 257 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL TQ M + + G +LN S A +ALY Sbjct: 258 PGLSVSTQHHCDQMVSIPLQGKTASLNASVATGMALYEVYRQR 300 >gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sibiricum 255-15] Length = 254 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTID 102 FLYG + V AL + R++ +L + L + V+T VP + Sbjct: 7 EGQDFLYGRNPVLEALRSG-REMNKLFIQEGQQKGPLAVIHAMAKEAGVQTQIVPRSKLH 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + G + HQG+ A LD + + L+++LD + DPHN+G+ILR+A Sbjct: 66 GLTGSD-NHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILRTAD 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S + V+AK+++GA+EHIP +R++NLT ++ + G +G + Sbjct: 125 AVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGTDAR 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +++G+EGKG+ +E + HL M G + +LN S AA++ LY Sbjct: 185 ESDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYE 244 Query: 276 TQN 278 Sbjct: 245 VYR 247 >gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 254 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LL T+N + + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 NKILNDVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ IP I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118] Length = 256 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 20/250 (8%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R D + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYFEPTRRDARMRQFLDKANEAGARLIEADGIRLAKLCG 65 Query: 107 KEAVHQGLALETAPLLS-PTLDAV---------------RNSQLLMVLDHVNDPHNIGAI 150 HQG+A L +LD + R L++VLD V DPHN+GA Sbjct: 66 GHG-HQGVAARVHELAQVKSLDELLEQLEAAQTDRPPTEREEALILVLDGVTDPHNLGAC 124 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR A +I K ++ +A +AK ASGA E +PY ++NL L ++ I Sbjct: 125 LRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWII 184 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G S + K + Q +AL+LGAEG G+R T +T + + M G +++LNVS A+ Sbjct: 185 GTSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCDELVSIPMRGAVESLNVSVASG 244 Query: 271 VALYITQNHF 280 V LY Sbjct: 245 VCLYEALRQR 254 >gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] Length = 304 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 20/277 (7%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K +K + R+ K ++ R T PE +YG HTV AAL N R + + Sbjct: 17 KVKPSSKPPHSPREDKPAIHPRRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNR 75 Query: 71 LLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 + + L +A V Q +D+I + A HQG+ + P Sbjct: 76 VWVISQLRSDTRFQPLLQEAKAKGAI-VDGASYQRLDQIT-RGANHQGIVAQVTPYKYWD 133 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + + +L+ +D + DPHN+GAI+R+A A G+I +R + +A + K Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAVGINATVMK 193 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GALE P R+ NL +L ++ S GF G + +PL I L++G+EG+ Sbjct: 194 VAAGALETFPVARVINLNRSLTELKSAGFWIYGTVAGEFQPLYNANLTGAIVLVVGSEGE 253 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 GL E + + + G I +LNVS A +ALY Sbjct: 254 GLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYE 290 >gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] Length = 504 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 13/252 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVK 94 S P + L+G H AAL R I ++ T + + + V+ Sbjct: 171 SSHAAEPPADDLLWGRHATQAALE-AGRPIHRIWCTSDMRSAPRFLGLLREAKASGVLVE 229 Query: 95 TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + +I G AVHQG+AL+TA P L ++ LL+ LD + DPHN+ Sbjct: 230 EVTWARLGQITG-GAVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNL 288 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA A G++ +R S + +AK A+GALEH+P R+ NL +L+ + G+ Sbjct: 289 GAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGY 348 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +GL+ + L + + ++ G+EG GL T+ + + + GI +LN S Sbjct: 349 RVVGLAEEGDLTLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASV 408 Query: 268 AAAVALYITQNH 279 A A+ LY Sbjct: 409 ATALCLYEVARR 420 >gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] Length = 335 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 143/276 (51%), Gaps = 19/276 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIF 69 KDS ++ L+R +K + K+ +Q N +++G H+V AL + R I Sbjct: 57 KDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEAL-SSERAIN 115 Query: 70 QLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 ++ T + + L ++ V + ++ A HQG+AL+ A + + Sbjct: 116 RIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-YGASHQGIALQLACSRTIS 174 Query: 126 LDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+ + + + +++ LD + DPHN+GAI+RSA AF C GII +R S + +AK Sbjct: 175 LEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAK 234 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GALEH+ R+ NL AL+++ GF +GLS D + + ++ + +I+G+E K Sbjct: 235 VAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEK 294 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ TQ+ + + + G +LN S AAA++L+ Sbjct: 295 GISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLF 330 >gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 96/264 (36%), Positives = 149/264 (56%), Gaps = 9/264 (3%) Query: 19 HYAKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 H + + + NQ+ SR + ++L+G H V AAL NP+RK LLAT+NA Sbjct: 5 HPKRPPNTDVATRPGRPENQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENA 64 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLL 135 +L + + ID + AVHQG+AL PL L+ V + + Sbjct: 65 AQKLP-----AGVISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRI 119 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 VLD V+DPHN+GAI RSA AF +G++ R +P + ++AKSA+GA+E + IR N+ Sbjct: 120 AVLDQVSDPHNLGAIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNI 179 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 AL+++ F T+GL+ +S + L++ +K K+A++LGAEG GLRP + + +A + Sbjct: 180 ARALEQLAEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARI 239 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 + +++LNVSNAAA+A Y Sbjct: 240 PIAAQMESLNVSNAAAIAFYEASR 263 >gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sulfurreducens PCA] gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter sulfurreducens KN400] Length = 245 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + LYG+++V AL SR+ F+L ++ R PV+T + + + Sbjct: 2 KEEILYGINSVMEALR-GSRRAFELFVSRETHDRRTEKLLAFAAERGVPVRTRDKRDLAR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+AL L+ + L++VLD + DPHN+GA++RSA Sbjct: 61 LCGTD-HHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + + +A + K ++GA E IP +++N+ AL+ + GF G + + Sbjct: 120 AGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +++G EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 180 ASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1 BAC clone 67] Length = 319 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 113/284 (39%), Positives = 163/284 (57%), Gaps = 11/284 (3%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVS 58 S++ + D R R +K +F KSR +P + LYG+H+V Sbjct: 4 DSKRPYHPLDRQPKPAREGSRMGEK-PAFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVK 62 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 A NP R+ +++AT+NA+ RL D + P + V P+ I +++ +AVHQGL +E Sbjct: 63 EAFANPRRRFRRIVATENAVQRLTED-GVNLPLAPELVKPEAIGRLLTPDAVHQGLYVEA 121 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L L + ++++ LD V DPHN+GAILRSA AF G+I T R+SP + VLAK Sbjct: 122 ERLPLLPLGKLPRDRIILALDQVTDPHNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAK 181 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +ASGALEH+P + NL AL + GF IGL S++ + + I L+LGAEG+ Sbjct: 182 AASGALEHVPMAGVQNLARALTTLKDEGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGR 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GLRP T+E + +A L +PG IK+LNVSNAAA++LY Q + Sbjct: 242 GLRPSTRELCSHLARLELPGAIKSLNVSNAAAISLYAVQQAITR 285 >gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 302 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 126/239 (52%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103 + + G + V L+ P+ +F + TKN RL N+ P+ V Q +D+ Sbjct: 55 DELVVGRNPVIECLHAKVPAVAMFVAIGTKN-DQRLVEAVNIAASRSIPIVEVSKQKLDE 113 Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + G +HQG+ L+ L D + + +++ LD++ DP N+GA++RS AF DG+ Sbjct: 114 MTG-NGLHQGIGLQIPEYHYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVAAFGADGV 172 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S S +AV +S++G +P +++N+T AL++ G+Q IGL + + + Sbjct: 173 VIPERRSASVTAVTWRSSAGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAGGEHTHDS 232 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + +++G+EGKGL +ET ++ + M G +++LN S AA V L + Q Sbjct: 233 YDGTGPVVIVVGSEGKGLSRLVKETCDTIVTIPMEGWVESLNASVAAGVVLAEFARQRR 291 >gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] Length = 262 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 97/261 (37%), Positives = 150/261 (57%), Gaps = 8/261 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + + KK Q +K ++ +N++L+G+H V AL NP+R+ +L+ T NA +L+ D Sbjct: 2 SKKPTKKPQWVIEKEQNKKAGVDNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKLE-D 60 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHV 141 A + V P+ + + +VHQG ALE PL +L +++LD V Sbjct: 61 AIAAAGITPEVVDPRRFNAPLDPNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRV 120 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAILRSA +I T+ +S E+ LAK+ASGALE PY+R+ NL D + + Sbjct: 121 TDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITE 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + GF +GL +++ +E ++ +AL+LGAEG GLR KT+ET + + G Sbjct: 181 LQNMGFVVLGLDGEAEDTIESCLQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASG 240 Query: 259 IIKALNVSNAAAVALYITQNH 279 +LNVSNAAA+ALY ++ Sbjct: 241 GFGSLNVSNAAAIALYASKER 261 >gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402] gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 263 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + + G H V +A+ + I ++L + + V+TVP +D + Sbjct: 21 DEIIVGRHAVKSAVTSGHE-INKVLIQEGINKSQISNLLNLCKEKKIVVQTVPKSKLDHL 79 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ +P L+ +++ +M+LD + DPHN+G+I+R+A A Sbjct: 80 S--DVPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHNLGSIIRTADAIG 137 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGI+ KR S S + + K+++GA+EH+P +R++N+ A+ K+ G+ G + Sbjct: 138 IDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAGYWVAGTDAKQSV 197 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + +A+++G+EG+G+ +E + HL M G + +LN S AA++ +Y Sbjct: 198 DYRKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYR 257 >gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1] Length = 255 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V A + K+F L ++ + H + V + +D++ + Sbjct: 13 YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQM-SE 71 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +A + + +++LD + DPHN+GAI+R+A Sbjct: 72 TGKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAH 131 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 132 GIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADM-GGTTM 190 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 191 YDLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQR 250 Query: 281 AK 282 K Sbjct: 251 LK 252 >gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 261 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 15/257 (5%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPF 91 F + Q F+ G H AA+ + +I ++ A + D Sbjct: 4 GFPVSNNEQDQTAADFVIGRHPAMAAIKSDQ-QINKVFIQSGLQADVLNDIAKIAKKRNL 62 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V+ VP Q +D++ A HQG+A+ A T+D + + ++LD++ DP Sbjct: 63 IVQYVPKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+I+R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ Sbjct: 122 HNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQE 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + Q + + LI+G EGKG+ P +++ M + M G +++LN Sbjct: 182 AGLWIFGTDMNG-TDYRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLN 240 Query: 265 VSNAAAVALYI--TQNH 279 S AA++ +Y T H Sbjct: 241 ASVAASLLIYQGYTSRH 257 >gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKI 104 + + G + V AL R I +L+ K A L L P++TV +DK+ Sbjct: 11 SEIIAGRNPVREALR-AGRPINKLVMAKGTAAGPLSEIIKLAREKNIPIQTVDKTHLDKL 69 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+ AP ++ + +++LD +NDPHN+GAI+R+ A Sbjct: 70 VA-GTPHQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVMLDEINDPHNLGAIIRTVDAA 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII +R + + +A +A++++GA+E++P R++NL ++++ G +G D Sbjct: 129 GAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQLKELGLWVVGADMDGP 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G EGKGL +E + L M G + +LN S AAA+ +Y Sbjct: 189 EVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGSLNASVAAALLVYEVI 248 Query: 278 NHF 280 Sbjct: 249 RQR 251 >gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Prochlorococcus marinus str. MIT 9313] gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 535 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 20/293 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57 S+++S++ + S + R R + S + E L+G H Sbjct: 127 SRRRSDERLGRRPSLGERSRPADRQLPSKRFDPSTSDRVPEAETFGPAAADDLLWGRHAS 186 Query: 58 SAALNNPSRKIFQLLATKN--ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113 AAL R I ++ T + + R V+ V + ++ G AVHQG Sbjct: 187 QAALE-AGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 244 Query: 114 LALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + L+TA + L ++ S LL+ LD + DPHN+GAI+RSA A G++ + Sbjct: 245 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 304 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ + L + Sbjct: 305 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 364 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G+E +G+ T+ + + + G+ +LN S A A+ LY Sbjct: 365 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 417 >gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium praevalens DSM 2228] Length = 246 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL RKI ++ + A++ D P+ + Q +++ Sbjct: 4 IEGRNPVYEALK-GKRKIHRIFIQEEITAKIIEDILELAAEKNIPISRISSQKLNESAQS 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ E L S L+ V L+++LD + DPHN GAI+R+A A D Sbjct: 63 HA-HQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKDPHNFGAIIRTAYAAGAD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ +R + + V+ K+A+GA EH+P +++SN+ A++ + F G + + + Sbjct: 122 AVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLKEANFWIAGADAAADQTH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++G+EG GLR +E + + M G + +LN S AA+V +Y Sbjct: 182 FEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241 Query: 281 AK 282 K Sbjct: 242 GK 243 >gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] Length = 247 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 254 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LL T+N + + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 NKILNDVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 272 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H + A+ R I ++L N D H V TV +D +V Sbjct: 27 ILAGRHAIIEAIK-AGRGINRILLADNVRGGGVNELRDLAREHGITVDTVGRSKLDALVS 85 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ++ HQG AP+ ++ + LL++LD + DP N+GA+LR+A A Sbjct: 86 QDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGV 145 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G ++ Sbjct: 146 HGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRALKEQGFWIAGADMSGEET 205 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + L++G+EG+G+ T++ L M G I +LN S A A+ +Y Q Sbjct: 206 YDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKINSLNASVAGAILMYEAQRQ 265 Query: 280 F 280 Sbjct: 266 R 266 >gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTI 101 LYG+H V A+ + R++ +L +++ L +L L V P + Sbjct: 2 EVLYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLA-GVRVSIEPKDQL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAV 155 ++ G +A HQG ++ + + + + LD V DPHN+GA+LRSA Sbjct: 61 TRVAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFDKRFFLALDGVEDPHNLGALLRSAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 DG++ R S S V+AK+++GA EH+ R++NL +L++M +GL Sbjct: 120 GAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLDER 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 N L+LG+EG GL T++T + + M G + +LNVS A AV +Y Sbjct: 180 GTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 239 Query: 276 TQNHFAK 282 ++ Sbjct: 240 ALRQRSQ 246 >gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU 1054] gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia HI2424] Length = 247 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] Length = 234 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG V L+ K+++ K L D + V + DKI + Sbjct: 4 IYGRKPVLDTLDTDI-KVYKAYILKQNSKLVDKIIDKLNQKNIEISFVDKRFFDKI---D 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ LE +L+ + +S L++LD + DPHN+GAI+RSA +F D +I +R Sbjct: 60 MNHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAIIRSAESFGFDAVIIPERR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S ++ + K+++GA+ +I +R++NLT ++ + GF GL+ ++ + K Sbjct: 120 SASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIYGLAGEAHSDISHADLRGK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G EG+G+ +E + ++ M G + +LN S AAA+++Y Sbjct: 180 VGLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230 >gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262] gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e] gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes Clip81459] gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S] gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161] gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL J2-064] gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL J1-208] gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL J2-003] gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL J1-175] gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e] gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262] gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220] gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. Scott A] Length = 251 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus flavefaciens FD-1] Length = 254 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 9/252 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++G + V AL + + + L +K Sbjct: 2 EKEKNFSDERSEDIIFGRNPVIEALKSDANLDCIYICGSGGSLNLIRKLAKDKGVVIKDA 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 + + ++ G A HQG+A A +++ + +++ D + DPHN+GA Sbjct: 62 QEKKLSQLSG-GASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGA 120 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A DGII KR S S +A + K+++GA ++P R+SNL + + G Sbjct: 121 IIRTAETSGADGIIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWI 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + Q AL++G+EG G+ Q+ M L M G I +LN S AA Sbjct: 181 YGTDASGTE-YTQTDFTGSCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAA 239 Query: 270 AVALYITQNHFA 281 + +Y + Sbjct: 240 GIFMYEILRQRS 251 >gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] Length = 258 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 7/247 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++L+G+H V AL NP+R+ QL+ T NA A+L+ DA + V Sbjct: 10 KEQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKLE-DAIAEAGIAPEVV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 P+ + +VHQG LE PL L+ V + L++LD V DPHN+GAILRS Sbjct: 69 DPRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I TK +S E+ LAK+ASGALE PY+R+ NL DA++ + G+ +GL Sbjct: 129 AEVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYLVLGLD 188 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + +E + ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA Sbjct: 189 GEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQ 277 +ALY ++ Sbjct: 249 IALYASR 255 >gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 255 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 15/247 (6%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVK 94 K ++ N F+ G H AAL + + I ++ AL + A H + Sbjct: 2 KPVENNEENNDFVIGRHPAVAALRS-QQTINKVFLQSGLKAEALDEIRQLAKKRHLV-IS 59 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 VP Q +D ++ HQG+AL + T+D + + +VLD V DPHN+ Sbjct: 60 EVPKQKLD-LLTDHQNHQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNL 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A GII KR + ++V+AK+++GA+E +P R++NL + ++++ G Sbjct: 119 GSILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGV 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ALI+G EGKG+ +ET M + M G +++LN S Sbjct: 179 WVFGTDM-AGTDYRDWDAKGASALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASV 237 Query: 268 AAAVALY 274 AA + +Y Sbjct: 238 AAGLLMY 244 >gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 247 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] Length = 255 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF 91 M+ ++ + + G H V AAL + R + ++ + A A Sbjct: 5 MRDGARRRSAQGEEAVDLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146 V+ VP +D++ HQG+ + AP LD V S L++VLD + DPHN Sbjct: 64 VVQFVPRSRLDEMAS---AHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G Sbjct: 121 FGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240 Query: 267 NAAAVALYITQNHFA 281 AA V LY A Sbjct: 241 VAAGVLLYEAVRQRA 255 >gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 249 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+YG H +L + I ++ ++ + ++ P +D++ Sbjct: 7 TEFVYGHHASVESLKSTQE-INKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDEL 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ L A ++D + + ++LD + DPHN+G+ILR+A A Sbjct: 66 TD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+EH+P R++NL + ++++ G + Sbjct: 125 GVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y Sbjct: 184 DDYRRWDANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 253 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95 KS H + E F+YG + AL +++I ++ ++ + ++ Sbjct: 2 KSEHQAPNETGFIYGHYASVEALK-GTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+EH+P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + ALI+G EGKG+ P ++ SM + M G +++LN S A Sbjct: 180 VFGTDM-AGEDYRHWDATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVA 238 Query: 269 AAVALY 274 A++ +Y Sbjct: 239 ASLLIY 244 >gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162] Length = 247 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETR 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A T+D + L++LD+V DPHN+GAI+R+A G Sbjct: 65 A-HQGVIAQAAAYEYSTVDEILARAEEKGEPPFLILLDNVEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+ + P +++N+ ++++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRMIEELKEKGIWFVCADMGGE-IMY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241 >gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 249 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I +L + + + V+ VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPDSIKELYVEASRRDKRMQTFIEQAQAANIRVRPVPAERLDGLA- 64 Query: 107 KEAVHQGLAL-----ETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+ E A + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDPHNLGACLRTADAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + + ++ + + A GA E +PYI ++NL ++++ S +G + Sbjct: 125 VHAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKSRDVWLVGTDDQATG 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +A ++GAEG+G+R T+ET + + M G +++LNVS A+AV LY + Sbjct: 185 SLHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLNVSVASAVCLYESVR 244 Query: 279 HF 280 Sbjct: 245 QR 246 >gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1] gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] Length = 258 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%) Query: 49 LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L KIF + ++A + V++VP +DK+ Sbjct: 9 DFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLDKL 68 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V ++ HQGL L P L+ + + L++LD + DPHN+G+ILR+A A Sbjct: 69 VDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATG 127 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGII +R + ++V+AK+++GA++++P +R++NL + + G+ G + Sbjct: 128 VDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN 187 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K L++G EGKG+ P + + M G +++LN A + LY N Sbjct: 188 -YTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 246 >gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] Length = 257 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 94/249 (37%), Positives = 141/249 (56%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++R + E ++L+G+H V AL NP R+ +L+ T+NA +L P + Sbjct: 10 KEQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFAGITP-EIA 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + +VHQG ALE PL L R +++LD V DPHN+GAILRS Sbjct: 69 DPRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +GL Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188 Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ +E ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 189 GEADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY ++ Sbjct: 249 IALYASKTR 257 >gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] Length = 251 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLALAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1] gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli AAC00-1] gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 250 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + I K+ G Sbjct: 7 VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLERAKEAGARLIEADALRIAKLAG 66 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + L L+ + LL+VLD V DPHN+GA LR A Sbjct: 67 SHG-HQGVAARVEAVAQVHSLDELLEQLEADGVEKPLLLVLDGVTDPHNLGACLRVADGA 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 126 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L + +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 RTLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 245 Query: 278 NHFA 281 Sbjct: 246 RQRG 249 >gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] Length = 262 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%) Query: 49 LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L KIF + ++A + V++VP +DK+ Sbjct: 13 DFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLDKL 72 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V ++ HQGL L P L+ + + L++LD + DPHN+G+ILR+A A Sbjct: 73 VDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATG 131 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGII +R + ++V+AK+++GA++++P +R++NL + + G+ G + Sbjct: 132 VDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN 191 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K L++G EGKG+ P + + M G +++LN A + LY N Sbjct: 192 -YTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 250 >gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 249 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+YG H +L + I ++ ++ + ++ P +D++ Sbjct: 7 TEFVYGHHASVESLKSTQE-INKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDEL 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ L A ++D + + ++LD + DPHN+G+ILR+A A Sbjct: 66 TD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+EH+P R++NL + ++++ G + Sbjct: 125 GVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y Sbjct: 184 DDYRRWDANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 251 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105 L G H V A L + + + R A + + + K+ Sbjct: 4 ILVGFHAVQARLRVDPDSLKSVYFDPSRRDRRMGDFLKQAEEILGERLHAADAERLHKLA 63 Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ + + ++ + L +VLD V DPHN GA LR A Sbjct: 64 GHDR-HQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ K S S +A ++K +SGA E IP I ++NL ++++M G +G +++ Sbjct: 123 GVDAVVIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + IA+++GAEG+G+R T+ET + + M G++++LNVS A+ V LY Sbjct: 183 KSIYDLDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEAL 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica subsp. indica ATCC 9039] Length = 293 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 101/272 (37%), Positives = 144/272 (52%), Gaps = 4/272 (1%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +K+ K K R HR Q N S P+ + L+G H V AL Sbjct: 17 AKRSETKPPRSKPWEGQGESRPHRPKSAPASQEKNPSPFRQSSPDVILLHGFHAVREALR 76 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + R L AT+ A +L D+ P V + + + +G + VHQG+ LE PL Sbjct: 77 SDQRTCLALYATEAAAEKLAPDSKAAGLAP-HIVTAEDLSRRLGSQTVHQGVLLEARPLE 135 Query: 123 SPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + S +++VLD + DPHN+GAI+R+A AF D I+TT+R++P+ VLAK+AS Sbjct: 136 PLDITEIPTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTERHAPALGGVLAKAAS 195 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G LEH+ + + NL AL+ + + +GL S ++ Q IAL+LG EG GLR Sbjct: 196 GGLEHVQIVPVVNLARALETLGRLNYLRVGLDSAAEADFTQLPLQRPIALVLGGEGTGLR 255 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 T+E +A L MPG IK+LNVSNA AV L Sbjct: 256 RLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287 >gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 251 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRS-ERDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] Length = 258 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 147/249 (59%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ +A + V Sbjct: 10 KEQEKKADVNQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIAKAGIEPEVV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 P+ + +VHQG LE PL TL V + +++LD V DPHN+GAILRS Sbjct: 69 DPRKFRPPLDPGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A ++ + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ +GL Sbjct: 129 AEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLD 188 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ +E + ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA Sbjct: 189 GEADMTVESALEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY +++H Sbjct: 249 IALYASRDH 257 >gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 15/246 (6%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQ 99 Q F+ G H V AAL + P K+F + +N ++ + A + VP Q Sbjct: 5 QENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLV-ISEVPKQ 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D++ + HQG+ L A T+D + ++LD++ DPHN+G+I+R Sbjct: 64 KLDRLSASQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K + +AV+AK+++GA+E +P R++NL ++++ G G Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 183 DIEG-TDYRRWDARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241 Query: 273 LYITQN 278 +Y N Sbjct: 242 IYQGFN 247 >gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] Length = 284 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 9/248 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ T+NAL RL DA + Sbjct: 36 KEQAKRQAAQETVWLFGLHAVRDALENPARQKLRLVVTRNALERLG-DAVAQSGMEPEIS 94 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL +L+ V +++LD V DPHN+GAIL Sbjct: 95 DPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRIVLLDRVTDPHNVGAIL 154 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ +R+S E+ LAK+ASGALE PY+R+ NL DA++ + G+ +G Sbjct: 155 RSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNLADAMEALKGMGYLVLG 214 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L ++ +E + ++ +AL++GAEG GLR KT+ET + + +LNVSNA Sbjct: 215 LDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELVKIDAAAGFGSLNVSNA 274 Query: 269 AAVALYIT 276 AAVALY Sbjct: 275 AAVALYAV 282 >gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 15/250 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPP 98 Q F+ G H AA+ + +I ++ A + D V+ VP Sbjct: 5 EQDQTAADFVIGRHPAMAAIKSDQ-QINKVFIQSGLQADVLNDIAKIAKKRNLIVQYVPK 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 Q +D++ A HQG+A+ A T+D + + ++LD++ DPHN+G+I+ Sbjct: 64 QKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGSIM 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ G G Sbjct: 123 RTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + Q + + LI+G EGKG+ P +++ M + M G +++LN S AA++ Sbjct: 183 TDMNG-TDYRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAASL 241 Query: 272 ALYI--TQNH 279 +Y T H Sbjct: 242 LIYQGYTSRH 251 >gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] Length = 266 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 11/257 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLP 88 KK++ + + LYG V L P K+F + + Sbjct: 6 KKIRGKQVNKVIDQEQNDEILYGRQVVLTILEEKKPINKVFIQKGLSGDKIQTILELVKQ 65 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141 + VP +D + + HQG+ + P+ +L+ ++LD + Sbjct: 66 RQLVFQEVPKAKLDDL-SQGQNHQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGI 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+G+I+RSA A GII KR + S + ++AK+++GALEHIP +R++NL + + Sbjct: 125 EDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQ 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + + IA+I+G EG+G+ K + A + M G ++ Sbjct: 185 LKTKGVWIFATDM-AGQDIRSWNSQGPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQ 243 Query: 262 ALNVSNAAAVALYITQN 278 +LN S AA++ +Y + Sbjct: 244 SLNASVAASIIMYEVAS 260 >gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] Length = 542 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 36/307 (11%) Query: 5 SKKKSEK----IFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------- 49 S ++E+ F ++ Y RR+ D ++ S +SR ++P+ Sbjct: 157 SGSQNERSGPGRFRDRNDRYGDRRRS-GDERRQPSQRSRSRFDEARPQRPDAAPEAAAAT 215 Query: 50 -----FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 ++G H AAL R I ++ T +L DA V+ V Sbjct: 216 PPADDLIWGRHATQAALE-AGRPIHRIWCTAEMRSASKFLQLLRDAK-ASGVLVEEVTWA 273 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 + +I G +VHQG+AL+TA + LD + LL+ LD V DPHN+GA++R Sbjct: 274 RLGQITG-GSVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVR 332 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A G++ +R S + AK A+GALEH+P R+ NL +L+K+ G++ +GL Sbjct: 333 SAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGL 392 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +++ L + + L+ G+E +GL T+ + + + GI +LN S A A+ Sbjct: 393 AAEGDVTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALC 452 Query: 273 LYITQNH 279 +Y Sbjct: 453 VYEVARR 459 >gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] Length = 254 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LLAT+N + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 SKILNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNTKENIDEIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 15/246 (6%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQ 99 Q F+ G H V AAL + P K+F + +N ++ + A + VP Q Sbjct: 5 QENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLV-ISEVPKQ 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D++ + HQG+ L A T+D + ++LD++ DPHN+G+I+R Sbjct: 64 KLDRLSAGQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K + +AV+AK+++GA+E +P R++NL ++++ G G Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 183 DIEG-TDYRRWDARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241 Query: 273 LYITQN 278 +Y N Sbjct: 242 IYQGFN 247 >gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383] gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383] Length = 247 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 267 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 26/287 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I+ ++ I +K ++ ++ + + F+ G+ V A Sbjct: 1 MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L +I ++L + L +PV +P + +I + QG+ Sbjct: 42 LK-EGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILA 99 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + D ++LD V DP N+G I+R+A A G+I +K + + Sbjct: 100 VLSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKV 159 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S G++ HIP + ++ + + +M G + + + IA+++G E Sbjct: 160 LRSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNE 219 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282 G+ + + A + + MPG ++LN S AA + +Y + + K Sbjct: 220 ANGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILRKNIGK 266 >gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] Length = 297 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 9/263 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARL 81 ++N+ K M++ N+ ++ T F+YG + V AL + ++ I ++ + K + Sbjct: 31 KKNNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHSAKYIEKIYFSSKKKKNQKG 90 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLL 135 D + + + I + + + +A+ DA+R L+ Sbjct: 91 IEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAYRDIDDALRLADIRGEKPLV 150 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DP N+GAI+R+A GII K + + +AK + GA+ IP I ++NL Sbjct: 151 LVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIPCIMVTNL 210 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL+ + GF ++ EQE +AL+LG EGKG+ + + Sbjct: 211 AAALKDLKQRGFWVYAADANGDSCFEQE-FGGSVALVLGNEGKGISKLCLNESDYKVSIP 269 Query: 256 MPGIIKALNVSNAAAVALYITQN 278 M +LNVS AA + +Y Sbjct: 270 MVNDFDSLNVSVAAGILMYEIVR 292 >gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630] gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3 [Clostridium difficile] gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] Length = 248 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A + + ++ V +D++ Sbjct: 7 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + ++LD + DPHN+G+I+R+A A G Sbjct: 67 S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G D + Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243 >gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 247 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103 E+ F+ G + V AL + R I +L + + + V+ VP + I++ Sbjct: 2 EHEFIIGRNPVLEALKSG-RDINKLWIAEGSQGGSMGQITQLAKRNGVLVQFVPKKKIEQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V + +HQG+A + A LD + S ++LD + DPHN+G+I+R+A A Sbjct: 61 MV--DGIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPHNLGSIMRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR S +A +AK+++GA+EH+P R++NL+ + ++ G +G + Sbjct: 119 VGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDRGVWIVGTDAKE 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 179 SDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNASVAASLLMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis 12822] gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis] gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS] Length = 245 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ + + + V V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLA- 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + LL++LD V DPHN+GA LR+A A Sbjct: 65 RGTRHQGVVAVAEERSLAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A + + A GA + +PY+ ++NL ++++ +G + + + Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +A ++GAEG+G+R T+ET + + M G +++LNVS A+AV LY + Sbjct: 185 QVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243 >gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes L99] Length = 251 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKDRKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-66c26] gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP 107932] gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-63q42] gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC 43255] gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-76w55] gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-97b34] gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-37x79] gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-32g58] Length = 245 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A + + ++ V +D++ Sbjct: 4 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + ++LD + DPHN+G+I+R+A A G Sbjct: 64 S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G D + Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240 >gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus EPS] gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus EPS] Length = 248 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTI--DKIVG 106 ++G H V + + + ++L AR+ V+ V ++ K+ G Sbjct: 6 VIFGFHAVGVRIKTAPKSVLEVLFDASRRDARMKQFIARAQEAGVRLVEADSLRIAKLAG 65 Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+A P L L+ LL+VLD V DPHN+GA LR A Sbjct: 66 SHG-HQGVAARVEPTAQIHSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL + ++ +G S D+ Sbjct: 125 AHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTMNELKERSIWCVGTSDDAPG 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 TIYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMR 244 Query: 279 HFA 281 Sbjct: 245 QRG 247 >gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1] Length = 246 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG + V AL P+ ++ +++ ++A AR D V+ +P +D++V Sbjct: 1 MLLYGRNPVLEAL--PAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLV 58 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+ E L T+D + + L+++LD V DP N GAI+RSA Sbjct: 59 GTTQ-HQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLG 117 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + Sbjct: 118 AHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQ 177 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + K AL++GAEG+G+R +E + + + G +++LN S AA + LY Sbjct: 178 DVTRTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLYEMTR 237 Query: 279 HFAK 282 K Sbjct: 238 SRGK 241 >gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E] gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii] Length = 248 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 8/252 (3%) Query: 33 MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 M FN+ +++ + ++YG H V +A+NNP R+I +L TK D + L Sbjct: 1 MTVFNKMQNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTR 57 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 + V + K++ K HQG+A + P+ S LD + + +++LD + D NIG Sbjct: 58 SYEIVNNYILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIG 116 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + GF Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG++ +K+ ++ +DKIAL+ GAE KG+R +ET +A + + +++LNV+NA Sbjct: 177 IIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236 Query: 269 AAVALYITQNHF 280 A++ + +F Sbjct: 237 ASIIFHSLHKYF 248 >gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 251 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + ++ + F+ G H A+L + K+F K+ ++ V Sbjct: 3 NENKQQPDFVIGRHPAMASLKSGHSINKVFIQEGLKSESIGQIIAKAKKQGLVIQRVSKS 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D + HQG+ L A +L+ V + +++LD + DPHN+G+ILR Sbjct: 63 KLDTLA-NGQNHQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A G+I KR + ++ +AK+++GA+E +P ++++NL + L+++ G G Sbjct: 122 TADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGT 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + LI+G EGKG+ T+E M + M G I++LN S AA + Sbjct: 182 DM-AGTDYRRWDATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLL 240 Query: 273 LY 274 +Y Sbjct: 241 IY 242 >gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] Length = 267 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 25/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I+ ++ I +K ++ ++ + + F+ G+ V A Sbjct: 1 MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L +I ++L + L +PV +P + +I + QG+ Sbjct: 42 LK-EGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILA 99 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + D ++LD V DP N+G I+R+A A G+I +K + + Sbjct: 100 VLSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKV 159 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S G++ HIP + ++ + + +M G + + + IA+++G E Sbjct: 160 LRSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNE 219 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + A + + MPG ++LN S AA + +Y Sbjct: 220 ANGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261 >gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] Length = 256 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 17/248 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 + + +G+H V L + + L K R+ L PV +P +D++ Sbjct: 2 SEYAFGLHAVEELLRRQPKSVSGLWVQKGRDDGRMQALLALAASTDTPVSRLPRVKLDEL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------------AVRNSQLLMVLDHVNDPHNIGAILR 152 V HQG+ + D L++VLD V DPHN+GA LR Sbjct: 62 VS--GRHQGVVAQLGENTEEQADLRWSEEQLARAVTYNPRALVLVLDGVTDPHNLGACLR 119 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A ++ K + +AV+ K A GA E +P +R++NL +L + + G G Sbjct: 120 SADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDALKAAGVWIYGT 179 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + L +AL++GAEG G+R T+E + L M G + +LNVS A V Sbjct: 180 AGEAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVC 239 Query: 273 LYITQNHF 280 L+ + Sbjct: 240 LFEIRRQR 247 >gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria AMMD] gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MC40-6] Length = 247 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22] Length = 242 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 138/245 (56%), Gaps = 7/245 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ + ++YG H V +A+NNP R+I +L TK D + L + V Sbjct: 2 QNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K++ K HQG+A + P+ S LD + + +++LD + D NIGAI+RSA Sbjct: 59 YILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + GF IG++ Sbjct: 118 AFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGY 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+ ++ +DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + Sbjct: 178 AKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHS 237 Query: 276 TQNHF 280 +F Sbjct: 238 LHKYF 242 >gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] Length = 268 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 14/251 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPP 98 S +L G H V AAL + ++ ++ + + + ++ P Sbjct: 4 RKSASSTQWLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPE 63 Query: 99 QTIDKIVGKE---AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + A HQG+ P L LD + L++LD V DPHN+G Sbjct: 64 KVFADRVRADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A LRSA A +I+ K + + K+ASGA E +P+I+++NL L + S Sbjct: 124 ACLRSAEAAGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIW 183 Query: 209 TIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + L + + +AL++G+EG+GLR TQE + + M +++LNVS Sbjct: 184 IVGAAGGGMVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSV 243 Query: 268 AAAVALYITQN 278 AAAV L+ + Sbjct: 244 AAAVCLFEFRR 254 >gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 254 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 11/251 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTV 96 + E + G + V A + KI+ L ++ R H + V Sbjct: 2 QENREQGTETFVIEGRNAVLEAFRSGRTIDKIYVLDGCQDGPVRTIVREAKKHGSLINFV 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 + + ++ + HQG+ A T+D + + L++LD++ DPHN+GA Sbjct: 62 TKERLSQL-SETGKHQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGA 120 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A G+I KR + +A +AK+++GAL + P +++NL ++++ G Sbjct: 121 IIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWF 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D ++ + I L++G EG+G+ +E +A + M G I +LN S AA Sbjct: 181 VCADMDGEQ-MYDLNLTGPIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAA 239 Query: 270 AVALYITQNHF 280 V Y Sbjct: 240 GVLAYEIVRQR 250 >gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] Length = 240 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L + I ++L + PVK + + +D+++ Sbjct: 4 YVYGKNVVKQLLQ-DGKPIHEVLIQEGIRDTALEGEIKKRRIPVKVLGRKKMDQLL--NG 60 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + L+ + S LL++LD + DPHN+GAILR+ DG+I Sbjct: 61 NHQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVI 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +AK ++GA++ + ++NL A++ + G+ +G ++ + + Sbjct: 121 IGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKKQGYWVVGTDFENSRDYREG 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 + + L++G+EG G+ ++ L M G + +LN S AA + LY Q H Sbjct: 181 QYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRH 238 >gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia cenocepacia MC0-3] Length = 247 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 247 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V + L+N S +I + +K+ +L D ++ + +D I Sbjct: 2 SELVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLD-I 60 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + A+HQG+ ++ P L L + + LL++LD V DPHN+GA LRSA A Sbjct: 61 QTQGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S + + K ASG++++IP+++++NL LQ + + IG S+ Sbjct: 121 GAHIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQ 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +A ++G+EG G+R TQ+ + + M G+ +LNVS A + L+ Sbjct: 181 RLIFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEAL 240 Query: 278 NHFAK 282 K Sbjct: 241 RQRWK 245 >gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 315 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 28/295 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++I+ K H AKL R+ R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ + T+N RL + P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATTLYIVAGTRN-DKRLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P +D + + ++LD++ DP N+GA++RS AF DG+I +R S Sbjct: 141 IPPYKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +AV ++++G +P R +N+T +Q+ G+Q +GL + + L+ D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +++G+EGKG+ +E + + M +++LN S AA L + Q A+ Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315 >gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240355] Length = 234 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 9/226 (3%) Query: 63 NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I +L + +A R + V ++ I K A HQG+A Sbjct: 3 QNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SKGARHQGVAGFID 61 Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 62 ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++K A GA E +PYI ++NL L+++ +G IG L D A ++G Sbjct: 122 TVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMG 181 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] Length = 547 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRR-NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 S+ ++ A+ R + + ++ R ++P + ++G H AAL Sbjct: 135 SRPDGDRPRFQPGRPPARPSRFSEPEAPGPEASGSSERFGAEPADDLVWGRHPAQAALE- 193 Query: 64 PSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I ++ T +L DA + V+ V + +I G AVHQG+ L+ Sbjct: 194 GDRPIHRIWCTPELRFAPRFLQLLRDAK-ANGVLVEEVTWARLGQISG-GAVHQGIVLQA 251 Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + L + + LLM +D + DPHN+GAI+RSA A G++ +R + Sbjct: 252 AAAETLDLASLIDGCSTIGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHGLVLPQRRNAG 311 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK A+GALEH+P R+ NL +++++ G++ +GL+ + L + + + + Sbjct: 312 LTGSVAKVAAGALEHLPVARVVNLNRSIEQLKDAGYRVVGLAEEGNVSLMEADLDGPLVV 371 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G+E +GL T++ + + + G +LN S A A+ LY Sbjct: 372 VTGSEAQGLSMLTRKHCDQLIRIPLRGATPSLNASVATALLLYEIARR 419 >gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 394 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 14/257 (5%) Query: 35 SFNQKSRHTSQ--PENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90 N+K + + + G + V AL P KIF L ++ R Sbjct: 138 DLNKKKKQEKNMNHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTD 197 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 +K V + ++++ + HQG+ A T++ + ++LD + D Sbjct: 198 AILKFVDKERLNQLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIED 255 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A G+I K + + +AK+++GA+ + P ++++N+ + ++ Sbjct: 256 PHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELK 315 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G D + Q I L++G EG G+ +E ++ + M G I +L Sbjct: 316 ERGMWFACADMDGEVIYRQ-NLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSL 374 Query: 264 NVSNAAAVALYITQNHF 280 N S AA V + Sbjct: 375 NASVAAGVLAFEVVRQR 391 >gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503] gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503] Length = 243 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 94/243 (38%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 R E L+LYG HTV AAL NP R +LLAT+NA L W + V P Sbjct: 2 SQRRAPPIEPLWLYGRHTVEAALGNPQRHQVKLLATRNA---LGWLKERGRTITIDPVTP 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155 + IDK + AVHQGLA+ PL SP+L + + L+VLD + DP NIGA+ R A Sbjct: 59 KDIDKALPPGAVHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAA 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS +I R +P LAK+A+GA+E +P+I + N++ AL+ + GL+ + Sbjct: 119 AFSAKAVIAQDRRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGE 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L AL+LGAEGKGLRP + + + + I++LNV+ AAA++LY Sbjct: 179 GALSLRDTAPTRTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYH 238 Query: 276 TQN 278 Sbjct: 239 LGR 241 >gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] Length = 272 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 12/272 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TK 75 +H + KK S K + + E+LF+ G ++V ALN +I ++ + Sbjct: 6 KTHKNSNKTQ--TVKKQFSQKNKRKTLKKSEDLFICGRNSVKEALN--ENQIKKIFIKSG 61 Query: 76 NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 N RL + P++ + +DK+ QG+ P L+ V Sbjct: 62 NNDQRLKDIVKIAQNKNIPIQIEEQEILDKMSDGVRN-QGIVASMKPFEYSDLEEVLLKA 120 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 121 KEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPV 180 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ Sbjct: 181 CEIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCD 240 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G + +LNVS AAA+ +Y + Sbjct: 241 FLVRIPMKGKVSSLNVSVAAALLIYESVKQRG 272 >gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] Length = 270 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 16/268 (5%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79 ++R N R ++ Q + HT L + G + V A + P K+F L ++ Sbjct: 5 RMRENSRYHEAENHTGQDNSHT-----LVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPV 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 R H + V + + +I + HQG+ A T+D + Sbjct: 60 RTIVREAKKHDALLNFVTKERLSQI-SETGKHQGVVAYAAAYEYSTVDDMLALAEERGED 118 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P ++ Sbjct: 119 PFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKV 178 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL ++++ G + D + P+ I L++G EG+G+ +E +A Sbjct: 179 TNLVKTMEELKEKGLWFVCADMDGE-PMYHLNLTGPIGLVIGNEGEGVSRLVKENCDFVA 237 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G I +LN S AA V Y Sbjct: 238 GIPMKGQINSLNASVAAGVLAYEIVRQR 265 >gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum SL003B-26A1] gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum SL003B-26A1] Length = 265 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 105/236 (44%), Positives = 155/236 (65%), Gaps = 1/236 (0%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + LYG+HTV AA NP R+ +L AT+NAL RL+ P PV+ + P+ +D++V Sbjct: 30 EGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIRP-DVPVEILAPRALDRMV 88 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 ++AVHQG+ LE L + +D ++ ++L++ LD V DPHN+GAILRSAVA + D ++TT Sbjct: 89 TRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNVGAILRSAVALAADAVVTT 148 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R++P E VLAK+ASGAL+ I ++R+ N+ L +M GF + L SD + LEQ Sbjct: 149 ERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGFFRVALDSDGEASLEQTPF 208 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 DK L+LG+EGKG+R + +A L MPG I++LNVSNAA +ALY+ + + Sbjct: 209 GDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSNAAVLALYVARQRMS 264 >gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis MSMB43] Length = 247 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY + Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRR 244 Query: 281 AK 282 AK Sbjct: 245 AK 246 >gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] Length = 272 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 12/272 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TK 75 +H + KK S K + + E+LF+ G ++V ALN +I ++ + Sbjct: 6 KTHKNSNKTQ--TVKKQFSQKNKRKTLKRSEDLFICGRNSVKEALN--ENQIKKIFIKSG 61 Query: 76 NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129 N RL + PV+ + +DK+ QG+ P L+ V Sbjct: 62 NNDQRLKDIVKIAQNKNIPVEIEEQEILDKMSDGVRN-QGIVASMKPFEYSDLEEVLSKA 120 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 121 KEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPV 180 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ Sbjct: 181 CEIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCD 240 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G + +LNVS AAA+ +Y + Sbjct: 241 FLVRIPMKGKVSSLNVSVAAALLIYESVKQRG 272 >gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU144] gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU028] Length = 255 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 8 EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 67 LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPHNLGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 125 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 185 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 244 Query: 277 QN 278 Sbjct: 245 YR 246 >gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] Length = 315 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 28/295 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++I+ K H AKL R+ R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ + T+N RL + P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATTLYIVAGTRN-DKRLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P +D + + ++LD++ DP N+GA++RS AF DG+I +R S Sbjct: 141 IPPYKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +AV ++++G +P R +N+T +Q+ G+Q IGL + + L+ D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +++G+EGKG+ +E + + M +++LN S AA L + Q A+ Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315 >gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] Length = 247 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R + A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] Length = 536 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 38/310 (12%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ------------------- 45 S+ ++ +D ++ R + R ++ S ++SR + Sbjct: 112 SETDRKEARRFRDERPSRRRSDERLGRR-PSLGERSRPADRLLSSKRLDPSTSDRVPEAE 170 Query: 46 -----PENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPH--PFPVKTV 96 + L+G H AAL R I ++ T + + R V+ V Sbjct: 171 AFGPAAADDLLWGRHASQAALE-AGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEV 229 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 + ++ G AVHQG+ L+TA + L ++ S LL+ LD + DPHN+GA Sbjct: 230 TWARLGQLTG-GAVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGA 288 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA A G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ Sbjct: 289 IIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRV 348 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 IGL+ + L + + ++ G+E +G+ T+ + + + G+ +LN S A Sbjct: 349 IGLAEEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVAT 408 Query: 270 AVALYITQNH 279 A+ LY Sbjct: 409 AMCLYEVARR 418 >gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] Length = 245 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G + V A + K++ L K+ ++ V + +D++ Sbjct: 5 EFTIEGRNAVIEAFRSGKTIDKLYVLDGCKDGPVMTIIREAKKTDTIIRYVDREILDRL- 63 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 K HQG+ A ++ + N + +LD + DPHN+GAI+R+A Sbjct: 64 SKTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPHNLGAIIRTANLAG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + +A +AK+++GAL + P +++NL+ ++++ G + + Sbjct: 124 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKEGLWFVCADMGGET 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 184 -MYNLNLTGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVR 242 Query: 279 HF 280 Sbjct: 243 QR 244 >gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] Length = 249 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIV 105 +YGV+ + AL + + +++ + + PV+ +D + Sbjct: 2 EVIYGVNPLREALISGGEGVTRIVVARGRSESSISEIRTLAKQRGIPVEIRERSFLDDLA 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158 G A HQG+ LDAV + L+++LD + DPHN+GA++RSA F Sbjct: 62 G-HASHQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILDPHNLGALIRSAHCFG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +GII +R + S + + K+++GA HIP R++NL AL ++ + GF G + + + Sbjct: 121 ANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELKTKGFWIFGADARADQ 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + L++G E KGLRP ++ + + M G I +LNVS + + L+ + Sbjct: 181 SVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIRR 240 >gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] Length = 297 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 27/291 (9%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENL-----FLYGVHTVSAAL 61 ++ + + ++ K+ +K R + PE+ L+G + V AL Sbjct: 9 KKQERTDKQPSQENKFNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGRNAVIEAL 68 Query: 62 NNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + R+I ++L K A V +D++ G+E HQG+ Sbjct: 69 KS-EREIDKILIQKGEKEGSVIKIISAAKAKGIVTLEVEKSKLDELTGREK-HQGVVAYV 126 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A +++ + +++L+++ DPHN+GAI+R+A GII KR + Sbjct: 127 AAHEYVSVEEILEDAAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVG 186 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK+++GALEH ++SN+ ++ + G D K L +E I + Sbjct: 187 LTGTVAKASAGALEHTKVAKVSNIAQTIKDLQQKGLWIACADMDGKV-LFEENLTGPIGI 245 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280 ++G+EG+G+ T++T + + M G + +LN S AA++ +Y Q +F Sbjct: 246 VVGSEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRNF 296 >gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 318 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 15/264 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDA--NL 87 + + ++++ + G + V L+ PS ++ L T N RL Sbjct: 56 ERRDSGRQAKKDPDNTPELVVGRNPVIECLHAHVPSTALYVALGTGN-DDRLSEAVHTAA 114 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140 PV V +D++ G +HQG+ L+ P D + L++VLD+ Sbjct: 115 ERGIPVLEVARDEMDRMTG-NGMHQGIGLQVPPYKYAADDDLIERAKDSGRPGLIVVLDN 173 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+GA++RS AF G++ +R S S +AV ++++G +P R +NL +L+ Sbjct: 174 ITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLK 233 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 K G+Q +GL + L+ D + +++G+EGKGL ET + + M + Sbjct: 234 KFQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTV 293 Query: 261 KALNVSNAAAVAL--YITQNHFAK 282 ++LN S AA V L + Q + Sbjct: 294 ESLNASVAAGVVLSEFARQRRVRQ 317 >gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc gasicomitatum LMG 18811] Length = 252 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 + F+YG + AL +++I ++ ++ + ++ P +D+ Sbjct: 9 QTEFVYGHYASVEALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKKGLVIQQAPKSKLDE 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L A T+D + ++LD + DPHN+G+ILR+A A Sbjct: 68 LTD-GGNHQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR + +A +AK ++GA+EH+P R++NL + + ++ G G + Sbjct: 127 AGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDM-A 185 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ALI+G EGKG+ P ++ SM + M G +++LN S AA++ +Y Sbjct: 186 GEDYRRWDAKGATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMY 243 >gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum reducens MI-1] Length = 243 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKI 104 N + G + V AL R I +++ K A L L P++ V +DK+ Sbjct: 2 NEMIAGRNPVREALR-AGRPINKVVMAKGAGTGPLAEIVKLAKQNNIPLQMVERSHLDKM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ A L+ + +++LD +NDPHN+GAI+R+A A Sbjct: 61 -NPGVPHQGVIAYAAAKQYVELEELLEIARAKGQDPFIIMLDEINDPHNLGAIMRTADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I +R S + ++ +AK+++GA+E++P R++NL ++++ G +G D Sbjct: 120 GAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVTNLDQTIRQLKDEGLWVVGADMDGS 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G EGKGL +E + L M G + +LN S AAA+ +Y Sbjct: 180 EIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGRVGSLNASVAAALLVYEVV 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca] Length = 307 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 15/256 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDAN 86 + + S T PE +YG HTV AAL N R + ++ + L +A Sbjct: 38 RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139 V Q +D+I + A HQG+ + P L + + +L+ +D Sbjct: 97 AKGAI-VDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVD 154 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAI+R+A A G+I +R + +A + K A+GALE P R+ NL Sbjct: 155 GITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTF 214 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ S GF G + +PL + + I L++G+EG+GL E + + + G+ Sbjct: 215 TELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGV 274 Query: 260 IKALNVSNAAAVALYI 275 +LNVS A +ALY Sbjct: 275 TPSLNVSVATGMALYE 290 >gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 247 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL KIF ++ + + V+ VP + +D++ Sbjct: 3 QDFIIGKNPVLEALRAERDINKIFIAEGSQGGQMQQVIGLAKTNGVLVQFVPKKKLDQMA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E +HQG+ A +D + + ++LD + DPHN+G+I+R+A A Sbjct: 63 --EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPHNLGSIMRTADAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + +A +AK+++GA+EHIP R++NL + ++ G G + + Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEKGVWIAGTDAKGSE 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + L++G+EGKG+ ++ + HL M G + +LN S AAA+ +Y Sbjct: 181 DYRRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYR 240 >gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 249 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L +KN+ + V+ V Q +D Sbjct: 3 KKNQWIVGINAVVSSIENDAEHVCEVLVEAGSKNSRLLDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L K+AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 AETSLYALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 312 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 15/256 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDAN 86 + + S T PE +YG HTV AAL N R + ++ + L +A Sbjct: 38 RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139 V Q +D+I + A HQG+ + P L + + +L+ +D Sbjct: 97 AKGAI-VDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVD 154 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAI+R+A A G+I +R + +A + K A+GALE P R+ NL Sbjct: 155 GITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTF 214 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ S GF G + +PL + + I L++G+EG+GL E + + + G+ Sbjct: 215 TELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGV 274 Query: 260 IKALNVSNAAAVALYI 275 +LNVS A +ALY Sbjct: 275 TPSLNVSVATGMALYE 290 >gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. CB0205] Length = 406 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 13/271 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL- 78 +++ R + + R + P + ++G H AAL + R + ++ T Sbjct: 43 FSRDRDQAKPIAVEVPVGEAERFNAYPADDLIWGRHAAQAALESG-RPVHRIWCTPEMRF 101 Query: 79 -ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DA 128 R V+ V + ++ AVHQG+ ++ A + L Sbjct: 102 QPRFLQLLREAKSGGVLVEEVTWSRLGQLT-NGAVHQGIVMQAAAADTLDLGTLIDGCRD 160 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LLM LD + DPHN+GAI+RSA A G++ +R S + +AK A+GALEH+P Sbjct: 161 LGEPPLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLP 220 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ NL AL + + G++ IGL+ + L + + + ++ G+EG GL T++ Sbjct: 221 VARVVNLNRALDSLKNEGYRVIGLAGEGSVALSEADLDGPLVVVTGSEGDGLSMLTRKHC 280 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G +LN S A A+ LY Sbjct: 281 DQLVRIPIRGATPSLNASVATAMVLYEVARR 311 >gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 315 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 28/295 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ K H AKL R R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVVECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ + T+N ARL + P+ + +D++ G +HQG+ L+ Sbjct: 83 HAKVPATSLYIVQGTRN-DARLSEAVAIANSRNIPILEIQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + ++LD++ DP N+GA++RS AF G+I +R S Sbjct: 141 IPPYKYADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229 S +AV ++++G +P R++N+T +Q+ G+Q +GL + + L+ D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +++G+EGKG+ +E + + M +++LN S AA L + Q AK Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315 >gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] Length = 254 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 12/237 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVG 106 +YG + V+ AL + I + K A A VK + + G Sbjct: 18 EEIIYGKNAVTEALK-AEKPIDTVFVLKGAQGMNQIIALAKKQGIVVKDAGEDKLKALCG 76 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + H G+A + + T++ + +++ D + DPHN+GAI+R+A A Sbjct: 77 DK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGA 134 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I KR S + + + K+++GA I R+SNL D ++ + G G +D P Sbjct: 135 DGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG-TP 193 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 194 IDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEA 250 >gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 11/237 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +G H V A L++ + QL + R + H PV T P ++ + +E Sbjct: 28 WGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAARHGIPVHTEIPADLN--LEEE 85 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ PTL+ + + +QLL+ LD + DP N+GAI+R+A AF DG+ Sbjct: 86 ISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGL 145 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + + K+A+G L + R++NL+ +L ++ GF G + + L Q Sbjct: 146 LIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQLKKHGFWIYGAGGQAPQQLHQ 205 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + I L++G E KGLRP + + M +++LNV+ A V L + Sbjct: 206 TSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVILSEIRRQ 262 >gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] Length = 247 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103 + ++G+H V + L ++I +L K+ R+ + H V V Q ++ Sbjct: 2 KTDVIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAEAHGVRVSLVNRQQLES 61 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G + HQG+ P L + + L++VLD V DPHN+GA +RSA A Sbjct: 62 AAG-DGNHQGVIAYAKPGKALDEKGLLDLIAQMEEDPLILVLDGVTDPHNLGACMRSADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S + K A GA E +P + ++NL AL K+ G G + ++ Sbjct: 121 AGVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 181 DADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEV 240 Query: 277 QNHFA 281 Sbjct: 241 LRQRN 245 >gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] Length = 258 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 144/249 (57%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ + V Sbjct: 10 KEQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIARA-GIEPEVV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 P+ + +VHQG LE PL L V + +++LD V DPHN+GAILRS Sbjct: 69 DPRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A ++ + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ +GL Sbjct: 129 AEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLD 188 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ +E + ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA Sbjct: 189 GEADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY +++H Sbjct: 249 IALYASRDH 257 >gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] Length = 249 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKI--VG 106 LYG H V+A L + + + ++L + R D V+ + ++ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADE-TRLWGLA 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L L+ LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 65 HTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG + D+ L Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + ++ M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] Length = 322 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 12/254 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTV 96 SR + + G + V AL P+R ++ + R P+ V Sbjct: 66 SRPFLEEGAEIIAGRNPVVEALRADIPARVLYVAYRIDTDDRVREAIKIAADRDIPMVEV 125 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149 +D++ G AVHQG+ LE P D + + L++ LD V DP N+GA Sbjct: 126 SRDRLDQLTG-GAVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTDPRNLGA 184 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA AF GI+ R S ++ K+++G L +P R SNLT L+ G Sbjct: 185 IARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYRKEGLFV 244 Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL D+K+ + + + + + L++G+EGKGL +ET +A + M +++LN A Sbjct: 245 VGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVESLNAGVA 304 Query: 269 AAVALYITQNHFAK 282 A +ALY + Sbjct: 305 AGIALYEIARRRRQ 318 >gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 250 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + K+F + A + V+TVP +D++ Sbjct: 6 DFVFGRHAGLDYLKTHNSDQINKVFLQHGVQEDFANQVYAITKKKRLVVQTVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQGL L + LD + L++LD + DPHN+G+ILRSA A Sbjct: 66 V-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + N K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 VDYREWNANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAF 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] Length = 244 Score = 241 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +L G + V AL + L K L + V+ V + I+K Sbjct: 3 YLVGRNPVMEALE-MDMGVTNLYIQKGELKGFIKKIEKKAYDMGIKVEYVDKKYIEKFAE 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ + +D + L++LD + DPHN+G+I+R+A C Sbjct: 62 NTA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPHNLGSIIRTAEVAGC 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + +A K+++GA+ +I R++N+T + + G ++ + Sbjct: 121 HGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQT 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q I L++G EGKG+ +E + + M G ++LN SNAA++ +Y Sbjct: 181 HTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQ 240 Query: 280 F 280 Sbjct: 241 R 241 >gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus maricopensis DSM 21211] Length = 242 Score = 241 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG + V AL + ++ ++L + + V+ P +D++ G Sbjct: 1 MLLYGRNPVLEALRDG--RVTEVLVARGVEDAFVRELK-ATDVRVRFAPRIELDQLAGTT 57 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ E L T+D + + L+++LD + DP N GAI+RSA G Sbjct: 58 A-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPRNFGAIIRSAEVLGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + L Sbjct: 117 VIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTDGVWVYGAAGEAARDLR 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K+AL++GAEG+GLR +E + + + G +++LN S AA++ LY Sbjct: 177 ELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQA 231 >gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] Length = 247 Score = 241 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI--VG 106 LYG H V+A + + + + + R+ V+ + ++ + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADE-TRLWGLA 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 65 RTDRHQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL+LGAEG+G+R T+ET + H+ M G +++LNVS A+ V L+ A Sbjct: 185 DTELDGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 247 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R + A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY + Sbjct: 185 DTRLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRR 244 Query: 281 AK 282 AK Sbjct: 245 AK 246 >gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 244 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +L G + V AL + + K L + V+ V + I+K Sbjct: 3 YLVGRNPVMEALE-MDMGVTNIYIQKGELKGFIKKIEKKAYDMGIRVEYVDKKYIEKFAE 61 Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ + ++D + L++LD + DPHN+G+I+R+A C Sbjct: 62 NTA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPHNLGSIIRTAEVAGC 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + +A K+++GA+ +I R++N+T + + G ++ + Sbjct: 121 HGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQT 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q I L++G EGKG+ +E + + M G ++LN SNAA++ +Y Sbjct: 181 HTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQ 240 Query: 280 F 280 Sbjct: 241 R 241 >gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis TXDOH] Length = 247 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244 >gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes serotype 4b str. F2365] Length = 251 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD + ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQN 278 LY Sbjct: 239 LYEVYR 244 >gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 247 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI--DKIVG 106 L+G H V+ + + +L AR+ V+ + + + G Sbjct: 7 ILFGFHAVTVRVKTAPGSVVELYIDGTRRDARMRQFIERAKEAGVRLIESDELRLQALCG 66 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + L LD V LL+VLD V DPHN+GA LR A Sbjct: 67 THR-HQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG + D+ + L Sbjct: 126 VIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LGAEG+G+R T++T + L M G +++LNVS A+ + LY Sbjct: 186 AADLRQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQRG 245 >gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 10/241 (4%) Query: 51 LYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G V L +P ++ + A PV+ V P I++ + Sbjct: 51 VEGRRPVLELLGSAHPVHRVLVARGRRGAAIAELEQRARARGVPVEEVDPVEIERRAQTD 110 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ APL L + LL++ + DPHN+GA+ R+A A G Sbjct: 111 -THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHG 169 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + S A + KS++GAL H+P ++NL +++++ G + + +P + Sbjct: 170 AVVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLKERGVWVVAADPEGAEPYD 229 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A++LG+EG+G+ P + + M G + +LNVS AA V L+ Sbjct: 230 RWDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQRR 289 Query: 282 K 282 + Sbjct: 290 Q 290 >gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51] gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] Length = 246 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 13/244 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 + +YG + V L + + +LL A D P + V +D++ Sbjct: 3 DEIVYGRNAVWELLQSGK-PVNKLLLQGEGTAGRFQDIVSHARAQKIPFQFVDKAALDRL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K A HQG+ AP +D + ++VLD V DPHN+GA++R+A A Sbjct: 62 TEK-AKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVEDPHNLGALIRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S S +A +AK+++GA+EH+ R+ NL L+ + G G ++ Sbjct: 121 GVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAEGT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ ++ +++G+EGKGL +ET + L M G I +LN S A ++ +Y Sbjct: 181 EVYRSDLTGARV-IVIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVL 239 Query: 278 NHFA 281 Sbjct: 240 RQRG 243 >gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis Bt4] gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis E264] Length = 247 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD V LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244 >gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a] Length = 254 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVG 106 +YG + V+ AL + I + K+A A VK + + G Sbjct: 18 EEIIYGKNAVTEALK-AEKPIDTVFVLKSAQGMNQIIALAKKQGIVVKDAGEDKLKALCG 76 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + H G+A + + T++ + +++ D + DPHN+GAI+R+A A Sbjct: 77 DK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGA 134 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I KR S + + + K+++GA I R+SNL D ++ + G G +D P Sbjct: 135 DGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG-TP 193 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 194 IDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEA 250 >gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis RP62A] Length = 249 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 61 LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 119 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU045] Length = 255 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 8 EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 67 LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 125 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 185 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 244 Query: 277 QN 278 Sbjct: 245 YR 246 >gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] Length = 247 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI--VG 106 LYG H V+A + + + + + R+ V+ + ++ + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADE-TRLWGLA 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 65 RTERHQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +AL++GAEG+G+R T+ET + ++ M G +++LNVS A+ V L+ A Sbjct: 185 ETELDGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240149] Length = 234 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 9/226 (3%) Query: 63 NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I +L + + R + V ++ I K A HQG+ Sbjct: 3 QNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SKGARHQGVVGFID 61 Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 62 ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++K ASGA E +PYI ++NL L+++ +G IG L D A ++G Sbjct: 122 TVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMG 181 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 251 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%) Query: 48 NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+YG ++ L N K+F + A + V+ P +D+ Sbjct: 6 DEFVYGRYSGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 +V HQGL L AP LD + + +++LD + DPHN+G+ILR+ A Sbjct: 66 MV-NHENHQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKRGYWIFGTAMKG 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] Length = 251 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + V+ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + LD + + L++LD + DPHN+G+ILRSA A Sbjct: 66 VA-GGNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] Length = 256 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ T+ A V+ P +D++ Sbjct: 3 VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRGAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ + LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ L++D ++ Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + AL+LG+EG+G+RP + T A + M G + +L+VS +AAVALY Sbjct: 182 PLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] Length = 259 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L+L+G+H V AL NP R +L+ TKNAL RL DA + P+ + Sbjct: 21 TLWLFGLHAVRDALENPRRDKRRLVVTKNALDRLG-DAVGQAGLEPEISDPRKFAAPLDP 79 Query: 108 EAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +VHQG ALE PL +L V +++LD V+DPHN+GAILRSA F + Sbjct: 80 GSVHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAV 139 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I +R+S E+ LAK+ASGALE PY+R++NL A++++ G+ GL+ +++ + Sbjct: 140 IGVQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRP 199 Query: 223 EI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY +++ Sbjct: 200 ALDGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASRS 258 >gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Puerto Rico] gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Virginia] Length = 251 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 13/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106 +++ G H AAL NP+R +L T L + A + V V + I KI+G Sbjct: 1 MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 60 Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+AL L +R + +++LD V D +N+GAI+RSA Sbjct: 61 HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F D +I + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + Sbjct: 121 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY Sbjct: 181 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYS 240 Query: 276 TQNHF 280 + Sbjct: 241 SYLQL 245 >gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL L + + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] Length = 260 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 144/249 (57%), Gaps = 9/249 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R +L+ TKNA +L D P + Sbjct: 10 KERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIGASGMEP-EMS 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE L L+ V + +++LD V DPHN+GA+L Sbjct: 69 DPRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ R++ E+ LAK+ASGALE PY+R+ NL DA++ + G+ +G Sbjct: 129 RSAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLG 188 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L +++ + + ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNA Sbjct: 189 LDGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNA 248 Query: 269 AAVALYITQ 277 AAVALY ++ Sbjct: 249 AAVALYASR 257 >gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 245 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L ++ ++ K+ RL ++ + +D Sbjct: 3 NDMIFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQQAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P L LDA+ + LL++LD V DPHN+GA LR+A A Sbjct: 63 A-KGASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 AAAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 316 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 28/294 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ K H AKL R R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ T+N RL ++ P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATTLYIAAGTRN-DKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P ++ + + ++LD++ DP N+GA++RS AF DG+I +R S Sbjct: 141 IPPYKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI 229 S +AV ++++G +P R +N+T +++ G+Q +GL + L+ E D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 +++G+EGKG+ ET + + M G +++LN S AA L + Q A Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRVA 314 >gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus selenitireducens MLS10] Length = 255 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQT 100 + ++YG + V L + + ++ ++++ V+TVP + Sbjct: 2 TDANQDYVYGKNPVIEVLRSGQ-TVHKVWIAEDSMKGQMNQVLGLCKKMNVQVQTVPRKR 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQG+ + A +D + +VLD + DPHN+G+ILR+ Sbjct: 61 LDQMADGIA-HQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPHNLGSILRT 119 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I KR S ++ +AK+++GA+ H+P R++NL + ++ G +G Sbjct: 120 ADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQGLWFVGTD 179 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + E + +AL++G+EGKG+ +E + + + G + +LN S AA++ + Sbjct: 180 AKGDVSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNASVAASLLM 239 Query: 274 YITQN 278 Y Sbjct: 240 YEVLR 244 >gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] Length = 257 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 117/274 (42%), Gaps = 21/274 (7%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + + I S+++ + +KK+Q+ ++ + F+ G H V AL Sbjct: 3 RMKNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--V 49 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 I +L+ + DW + VP + I K++ + QG+ + Sbjct: 50 ITELIVSDQTDLPKDWTVT---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---E 102 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+ Sbjct: 103 IALTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHL 162 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 163 PIVK-GNLEEWVDKLKEKNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEVLAK 221 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 222 CDQNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 255 >gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 519 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%) Query: 25 RNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 R RD + + N ++ +YG H V AAL +R + ++ T Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275 Query: 81 -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 DA V VP + I ++ AVHQG+A + AP L + Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++V D + DPHN+GAI+R+A A G++ +R + +A +AK A+GALE P R+ Sbjct: 335 PVIVVADGITDPHNLGAIIRTAGALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL+++ GF G + ++K+ + + + + L++G+E +GL T+E + Sbjct: 395 VNLNPALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LN S AA + LY + Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQRQQ 484 >gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 249 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 13/242 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++L + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 61 LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G + + Sbjct: 119 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDSGFWIAGTEASN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QN 278 Sbjct: 239 YR 240 >gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] Length = 252 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 12/249 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + EN+ + G + V A + P K+F L ++ R H V+ V Sbjct: 5 KDKHGNENM-IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTLVQFVDK 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + + ++ + HQG+ TA ++ + L++LD + DPHN+GAI+ Sbjct: 64 ERLTQL-SQTGRHQGVIAYTAAYEYAQVEDMLALAKERGEDPFLILLDDIEDPHNLGAII 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR + +A +AK+++GA+ + P +++NLT ++++ G + Sbjct: 123 RTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTKTMKELKEKGLWFVC 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + I L++G EG+G+ +ET +A + M G I +LN S A V Sbjct: 183 ADMGGE-SMYKLNLTGPIGLVIGNEGEGVSRLVKETCDFVASIPMKGDIDSLNASVATGV 241 Query: 272 ALYITQNHF 280 Y Sbjct: 242 LAYEIVRQR 250 >gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314] gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 313 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 27/294 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ +H KL R R +K RH + + + G + V L Sbjct: 34 KGPTPKAEDRVYHA--AHKRKLERQRR---------EKGRHQRE-QTELVVGRNPVLECL 81 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + L + A RL L PV V +D++ G +HQG+ L Sbjct: 82 -HARVPSTALYVAEGAANDERLSESVRLAADRSIPVLEVNKLELDRMTG-NGMHQGIGLA 139 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + ++LD++ DP N+GA++RS AF +G+I +R S Sbjct: 140 IPPFEYADIHDLLADAAQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S +AV ++++G +P + +N+T +++ G+Q +GL + L+ D + Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVV 259 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +++G+EGKG+ +E ++ + +++LN S AA V L + Q A+ Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313 >gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 15/248 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTID 102 +N ++GV V A+ I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKE-IDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ +P+ P L + LL++LD V D N GAI R+ Sbjct: 62 RITKK--NHQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R +NLT+ ++ + GF+ + + Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYE 239 Query: 276 T--QNHFA 281 Q FA Sbjct: 240 AVKQRGFA 247 >gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 265 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 2/256 (0%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + R K +++ Q + + + G+ ALN+ + L+ + + L R Sbjct: 7 SKRQIKMIRALAQLKNYRKRHGLFLVEGLRATEEALNSDYL-VEFLVVSDDFLERHREKI 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V VP + D + EA QG+ ++ L++ LD + DP Sbjct: 66 KEYENIKVYEVPRKVYDTLSDTEA-PQGIMAVVRMKNHELTSIYEDNFLIVALDGIKDPG 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG I+R+A A GI+ K + + +S G++ H+P I +L L ++ Sbjct: 125 NIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQK 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + ++K + L+ G+E +G+ P+ + +T + + MPG ++LNV Sbjct: 185 RAKIVVTHLGAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLNV 244 Query: 266 SNAAAVALYITQNHFA 281 + A + L+ Sbjct: 245 AVAGGIVLFEAVRQRN 260 >gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 13/252 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVP 97 + + G + V L P+ ++ + T+N RL L + VP Sbjct: 75 RKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTEN-DERLTESVKLAADTGISILEVP 133 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAI 150 +D++ +HQGLAL+ P D + LL+ LD+++DP N+GA+ Sbjct: 134 RTDLDRMSS-NGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLGAV 192 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RS AF G++ +R S S +AV ++++GA +P R +NLT L+ + G Q + Sbjct: 193 IRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQIV 252 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL + L++ D +++G+EGKGL +ET S+ + M G +++LN S AA Sbjct: 253 GLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVESLNASVAAG 312 Query: 271 VALYITQNHFAK 282 V L + Sbjct: 313 VVLSEIARQRRR 324 >gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] Length = 259 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 12/259 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--H 89 K N ++ E + G + V AL I + A + L Sbjct: 2 KENKINNNKTTDNKREEELILGRNPVIEALKADKL-IDMIFVNPEAKGSISLILKLAKER 60 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVN 142 PVK V +D + G A HQG+ A ++ + N +++ D + Sbjct: 61 DIPVKQVREIKLDSMAG-GAAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIE 119 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A A GII KR S S + + K+++GA +P R+ NL A+ + Sbjct: 120 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNLAAAVDDL 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G + + I L++G+EG G+ +E + L M G I + Sbjct: 180 KKQGIWIYGTDG-AGQNYSGADLRGPIGLVVGSEGFGMGRLMKEKCDMLLSLPMAGKITS 238 Query: 263 LNVSNAAAVALYITQNHFA 281 LN S AA + +Y Sbjct: 239 LNASVAAGIFMYEIVRQRN 257 >gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis EO147] gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis C6786] Length = 247 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ + R D + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQRG 244 >gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] Length = 245 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ R H ++ V + +D++ Sbjct: 4 EELTIEGRNAVIEAFRSGKTIDKLFVLDGCQDGPVRTIIREAKKHDTLLQFVTKERLDQM 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A +D + + L++LD + DPHN+GAI+R+A Sbjct: 64 -SETGSHQGVIAYAAAYEYAEVDDILKIAEEKGEAPFLILLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NL ++++ G + + Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLAKTIEELKQKGIWFVCADMNG- 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ I L++G+EG+G+ +E A + M G I +LN S AA V Y Sbjct: 182 TPMYDLDLKGPIGLVIGSEGEGVSRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 265 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 144/245 (58%), Gaps = 10/245 (4%) Query: 31 KKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 K ++ + + ++ L+G H V AAL NP+R+ +L AT+ + LD + Sbjct: 8 KALRGRAGRMKGGRGSGKGTAGHVRLWGRHPVEAALKNPARQHRKLWATREGIDSLDGE- 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVN 142 LP F V+ + ++V K+A HQGL LE PL LD V N ++ ++VLD V Sbjct: 67 -LPPDFAVEYAEVTDLARLVAKDAPHQGLVLECEPLEDVFLDDVANGDPARPVVVLDQVT 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAILRSA AF I+T R++P E VLAKSASGALE +P++R+ NL AL ++ Sbjct: 126 DPHNVGAILRSAAAFGAACIVTQDRHAPPEGGVLAKSASGALETVPWVRVVNLARALDEL 185 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ IGL+ +++ L + +AL+LGAEG+G+R + ++A L + I++ Sbjct: 186 ADLGYWRIGLAGEAEATLSGSLTTGALALVLGAEGEGMRHNIAQHCDTLAKLPITSAIES 245 Query: 263 LNVSN 267 LNVSN Sbjct: 246 LNVSN 250 >gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7] Length = 234 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 12/226 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ + + R+ L + + + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P +L LD S LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q+ +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVS 230 >gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 248 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A + + ++ V +D++ Sbjct: 7 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + ++LD + DPHN+G+I+R+A A G Sbjct: 67 S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G D + Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243 >gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured Desulfobacterium sp.] Length = 270 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 75/264 (28%), Positives = 134/264 (50%), Gaps = 17/264 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWD 84 R++K + +KSR ++ LYG+H V A+ RK++++ K L R Sbjct: 3 RNFKSL----EKSR-LEMDKSEILYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISK 57 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL 138 P P+ +V P + KI G + Q +A + + + + +N L++L Sbjct: 58 LAEPAKIPLISVKPDHLTKITGSD-FQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLL 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GA+ R+A+ GI+ TK S S + ++K+++GALEHI +++N+ + Sbjct: 117 DTVVDPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++M G +G+ + + P+ IAL++G+EGKG+R + + + G Sbjct: 177 IKEMKDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKG 236 Query: 259 IIKALNVSNAAAVALYI--TQNHF 280 + +LN S A AVA+Y Q +F Sbjct: 237 EVSSLNASAAGAVAMYEVFRQRNF 260 >gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 288 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 15/284 (5%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 S++ F K + R + + + + +Q + LYG V A+ R++ Sbjct: 2 SDRPFRDKSDNRNSRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAME-EERQL 60 Query: 69 FQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ N L + + + V +D+I K A HQG+A + +P Sbjct: 61 NRIWVV-NRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITNK-ANHQGIAAQMSPYDY 118 Query: 124 PTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L + ++++ + + DPHN+GAI+R+A A C G++ +R + ++ + Sbjct: 119 IELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTV 178 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 K A+GALE++P R+ NL AL+++ + GF G ++ + K L I L++G+E Sbjct: 179 MKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTAAKTGKSLHTINLTGAIGLVVGSE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+GL TQ++ + + + G +LN S AAA+ALY Sbjct: 239 GEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282 >gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 263 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 5/232 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + ++ L+G H V AAL NP R+ +L AT+ +A LD + LP FPV+ Sbjct: 21 RGSGRASAGHVRLWGRHAVEAALKNPDRQHRKLWATREGVASLDGE--LPPDFPVEYADV 78 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAV 155 Q + ++V K+A HQGL LE A L LD V + ++ ++VLD V DPHN+GAI+RSAV Sbjct: 79 QDLARLVAKDAPHQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAV 138 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF+ ++T R++P E V+ KSASGALE +P+IR+ NL A+++M G+ IGL+ Sbjct: 139 AFNAAALVTQDRHAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGH 198 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +A++LGAEG+G+R + ++A L + I++LNVSN Sbjct: 199 TDTTFAEALPAGPVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250 >gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] Length = 260 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 19 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 79 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 257 >gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] Length = 251 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + V+ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L DA L++LD + DPHN+G+ILRSA A Sbjct: 66 VA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] Length = 253 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96 S + + + G H V AAL++ S+KI+Q + ++ P+ Sbjct: 2 SPKSKKGARDLVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYR 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGA 149 + +D++ + A HQG LE A ++D + ++LD + DPHN+G+ Sbjct: 61 SKRDLDQLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A GII K + + +AK ++GA+E++P R++N+T ++ + G Sbjct: 120 ILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVWV 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + IA+++G E KG+ P+ ++ + + M G +++LN S AA Sbjct: 180 FGTDMEG-QDYWDMDASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAA 238 Query: 270 AVALYIT 276 A+ +Y Sbjct: 239 ALVMYEV 245 >gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 249 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL L + + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +SR+ + P + +G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153 + + V +A HQG+ +E PL L + + + L+VLD V DPHN+GAILRS Sbjct: 59 ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IGL+ Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 255 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 135/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN ++YG HT +AL N +R+ +LL T+N + + + V Sbjct: 2 KSSKANENCWIYGKHTCISALRNKNRRCIELLVTENFYREFEKEIKQCADSKGIKPRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ K HQG+AL+ AP+ + + +S +++LD + D HNIG+ILR Sbjct: 62 NKMFNDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ ++ + G+ G Sbjct: 122 TSACFNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E+ + + M +I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] Length = 515 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 36/307 (11%) Query: 5 SKKKSEK----IFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------- 49 S ++E+ F ++ + RR+ D ++ S +SR ++P+ Sbjct: 124 SGSQNERSGPGRFRDRNDRFGDRRRS-GDERRQPSQRPRSRFDEARPQRPDAAPEAAAAT 182 Query: 50 -----FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99 ++G H AAL R I ++ T +L DA V+ V Sbjct: 183 PPADDLIWGRHATQAALE-AGRPIHRIWCTAEMRSASKFLQLLRDAK-ASGVLVEEVTWA 240 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 + +I G +VHQG+AL+TA + LD + LL+ LD V DPHN+GA++R Sbjct: 241 RLGQITG-GSVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVR 299 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A G++ +R S + AK A+GALEH+P R+ NL +L+K+ G++ +GL Sbjct: 300 SAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGL 359 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +++ L + + L+ G+E +GL T+ + + + GI +LN S A A+ Sbjct: 360 AAEGDVTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALC 419 Query: 273 LYITQNH 279 +Y Sbjct: 420 VYEVARR 426 >gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 14/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------LDWDANLPHPFPVKTVPPQTI 101 LYG+H V AL SRK + ++ D ++ + + Sbjct: 2 DVLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVRLRFENREQL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ A HQG+ T++ + + LL+ LD V DP N+GA+LRSA Sbjct: 62 TRMAKTHA-HQGVVAVVRERSFLTIEDLMAAPADGHPHLLLALDGVEDPQNLGALLRSAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 DG++ +R S SAV K+++GA EHI R+ NL AL+++ +GL Sbjct: 121 GAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDER 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++LG EG+GL ++T + + M G + +LNVS A AV LY Sbjct: 181 GTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLYE 240 Query: 276 TQNHF 280 Sbjct: 241 AARQR 245 >gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus oleovorans Hxd3] Length = 256 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVG 106 LYG+H V AA+ RK+ L R A H PV +P + ++++ G Sbjct: 10 LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEIPARDLEQMTG 69 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+A + L + ++ ++V D + DPHN+GA+ R+A+ Sbjct: 70 -GKVHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGALARTALCAGVH 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + S + K+++GALE +P R +N+ L + G GL ++ + Sbjct: 129 GLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIAGLDGRGEQTI 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 +AL++G EG+G+R + + + ++ +LN S A AVA+Y + Sbjct: 189 YDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMYEAFRQR 248 Query: 280 FAK 282 AK Sbjct: 249 RAK 251 >gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH 391-98] Length = 254 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+K+ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVKNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAD--IVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW + + VP + I K++ + QG+ + Sbjct: 49 ELIVSDQTDLPKDWIVS---DVEMYIVP-EPIVKVLRETETTQGVFAVCEKQEKEV--EL 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N + L+ LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 103 SNGKFLL-LDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ + G + ++ P + ALI+G EG G+ Sbjct: 162 VK-GNLEEWIDKLKTHNVPVYGTALENGVPYGEITPTGSFALIVGNEGNGVHQDILAKCD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] Length = 258 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 147/246 (59%), Gaps = 7/246 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA +L DA + + Sbjct: 11 KEQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVI 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + ++VHQG ALE PL L R + +++LD V DPHN+GAILRS Sbjct: 70 DPRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRS 129 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + GF +GL Sbjct: 130 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLD 189 Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA Sbjct: 190 GEAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAA 249 Query: 271 VALYIT 276 +ALY + Sbjct: 250 IALYAS 255 >gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 253 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKT 95 K + + F+YG + AAL +++I ++ ++ + ++ Sbjct: 2 KREQETPNQTEFVYGHYASVAALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKRGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + + + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+E++P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + + AL++G EGKG+ P ++ M + M G +++LN S A Sbjct: 180 IFGTDM-AGEDYRRWDAKGATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVA 238 Query: 269 AAVALY 274 A++ +Y Sbjct: 239 ASLLIY 244 >gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] Length = 250 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ENL + G + V A + P K+F L ++ R H + V + +D+I Sbjct: 8 ENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLDQI 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + L++LD++ DPHN+GAI+R+A Sbjct: 68 -SETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTANLA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NL ++++ G + + Sbjct: 127 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCADMGGE 186 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I +++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 187 -SMYRLNLTGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYEIV 245 Query: 278 NHFAK 282 + Sbjct: 246 RQRLQ 250 >gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] Length = 347 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 78/296 (26%), Positives = 143/296 (48%), Gaps = 28/296 (9%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ----KSR--HTSQPENLFLYGVHTVSA 59 +K+ K K+ H K R H + + Q KS+ +++ E+ +YG H+V A Sbjct: 41 SQKNGKPPR-KNYHSRKPRAKHSHHSEETQPKQHGYPKSKLVSSTEEESDLIYGRHSVIA 99 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVH 111 AL N ++ ++ +++L +D + + V P+ + +I K H Sbjct: 100 ALQN-QHQLNRVWI----ISQLRYDPRFHSLLVQAKANGTVIDEVAPKRLSQIT-KGGNH 153 Query: 112 QGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+A + A L+ + +L+ D +NDP N+GAI+R+A A G++ Sbjct: 154 QGVAAQIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQNLGAIIRTAEALGAQGLVI 213 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +R + ++ + K A+GALE P R+ NL++AL+++ + GF G ++ + K L + Sbjct: 214 PQRRAVGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAGFWIYGTAAGTGKLLHKVD 273 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G+EG GL ++Q + + + G +LN S A A+ LY T Sbjct: 274 LTGSVVLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNASAATAMVLYETYRQR 329 >gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC 5463] Length = 250 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + ++ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L D L++LD + DPHN+G+ILRSA A Sbjct: 66 VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-23m63] Length = 245 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A + + ++ V +D++ Sbjct: 4 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + ++LD + DPHN+G+I+R+A A G Sbjct: 64 S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G D + Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240 >gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Desulforudis audaxviator MP104C] Length = 251 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 7/243 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99 + +YG + V AL R + ++L + A RL + P PV+ V Sbjct: 5 RDSEKQTVIYGRNPVREALR-GGRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERP 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +D++ A HQG+A + T++ + + L++VL+ + DP N+GAILR+A A Sbjct: 64 LLDRLTDGGA-HQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG + R + + AK+A+GA+E++P R++N+ L++ G +G D Sbjct: 123 GVDGAVVPSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGP 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G E GL + S+ + M G + +LN S AAA+ +Y Sbjct: 183 VSYWDADLGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAV 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + P K+F L ++ R H + V + +D++ + Sbjct: 14 IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQL-SET 72 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++ + ++LD++ DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + +A +AK+++GAL + P +++NL ++++ G + + + Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLWFVCADMGGE-SMY 191 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 192 RMNLTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRG 251 >gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 480 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 23/281 (8%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------FLYGVHTVSAALNNPSRKIF 69 + R ++ + R +PE ++G H+ AAL R I Sbjct: 137 DRRGDRRPSFQRERSRLPFRDRTPRKPEGEAAAATPPADDLVWGRHSALAALE-AGRPIH 195 Query: 70 QLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 ++ T + + L V+ V + +I G +VHQG+AL+TA + Sbjct: 196 RIWCTPEMRSAAKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIALQTAAAETID 254 Query: 126 LD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+ + LL+ LD V DPHN+GA++RSA A G++ +R S + AK Sbjct: 255 LESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAK 314 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GALEH+P R+ NL +L+K+ G++ IGL+ + L + + L+ G+E + Sbjct: 315 VAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLAGEGDVTLPDVDLSGPLVLVTGSEDQ 374 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL T+ + + + G+ +LN S A A+ +Y Sbjct: 375 GLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCVYEVARR 415 >gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710b] gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] Length = 260 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 19 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 79 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 257 >gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] Length = 264 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ P + V Sbjct: 16 KEQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQAGITP-EVV 74 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG LE PL +L V + +++LD V DPHN+GAILRS Sbjct: 75 DPRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVGAILRS 134 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I + ++ E+ LAKSASGALE PY+R+ NL D+++++ + G+ +GL Sbjct: 135 AEVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYLVLGLD 194 Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +++ +E + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 195 GEAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAA 254 Query: 271 VALYITQNH 279 +ALY ++ H Sbjct: 255 IALYASRPH 263 >gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] Length = 250 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + ++ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L D L++LD + DPHN+G+ILRSA A Sbjct: 66 VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 318 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 21/284 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENL-FLYGVHTVSAALNN--PSRKIF 69 + A+ R H YK+ Q+ +++ R + + G + V L+ P+ ++ Sbjct: 37 TPKAEDRVYHAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALY 96 Query: 70 QLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 TKN RL + V V +D++ G +HQG+ L+ P ++ Sbjct: 97 VAEGTKN-DERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVE 154 Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L++ LD++ DP N+GA++RS AF G+I +R S S +AV +++ Sbjct: 155 DLIQQAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTS 214 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P + +N+ +L+++ G+Q +GL + L+ +++G+EGKGL Sbjct: 215 AGTAARLPVAKATNMVRSLKQLQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGL 274 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 ET ++ + M +++LN S AA V L + Q AK Sbjct: 275 SRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318 >gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] Length = 251 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 11/237 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 G+H V+A L + ++ L ALA+L A V+ +D+ Sbjct: 15 GIHAVAAVLQHAPERVRLLQLASGTLEPALAQLLEQAQ-ARGISVERAGRDKLDQH-HPG 72 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + AP A+ L++VLD V DPHN+GA LR+A A I+ Sbjct: 73 FQHQGVIVHCAPRPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIV 132 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T + +S + + K ASGA E +P + + NL L + G T+GL + + L Sbjct: 133 TPRHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+E +A + M G +++LNVS A + L+ + Sbjct: 193 DLRPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249 >gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] Length = 247 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQRG 244 >gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] Length = 265 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 11/258 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPF 91 + + K + + + G + V A + P K++ L ++ R H Sbjct: 10 KKMHDKKSYDKKENENIIEGRNAVMEAFRSGKPVDKLYVLDGCQDGAVRSIIREARKHDT 69 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 + V ++++ + HQG+ A ++ + L++LD++ DP Sbjct: 70 ILNFVEKDRLNQL-SETGKHQGVIASVAAYEYAEVEDMLKLAEEKGEDPFLIILDNIEDP 128 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI+R+A G+I KR + +A +A++++GAL + P +++NL ++ + Sbjct: 129 HNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNLVKTMEDLKK 188 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + D + I L++G EG+G+ ++T A + M G I +LN Sbjct: 189 KGLWFVCADMDGDV-MYDVNMKGPIGLVIGNEGEGVGRLVKDTCDFTARIPMKGDIDSLN 247 Query: 265 VSNAAAVALYITQNHFAK 282 S AA V Y + Sbjct: 248 ASVAAGVLAYEIVRQRMQ 265 >gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] Length = 248 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 15/244 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL I ++ +A+A + A V TVP + Sbjct: 4 ENTDFIIGRHPAVMALKADQE-INKVFVQAGLKADAIAEIIKLAKQKRLV-VSTVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ HQG+AL A LD + ++LD + DPHN+G+I+R+A Sbjct: 62 DQLTD-HQNHQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPHNLGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GALEH+P R++NL +++ G G Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTAKELKDRGVWLFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++G EGKG+ P +++ M + M G +++LN S AA++ +Y Sbjct: 181 KGR-DYRTWDAHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNASVAASLLIY 239 Query: 275 ITQN 278 N Sbjct: 240 QGFN 243 >gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 288 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 15/284 (5%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 S++ F K + R + + + + +Q + LYG V A+ R++ Sbjct: 2 SDRPFRGKSDNSNFRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAME-EERQL 60 Query: 69 FQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ N L + + + V +D+I K A HQG+A + +P Sbjct: 61 NRIWVV-NRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITSK-ANHQGIAAQMSPYEY 118 Query: 124 PTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L + ++++ + + DPHN+GAI+R+A A C G++ +R + ++ + Sbjct: 119 IELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTV 178 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 K A+GALE++P R+ NL AL+++ + GF G ++ S K L I L+LG+E Sbjct: 179 MKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGAAAKSGKSLHTINLTGAIGLVLGSE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+GL TQ++ + + + G +LN S AAA+ALY Sbjct: 239 GEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282 >gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 249 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 15/237 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G H AAL + I ++ K +A+A++ A H + VP +D++ Sbjct: 7 EFVIGRHPAVAALKSDQE-INKVFIQKGLRTDAIAQIIKLAKERHLV-ISNVPKTKLDQM 64 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+AL A T+D + L++LD + DPHN+G+I+R+A A Sbjct: 65 VD-HQNHQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTADAA 123 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + ++V+AK+++GA+E +P R++NL +++ + G G Sbjct: 124 GVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLVQTAKELKARGVWLFGTDMQG- 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++G EGKG+ P ++T M + M G +++LN S AA++ +Y Sbjct: 183 TDYRRWDAQGAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLLIY 239 >gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 316 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 28/294 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ K H AKL R R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ T+N RL ++ P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATTLYIAAGTRN-DKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P ++ + + ++LD++ DP N+GA++RS AF DG+I +R S Sbjct: 141 IPPYKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI 229 S +AV ++++G +P R +N+T +++ G+Q +GL + L+ E D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 +++G+EGKG+ ET + + M G +++LN S AA L + Q A Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRAA 314 >gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] Length = 304 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108 L+G H V AAL NP+R +L T+ A+ + D +A LP PV+ + ++V ++ Sbjct: 49 LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108 Query: 109 AVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQGL L+ +PL LD V + L++LD V DPHN+GAILR+ AF +IT Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R++P ES LAK+ASGALE +P++R+ NL+ AL+ + G+ I L + K + Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270 >gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 ++G H+ A L + + ++ + ARL V+ V P ++ + Sbjct: 7 LIFGFHSTLAKLRHDPGAVREIYVDASRHDARLRDLVAHAEFAAVRVMPVDPARLEALA- 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L LD + L+VLD + DPHN+GA LR A A Sbjct: 66 PGARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + K ASGA E +PYI ++NL AL++M IG + +K L Sbjct: 126 VIAPKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A +LGAEG GLR T+ET + + M G + +LNVS A V LY + Sbjct: 186 AAQWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRRN 245 >gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] Length = 254 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] Length = 254 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + +++G + V AL + RK+ ++ K L + + + ++ + Sbjct: 11 SDYIFGRNAVLEALESD-RKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKHKLENM 69 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 + VHQG+ + T++ + S L++LD + DPHN GAI+R+ A Sbjct: 70 A-EGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRTCEAV 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII +KR ++++ KS++GA+ HI +++N+ D + K+ G +++ Sbjct: 129 GVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGACGEAE 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K IA+++G EGKG+ ++ + L M G + +LN SNA A+ +Y Sbjct: 189 KIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEAL 248 Query: 278 NHF 280 Sbjct: 249 RQR 251 >gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei DM98] gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 14] gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 91] gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 9] gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei B7210] gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 7894] gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei NCTC 13177] gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 112] gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei BCC215] gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 23344] gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei SAVP1] gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10229] gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 668] gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106a] gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10247] gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] Length = 247 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244 >gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] Length = 268 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 12/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKT 95 + R + + + G V L R + +L + A + + Sbjct: 16 RRRVQGESQRRRVVGRQPVLELLR-AGRPVNRLFIAEGAEGGSMAEITARAKEAGIVIIR 74 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP +D+ HQG+ + AP LD R L ++LD + DPHN+G Sbjct: 75 VPRNRLDEWAS-GVNHQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A + DG++ KR + + + + K+++GA E +P IR+ NL + + G++ Sbjct: 134 SILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYR 193 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G ++ + AL++G EGKGL +E + H+ M G + +LN A Sbjct: 194 VVGADTEGECDYTDVDYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVA 253 Query: 269 AAVALYITQNHFA 281 A V LY + Sbjct: 254 AGVLLYEAIRQRS 266 >gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] Length = 246 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + LYG + V AL + ++ ++L + ++ P +D++ G Sbjct: 1 MLLYGRNPVLEALRDG--RVTEVLVARGVEEAFVRSLK-AFDVRLRFAPRIELDQLAGTT 57 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ E L T+D + + L+++LD + DP N GAI+RSA G Sbjct: 58 Q-HQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPRNFGAIIRSAEVLGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S V+ K+A+GA ++P + NL + + G G + ++ + + Sbjct: 117 VVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKEDGVWIYGAAGEAAQDIG 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + K+AL++GAEG+GLR +E ++ + G +++LN S AA + LY Sbjct: 177 RTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARD 236 Query: 282 K 282 K Sbjct: 237 K 237 >gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 256 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 8/253 (3%) Query: 30 YKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 +K + FN+ +++ ++YG H V +ALNNP R+I +L T+ D + L Sbjct: 7 HKLLTVFNKMQNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLI 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPH 145 + V + K++ HQG+A + P+ S L+ + N + + +LD + D Sbjct: 64 GTRSYEIVNNDILSKLLENH-THQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQ 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGAI+RSA AF + II + SP+ES +AK+A G LE IP I+++NL + + Sbjct: 123 NIGAIIRSAAAFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKH 182 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF IGL+ + ++ +DKI L+ G+E KG+R ET +A + + +++LNV Sbjct: 183 GFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNV 242 Query: 266 SNAAAVALYITQN 278 SNAA++ + N Sbjct: 243 SNAASIIFHSLHN 255 >gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus helveticus H10] Length = 250 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + ++ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L D L++LD + DPHN+G+ILRSA A Sbjct: 66 VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 252 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + ++TVP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALAKKKRLVIQTVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQGL L + LD + L++LD + DPHN+G+ILRSA A Sbjct: 66 V-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 VDYREWNAKGKAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ] gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma phagocytophilum HZ] Length = 258 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 14/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 L++YG H +AL NP+R +LL T + + D L ++ V ID +VG Sbjct: 10 LWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIAKIDSLVG 69 Query: 107 KEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSA 154 +A+HQG+ L+ PL ++ + ++VLD V D HN+GA+LR+A Sbjct: 70 SKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNVGAVLRTA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F+ D ++ T+ SPSES +AK++SGA++ +P + I NL L+ + + G + Sbjct: 130 ACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDA 189 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L Q +++ +ILGAEGKG+R T++ + + M +++LNVSNAAA+A+Y Sbjct: 190 SGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMY 249 >gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus crispatus ST1] gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus ST1] Length = 251 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + V+ VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L DA L++LD + DPHN+G+ILRSA A Sbjct: 66 VA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGI+ KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis G4] Length = 247 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++L + R + A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG + ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] Length = 362 Score = 239 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 17/267 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDAN 86 K ++ + + S E +YG H+V AAL R + ++ T + + Sbjct: 87 KDSGPVDETAANLSDEETELIYGRHSVQAALEK-ERTLNRIWITPQLRYDPRFHSLVNQA 145 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139 + V V + +D+I + A+HQG+A + + L + +L+V + Sbjct: 146 KANGSIVDEVDFRRLDQITDR-AIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAE 204 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +NDPHN+GAI+R+A A G++ +R + +A + K A+GALE+ P R+ NL+ AL Sbjct: 205 GLNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRAL 264 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLH 255 +++ + GF G ++ K + K+A L++G+EG GL Q + + Sbjct: 265 EELKAAGFWIYGTAAKEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIP 324 Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS A +ALY + Sbjct: 325 LRGNTPSLNVSVATGMALYEIYRQRGQ 351 >gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] Length = 272 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 8/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 +++ D K NQK Q ++++GVH V++AL N SRK + T+N +L Sbjct: 7 KQSFADNTKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFFTRNGAQKL 66 Query: 82 DWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVL 138 DA LPH + P+ IDK+V ++VHQG+ L L + V +++L Sbjct: 67 GLDAEHLPHYA--QLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLANGEGPIVIL 124 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+GA+ RS AF +I R SP+ LAK+A GA++ IP + + N++ A Sbjct: 125 DQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEVAVVNISRA 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + G+ +G+ +++ + Q +A+++GAEG G+RP + + +A + + Sbjct: 185 VTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCSQLAKISIS 244 Query: 258 GIIKALNVSNAAAVALYITQNH 279 +++LNVS+AA++ALY Sbjct: 245 PQMESLNVSSAASIALYEANRQ 266 >gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] Length = 256 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ T+ A V+ P +D++ Sbjct: 3 VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ + LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ L++D ++ Sbjct: 122 SHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + AL+LG+EG+G+RP + T A + M G + +L+VS +AAVALY Sbjct: 182 PLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] Length = 248 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 138/245 (56%), Gaps = 7/245 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ + + ++YG H V +A+NNP R+I +L T+ D + L P + V Sbjct: 8 QNKQLNYQNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTRPYEIVNN 64 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 I K++ K HQG+A + P+ S LD + N Q +++LD + D NIGAI+RSA Sbjct: 65 YIISKLL-KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIGAIIRSAA 123 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + GF IG++ Sbjct: 124 AFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGY 183 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + +DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + Sbjct: 184 ANEYFTDKFISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHS 243 Query: 276 TQNHF 280 F Sbjct: 244 LHKSF 248 >gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 428 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 14/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK 103 +++G H+V AALN+ R I ++ T + + L ++ VP + + Sbjct: 188 EDWIWGKHSVFAALNS-ERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQ 246 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+AL+ A S +L+ + ++ +++ LD V DPHN GAI+RSA A Sbjct: 247 LTS-GAVHQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEA 305 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F C GII +R S + +AK A+GALEHIP R+ NL A+ ++ GF IGLS D Sbjct: 306 FDCKGIIVPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDG 365 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYI 275 + P+ + + + +I+GAE KG+ Q+ + + + G +LN S AAA+ Y+ Sbjct: 366 QVPISEFKEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCYL 425 Query: 276 TQN 278 + N Sbjct: 426 SNN 428 >gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] Length = 442 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 18/289 (6%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 N +K + + K+S A + + + + S+ S + ++G H+ AAL Sbjct: 133 NRFERKSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLS---DDLIWGRHSTEAAL 189 Query: 62 NNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 R I ++ T + +L D V+ V + ++ AVHQG+ L Sbjct: 190 V-GGRAIHRIWCTSELRSTPKFFQLLKDQK-ASGVLVEEVSWSRLGQLT-NGAVHQGIVL 246 Query: 117 ETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + A L +DA + +S LL+ LD + DP N+GAI+RSA A G+I +R S Sbjct: 247 QIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRS 306 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +AK A+GALEH+P R+ NL +L+K+ G+ +GL+ + L + + Sbjct: 307 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPL 366 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++G+E KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 367 VVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 415 >gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 316 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 28/295 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ K H AKL R R+ RH + + + G + V L Sbjct: 35 KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHDKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ + T+N ARL + P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATSLYIVQGTRN-DARLSEAVAMCNTRNIPILEVQRHEMDRMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + + ++LD++ DP N+GA++RS AF G+I +R S Sbjct: 141 IPPYKYADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +AV ++++G +P R++N+T +Q G+Q +GL + + L+ D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 +++G+EGKG+ +E ++ + M +++LN S AA L + Q A+ Sbjct: 261 VIVIGSEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQRRAAQ 315 >gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 251 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 21/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K++ + +KK+ +K R + L G H V A+ + + + Sbjct: 2 KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + W+ PV V + I E QG+A LS L+ V Sbjct: 50 ELIVDERTAVPPGWNVT---GVPVTIVTEAVMKAISSTE-TPQGIAA-VCRQLSTELEGV 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++D V DP N+G ++R+A A D +I + + + + ++ G+L H+P Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L + + G G + ++ ++ AL+ G EG G+RP T Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTT 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY Q Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC 19707] gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 274 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ ++ L + + R L A L + V + +D +V Sbjct: 31 YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 89 Query: 109 AVHQGLALETA--PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + P L+ L+ + LL++LD V DPHN+GA LR+A A G Sbjct: 90 ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220 ++T K + +AV K ASGA E IP +R++NL ++ + G +G L Sbjct: 150 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 209 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Q Sbjct: 210 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269 Query: 281 A 281 Sbjct: 270 G 270 >gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC 25196] gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 249 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 9/242 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F++G H +++ L + + ++ ++ AR + + Sbjct: 3 GSRFIFGFHAITSRLRQNAASVREVFLDAERRDQRARDLAALAEAQDIRLIACDNARLMA 62 Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + G A HQG+ + LD + LL+VLD + DPHN+GA LR A AF Sbjct: 63 LAG-NARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A + K ASGA +++PYI ++NL L+ + G +G ++D+ Sbjct: 122 VHAVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L IA +LG+E KG+R T+E + + M G +++LNVS +A + L+ T Sbjct: 182 QLGVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] Length = 247 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + R + A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ A L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ A Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + P K+F L ++ R H + V + +D++ + Sbjct: 14 IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQL-SET 72 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++ + ++LD++ DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + +A +AK+++GAL + P +++NL ++++ + G + + + Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKARGLWFVCADMGGE-SMY 191 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 192 RMNLTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRG 251 >gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547] gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM 20547] Length = 323 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 12/272 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 + RR + + + + + G + V AL P+ ++ + +T + Sbjct: 51 KRARRAEKSAGGQRPVRGSKARSGKDSTEMVLGRNAVLEALRTQVPATHLY-VASTIESD 109 Query: 79 ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132 R+ L P+ +D++ E VHQGL L+ P LD + ++ Sbjct: 110 DRVKEALRLASEQGVPLLEAGRPELDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADV 168 Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + LD + DP N+GAI+RSA AF GII T+R S +A ++++GA +P R Sbjct: 169 TPLFVALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVAR 228 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATS 250 ++NL ALQ++ S G IGL +D L + D + +++G+EGKG+ T+E Sbjct: 229 VTNLNRALQELRSQGIFVIGLDADGDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQ 288 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M ++LN AAAV LY A+ Sbjct: 289 IVSIPMTAGNESLNAGTAAAVTLYEIARERAQ 320 >gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] Length = 526 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 13/249 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVP 97 +S+ E ++G H+ AAL + R I ++ T + + L V+ V Sbjct: 184 KSSETEKDLIWGRHSTQAALESG-RPIHRIWCTSEVKSSSKFLQLLKKVKASSVLVEEVS 242 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + +++G HQG+AL+ A + + L + + LLM ++ + DPHN+GAI Sbjct: 243 WARLGQLIGGSG-HQGIALQMAAVETLDLTKLIEDCCHLGENPLLMAVEGLTDPHNLGAI 301 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA A G+I +R + + +AK A+GALEH+P R+ NL +L + G++ + Sbjct: 302 VRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSLDILKDKGYRIV 361 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL+++ L + N + ++ G+EG GL T+ + + + G +LN S A+A Sbjct: 362 GLATEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGATPSLNASVASA 421 Query: 271 VALYITQNH 279 + LY Sbjct: 422 LMLYEVARR 430 >gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D + AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232 K ++GA +P R++NL AL++ G+ +GL PL + + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + A+ Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324 >gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 318 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 21/284 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENL-FLYGVHTVSAALNN--PSRKIF 69 + A+ R H YK+ Q+ +++ R + + G + V L+ P+ ++ Sbjct: 37 TPKAEDRVYHAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALY 96 Query: 70 QLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 TKN RL + V V +D++ G +HQG+ L+ P ++ Sbjct: 97 VAEGTKN-DERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVE 154 Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L++ LD++ DP N+GA++RS AF G+I +R S S +AV +++ Sbjct: 155 DLIQQAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTS 214 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P + +N+ +L++ G+Q +GL + L+ +++G+EGKGL Sbjct: 215 AGTAARLPVAKATNMVRSLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGL 274 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 ET ++ + M +++LN S AA V L + Q AK Sbjct: 275 SRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318 >gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EVIVKVLRETETTQGVFAVCEKHES---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] Length = 259 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ ++ L + + R L A L + V + +D +V Sbjct: 16 YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 74 Query: 109 AVHQGLALETA--PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + P L+ L+ + LL++LD V DPHN+GA LR+A A G Sbjct: 75 ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220 ++T K + +AV K ASGA E IP +R++NL ++ + G +G L Sbjct: 135 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 194 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Q Sbjct: 195 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 254 Query: 281 A 281 Sbjct: 255 G 255 >gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] Length = 306 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 10/241 (4%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G V L +P R ++ + A PV + P + + V E Sbjct: 44 VEGRQPVLELLRSGHPVRHVWVAAGRRGAALAELEALARRRGVPVTEIDPAELQRRVQTE 103 Query: 109 AVHQGLALETAPLLSPT-LDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ APL P LD + R LL++ + DPHN+GA+ RSA A G Sbjct: 104 G-HQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDPHNLGAVFRSAEAAGAHG 162 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + S KS++GAL H+ +++NL +++ G + + +P + Sbjct: 163 AVVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKEQGVWVVAADPEGAQPYD 222 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q AL+LG+EG+G+ P + M G + +LNVS AA + L+ Sbjct: 223 QWDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQRR 282 Query: 282 K 282 + Sbjct: 283 Q 283 >gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] Length = 247 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R + A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVEEVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ A L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] Length = 255 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 13/249 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPP 98 ++P + G + V AL +R I +L + A D VK V P Sbjct: 4 KRTEPAQDVIAGRNAVKEAL-CSARPIESILVARGARNGSLGDIVSKAKAQGVAVKEVDP 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAIL 151 + ++ + A HQG+ A ++ D L+V D +NDPHN+GAIL Sbjct: 63 KRLEFLC-PGANHQGIVALAAAHEYASVEDMLALADERGEPPFLIVADELNDPHNLGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR S + + K+++GALE++P R+SNL AL+ + G G Sbjct: 122 RTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVSNLAAALEDLKKRGLWIYG 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + AL++G+EG G+ +E + L M G I +LN S AA V Sbjct: 182 ADMEG-TPWCEAELTGPAALVIGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGV 240 Query: 272 ALYITQNHF 280 +Y Sbjct: 241 LMYEFMRQR 249 >gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] Length = 250 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 +N ++GV V A+ I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKE-IDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ +P+ P L + LL++LD + D N GAI R+ Sbjct: 62 RITKK--NHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYE 239 Query: 276 T--QNHF 280 Q F Sbjct: 240 AVKQRGF 246 >gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400] gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans LB400] Length = 247 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + R + A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ A L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4] gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis SP1PR4] Length = 263 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIV 105 LYG+H V A+ + R + + ++ ARLD + + P ID++ Sbjct: 2 ELLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRMA 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E +HQG+ + ++ + + + LD V DPHN+GA+LR+A Sbjct: 62 KTE-MHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGI+ +R S +AV+AK+++GA EH+ +++NL AL++M IGL Sbjct: 121 VDGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTP 180 Query: 219 PLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+LG+EG GL ++T + + M G + +LNVS A AV +Y Sbjct: 181 DYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMYEVA 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20] gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20] Length = 253 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 13/250 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95 K + + F+YG + +L +++I ++ ++ + ++ Sbjct: 2 KREQGTADQAEFVYGHYASVESLK-GTQEINKVWLQTGLQDKIRNEITQLAKKRGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+EH+P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + AL++G EGKG+ P ++ SM + M G +++LN S A Sbjct: 180 VFGTDMSG-DDYRRWDAKGPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVA 238 Query: 269 AAVALYITQN 278 A++ +Y N Sbjct: 239 ASLLIYQGFN 248 >gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] Length = 228 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 8/222 (3%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------ 120 ++F + ++ V+ Q +D+ V + AVHQG+ P Sbjct: 5 EVFVMKGREDRRLLPLLQQLEEGGIRVQVAQRQWLDEKV-EGAVHQGIVARVKPGRQYQE 63 Query: 121 -LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L L ++ + L++LD V DPHN+GA LRSA A D +I + S +A K Sbjct: 64 NDLPDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGIDAVIVPRDRSAQLNATAKKV 123 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A GA E +P IR++NL ++ + IG + ++ L Q +AL++GAEG G Sbjct: 124 ACGAAESVPLIRVTNLARTMRLLQEENIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDG 183 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +R T+E + + M G + +LNVS A + L+ + Sbjct: 184 MRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 225 >gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123 K L ++ A ++ Q +D+ AVHQG+ P Sbjct: 1 KPLILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-SDGAVHQGIIARVKPGRQYQE 59 Query: 124 ---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P L A+ + L++LD V DPHN+GA LRSA A +I K S +A K A Sbjct: 60 NDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVA 119 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA E +P IR++NL ++ + +G + ++ L Q ++AL++GAEG+G+ Sbjct: 120 CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGM 179 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 R T+E + + M G + +LNVS A + L+ Sbjct: 180 RRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 219 >gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae BGR1] Length = 250 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKI--VG 106 LYG H V+A L + + + ++L + R D V+ + ++ + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTDFLQTAKEAGVRLIAADE-TRLWGLA 64 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L L+ LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 65 HTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG + D+ L Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAPASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + +L M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 44 SQPENLFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQ 99 + + F++G H L + +I ++ + A + V+T P Sbjct: 2 TSNDKDFVFGRHAGLDFLKTQSADRINKVFLQHGVQEDFANQVYALAKKKRLVVQTAPKN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D++V HQGL L + LD + L++LD + DPHN+G+ILR Sbjct: 62 KLDRLVA-GGNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPHNLGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D II KR++ ++V+AK+++GA++++P R++NL + + G+ G Sbjct: 121 SADATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKRGYWIFGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 Q N K L++G EGKG+ P ++ L M G +++LN S A + Sbjct: 181 DMKG-TDYRQWNANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQSLNASVATGIL 239 Query: 273 LYITQN 278 LY N Sbjct: 240 LYQMLN 245 >gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V+ AL + K+F L ++ R H + V + +D + Sbjct: 6 EELTIEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSM 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + + + +LD + DPHN+GAI+R+A Sbjct: 66 -SETGKHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLA 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+ + P +++N+ ++++ G + + D + Sbjct: 125 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCAAMDGE 184 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I L++GAEG+G+ +E A + M G I +LN S AA V Y Sbjct: 185 V-MYNLDLKGPIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIV 243 Query: 278 NHF 280 Sbjct: 244 RQR 246 >gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 150/297 (50%), Gaps = 24/297 (8%) Query: 4 ISKKKSEKIFSLKDSHYAK-----LRRNHRDYKKMQSFNQKSRH------TSQPENLFLY 52 I K++ + +L +S+ K L+++ K + S+ + + +++ Sbjct: 41 IHSSKNQGVNNLDESYKKKDNFSYLKKSKPINKSNIKVSSNSQDIYQDLANKKNFDDWIW 100 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKE 108 G H+V AL N R I ++ T + + L ++ V + ++ Sbjct: 101 GKHSVFEALIN-QRAINRIWCTSEIFSSEKFYILLKELKSKGVLIEEVSWNRLSQLT-FG 158 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ A + +L+ + ++ +++ LD + DPHN+GAI+RSA AF C G Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEH+P R+ NL AL+++ GF IGLS D + + Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + +I+GAE KG+ TQ+ + + + G +LN S AAA++L+ N Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHLTN 335 >gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + +HQG+A + P+ S L+ ++N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236 >gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens str. 13] gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str. 13] gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] Length = 289 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63 K K L L R R ++ + N ++ + + + G + V L + Sbjct: 2 TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFTEEEVKVREDLVEGRNAVIELLKS 61 Query: 64 PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I Q+ + ++ ++ A VK V + +D ++ + HQG+ + Sbjct: 62 D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118 Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + K++ GA+EH+ +++N+ +A++++ + G ++ + +I Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGII 238 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282 >gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4] Length = 246 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 14/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKI 104 ++ G + V AL R I ++ + + ++ L V+ VP + +D++ Sbjct: 3 TDYIAGKNPVIEALK-AGRDINKIWVAEGSQKGQMQQVLGLAKESSVQVLFVPKKKMDQM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+ + A +LD + + L+++LD + DPHN+G+I+R+A A Sbjct: 62 VS---NHQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLGSIMRTADAV 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+EHIP R++NL+ + ++ G G + K Sbjct: 119 GAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIWVTGTDAKGK 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q + + L++G+EGKG+ +E + L M G + +LN S AA++ LY Sbjct: 179 QDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVAASLLLYEVH 238 Query: 278 N 278 Sbjct: 239 R 239 >gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] Length = 265 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98 + + L G + V AL R + +L K R + +K V Sbjct: 5 KREKRKEDVLVGRNAVFEALR-AGRPVDSVLIAKGNSGGPVRRIVELCRERGVVIKDVSS 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 +D I G HQG+A A + + L++ D +NDPHN+GAI+ Sbjct: 64 VKLDAICG-GMSHQGVAAMAAAHEYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAII 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR + +A + K+ASGALE++P R+SNL ++++ G G Sbjct: 123 RTAECCGAHGVIIPKRGAVGLTAAVDKAASGALEYMPVARVSNLAATVEELKKEGVWVYG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D +P + + A+I+G+EGKG+ +E + + M G I +LN S AA + Sbjct: 183 TDMDG-QPFYETDFSGGAAVIIGSEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGI 241 Query: 272 ALYITQN 278 LY Sbjct: 242 VLYEAAK 248 >gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 243 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-TIDKIVGKE 108 ++YG +TV +L + ++++ KNA V V + ++++VG Sbjct: 4 YIYGKNTVLESLK-GEKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVG-N 61 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ +T ++D + ++ LL++LD + DPHN+GAILR+ A DG+ Sbjct: 62 VVHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S ++ +AK ++GA++++ +++NL+ L + GF +G + + Sbjct: 122 IIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRA 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ + L M G + +LN S A A+ LY N Sbjct: 182 IDYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYN 237 >gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1001] Length = 247 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + R + A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + S L++VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 312 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 28/292 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ +H KL R RD RH + E + G + V L Sbjct: 33 KGPTPKAEDRVYHA--AHKRKLERQRRD---------SGRHERE-EADLVVGRNPVVECL 80 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + LL + RL + PV VP + +D + G +HQG+ L+ Sbjct: 81 -HAKVPSEALLIAQGTGHDDRLSEAVQMANTRGIPVHEVPRRDLDNMTG-NTLHQGIGLK 138 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + + +VLD++ DP N+GA++RSA AF G+I +R S Sbjct: 139 IQPYKYADVFDLIGGVRDRGETGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSA 198 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 + V ++++G +P R +NLT +++ G+ +GL + + L+ D + Sbjct: 199 QVTGVAWRTSAGTAARLPVARATNLTRTIKEFKDNGYMVVGLDAGGEHTLDTFDGATDPV 258 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +++G+EGKG+ +E + + +++LN S AA V L + Q Sbjct: 259 VIVVGSEGKGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQRR 310 >gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 244 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ LD + L + V Sbjct: 7 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREI---LDTNKKLIGTRSYEIVNN 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K++G + HQG+ + P+ S LD + +LD + D NIGAI+RSA Sbjct: 64 DILSKLLGNQ-THQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQNIGAIIRSAA 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II K SP+ES +AK+A G LE I I+++NL + + GF IGL+ Sbjct: 123 AFDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHGFWIIGLTGS 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DK+AL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 183 AHDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVSNAASIIFH 241 >gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 30/273 (10%) Query: 31 KKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL 87 KK+ S + + QPE ++G+H V+ L + +L R+ L Sbjct: 26 KKVVSRKESGQRWPADQPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGRVAAIVEL 85 Query: 88 P--HPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------ 131 H P+ PP E HQG+A AP +L + Sbjct: 86 AASHRIPLDRAGLPP------AAAELPHQGVAARVAPPSPLSLAELLQRLPALGPAPASS 139 Query: 132 -----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 LL+VLD + DPHN+GA+LRSA AF DG+I K S S + K+A+G Sbjct: 140 PAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAAL 199 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + R +NL AL + GF G S ++ L + L+LG E KG+RP ++ Sbjct: 200 LDICRTTNLAGALGTLKKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKK 259 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +++LNVS AA + L + Sbjct: 260 HCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRR 292 >gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 249 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H +K V + +D++ + Sbjct: 10 VEGRNAVLEAFRSGKSVDKLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQL-SET 68 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ TA ++ + L++LD++ DPHN+GAI+R+A G Sbjct: 69 GKHQGVIAMTAAYNYAEVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHG 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A +A++++GAL + P +++NL ++ + G + + + Sbjct: 129 VIIPKNRAVGLTATVARTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCADMGGTQ-MY 187 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 188 DLDLKGAIGLVIGNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQR 246 >gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 104/244 (42%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 37 NQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ R P +LYG H V AAL+NP R + QLL T A A L+ P + Sbjct: 60 AERGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQR 119 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V ID I G++AVHQG+AL L +P L D V +++LD V DP NIGAILRSA Sbjct: 120 VDRARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSA 179 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF +I R +P E+ LAK+ASGALE +P +R+ NL+ + + S G T+GL + Sbjct: 180 AAFGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDA 239 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++AL+LGAEG GLR T+E +A L M G +++LNVSNAAAVALY Sbjct: 240 GGGILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALY 299 Query: 275 ITQN 278 Sbjct: 300 EMSR 303 >gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 248 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 15/244 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL I ++ +A+A + A + TVP + Sbjct: 4 ENTDFIIGRHPAVMALKADQE-INKVFVQAGLKADAIAEIIKLAKQKRLV-ISTVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ HQG+AL A +D + ++LD + DPHN+G+I+R+A Sbjct: 62 DQLTD-HQNHQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPHNLGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GALEH+P R++NL ++++ + G G Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTVKELKNRGVWLFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++G EGKG+ ++ M + M G +++LN S AA + +Y Sbjct: 181 KGR-DYRTWDAHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNASVAAGLLIY 239 Query: 275 ITQN 278 N Sbjct: 240 QGFN 243 >gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] Length = 293 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R R + S S + LYG H V AL RK+F + AT+ A +L + Sbjct: 36 RPARAAEPPHKAATPSFRGSSADISVLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPE 95 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVND 143 + V + + + +G AVHQG+ LE P + + D S +++VLD + D Sbjct: 96 IAAA-GLTARLVAAEDLSRRLGPAAVHQGVMLEARPFEALDISDIAPESGVVLVLDQITD 154 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI R+A AF D ++ T+R++P + VLAK+ASG LEH+P I + NL AL+ + Sbjct: 155 PHNVGAIARTAAAFRVDALVMTERHAPELTGVLAKAASGGLEHVPIIHVVNLARALRALK 214 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+ +GL S+ + L + +ALILG EGKGLR T+E +A L MPG IK+L Sbjct: 215 DQGYLRVGLDSEGESTLTDAPLSRPLALILGGEGKGLRRLTRENCDLVARLDMPGPIKSL 274 Query: 264 NVSN 267 NVSN Sbjct: 275 NVSN 278 >gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] Length = 315 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 13/275 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATK 75 + K R + K+ Q ++ + + + G + V AL + + + Q + Sbjct: 41 HVKNRLANAKAKQTQRRTTAAKGRGRSSSELVVGRNPVFEALRDGVPATALYVQQFIDND 100 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----- 130 + A + P +D++ HQGL L+ P + + Sbjct: 101 ERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLPAAAYD 159 Query: 131 --NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G P Sbjct: 160 EGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTP 219 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247 R++NLT AL+ G +GL++D + + E + + +++G+EGKGL ET Sbjct: 220 VARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSRLVGET 279 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + MPG ++LN AA + +Y + A+ Sbjct: 280 CDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 314 >gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] Length = 247 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + R + + + + Sbjct: 6 VLYGFHAVTARIRHDASSVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L L+ LD + S LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G S ++ K L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] Length = 261 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 4/250 (1%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K++ +KSR + + G P +I +L +++ A+ + N Sbjct: 11 KELLRLQKKSREREKEGVFIVEGPRMAEEI---PRERIVKLYVSESFQAKCVKEKN-DRF 66 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V T+ V QG+ + D + + ++VL+++ DP N+G I Sbjct: 67 IQEAEVMSDTVFAHVSDTKTPQGILAVVRRMEYTAEDILGETPHVLVLENIQDPGNLGTI 126 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+A A GI+ +K + + +S GA+ IP+I +L + ++ G Sbjct: 127 FRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDDLKGTIDELKREGITVY 186 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + E A ++G EG GL +T A + M G ++LN + A+A Sbjct: 187 AAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILIPMEGGAESLNAAVASA 246 Query: 271 VALYITQNHF 280 V ++ Sbjct: 247 VLMFEAGRQR 256 >gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 247 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 142/246 (57%), Gaps = 18/246 (7%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 R ++ Q+ + + R +G H V+AAL NP+R + ++ T+ ALA LD Sbjct: 3 RRGHRPSQASSNRPRF---------WGRHAVTAALANPNRTVRKIWGTREALAALD---- 49 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHV 141 LP P+ + ++V +A HQGL E PL L + + + L+VLD V Sbjct: 50 LPPVVPITYADAADLGRLVPADAPHQGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVLDQV 109 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAILRSA AF GI+T R++P ES +A+SASGALE +P+IR+ NL AL++ Sbjct: 110 TDPHNVGAILRSAAAFDALGIVTQDRHAPPESGTVARSASGALETVPWIRVVNLARALEE 169 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF IGL+ + + L Q + +I ++LGAEG+G+R T+ +A L + ++ Sbjct: 170 IAEAGFWRIGLTGHANQTLAQAMGTQRICIVLGAEGEGMRQNTEAHCDELAKLPISPKVE 229 Query: 262 ALNVSN 267 +LNVSN Sbjct: 230 SLNVSN 235 >gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] Length = 349 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK 103 + +++G H+V A L N R I ++ T + + L V+ V + + Sbjct: 109 DDWIWGKHSVFATL-NTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQ 167 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + AVHQG+AL+ A + +LD + N+ + + LD + DPHN+GAI+RSA A Sbjct: 168 LTS-GAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEA 226 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F C GII +R S + +AK A+GALEHIP R+ NL A+ ++ GF +GLS D Sbjct: 227 FDCKGIIIPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDG 286 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYI 275 + P+ + + I +++GAE KG+ TQ+ + + + G +LN S AAA+ Y+ Sbjct: 287 QIPISKFDQKAPIVVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYL 346 Query: 276 T 276 + Sbjct: 347 S 347 >gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] Length = 246 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 12/239 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL RKI ++ +N+ + + D P+ + + + + Sbjct: 4 IEGRNAVYEALR-AGRKIHRIYIKENSSSEIIDDILEMAEKDNIPITRISNKKLSETARS 62 Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ E L + D L ++LD + DPHN GAI+R+A A D Sbjct: 63 HA-HQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGAD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ R + + V+ K+A+GA EHIP +++SN+ A++ + F +G + ++ Sbjct: 122 AVVYQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + AL++G+EG GLR +E + + M G + +LN S AAAV +Y Sbjct: 182 FEADFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQ 240 >gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W] gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. A1055] gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W] Length = 254 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A] gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL2A] Length = 416 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 18/289 (6%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 N +K + + K+S A + + + + S+ S + ++G H+ AAL Sbjct: 107 NRFERKSTNPAYRNKNSQGASSYKREENNEPLSYSESFSKTLS---DDLIWGRHSTEAAL 163 Query: 62 NNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 R I ++ T + +L D V+ V + ++ AVHQG+ L Sbjct: 164 V-GGRAIHRIWCTSELRSTPKFFQLLKDQK-ASGVLVEEVSWSRLGQLT-NGAVHQGIVL 220 Query: 117 ETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + A L +DA + +S LL+ LD + DP N+GAI+RSA A G+I +R S Sbjct: 221 QIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRS 280 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +AK A+GALEH+P R+ NL +L+K+ G+ +GL+ + L + + Sbjct: 281 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPL 340 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++G+E KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 341 VVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 389 >gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 12/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A +R NH K+ QS +++ E + G + V L P+ ++ L ++ A Sbjct: 41 AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSE-AD 99 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131 RL + + VP +D++ +HQG+AL+ P D + Sbjct: 100 ERLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGS 158 Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVA 218 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L G + IGL + L+ D I +++G+EGKGL ++ Sbjct: 219 RATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDE 278 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 279 VVSIPMAGNAESLNASVAAGVVLAEISRQR 308 >gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 252 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+ G H A+L + K+F K+ ++ V +D Sbjct: 8 QQPDFVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAKKQGLVIQRVTKSKLDT 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L A LD + +++LD + DPHN+G+ILR+A A Sbjct: 68 L-SNGQNHQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGSILRTADA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + ++ +AK+++GA+E +P +++SNL +A++++ G G Sbjct: 127 AGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWIFGTDMKG 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + LI+G EGKG+ T++ M + M G I++LN S AA + +Y Sbjct: 187 -TDYRRWDAKGAVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQG 245 Query: 277 QN 278 N Sbjct: 246 YN 247 >gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101] gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens SM101] gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] Length = 289 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63 K K L L R R ++ + N ++ + + + G + V L + Sbjct: 2 TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFAEEEVKVREDLVEGRNAVIELLKS 61 Query: 64 PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I Q+ + ++ ++ A VK V + +D ++ + HQG+ + Sbjct: 62 D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118 Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + K++ GA+EH+ +++N+ +A++++ + G ++ + +I Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGII 238 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282 >gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 245 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKKDTIINYVAKERLDQLSETG 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A +++ + + +LD++ DPHN+GAI+R+A G Sbjct: 65 A-HQGVIAQVAAYEYASVEDILAKAREKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GAL + P +++NL + ++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTNLGHTIDELKEQGMWFVCADMGGET-MY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I +++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 NLNLTGPIGVVIGNEGEGVSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQRL 242 Query: 282 K 282 + Sbjct: 243 Q 243 >gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 317 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 135/283 (47%), Gaps = 20/283 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNN--PSRKIFQ 70 + A+ R H+ +K+ ++ +++ R + N + G + V L+ P+ ++ Sbjct: 36 TPKAEDRVYHQAHKRKKAAQRRASGAHDRRDAFGGNELVVGRNPVVECLHANVPASALYV 95 Query: 71 LLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 T N RL ++ V V Q +D++ G +HQG+ L+ P + Sbjct: 96 AEGTGN-DDRLSEAVHICSSRGISVLEVSRQELDRMTG-NGLHQGIGLQIPPYKYADVHD 153 Query: 129 V-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + L++ LD++ DP N+GA++RS AF G++ +R S S +AV ++++ Sbjct: 154 LIERAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSA 213 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G +P + +N+ AL++ G+Q +GL + + L+ +++G+EGKGL Sbjct: 214 GTAARLPVAKATNMVRALKQFQQNGYQVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 ETA ++ + M +++LN S AA V L + Q K Sbjct: 274 RLVGETADTILSIPMADKVESLNASVAAGVVLSEFARQRRVGK 316 >gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 250 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + + V++VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L D L++LD + DPHN+G+ILR+A A Sbjct: 66 VD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 VDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] Length = 306 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 9/249 (3%) Query: 40 SRHTSQPE-NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +R + P+ + G + V AL P + ++ + T + A P+ Sbjct: 59 TRRANGPDAPELVVGRNPVVEALRAGVPGKALYVVSDTDERIREAVKIAG-DRGIPLLQA 117 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRS 153 +D++ AVHQG+AL+ P + + L++ D + DP N+GAI+RS Sbjct: 118 GRSELDRLTD-GAVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNLGAIVRS 176 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF +G++ +R S +A KS++G L ++P + +NLT L+ G GL Sbjct: 177 AAAFGANGVVIPERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGCFVAGLD 236 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + EI + + L++G+EGKGL ET +A + MPG ++LN AA +A Sbjct: 237 SRGAITVADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIA 296 Query: 273 LYITQNHFA 281 LY A Sbjct: 297 LYEIARRRA 305 >gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23] gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa M23] gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 249 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L +KN+ + V+ V Q +D Sbjct: 3 KKNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 249 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106 LYG H V L I + AR+ V+ + + K+ G Sbjct: 10 VLYGFHAVGVRLKTAPTSILDIYYDASRRDARMRQFIARAQEAGVRLIEADGLRLAKLAG 69 Query: 107 KEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A P+ LD + LL+VLD V DPHN+GA LR A Sbjct: 70 NHG-HQGVAARVQPIELARSLDDLLDDLVGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ + L Sbjct: 129 VIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGELKERNIWCIGTSDDAPQTLY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q AL+LGAEG+G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 189 QSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKGGVESLNVSVASGVCLYEALRQR 247 >gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] Length = 249 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L A+KN+ + V+ V Q +D Sbjct: 3 KKNQWIVGINAVVSSIENDAEHVREVLLEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] Length = 247 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 16/249 (6%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102 + + G ++V+ AL R + ++ T LAR+ A PV+ V + ++ Sbjct: 2 DTSIIAGRNSVTEALK-AGRSVTKIYMTAKKEAPPLARIRTLAK-ERKIPVEFVDNRAME 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ HQ + A + LD V L++ D + D HN+GAI+R+A Sbjct: 60 RLA-PGIRHQDVVALAAAVDFADLDDVLAKVREQGEMPFLVLADGIEDVHNLGAIIRTAE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 I+ +R+S + +AK+++GA+E++P +RI N+T L+++ GF +G Sbjct: 119 CAGVHAILVPQRHSAPINETVAKTSAGAVEYMPVVRIGNVTTTLKQLKKQGFWVLGADMV 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + + L++G+EGKG+ ++ + + M G I +LN S AAA+ +Y Sbjct: 179 GEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVLVRIPMFGRINSLNASVAAALLMYE 238 Query: 276 --TQNHFAK 282 + H K Sbjct: 239 VARKRHREK 247 >gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii C-113] Length = 284 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ ++ L + + + L A L + V + +D++V Sbjct: 31 YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGLKAQPVKREELDELV-PG 89 Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + L LD + LL++LD V DPHN+GA LR+A A G Sbjct: 90 ARHQGVVARCSVQSALTEEGLLAFLDQLGTPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220 ++ K + +AV K ASGA E +P +R++NL ++ + G +G L Sbjct: 150 VVVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGGTHATL 209 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Q Sbjct: 210 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269 Query: 281 A 281 Sbjct: 270 G 270 >gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens ATCC 13124] gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] Length = 289 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63 K K L L R R ++ + N ++ + + + G + V L + Sbjct: 2 TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFAEEEVKVREDLVEGRNAVIELLKS 61 Query: 64 PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + I Q+ + ++ ++ A VK V + +D ++ + HQG+ + Sbjct: 62 D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118 Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + K++ GA+EH+ +++N+ +A++++ + G ++ + +I Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNLWIYGADIAGEEYSYETNFKGACGII 238 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282 >gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] Length = 307 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70 + H N + + + KSR S E + G + V AL + + + Q Sbjct: 30 ARKGHVKNRLANAKAKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 87 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + + A + P +D++ HQGL L+ P + + Sbjct: 88 FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 146 Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 147 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 206 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R++NLT AL+ G +GL++D + + E + + +++G+EGKGL Sbjct: 207 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 266 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 267 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 306 >gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] Length = 278 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 10/258 (3%) Query: 17 DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70 SH + R RD++ +++G H V AAL NP R + Sbjct: 2 SSHSERNDRKRPSAQGRDFRSKPRKQNDFSRGQGDAKDWIWGTHAVEAALANPRRPAPKR 61 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LLAT + RL +L ++ + Q I K + + AVHQGLAL+ T+ + Sbjct: 62 LLATPDRAKRLA--PHLQKLTCLQVMEGQEIAKQLPQGAVHQGLALKIDEPEPLTIAELG 119 Query: 131 NSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++LD + DP NIGAI RSA AF G+I R++P+ S VLAK+A GA++ P Sbjct: 120 TPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVDKAP 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Y R+ NL+ AL+++ G++ + L+ ++++ L+ + + L+LG+EG+G+R E Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVAEHC 239 Query: 249 TSMAHLHMPGIIKALNVS 266 ++ + MPG ++LNVS Sbjct: 240 DALGKIPMPGGFESLNVS 257 >gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. CNEVA-9066] gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Western North America USA6153] gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Kruger B] gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Vollum] gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Australia 94] gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames] gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne] Length = 254 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 103/240 (42%), Positives = 146/240 (60%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + R LYG H V AL N R + +LLAT+NA ARL+ + + V P Sbjct: 39 RPREEGGDGPTVLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRP 98 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 I +++G +AVHQGL LE PL +P LD + LL+ LD + DPHN+GAI+R+A AF Sbjct: 99 SDIGRLLGPDAVHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFG 158 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GI+TT R++P + VLAKSASG LEH+P++ + NL +AL ++ GF +GL SD+ + Sbjct: 159 VAGIVTTARHAPGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPE 218 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ + ++LGAEGKGLR +T+ +A + G I++LNVSNAAA+ LY Sbjct: 219 SLDALTVARPLVIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLYALGR 278 >gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] Length = 253 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + K+ D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISTSAKDKETAKIIDLCRQSGVVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G ++ KP+ Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] Length = 246 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + L+P L + L ++LD + D N GAI R+ Sbjct: 63 MTRK--NHQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S S +A K+++GAL +P R NL + LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA V +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SSC/2] Length = 246 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + G + V AL P KIF L ++ R +K V + ++++ Sbjct: 4 KEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTDAILKFVDKERLNQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A T++ + ++LD + DPHN+GAI+R+A Sbjct: 64 TNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIEDPHNLGAIIRTANLA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + + +AK+++GA+ + P ++++N+ + ++ G D + Sbjct: 122 GAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELKERGMWFACADMDGE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q I L++G EG G+ +E ++ + M G I +LN S AA V + Sbjct: 182 VIYRQ-NLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] Length = 276 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 10/258 (3%) Query: 17 DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70 SH + R RD++ +++G H V AAL+NP R + Sbjct: 2 SSHSERNDRKRPSAQGRDFRSKPRKPNDFSKGQGDAKDWIWGTHAVEAALSNPHRPAPKR 61 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LLAT + RL L ++ + Q I K + + AVHQGLAL+ S ++ + Sbjct: 62 LLATPDRAKRLA--PALQKLSCLQVMEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELA 119 Query: 131 --NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 N L++LD + DP NIGAI RSA AF G+I R++P S VLAK+A GA++ +P Sbjct: 120 ASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVP 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Y R+ NL+ AL+++ G++ + L+ ++++ L++ + L+LG+EG+G+R E Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHC 239 Query: 249 TSMAHLHMPGIIKALNVS 266 + + MPG ++LNVS Sbjct: 240 DVLGKIPMPGGFESLNVS 257 >gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 249 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ G++ V +++ N + + ++L +KN+ + V+ V Q +D Sbjct: 3 KKNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62 Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A + L +DA LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A +I +K S +A + K++SGA + +P I + NL +L+++ GL+ + Sbjct: 122 AAGVTAVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] Length = 233 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +F+YG +T+ A+ RKI+QL N P + V + + +V K+ Sbjct: 1 MFIYGKNTIKEAIK-AKRKIYQLYLDANFKDNSFISFLKLSNQPYQLVDKKKLFDLV-KQ 58 Query: 109 AVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + LD+ Q ++LD ++DPHN+GAILR+ A DG+I + Sbjct: 59 KNHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDGVIMS 118 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K++ +A ++K A GALE++ +SNL + K+ IG S++ + L + Sbjct: 119 KKHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLTKIPC 178 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N +A+I+G EG G+R ++ + + M G I +LNVS A+A+ +Y T Sbjct: 179 NQSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYAT 229 >gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] Length = 265 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S A+ Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHESEV--AL 113 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+ + + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILAKSD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 27/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++ + +K H K R F+ G+ V+ A Sbjct: 1 MNYIQSSQNSTLKEIKALHLKKNR-------------------DSQGLYFVEGIRFVNDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-----VKTVPPQTIDKIVGKEAVHQGLA 115 ++N ++ + + L L+ + L + VP + + K V QG+ Sbjct: 42 IDNG--QVISKVIVSDKLEGLNGGSELIEKVKGVCSDISLVP-EKLFKEVSDTQTPQGIL 98 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + + +++LD + DP N G I+R+A A ++ +K S Sbjct: 99 AVLEKNQFDFQEVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S G++ H+P N+T+ +Q + G++ I K QE + A+I+G Sbjct: 159 VLRSTMGSVFHVPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E G+ +T A S+ + MPG ++LN S AA++ +Y Sbjct: 219 EANGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQ 262 >gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] Length = 250 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++G H L + KI ++ + A + + V++VP +D++ Sbjct: 6 DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKLDRL 65 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L + L D L++LD + DPHN+G+ILR+A A Sbjct: 66 VD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTADAT 124 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR++ ++V+AK+++GA++++P R++NL +++ G+ G + Sbjct: 125 GVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM-AG 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K LI+G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 184 VDYREWNAKGKTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243 Query: 278 N 278 N Sbjct: 244 N 244 >gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 248 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 11/240 (4%) Query: 48 NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 N F+ G H AL + K+F K+ + VP +D++ Sbjct: 6 NDFIIGRHPAVMALKSDQEINKVFIQSGLKSDAISQIIKLAKEKRLVISNVPKTKLDQM- 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+AL A T+D + ++LD + DPHN+G+I+R+A A Sbjct: 65 SDHQNHQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPHNLGSIIRTADAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII +R + ++V+AK+++GA+EH+P R++NL Q++ G G Sbjct: 125 VHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAQELKDRGVWLFGTDMKG-T 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL++G EGKG+ ++ M + M G +++LN S AA++ +Y N Sbjct: 184 DYRRWNAKGAVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNASVAASLLIYQGFN 243 >gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 237 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 11/234 (4%) Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 + V L + I ++L + + PVK + + +D+++ HQG Sbjct: 5 KNVVKQLLQ-DGKTIHEVLIQEGIRDTALENEIRKKQIPVKVLGRKKMDQLL--NGNHQG 61 Query: 114 LALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +A + L+ + + LL++LD + DPHN+GAILR+ DG+I K Sbjct: 62 IAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKH 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +AK ++GA++ + ++NL A++ + G+ +G ++ + + + Sbjct: 122 RNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKKQGYWVVGTDFENSRDYREGQYDV 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 + L++G+EG G+ ++ L M G + +LN S AA + LY Q H Sbjct: 182 PLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRH 235 >gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A R + VK V IDK+ + Sbjct: 4 IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAREFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 254 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] Length = 249 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTID 102 +N ++GV V A+ I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKE-IDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ +P+ P L + LL++LD + D N GAI R+ Sbjct: 62 RITKK--NHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +I+GAE G+ + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYE 239 Query: 276 T--QNHFAK 282 Q F + Sbjct: 240 AVKQRGFGE 248 >gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 254 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] Length = 244 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 10/236 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG +T+ AL + I+ + + R+ + I K+ Sbjct: 7 YIYGKNTILEALK-GEKSIYTVYIQDSIKDNRIIELCKKKKIRIKIIDKSEFIKKL--GN 63 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ E ++D + S LL++LD + DPHN+GAILR+ A DG+ Sbjct: 64 VRHQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGV 123 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ++GA++H+ +++NLT L+ + F +G D+ + Q Sbjct: 124 IIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQ 183 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + +++G+EG G+ ++T L M G + +LN S A AV LY N Sbjct: 184 IDYNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYN 239 >gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi DSS-3] Length = 257 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 93/249 (37%), Positives = 142/249 (57%), Gaps = 7/249 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NP R+ +L+ T NA +L +A + Sbjct: 10 KEQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKLA-EAIDAAGIEPELA 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153 + + +VHQG ALE PL +L V + +++LD V DPHN+GAILRS Sbjct: 69 DARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVILLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ G+ +GL Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYLVLGLD 188 Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + +E + +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 189 GEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQNH 279 +ALY ++ H Sbjct: 249 IALYASKAH 257 >gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] Length = 265 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15] Length = 280 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 8/245 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPP 98 +H + + +LYG H+V AAL + RK+ L + RL +A P+ Sbjct: 13 KHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGVPIHYEAS 72 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRS 153 + +G E+VHQG+AL+ PL + L+ VLD V DPHN+GAI+R+ Sbjct: 73 RWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPNLVFVLDGVEDPHNLGAIVRT 131 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F + K + + S V AK++ GALE +R++NL L++ G+ +GL Sbjct: 132 LGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRGYWVVGLD 191 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 S+ PL Q + + ++LGAEG GLRP T+ T + + +++LNVSNAAAV Sbjct: 192 GASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVSNAAAVTC 251 Query: 274 YITQN 278 Y +N Sbjct: 252 YHLRN 256 >gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 442 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98 T N ++G+H A L + R I ++ T R + L V+ V Sbjct: 145 TPPEHNDLVWGLHASQAILES-ERPIHRIWCTPELRFRSRFLQLLREAKSSGVLVEEVTW 203 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + ++ G AVHQG+ L+TA + L+ + + LLM +D + DPHN+GAI+ Sbjct: 204 ARLAQLCG-GAVHQGIVLQTAAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIV 262 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A G++ +R S + +AK A+GALEH+P R+ NL +L+++ G++ +G Sbjct: 263 RSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVG 322 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+ + L + + + ++ G+EG+GL T+ + + + G+ +LN S A A+ Sbjct: 323 LAEEGSATLAEADLDGPLVVVTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATAL 382 Query: 272 ALYITQNH 279 LY Sbjct: 383 LLYEVARR 390 >gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] Length = 317 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 28/294 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ K H AKL R RD RH + + + G + V L Sbjct: 35 KGPTPKAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECL 82 Query: 62 NN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + P+ ++ T++ RL + P+ V +D++ G +HQG+ L+ Sbjct: 83 HAKVPATNLYIAQGTRS-DERLAEAVAIANARNLPILEVQRHVMDQMTG-NGMHQGIGLQ 140 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + + ++LD++ DP N+GA++RS AF DG+I +R S Sbjct: 141 IPPYKYADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229 S +AV ++++G +P R +N+T +Q+ G+Q +GL + + L+ D + Sbjct: 201 SVTAVAWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPV 260 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 +++G+EGKG+ +E + + M +++LN S AA L + Q A Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQRRVA 314 >gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] Length = 320 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 12/263 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANL 87 ++ + + +R ++YG + V AL P+ I+ T+ + R ++ Sbjct: 59 QERSAGRRPARKDPDATVEWVYGRNPVVEALRAGVPASAIYVAEGTERDPRLREALLLSV 118 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140 + VP Q +D++ VHQGLA++ P D + L++ LD Sbjct: 119 ERGVALLEVPRQELDRLTS-NGVHQGLAIQIPPYEYAHPDDLLRAAYDADQVPLIVALDG 177 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAI RSA AF G++ +R + S SA K+++GA IP R +NL AL+ Sbjct: 178 VTDPRNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALK 237 Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G IGL D + L + + D I L++G+EGKGL +E + + M Sbjct: 238 SYKDAGLFVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSA 297 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 ++LN A VALY + Sbjct: 298 TESLNAGIATGVALYEISRRRTQ 320 >gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 265 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] Length = 259 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 13/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPH--PFPVKTVPPQT 100 ++ E+L +YG + V A + + I +L + A L + V Sbjct: 12 NEEESLVIYGRNAVLEAFRSG-KTIDRLYVQEGVADGTLQSILRTAKKTDAVINFVNKDR 70 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 ++K + HQG+ A ++ + ++VLD + DPHN+GAI+R+ Sbjct: 71 LNKYAEGDK-HQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRT 129 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G+I KR++ +A +A++++GA+ + P +++N++ ++++ G Sbjct: 130 ANQAGAHGVIIPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIWFACAD 189 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + I L++G+EG G+ +E + + M G I +LN S AA V Sbjct: 190 MSGE-LMYNCNLTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLS 248 Query: 274 YITQNHF 280 Y Sbjct: 249 YEIVRQR 255 >gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] Length = 249 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 16/243 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106 G H V A L + + +L + R D A V+ + ++K G Sbjct: 9 GFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLEKHAG 68 Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ P LD S LL++L++V DPHN+GA LRSA A Sbjct: 69 PQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSADAAGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK- 218 +I +R + + V ++A GA E + Y I NL L ++ G +G + + + Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +A+++GAEG GL+ T++ + + M G +++LNVS A V L+ + Sbjct: 187 SLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246 Query: 279 HFA 281 + Sbjct: 247 QRS 249 >gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] Length = 265 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW + + VP + I KI+ + QG+ S A+ Sbjct: 60 ELIVSDQTDLPKDWTVD---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHESEV--AL 113 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+ + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L] gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L] Length = 254 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ A+ Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEVLAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM 1279] gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM 1279] Length = 238 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 11/235 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + V AL ++ Q+ + A L + + +TVP +D++V + Sbjct: 1 MLIYGRNPVLEALREG--RVEQVWVARGVEAWLLKELD-KLGASYQTVPRIQLDQMV-RT 56 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQGL E L L+A LL+VLD + DP N GAI+RSA A G Sbjct: 57 TQHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRNYGAIIRSAFALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++T +R S SA++ K+++G IP +++ N+ L+++ G G S + K + Sbjct: 117 VVTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQGIWVYGTSGKASKTIA 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL++G+EG+G+R E +A + + ++LN + A V LY Sbjct: 177 ELDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAAVALGVVLYQA 231 >gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG] gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF] Length = 314 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70 + H N + + + KSR S E + G + V AL + + + Q Sbjct: 37 ARKGHVKNRLANAKVKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 94 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + + A + P +D++ HQGL L+ P + + Sbjct: 95 FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 153 Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R++NLT AL+ G +GL++D + + E + + +++G+EGKGL Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 273 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 274 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313 >gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 106/242 (43%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQSGVVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ + LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 297 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 148/281 (52%), Gaps = 14/281 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 K + EK + + R + K QSF + + +L+GVH V AAL N + Sbjct: 16 KNRPEKNAGRPHAPEQQRPRQAENAPKPQSFQKSKVNDDG----WLWGVHAVEAALKNVN 71 Query: 66 RK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 R+ +L ++ + V T+ I +++ + AVHQG+AL L Sbjct: 72 RQGPLKLYLSEERTKTIAPALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHGPVLEGV 131 Query: 125 TLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L+++ ++++LD V DP NIGAI RSA AF G++ R+SP VLAK+A+G Sbjct: 132 GLESIMEGGDGVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAG 191 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------DKIALILGA 235 A + +P+ R++NL+ +L+ + G+ ++GL+ + + L + K+ L+LG+ Sbjct: 192 AADRVPFARVTNLSRSLELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLVLVLGS 251 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 EG+GLR E +A + MPG ++LNVS+AA+++LY Sbjct: 252 EGEGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEA 292 >gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] Length = 233 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 58 SAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL N I +L +K A+ + V+ V Q +D++ HQG+ Sbjct: 1 MEALENNQ-TINKLYLSKSLAKNRAQQFRQTAEKNKIVVQEVDNQRLDELT-NHGNHQGI 58 Query: 115 ALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 A+ A LD + N L++LD + DPHN+G+ILR+A A DGII KR + Sbjct: 59 AISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + V+AK+++GA+E++P R+ N+ + + K+ F G + + Sbjct: 119 VQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANFWIFGTDMKGA-DYNDWNADGPV 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A+++G EGKG+ +T++ M + M G +++LN S AAA+ +Y N Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQGFN 226 >gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] Length = 251 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 15/250 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVP 97 ++ E + G + V A + + +L ++ + +A + V Sbjct: 2 EENRNEKFEIEGRNAVMEAFRSGK-TVDKLYLQDGCHDGSINSIVREAKKQETI-INYVS 59 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + ++++ HQG+ A +D + + +LD + DPHN+GAI Sbjct: 60 KEKLNQMSSTGK-HQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A G+I KR + +A + K+++GA+ + P ++++NL + ++ G Sbjct: 119 VRTANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFA 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D + + + + L++G EG G+ +E + + M G I +LN S AA Sbjct: 179 CADMDGE-LMYRCNLTGPMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAG 237 Query: 271 VALYITQNHF 280 V Y Sbjct: 238 VLGYEVVRQR 247 >gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] Length = 265 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] Length = 240 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+E+ +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 254 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ A+ Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] Length = 326 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 21/284 (7%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-------NLFLYGVHTVSAALNNPS 65 K++ + L R +K F+ K + SQ E + +++G H+V AL + Sbjct: 45 KKDKNNTSSSLTRRKPIFKSNTEFSNK-KSKSQEEFTSKKNFDDWIWGKHSVYEALIS-Q 102 Query: 66 RKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 R I ++ T + + L ++ V + ++ A HQG+AL+ A Sbjct: 103 RAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVALQLACS 161 Query: 122 LSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + +L+ + + + +++ LD + DPHN+GAI+RSA AF C GII +R S + Sbjct: 162 KTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTG 221 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L + + +I+G Sbjct: 222 TVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLSNFSEKVPLVVIVG 281 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 282 SEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] Length = 261 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ + LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] Length = 253 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A R + VK V IDK+ + Sbjct: 4 IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] Length = 249 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 15/246 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQ 99 F+ G H AL + I ++ +A++++ A H V VP Sbjct: 2 KNENTDFIIGRHPAVMALKSDQE-INKVFIQSGLKADAISQIVKLAKERHLV-VSNVPKN 59 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D + ++ HQG+ L A T+D + ++LD + DPHN+G+I+R Sbjct: 60 KLDLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII +R + ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 119 TADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 K + +AL++G EGKG+ ++T M + M G +++LN S AA++ Sbjct: 179 DMKG-KDYRTWDAHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLL 237 Query: 273 LYITQN 278 +Y N Sbjct: 238 IYQGFN 243 >gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPH--PFPVKTVPPQTIDK 103 +++ + G H + A L + + ++ K RL+ + ++ +DK Sbjct: 3 KSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQLDK 62 Query: 104 IVGKEAVHQGLALETA-PLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+A E P+L + + N+ L+++LD + DP N+GA LRSA A Sbjct: 63 LSNYQ-THQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGACLRSANA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S S SA++ K+++GA+ I +++NL+ ++ + IGL S + Sbjct: 122 AGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVIGLDSSA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q A+I+G+EG GL+ T+++ +A + M G +++LNVS A + L+ Sbjct: 182 NTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEI 241 Query: 277 QNHF 280 Sbjct: 242 NRQR 245 >gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] Length = 246 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 +N ++G+ V A+ I ++L K+ LA+ + A PV+ VP + ID Sbjct: 3 EKNEMIFGIRAVIEAIEAGKE-IDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERID 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ +P+ P L + L ++LD + D N GAI R+ Sbjct: 62 RITRK--NHQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R +N+ ++ + GF+ I + Sbjct: 120 CAGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274 + + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYK 239 Query: 275 -ITQNHF 280 I Q F Sbjct: 240 AIEQRGF 246 >gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] Length = 255 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 62 RITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 T--QNHF 280 Q F Sbjct: 240 AVKQRGF 246 >gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4] Length = 249 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 14/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTI 101 E+ + G + V A + I +L + + + +A + V + + Sbjct: 2 EESRIVEGRNAVLEAFRSGK-TIDRLFVLEGCKDGPVQTILREAKKSKDTVISFVKKERL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ + HQG+ A LD + L++LD++ DPHN+GAI+R+A Sbjct: 61 DQL-SETGKHQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G++ K + +A +AK+++GA+ + P +++N++ ++++ G + Sbjct: 120 NQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCADM 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG G+ ++ +A + M G I +LN S A V Y Sbjct: 180 -GGTTMYDLNLTGSIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238 Query: 275 ITQNHF 280 Sbjct: 239 EVVRQR 244 >gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] Length = 265 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri DSM 20016] gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 249 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 15/246 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQ 99 F+ G H AL + I ++ +A++++ A H V VP Sbjct: 2 KNENTDFIIGRHPAVMALKSDQE-INKVFIQSGLKADAISQIVKLAKERHLV-VSNVPKN 59 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 +D + ++ HQG+ L A T+D + ++LD + DPHN+G+I+R Sbjct: 60 KLDLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII +R + ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 119 TADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 K + +AL++G EGKG+ ++T M + M G +++LN S AA++ Sbjct: 179 DMKG-KDYRTWDAHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLL 237 Query: 273 LYITQN 278 +Y N Sbjct: 238 IYQGFN 243 >gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL +A + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ + LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 265 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 241 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 14/241 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKI 104 + LYG + V AL + ++ ++L + + A V+ P +D++ Sbjct: 1 MLLYGRNPVMEALKDG--RVSEVLLARGVEEAFVREVKTLAESVGGVRVRFSPRIELDQL 58 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPHNIGAILRSAVAF 157 G HQG+ E + ++D + R L++VL D + DP N GAI+RSA Sbjct: 59 AGTTQ-HQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPRNFGAIIRSAEVL 117 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ Sbjct: 118 GAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAEGVWVYGAAGEAA 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L + + K+AL++GAEG+G+R +E + + + G +++LN S AA + LY Sbjct: 178 QELGKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEAT 237 Query: 278 N 278 Sbjct: 238 R 238 >gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis] gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis] Length = 229 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 132/229 (57%), Gaps = 7/229 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 1 YYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-EN 56 Query: 109 AVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 +HQG+A + P+ S L+ ++N + + +LD + D NIGAI+RSA AF + II Sbjct: 57 QIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILP 116 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + ++ Sbjct: 117 QDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLI 176 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 177 SDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225 >gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 418 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 29/296 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY---------GVH 55 S + ++ + RN+ F+Q ++ +P+ F++ G H Sbjct: 103 SSSNKRQPNLVQSRRFTSFSRNN-----QNDFSQSTQEIEKPKQNFVFESESNDIFWGRH 157 Query: 56 TVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + A L + R I ++ T +L DA V+ V + + V Sbjct: 158 STQAILESG-RAIHRIWCTSEIRSSPRFFQLLKDAK-ALGVLVEEVSWARLGHVT-TGGV 214 Query: 111 HQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+AL+TA + L ++ S +L+ LD + DP N+GAI+RSA A G+I Sbjct: 215 HQGIALQTAASETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALGAHGLI 274 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R S + +AK A+GALEH+P R+ NL +L+++ G+ IGL+ + K + + Sbjct: 275 LPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDKTINEI 334 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + L +G+E KGL T+ + + + G+ +LN S A +V LY Sbjct: 335 TFDGPLVLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQ 390 >gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 246 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ + + V + +D++ Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVKTITREARKQDTIINYVAKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + L +LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIAFAAAYKYAEVEDILELAREKGEPPFLFILDGIEDPHNLGAIIRTANQA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + ++ +AK+++GA+ + P +++N++ ++++ G + + Sbjct: 123 GAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNISATIEELKEKGLWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G+EG G+ +E +A + M G I +LN S AA V Y Sbjct: 183 -LMYRMNLKGPIGLVIGSEGDGVSRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025] gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++R T+ E ++L+G+H V AL NPSR+ +L+ TKNA RL +A + V Sbjct: 13 KERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLG-EAVAAGGIEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ + L+++LD V DPHN+GA+LR Sbjct: 72 DPRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F ++ R+S E+ LAK+ASGALE PY+R+ NL + ++++ + G+ +GL Sbjct: 132 SAEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGL 191 Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S++ L + + + L+LGAEG GLR KT++T + + G +LNVSN Sbjct: 192 DSEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249 >gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L + V+ V + ++++ + Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFVLDGCHDGPVNSIMREARKKDTLVQYVSKERLNQL-SQT 63 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A T++ + +++LD + DPHN+GAI+R+A G Sbjct: 64 GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R + +A +A++++GAL + P +++NLT ++ + G + D +K + Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCADMDGQK-MY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I +++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 QLNLRGPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQR 241 >gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] Length = 265 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] Length = 255 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 15/247 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 62 RITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 T--QNHF 280 Q F Sbjct: 240 AVKQRGF 246 >gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] Length = 265 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYMVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILTKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 254 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 19/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +++KK+ + + + + G H V AL + + + Sbjct: 2 KRIQSTKNPQV-------KEWKKLLTKKGQEKM----GLFLIEGFHLVEEALKSHA-PLV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + W+A PV V + + I E QG+A +D Sbjct: 50 ELIVDEKKEIPPSWNAG---HLPVTIVTEEVMKAISDTE-TPQGIAAVCEQFSYGDIDWT 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + ++++D V DP NIG ++R+A A D +I + + + + ++ G+L H+P Sbjct: 106 QAN--VLLIDAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPI 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 IR NL + ++++ G + ++ + AL++G EG G+ K + T Sbjct: 164 IR-GNLREWIERLCEKNVAIYGTALENGEDYRHIKPARPFALLVGNEGSGVHKKLLQMTT 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY Q Sbjct: 223 KNLYIPIYGQAESLNVAVAAGILLYHLQ 250 >gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R] Length = 246 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + A PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD + D N GAI R+ Sbjct: 63 ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYE 239 >gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] Length = 265 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKREK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] Length = 247 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V AL I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ A L P L + ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] Length = 265 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] Length = 250 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 11/251 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + Q + G + V A + P K+F L ++ R H ++ V Sbjct: 2 KEDKQINENIIEGRNAVLEAFRSGKPIDKLFVLDGCQDGPIRTIVREAKKHDTILQFVTK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + + +I + HQG+ A ++ + L++LD++ DPHN+GAI+ Sbjct: 62 ERLSQI-SETGRHQGVIAYAAAYEYADVEDMLKLAESKGEDPFLILLDNIEDPHNLGAII 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR + +A +AK+++GAL + P +++NL ++ + G + Sbjct: 121 RTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMESLKEKGLWFVC 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + I LI+G EG+G+ +ET A + M G I +LN S AA V Sbjct: 181 ADMGGEE-MYDLNLTGPIGLIIGNEGEGVSRLVKETCDFTARIPMNGDIDSLNASVAAGV 239 Query: 272 ALYITQNHFAK 282 Y K Sbjct: 240 LAYEIVRQRRK 250 >gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 247 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V AL I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ A L P L + ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 246 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L S ++LD + D N GAI R+ Sbjct: 63 ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYE 239 >gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 255 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 11/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA--TKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106 LYG+H VSAAL+ + ++ +L + A R+ PV+ + + + Sbjct: 6 LYGIHAVSAALD--AEELLELWVAVERRADERIAPLVQKAAEQRLPVQEWRSVALGRKLN 63 Query: 107 KEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ +A + L+VLD V DPHN+GA LRSA A D + Sbjct: 64 TDR-HQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A + K+++G+ +P ++NL+ L + GF +G++ + + L Sbjct: 123 ILPRDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYA 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G E KGLR T+E +AH+ M G I++LNVS A + L+ Sbjct: 183 LDLDMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQR 240 >gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI] gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 254 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V L + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEVLKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 251 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 21/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K++ + +KK+ +K R + L G H V A+ + + + Sbjct: 2 KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + W+ PV V + I E QG+A L + L+ V Sbjct: 50 ELIVDERTAVPPGWNVT---GVPVTIVTEAVMRAISSTE-TPQGIAAVCRKLPAE-LEGV 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++D V DP N+G ++R+A A D +I + + + + ++ G+L H+P Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L + + G G + ++ ++ A+++G EG G+RP T Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTT 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY Q Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC 35896] Length = 242 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 113/241 (46%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + +K++ R +K ++++ + Sbjct: 3 IEGRNAVLEALKKEI-PLDVIYVSKDSKEGSIRKIISMAKEKKIILKQTDRMKLEQMT-E 60 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ T T++ + + L++LD + DPHN+GA++RSA D Sbjct: 61 TAAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVD 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S + +A + K+++GA+ ++ R++N++ ++ + + GL D + Sbjct: 121 GVILPKRRSATVNATVEKTSAGAVSYMKVARVTNISQTIELLKKENYWVYGLDMDGTE-Y 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + IA+++G EGKG+ ++ + + M G I++LN S A +V L+ Sbjct: 180 TQNDWSGNIAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239 Query: 281 A 281 Sbjct: 240 G 240 >gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 313 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 20/280 (7%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69 A++R+ H+ + S +++ P + G + V AL P+ ++ Sbjct: 35 AEMRKGHKKNRLATSRAKQATRRPAPRGRGGRSTSELVVGRNPVVEALREGVPANTLYVQ 94 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 Q + + A + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153 Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 VSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + + + + + +++G+EGKGL Sbjct: 214 TAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY T A Sbjct: 274 RLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313 >gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii SL3/3] Length = 297 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 20/276 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNA 77 R +++KKM+ NQ R E +YG + V+ L + S L+A A Sbjct: 21 RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80 Query: 78 LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 A + L VK V P + + G E+ HQG+A + + T++ + Sbjct: 81 PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++N+ + ++++ G D L + IAL+LG+EG G+ ++ Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLC 258 Query: 249 TSMAHLHM--PG-IIKALNVSNAAAVALYITQNHFA 281 + L M PG + + NVS AA + LY Q+ A Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 246 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 11/237 (4%) Query: 53 GVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G + V A + K+F L ++ + + V + +D++ G Sbjct: 10 GRNAVLEAFRSGKTIDKLFILDGCQDGPIKSIVREAKKTDAIINYVDKERLDRLAGT-GH 68 Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A +D + + +LD + DPHN+GAI+R+A G+I Sbjct: 69 HQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPHNLGAIIRTANLAGAHGVI 128 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A +AK+++GA+ + P +++N++ ++++ G + + + Sbjct: 129 IPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQGLWFVCADMGGET-MYNL 187 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ ++ +A + M G I +LN S AA V Y Sbjct: 188 NLKGPIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 265 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGGFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 255 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105 L G H V A L + + R A + + + K+ Sbjct: 4 MLVGFHVVQARLRVDPNSLKSVYFDSGRRDRRMGDFLKQAEEILGERLHAADAERLHKLT 63 Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ + + +++ L ++LD V DPHN GA LR A Sbjct: 64 GHDR-HQGVVALAEKMAIVRTITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D + K S S +A ++K + GA E +P I ++NL ++++M G IG ++ Sbjct: 123 GVDAAVIPKDRSASINATVSKVSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGTDDEAT 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + IA+++GAEG+G+R T+ET + + M G++ +LNVS A+ V LY Sbjct: 183 KSIYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVL 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M] gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M] Length = 1056 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 5/238 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 Q N+ +YG + + A+ RKI+QL + L H + V + + Sbjct: 815 ERKQIINMIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFL 873 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFS 158 + K+ HQG+A LD +S Q ++LD +NDPHN+GAILR+ A + Sbjct: 874 YDLT-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACA 932 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I +K++ ++ +AK + GALE+ ++NL + K+ +G S+S + Sbjct: 933 LDGVIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQ 992 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q KN +A+I+G EG G+R ++ + + M G I +LNVS AAA+ +Y T Sbjct: 993 SFHQIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIYST 1050 >gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] Length = 265 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I SL++ + +KK+Q+ ++ + F+ G H V AL Sbjct: 13 KNIDSLQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VAV 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW + + VP + I K++ + QG+ +D Sbjct: 60 ELIVSDQTDLPKDWTVS---DVEMYIVP-EAIVKVLRETETTQGVFA-VCEKHEKEVDLT 114 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 115 DGK--FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKEKNVPVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] Length = 246 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ + I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 63 FTRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 261 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL DA + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ + LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ +GL Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ L + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249 >gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 311 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 13/277 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLL 72 ++ +++ K ++ ++ ++ + + G ++V AL P+ ++ Q + Sbjct: 36 EARKGHVKQRAAQAKSRRAQSRTKGPRAKGTSELVVGRNSVVEALREGVPASTLYVQQFI 95 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130 + + A + P +D++ HQGL L+ P + + Sbjct: 96 DSDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLAAA 154 Query: 131 -----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++ LD V DP N+GA++RS AF G++ +R + +A K+++GA Sbjct: 155 AADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGAAA 214 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKT 244 P R +NLT AL+ G +GL++D + L + E +A+++G+EGKGL Sbjct: 215 RTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLSRLV 274 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 275 GETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRRS 311 >gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 251 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 117/268 (43%), Gaps = 21/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K++ +KK+ + + + L G H V A+ + + + Sbjct: 2 KRIESPKNARVKH-------WKKLLT----KKGREETGCFLLEGFHLVEEAVKSQA-PLV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + WD + PV V + I E QG+A + Sbjct: 50 ELIVDERTTIPPGWDVS---DVPVVIVTETVMKAISSTE-TPQGIAAICRQRPH----EL 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++D V DP N+G ++R+A A D +I + + + + ++ G+L H+P Sbjct: 102 TGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ ++ + + ++ G G + ++ ++ AL++G EG G+R + E T Sbjct: 162 VK-GDVAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTT 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY Q Sbjct: 221 ENVYIPIYGQAESLNVAVAAGILLYSLQ 248 >gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 240 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + N + + +LD + D NIG I+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGTIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] Length = 257 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 117/274 (42%), Gaps = 21/274 (7%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + + I S+++ + +KK+Q+ ++ + F+ G H V AL Sbjct: 3 RMKNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--V 49 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 I +L+ + DW + VP + I K++ + QG+ + Sbjct: 50 ITELIVSDQTDLPKDWTVT---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---E 102 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++LD + DP N+G I+R+A A ++ + + ++ + +S G++ H+ Sbjct: 103 IALTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHL 162 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P ++ NL + + K+ G S ++ P + ALI+G EG G+R + Sbjct: 163 PIVK-GNLEEWVDKLKEKNVPVYGTSLENGIPYGEVTPTGSFALIVGNEGNGVRLEILTK 221 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 222 CNQNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 255 >gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] Length = 247 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + R + + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ A L+ LD + S LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++KK L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +A+++GAEG+G+R T +T + + M G +++LNVS A+ V L+ A Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 316 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 20/283 (7%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNN--PSRK 67 K + A+ R H +++ + +++ RH + G + V L+ P+ Sbjct: 34 RKATPKAEDRTYHPAHRRKKEAERRASGAHNRHERADAVELVVGRNPVVECLHANVPATA 93 Query: 68 IFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 ++ TKN RL + V V Q +D++ G +HQG+ L+ P Sbjct: 94 LYVAEGTKN-DERLSEAVHTCADRGISVLEVSRQELDRMTG-NGMHQGIGLQIPPYKYTE 151 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 ++ + +++ LD++ DP N+GA++RS AF G++ +R S S +AV + Sbjct: 152 VEDLIESTANAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWR 211 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++G +P + +N+ L++ G+Q +GL + L+ + +++G+EGK Sbjct: 212 TSAGTAARLPVAKATNMVRTLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPVVIVVGSEGK 271 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 GL ET ++ + M +++LN S AA V L + Q Sbjct: 272 GLSRLVSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQRR 314 >gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 248 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVG 106 +YG H++++ + + + + ++ AR+ L + +D ++ Sbjct: 6 IIYGFHSITSRIRLDASSVKDVYLDESRNDARMADLLKLIKENDIAFHLSSKDRLDGMI- 64 Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + + LL++LD V DPHN+GA R A A Sbjct: 65 PSSKHQGVIANIFESKQKYVTIEDVLEEVTSEPPLLLILDGVEDPHNLGACFRVADAMGV 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 II K + +A + K A G E +P+I ++N+ ++ + G IG ++K Sbjct: 125 HAIICPKDSAVGVNATVRKVACGGAESVPFIAVTNIGRTIRTLKDQGLFIIGTDGEAKHN 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L QE IA++LG+EGKG+R T+E S+ + M G +++LNVS A+ + L + Sbjct: 185 LYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQ 244 Query: 280 FA 281 + Sbjct: 245 RS 246 >gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] Length = 314 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70 + H N + + + KSR S E + G + V AL + + + Q Sbjct: 37 ARKGHVKNRLANAKAKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 94 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + + A + P +D++ HQGL L+ P + + Sbjct: 95 FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 153 Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R++NLT AL+ G +GL++D + + E + + +++G+EGKGL Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLSR 273 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 274 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313 >gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 249 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ ++++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLEKLAGL- 66 Query: 109 AVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPYPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + IG D P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] Length = 297 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 20/276 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNA 77 R +++KKM+ NQ R E +YG + V+ L + S L+A A Sbjct: 21 RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80 Query: 78 LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 A + L VK V P + + G E+ HQG+A + + T++ + Sbjct: 81 PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++N+ + ++++ G D L + IAL+LG+EG G+ ++ Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLC 258 Query: 249 TSMAHLHM--PG-IIKALNVSNAAAVALYITQNHFA 281 + L M PG + + NVS AA + LY Q+ A Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] Length = 314 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 13/279 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70 ++ H + N + + Q+ R + + + G + V AL P+ ++ Q Sbjct: 37 MRKGHAKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYVQQ 96 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 + + A + P +D++ HQGL L+ P + + Sbjct: 97 FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155 Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 156 AAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 215 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R +NLT AL++ G +GL++D + L + + + +++G+EGKGL Sbjct: 216 AARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGLSR 275 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 276 LVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314 >gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2083] gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 94/253 (37%), Positives = 145/253 (57%), Gaps = 9/253 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + E ++L+G+H V AL NP R +L+ T+NA+ +L Sbjct: 5 KWVVKKEQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSELE 64 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146 P + P+ + + ++VHQG ALE PL L+ V ++LD V DPHN Sbjct: 65 P-EMCEPRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAILRSA F +I T R S E+ LAK+ASGALE PY+RI NL ++++ + G Sbjct: 124 VGAILRSAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMG 183 Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + IGL ++++ ++ + ++ IAL++GAEG GLR KT++T ++ + G +L Sbjct: 184 YLVIGLDGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSL 243 Query: 264 NVSNAAAVALYIT 276 NVSNAAAVALY + Sbjct: 244 NVSNAAAVALYAS 256 >gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium vanbaalenii PYR-1] Length = 314 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 13/252 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKT 95 RH + + G + V L P+ ++ L ++ RL + + Sbjct: 62 GRHKKTDDTEIVLGRNPVLECLRAGVPATALYVALGA-DSDERLTESVQIAADKGIAILE 120 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP +D+I +HQG+AL+ P D + LL+ LD+++DP N+G Sbjct: 121 VPRHDLDRIAA-NGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLG 179 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF G++ +R S S +AV ++++GA P R +NLT AL++ G Q Sbjct: 180 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQ 239 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D ++Q I +++G+EGKGL +E ++ + M G ++LN S A Sbjct: 240 VVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 299 Query: 269 AAVALYITQNHF 280 A V L Sbjct: 300 AGVVLAEIARQR 311 >gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 258 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 12/251 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 ++ L + G + V A + K+F L ++ R H + V + Sbjct: 10 EETKEHTLVIEGRNAVLEAFRSGRTIDKLFVLDGCQDGPVRTIVREAKKHGTILNFVGKE 69 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 + ++ + HQG+ A +D + L+VLD + DPHN+GAI+R Sbjct: 70 RLSQLT-QTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGEDPFLIVLDGIEDPHNLGAIIR 128 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A +AK+++GAL + P +++NL ++++ G + Sbjct: 129 TANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGIWFVCA 188 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D + + I L++G EG G+ +E +A + M G I +LN S A V Sbjct: 189 DMDG-QSMYDMNLTGPIGLVVGNEGDGVSRLVKENCDFVASIPMKGEITSLNASVAGGVL 247 Query: 273 LYI-TQNHFAK 282 Y + AK Sbjct: 248 AYEIVRQRLAK 258 >gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces hygroscopicus ATCC 53653] gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces himastatinicus ATCC 53653] Length = 317 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 121/274 (44%), Gaps = 13/274 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATK 75 +AK R + ++ R ++ N + G + V AL P+ ++ Q + + Sbjct: 45 HAKQRIANARTRQAAKRPAPRRGGAKGTNELVVGRNPVVEALREGVPANTLYVQQFIDSD 104 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 + + A + P +D++ HQG+ L+ P + + Sbjct: 105 DRVREGLKIAADRGGIHLMEAPKAELDRMT-NGLNHQGMVLQVPPYDYAHPEDLSAAAFD 163 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G P Sbjct: 164 DGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQET 247 R +NLT AL+ G +GL++D + L+ E + + +++G+EGKGL ET Sbjct: 224 VARATNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVIVVGSEGKGLSRLVGET 283 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + MPG ++LN AA V LY + Sbjct: 284 CDFRVRIPMPGGAESLNAGVAAGVVLYEASRRRS 317 >gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] Length = 247 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD + D N GAI R+ Sbjct: 63 ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 240 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + +HQG+A + P+ S L+ + N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQIHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+E+ +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] Length = 326 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 19/283 (6%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSF-NQKSRHTSQ---PENL--FLYGVHTVSAALNNPSR 66 K++ + L R +K F N+KS++ + +N +++G H+V AL + R Sbjct: 45 KKDKNNTSSSLTRRKPIFKSNTEFSNKKSKYQEEFTSKKNFDDWIWGKHSVYEALIS-QR 103 Query: 67 KIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 I ++ T + + L ++ V + ++ A HQG+AL+ A Sbjct: 104 AINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVALQLACSK 162 Query: 123 SPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + +L+ + + + +++ LD + DPHN+GAI+RSA AF C GII +R S + Sbjct: 163 TISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGT 222 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L + + +I+G+ Sbjct: 223 VAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLSNFSEIVPLVVIVGS 282 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 283 EDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 265 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGKVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] Length = 324 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 21/288 (7%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + ++I + + + Y R+ R +++ ++R + L G + V AL Sbjct: 39 EKQRIKAAERAQYLATRK-VRVVEELPGATVRARD----GSELLIGRNPVVEALRAKVPA 93 Query: 68 IFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK----EAVHQGLALETAP 120 + LL+ + R+ A L + V +D+ + +A HQGL L+ P Sbjct: 94 VRLLLSNSLDPDERITEAARLAGQQGIAIAEVARPELDRRCERLGLPKAAHQGLILQVEP 153 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 T D + + L++ LD V DPHN+GAI RSA AF G++ +R + + Sbjct: 154 YEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGVT 213 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232 K+++G L IP ++ NLT L++ GF GL +D PL+Q E+ + ++ Sbjct: 214 TAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPLDQWELATEPSVVV 273 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKGL +ET + + + G +++LN S AA VALY Sbjct: 274 VGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRR 320 >gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] Length = 265 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ A+ Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 113 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 246 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ + I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 63 FTRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1] Length = 246 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ R H V V + +D++ Sbjct: 4 EELKIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVHFVEKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + L +LD++ DPHN+GAI+R+A Sbjct: 64 -SETKKHQGVIAVAAAYEYAEVEDMLKLAEEKGEPPFLFILDNIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+ + P +++NLT ++++ G + D Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCADMDG- 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I L++G+EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 182 TCMYDLDLKGPIGLVIGSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHFAK 282 + Sbjct: 242 RQRMR 246 >gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22] gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22] Length = 313 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 20/280 (7%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69 A++R+ H+ + + +++ P + G + V AL P+ ++ Sbjct: 35 AEMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVVGRNPVVEALREGVPASTLYVQ 94 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 Q + + A + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153 Query: 130 RNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 N+ L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 ANAAYDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + E E + +++G+EGKGL Sbjct: 214 TAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA V LY A Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 313 >gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] Length = 246 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ + I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAVQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + S GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1] gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1] Length = 233 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 11/229 (4%) Query: 58 SAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 L N I +L +K A+ + V+ V Q +D++ HQG+ Sbjct: 1 METLENNQ-TINKLYLSKSLAKNRAQQFRQTAEQNKIVVQEVDNQRLDELT-NHGNHQGI 58 Query: 115 ALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL A LD + N L++LD + DPHN+G+ILR+A A DGII KR + Sbjct: 59 ALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + V+AK+++GA+EH+P R+ N+ + + K+ F G + + Sbjct: 119 VQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANFWIFGTDMKG-TDYTDWNADGPV 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A+++G EGKG+ +T++ M + M G +++LN S AAA+ +Y N Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFN 226 >gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 240 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SS3/4] Length = 248 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 12/246 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + ++F L ++ R H V VP + +D + Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVRTIVREAKKHDTIVNFVPKERLDSM 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + L +LD + DPHN+GAI+R+A Sbjct: 64 -SETGHHQGVMAYAAAYEYAEVEDILKIAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +A++++GAL + P +++N+ ++ + G + + Sbjct: 123 GAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNMAATIEDLKKRGIWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-T 276 + + I L++G EG+G+ +E +A + M G I +LN S A V Y Sbjct: 183 -SMYRLNLTGPIGLVIGNEGEGVSRLVKEKCDMIASIPMKGDIDSLNASVATGVLAYEIV 241 Query: 277 QNHFAK 282 + AK Sbjct: 242 RQRLAK 247 >gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] Length = 248 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98 EN ++G+H++ A+ R I ++ ++ L + + + P + VP Sbjct: 2 QKRVKENKMIFGLHSIIEAIE-AGRDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPV 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + ++ E HQG A + PTL + L++ LD V D N GAI Sbjct: 61 EKLNSFT--EKNHQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAIS 118 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ D I+ S + +A K+++GAL ++P R NL A++ + + GF I Sbjct: 119 RTCECAGVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIA 178 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LS + + + L+LGAE +G+ + S + + G I++LNVS AA + Sbjct: 179 LSEKANIAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGI 238 Query: 272 ALYIT 276 +Y Sbjct: 239 VIYEA 243 >gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] Length = 231 Score = 234 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%) Query: 61 LNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + ++ +L + RL L H ++ + +D V A HQG+ Sbjct: 2 LKSAPGRVRELHVQRGRQDDRLQKIHKLAEQHGVTLQWATVKNLDDKV--NARHQGVIAL 59 Query: 118 TAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 L +++ N L +VLD V DPHN+GA LRSA ++ K S Sbjct: 60 CEEGQTHDEAFLLESMEKHGNKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSV 119 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + V+ K A GA E +P + ++NLT L+K+ G +G + ++++ + + Sbjct: 120 GLTPVVQKVACGAAESVPLVMVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLV 179 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEGKG+R T++ +A L M G + +LNVS A V L+ Sbjct: 180 LVMGAEGKGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229 >gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987] Length = 254 Score = 234 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKVG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP ++I K++ + QG+ A+ Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-ESIVKVLRETETTQGVFAVCEKHEKEV--AL 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] Length = 237 Score = 234 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 6/235 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YGV V L + R + ++L + R V+ VP + ++ G Sbjct: 3 EVVYGVRPVIEVLRSRRRAVHEVLDSTG--NREVERLAADAGVGVRRVPRGRVARLAGGG 60 Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 A HQG+A P L+ V + L+ VLD V DP N+GA+LR+A + G++ K Sbjct: 61 A-HQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVPK 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + K+++GA EH+ R++NL A+ +M G + + + Sbjct: 120 DRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLWVYAAEPGGEN-YAEADLS 178 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LG+EG+G+R +E + + M G + +LNVS AAA+ LY + Sbjct: 179 GPVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQRG 233 >gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324 Length = 309 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%) Query: 23 LRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79 LR NH K+ QS + + T + E + G + V L P+ ++ L T+ Sbjct: 43 LRPNHPAAKRNQSSPHRPVKRTDETETVL--GRNPVLECLRAGVPATALYVALGTE-VDK 99 Query: 80 RLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131 RL V VP +D+I +HQG+AL+ P D + Sbjct: 100 RLTESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AFS GI+ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT AL+ G + IGL D L+ D +A+++G+EGKGL + + + Sbjct: 219 ATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S A V L Sbjct: 279 VSIPMAGQVESLNASVAVGVVLAEIARQR 307 >gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] Length = 237 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 12/236 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG + V ++ + +L+ + + PV+ + + +V + Sbjct: 3 EWIYGKNVVKQSIEEG--MVLKLILQRKEDP--LFVLAQEKQIPVEILDRHKMTSLVKSD 58 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+A + +++ + L+++LD + DPHN+GAILR+ A DG+ Sbjct: 59 R-HQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGV 117 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK + GA++ + ++NL+ ++ + G+ +G + + K Sbjct: 118 IFKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLKKRGYWVVGTAMEGK-DYRS 176 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++G EGKG+ + HL M G I +LN S + + LY N Sbjct: 177 LKYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIYN 232 >gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 126/245 (51%), Gaps = 14/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRK--IFQLLAT--KNALARLDWDAN--LPHPFPVKTVPPQTID 102 ++L+G + + L +K I ++L T KN L+ + ++ VPP+ + Sbjct: 1 MYLHGRNVLREILKLEPKKLKIKKVLFTDQKNVDRELEELKEHTAKKGYRMEVVPPEKLF 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + +E HQG+ + +L+ + + LL++LD + DPHN+GAI+RS+VA Sbjct: 61 NL-SREKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDPHNLGAIIRSSVA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I T++ S + + K ++G + IP +R+ N+ ++ + GF T + + Sbjct: 120 AGADGVIITEKASVEVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKEEGFWTYAATMEG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P DK ALI G EGKG+R ++ + + + M I +LNV+ +AA+ L+ Sbjct: 180 E-PYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEY 238 Query: 277 QNHFA 281 + +A Sbjct: 239 RRQWA 243 >gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] Length = 255 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 + + L + G + V A + P K+F L ++ R H + V Sbjct: 5 RKEFDNTEHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPVRTIVREAKKHDTIINFV 64 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 + + +I HQG+ A ++ + L++LD++ DPHN+GA Sbjct: 65 GKERLSQISVTGK-HQGVIAYAAAYEYSEVEDMLKLAEERGEDPFLILLDNIEDPHNLGA 123 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A G+I KR + +A +AK+++GAL + P +++NL ++++ G Sbjct: 124 IIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWF 183 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + + I L++G EG+G+ +E +A + M G I +LN S AA Sbjct: 184 VCADMGGE-SMYRLNLKGPIGLVIGNEGEGVGRLVKEKCDFVASIPMKGEIDSLNASVAA 242 Query: 270 AVALYITQNHF 280 V Y Sbjct: 243 GVLAYEIVRQR 253 >gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] Length = 254 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 11/251 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96 R + +YGV+ V AAL KI K + + V+T Sbjct: 3 RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMNNYGIKVQTA 62 Query: 97 PPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAI 150 T+D+I VHQG+ +E T P L+ + + +VLD V DP N+GA Sbjct: 63 MRHTLDEITD-NGVHQGVVIEMVATPPKNEGDLEELLDTLENPFFLVLDGVTDPRNLGAA 121 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA A G+I K S S S K+ASGA + +P ++NL L+ + + I Sbjct: 122 MRSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVRVI 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G+ ++ + +A+++G+E G+R T+E + + M +++LNVS AA Sbjct: 182 GMDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAG 241 Query: 271 VALYITQNHFA 281 +AL+ + Sbjct: 242 IALFEAVRQRS 252 >gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] Length = 365 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 19/292 (6%) Query: 5 SKKKSEKIFSLKDS--HYAKLR-RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVS 58 SK +K + S H K R +R + + SR S E+ +YG H V Sbjct: 47 SKPDWQKGDRPRKSSDHLGKSRVEGNRIRQSFSRDHLDSRFESIDEDTSPDLIYGRHAVE 106 Query: 59 AALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AA+ R + +L ++ R + V V + ++ + A HQG+ Sbjct: 107 AAIE-AGRSLNRLWVNAKLHYDSHFRPLIATAKANGSVVDEVENVRLSQMT-QGASHQGI 164 Query: 115 ALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + L+ + +++ D + DPHN+GAI+RSA A GI+ +R Sbjct: 165 VAQVSAYEYVDLEVLVQQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQR 224 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ +AK ++GALE+IP R+ NL AL+ + S F GL++++ + + + Sbjct: 225 RAVGVTSTVAKVSAGALENIPIARVINLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSA 284 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++GAEG GL Q + + + G +LN S A +ALY Sbjct: 285 PVVLVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQ 336 >gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] Length = 265 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ S + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 22/283 (7%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 + A+ R+ H+ Y+ + +++ R + ++ + G + V AL + Sbjct: 36 TPRAEDRKGHKAYRVSNAMARQAAKRKPVARRGGKGQSEMVVGRNPVFEALRDGV-PAST 94 Query: 71 LLATK--NALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 L + + R+ NL + P +D++ HQGL L+ P Sbjct: 95 LYVQQFIDNDERVREALNLATGRGNIHIMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAH 153 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + + + L++ LD V DP N+GA++RS AF G++ +R + +A K Sbjct: 154 PEDLVTAAFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWK 213 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEG 237 +++G P R +NLT L++ G +GL++D + + + E + +++G+EG Sbjct: 214 TSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHELEELGGPVVIVVGSEG 273 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KGL ET + + MPG ++LN AA V LY Sbjct: 274 KGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 316 >gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] Length = 274 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 141/248 (56%), Gaps = 8/248 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G H V AL NP R +L+ T NA +L DA + Sbjct: 27 KEQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLG-DAVAEAGMEPEIS 85 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL L+ V + L++LD V DPHN+GAILR Sbjct: 86 DPRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILR 145 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I T+ ++ E+ LAK+ASGALE PY+R NL D + + G+ +GL Sbjct: 146 SAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGL 205 Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +++ +E + ++ IAL+LGAEG GLRPKT+ET ++ + +LNVSNAA Sbjct: 206 DGEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAA 265 Query: 270 AVALYITQ 277 AVALY + Sbjct: 266 AVALYAVR 273 >gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] Length = 264 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 95/260 (36%), Positives = 141/260 (54%), Gaps = 11/260 (4%) Query: 27 HRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R KK +K R S + ++L+G+H V AL NP R+ +L+ TKNA +L Sbjct: 3 PRSKKKPLWIVEKERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLS-S 61 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLD 139 + + + + P+ + + ++VHQG ALE PL + V L++LD Sbjct: 62 SIITSGIDAEIIDPRKFNPPIDPQSVHQGAALEVMPLDWGNMSTVCAPRNDKKARLVILD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DPHN+GAILRSA F +I T R S E+ LAK+ASGALE PY+R+ NL ++ Sbjct: 122 RVTDPHNVGAILRSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSI 181 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + G+ +GL +K ++ +N +A++LGAEG GLR T++T + + Sbjct: 182 KSLQEMGYYVVGLDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDY 241 Query: 257 PGIIKALNVSNAAAVALYIT 276 +LNVSNA AVALY T Sbjct: 242 AATFGSLNVSNATAVALYAT 261 >gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1] gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1] Length = 254 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ A+ Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 253 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V ALN+ S +I ++ TK+ + VK V IDK+ K Sbjct: 4 IEGKNPVKEALNS-STQITEVYISNTTKDKSISEIINLCKQKGIVVKFVDKSKIDKM-SK 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DPHN G+I+RSA Sbjct: 62 TKNPQGVIAIAQEYKYWDIDDLLLEAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GIIT R S + + K+++GA+EHI R+ NL + + G ++++K + Sbjct: 122 GIITEARNSCPITPTVEKASAGAIEHIKVARVVNLRRTIDSLKEKGVWVYAADNNAEKFV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I +I+G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YDCDFKIPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 + Sbjct: 242 MQ 243 >gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4] Length = 281 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 20/276 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN + +K ++I S+K+ + +KK+ + + + + G H V A Sbjct: 24 MN-VKEKSMKRIDSVKNEQV-------KGWKKLHTKKGRDK----AGRFLIEGFHLVEEA 71 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I +L T+ + L W+ + + V PQ + +I E QG+A A Sbjct: 72 LK-AKFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETE-TPQGIAAVCAI 126 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P++ + +++D V DP NIG ++R+A A G++ + ++ + +++ Sbjct: 127 PAPPSMTTLSGQ--FLLIDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRAS 184 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P IR +L + ++K+ G S + ALI+G EG+G+ Sbjct: 185 QGSIFHMPVIR-GSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPEFALIVGNEGEGV 243 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + E + ++ + G ++LNV+ A + LY Sbjct: 244 QSELLEGSDQNIYIPIYGQAESLNVAVATGILLYYL 279 >gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel] gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel] Length = 239 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 133/241 (55%), Gaps = 7/241 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + +N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + I+ + +P+ES +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDINAILLPQDNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +KIAL+ G+E KG+R ++T +A + + +++LNVSNAA++ ++ Sbjct: 178 ANDYFTNKFITNKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFHL 237 Query: 276 T 276 Sbjct: 238 L 238 >gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 255 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 15/247 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 62 RITRK--NHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 T--QNHF 280 Q F Sbjct: 240 AVKQRGF 246 >gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] Length = 246 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + L ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 251 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 120/268 (44%), Gaps = 21/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K++ + +KK+ +K R + L G H V A+ + + + Sbjct: 2 KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + W+ PV V + I E QG+A LS L+ V Sbjct: 50 ELIVDERTAVPPGWNVT---GVPVTIVTEAVMRAISSTE-TPQGIAA-VCRQLSTELEGV 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++D V DP N+G ++R+A + D +I + + + + ++ G+L H+P Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L + + G G + ++ ++ AL++G EG G+RP T Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTT 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + LY Q Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus profundus DSM 14977] gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus profundus DSM 14977] Length = 237 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +++YG + V A + ++L + + P + VP +D++V + Sbjct: 1 MWIYGRNPVLEAAREGG--VRRVLVARGVERKFLKKLEDA-GIPYELVPRIELDQLV-RT 56 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ E + DA L+++LD + DP N GAILRSA A G Sbjct: 57 THHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ R S S V K+++GA H+P +++ NL ++++ G GL+ + + LE Sbjct: 117 VVSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVALE 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A ++G+EG GLR ++ + H+ + G +LN + AA +A++ Sbjct: 177 EADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWA 231 >gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] Length = 287 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIV 105 EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A HP ++ +D++V Sbjct: 44 ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103 Query: 106 GKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++VHQGL L+ PLL L + Q+++VLD V DPHN+GAILRSAVA + Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE- 221 + T R+ SE+ VLAKSASGA++ + + I NL+ +L ++ F IGL S+ PLE Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGLDSEG--PLEV 221 Query: 222 ----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++K K+AL+LGAEGKGLR +T+E T++A L MPG IK+LNVSNAAA++LY+ + Sbjct: 222 QETLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVR 281 Query: 278 NHFAK 282 K Sbjct: 282 AAIKK 286 >gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] Length = 282 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 6/232 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++YG H V AAL NP R I LAT+ A A + + P + V + +D++ + Sbjct: 54 GYWIYGHHAVQAALANPERVIHDFLATREAAASFENASRKP-----QIVDRERLDRLCER 108 Query: 108 EAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AVHQG+ L PL + + D V ++VLD V DP NIGAILRSA AF ++ Sbjct: 109 DAVHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQD 168 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R +P ES +AK+ASGAL+ +P +R NL+ ALQ + + F +GL + + + Sbjct: 169 RNAPQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAG 228 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+LGAEG GLR T+ET +A ++MPG +++LNVSNAAAVALY Sbjct: 229 RRVALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280 >gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] Length = 314 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 13/279 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70 ++ H + N + + Q+ R + + + G + V AL P+ ++ Q Sbjct: 37 MRKGHAKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYVQQ 96 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + + A + P +D++ HQGL L+ P + + Sbjct: 97 FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155 Query: 131 NS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 156 AAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 215 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R +NLT AL++ G +GL++D + L + + + +++G+EGKGL Sbjct: 216 AARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGLSR 275 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 276 LVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314 >gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 249 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 12/248 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102 + + YGVH+V + L ++ L K RL L V+ +++ Sbjct: 2 AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVA 156 K+ G HQG+ P L LD + + + LL+ LD V DPHN+GA +R+A A Sbjct: 62 KLAGL-PFHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSD 215 +I + + S + K A+G E + +I+++NL L + + IG D Sbjct: 121 MGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180 Query: 216 SKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PL++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 181 ESALPLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240 Query: 275 ITQNHFAK 282 ++ Sbjct: 241 EACRQRSE 248 >gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R] gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R] Length = 313 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 27/292 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++ + +H KL R RD + RH + + G + V L Sbjct: 34 KGPTPKAEDRTYHA--AHKRKLERERRD---------RGRHQRE-MPELVVGRNPVLECL 81 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALE 117 + L + A RL + PV V +D++ G +HQG+ L Sbjct: 82 -HARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVNKLELDRMTG-NGMHQGIGLA 139 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + + ++LD++ DP N+GA++RS AF +G+I +R S Sbjct: 140 IPPYEYADVHDLIANAATSKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S +AV ++++G +P + +N+T +++ G+Q +GL + L+ D + Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVV 259 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 +++G+EGKG+ +E ++ + G +++LN S AA V L + Q Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRI 311 >gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 441 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 2/233 (0%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++L+G+H V AAL NP+R++ +LL T+ A A L P + +D+++G E Sbjct: 208 VWLHGLHAVEAALRNPARRLRRLLLTEEAEATLAERLPPPWALVAERTERAHMDQLLGTE 267 Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +VHQG+AL L SP L + + ++VLD V+DP N+GAILRSA AF +I Sbjct: 268 SVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCVIVQD 327 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R +P ES +AK+ASGAL+ +P +R+ N+ L + + +GL ++ + Sbjct: 328 RNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGPALGK 387 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL++GAEG GLR T+E+ + L M +++LNVS A A+ALY + Sbjct: 388 RRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440 >gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] Length = 265 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKQ----GLFFVEGFHLVEEALKAG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENSVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 263 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 10/240 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++L+G+H V AL NP+R +L+ T+NA +L P + P+ + Sbjct: 22 QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +VHQG ALE PL L L+++LD V DPHN+GAILRSA F Sbjct: 81 PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I+T R + E+ LAK+ASGALE PY+R+ NL + ++++ + GF +GL ++ + Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200 Query: 221 ---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++ + IAL+LGAEG GLR KT+ET + + +LNVSNAAAVALY + Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260 >gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN] gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923] gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae] gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923] Length = 278 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%) Query: 23 LRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79 LR NH K+ QS + + T + E + G + V L P+ ++ L T+ Sbjct: 12 LRPNHPAAKRNQSSPHRPVKRTDETETVL--GRNPVLECLRAGVPATALYVALGTE-VDK 68 Query: 80 RLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131 RL V VP +D+I +HQG+AL+ P D + Sbjct: 69 RLTESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSP 127 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AFS GI+ +R S S +AV ++++GA IP R Sbjct: 128 PALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVAR 187 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT AL+ G + IGL D L+ D +A+++G+EGKGL + + + Sbjct: 188 ATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEV 247 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S A V L Sbjct: 248 VSIPMAGQVESLNASVAVGVVLAEIARQR 276 >gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] Length = 247 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] Length = 266 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 143/258 (55%), Gaps = 13/258 (5%) Query: 31 KKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 KK +K R + ++L+G+H V AL NP R++ +L+ TKNA RL DA Sbjct: 4 KKPTWIVEKERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQ 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDP 144 + P+ + +VHQG ALE PL L ++ L+ LD V DP Sbjct: 63 SGITPEICEPRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLFLDRVTDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILRSA +I TKR + E+ LAK+ASGALE PY+RI NL D +++M + Sbjct: 123 HNVGAILRSAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKA 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 G+ +GL +++ +E I + IAL+LGAEG GLR KT+ T ++ + G Sbjct: 183 LGYILLGLDGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAG 242 Query: 259 IIKALNVSNAAAVALYIT 276 +LNVSNAAAV+LY + Sbjct: 243 AFGSLNVSNAAAVSLYAS 260 >gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 263 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 103/258 (39%), Positives = 140/258 (54%), Gaps = 5/258 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +HR + ++ +LYG H V AAL NP+RK+ QLL T A L + Sbjct: 8 SHRSAPDRGGRGGRGAVSAPRGTCWLYGQHAVQAALENPARKLRQLLVTAEAQETLA--S 65 Query: 86 NLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVN 142 L FP++ V +D + G +AVHQG+AL L P LD + ++VLD V Sbjct: 66 RLEGGFPIQPVRTERAALDTLCGPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVT 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP NIGAILRSA AF ++ R +P E+ LA++ASGALE +P IR+ NL+ L + Sbjct: 126 DPRNIGAILRSAAAFGAVAVVMQDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDAL 185 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S G +GL + ++AL+LGAEG GLR T+E +A L M +++ Sbjct: 186 KSRGLWVVGLDAGGGVLDGAAFHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMES 245 Query: 263 LNVSNAAAVALYITQNHF 280 LNVSNAAAVALY H Sbjct: 246 LNVSNAAAVALYEMFRHR 263 >gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] Length = 249 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102 + +++G + + L + RK+ ++L + + PV+TVP +D Sbjct: 2 SEYIWGRNPIMETLQS-VRKVKRILLAEGSKREGGTLNTIIQEAQKRQIPVETVPRARLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K AVHQG A + D + L++LD + D +N+G++LR+A Sbjct: 61 QM-SKGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQDVNNLGSLLRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I + + +A + K+++GA EHI R +NLT + + +GL+ + Sbjct: 120 AAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLKQQNIWIVGLAGE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 Q +A+++G EGKG+ +E + L M G I +LN + A ++ LY Sbjct: 180 GDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVAGSITLYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 ALRQRS 245 >gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] Length = 265 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ +P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] Length = 310 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 +++ + + ++ ++ + + E LYG+H+V AAL NP R+I T+NA A Sbjct: 43 FSRFGDSRKSARRPKTAGESFAKLAAGET--LYGLHSVEAALANPKRRIRHAWLTENAAA 100 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQL 134 RL + P +D + G AVHQG L+ PL P LD + Sbjct: 101 RLAPLLD-ARKIAATLALPADLDALTGPGAVHQGAVLQVEPLAQPGLDDFLDALGDAPAT 159 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD V DPHN+GA+LRSA AF +I R+SP +A LAKSASG LEH+P I + N Sbjct: 160 VVILDQVTDPHNVGAVLRSAAAFGIGALIVQDRHSPPLTAALAKSASGGLEHVPVIEVVN 219 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253 L L+K+ F IG S+ + + + ++A + GAE KGLR +E ++A Sbjct: 220 LARVLEKLKERDFLCIGFDSEGAQRFDAALAGGRRVAFVFGAEDKGLRRLVREGCDAIAA 279 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 L PG IK+LN+SNAAA+ + Sbjct: 280 LSAPGPIKSLNISNAAAIVFHARAQ 304 >gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] Length = 265 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENSVPVYGTALENGAPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 283 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 KK+++ ++ H + ++ ++ + + + + G + V AL + + Sbjct: 2 KKNDR-KKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRSEQQ 60 Query: 67 KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 L+ N L A V++V ++ + + HQG+A AP Sbjct: 61 MDKLLILKDNKDHVLGDLAEKARRRGIVVQSVEKIKLEGLADGQ-PHQGVAAMMAPFPYS 119 Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 ++ DA L+++LDH+ DPHN+GAI+RSA G+I KR S S +AV Sbjct: 120 SMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAVSV 179 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K++SGA+ H P +++ NLT + ++ + GF + D P + K+A+I+G EG Sbjct: 180 KASSGAVAHTPIVKVGNLTQCIDELKAKGFWIMAADMDGA-PYYKNDFKGKLAIIIGNEG 238 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALN 264 KG+ P ++ + + G I + N Sbjct: 239 KGISPNVKKQCDYSVSIPLYGDIDSFN 265 >gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] Length = 267 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 106/245 (43%), Gaps = 14/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTID 102 LYG+H V A+ R++ + + AR D D V T + Sbjct: 2 DVLYGLHPVEEAIRAGMRQLDHVSVAREREARRDARLDAVLDLCRAAGIRVNTESRDQLT 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAV 155 + +A HQG+ L+ + N+ + LD V DPHN+GA+LRSA Sbjct: 62 RHAKTDA-HQGIVAFLRERKFLALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 DG+I +R S SA +AKS++GA EH+ ++ N+T AL+ M +GL Sbjct: 121 GSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQVVNITRALETMKKHNVWIVGLDER 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L+LG+EG GL + T + + M G + +LNVS A AV +Y Sbjct: 181 GTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 240 Query: 276 TQNHF 280 Sbjct: 241 AMRQR 245 >gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] Length = 265 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 141/238 (59%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNAL +L+ DA + V Sbjct: 14 KERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKLE-DAVAACGMAPEVV 72 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152 P+ D + + +VHQG AL+ PL L V + L+++LD V DPHN+GA+LR Sbjct: 73 EPRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLR 132 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL DA+Q++ + G+ +GL Sbjct: 133 SAEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGL 192 Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ L Q + I L+LGAEG GLR +T+ET + + G +LNVSN Sbjct: 193 DGEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250 >gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] Length = 244 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG+H + L I+ L K N + D + P +K+ Sbjct: 6 LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLEPKSFFNKL--- 62 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ A L ++ L + LD V DPHN+GAILR+A A Sbjct: 63 EGVHQGVVATVAKEADLNETDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +A + K A GA E + + +SNL ++++ G GL+ ++ L Sbjct: 123 VVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNTTLY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q + L++GAEG GLR T+ET +A + M G I++LNVS A V LY Sbjct: 183 QLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQRL 242 Query: 282 K 282 + Sbjct: 243 Q 243 >gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + + VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIELCRQSGVVVKFVDKNKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAQEFEYCDTDDILFEARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAIEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 248 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V L ++ L K RL L V+ +++K+ G + Sbjct: 8 YGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG-Q 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220 I + + S + K A+G E + +I+++NL L + + IG D K P+ Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246 Query: 281 A 281 Sbjct: 247 N 247 >gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E+L + G + V A + K+F L ++ R H ++ V + +D+ Sbjct: 3 EESLIIEGRNAVIEAFRSGKTIDKVFVLDGCQDGPVRTIVREAKKHDTILQFVTKERLDQ 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ A ++ + + +LD++ DPHN+GAI+R+A Sbjct: 63 L-SETGKHQGVVAHAAAYEYAEVEDILALAKEKGEDPFIFILDNIEDPHNLGAIIRTANL 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + +A +AK+++GAL + P +++NL ++++ G + Sbjct: 122 AGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMGG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + I L++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 182 ET-MYRLNLTGPIGLVIGNEGTGVGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEI 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] Length = 251 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLEKLAGL- 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + L+ + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPVMNEKDLEQLLEQTPDVLLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L +M + IG D + PL Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQVRVIGTMLDEQALPL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q I +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVSVATGMALYEACRQR 246 Query: 281 A 281 Sbjct: 247 N 247 >gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 246 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 + ++GV V A+ I ++L K+ + L + PV+ VP + I+++ Sbjct: 5 SEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRV 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 64 TRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D +I R S S +A K+++GAL +P R +L + LQ + + GF + + Sbjct: 122 AVDAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKGD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 182 YDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAV 241 Query: 278 NHF 280 Sbjct: 242 KQR 244 >gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 322 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 13/262 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDA 85 D ++MQ R PE + G + V L P+ ++ + + + + Sbjct: 62 DQRQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQR 119 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138 + VP +D++ +HQG+AL+ P D + + LL+ L Sbjct: 120 AADAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVAL 178 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D++ DP N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT Sbjct: 179 DNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRT 238 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ S G Q +GL + L+ + +++G+EGKGL +ET S+ + M G Sbjct: 239 LKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAG 298 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +++LN S AA V L Sbjct: 299 EVESLNASVAAGVVLSEIARQR 320 >gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] Length = 265 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ +P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] Length = 246 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E + G + V A + K+F L ++ R H + V + +D++ Sbjct: 4 EEQKIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREARKHDTIINFVDKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + + +LD++ DPHN+GAI+R+A Sbjct: 64 -SETKKHQGVIAVAAAYEYAEVEDILKNAEEKGEPPFIFILDNIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+ + P +++NLT A++++ G + Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTAAIKELKEKGLWFVCADM-GG 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 182 TEMYKLDLKGPIGLVIGNEGEGVSKLVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHFAK 282 + Sbjct: 242 RQRLQ 246 >gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ T+ A V+ P +D++ Sbjct: 3 VVYGVNQVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ + LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ ++D ++ Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVAFAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + AL+LG+EG+GLRP + T A + M G + +L+VS +AAVALY Sbjct: 182 ALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 321 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 13/262 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDA 85 D ++MQ R PE + G + V L P+ ++ + + + + Sbjct: 61 DQRQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQR 118 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138 + VP +D++ +HQG+AL+ P D + + LL+ L Sbjct: 119 AADAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVAL 177 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D++ DP N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT Sbjct: 178 DNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRT 237 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ S G Q +GL + L+ + +++G+EGKGL +ET S+ + M G Sbjct: 238 LKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAG 297 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +++LN S AA V L Sbjct: 298 EVESLNASVAAGVVLSEIARQR 319 >gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] Length = 265 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 138/240 (57%), Gaps = 11/240 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ R + E ++L+G+H V AL NP+R+ +L+ TKNA +L DA + Sbjct: 12 KERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAAGGIEPEMA 70 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAI 150 P+ + ++VHQG ALE PL ++ D VR +++LD V DPHN+GAI Sbjct: 71 DPRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVR-PPRVVLLDRVTDPHNVGAI 129 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA F +I + ++ E+ LAK+ASGALE PY+R+ NL D + ++ S G+ + Sbjct: 130 LRSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQSMGYLVL 189 Query: 211 GLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++ LE +++ +AL+LGAEG GLRPKT++T + + G +LNVSN Sbjct: 190 GLDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVSN 249 >gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] Length = 265 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ A+ Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 113 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] Length = 245 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 10/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTID 102 E + G V AL KI ++L K + + D + V+ + +D Sbjct: 2 EEKRMIEGRRPVMEALR-AGTKITRILLQKGSRGKPVDDILALAKEYSVKVEYLDKAALD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG+ ET P + L++LDH+ DPHN+GA++R+A A Sbjct: 61 KRA-TSRNHQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 CDGII +R + + ++A+GA E++P ++ NL L + G G D + Sbjct: 120 GCDGIIIPERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGE 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L++G+EG+GL +E + L M G + +LN S A A+ +Y Sbjct: 180 SVYTTGDYQGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 249 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTIDKIVG 106 ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++I Sbjct: 1 MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 60 K--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--Q 277 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Q Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237 Query: 278 NHF 280 F Sbjct: 238 RGF 240 >gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] Length = 314 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 13/279 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70 ++ H + + + Q+ R + + + G ++V AL P+ ++ Q Sbjct: 37 MRKGHAKQRAAQAKVRRAQGGRPQQRRGGGRSASELVVGRNSVVEALREGVPASTLYVQQ 96 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 + + A + P +D++ HQGL L+ P + + Sbjct: 97 FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155 Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD V DP N+GA++RS AF G++ +R + +A K+++GA Sbjct: 156 AGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGA 215 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 P R +NLT AL+ G +GL++D + L + + +++G+EGKGL Sbjct: 216 AARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGLSR 275 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 276 LVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRRA 314 >gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 240 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I++ NL + + GF IGL+ Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] Length = 312 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 13/262 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANL 87 K Q+ K+R + + + G + V AL + P+ ++ Q + + A Sbjct: 52 KQQARRPKARPGQRSTSELVVGRNPVYEALRDGVPASTLYVQQFIDNDERVRDALALAAE 111 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140 + P +D++ HQGL L+ P + + L+++LD Sbjct: 112 RGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHAEDLTAAAYDAGQDPLIVLLDG 170 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GA++RS AF G++ +R + +A KS++GA P R +NLT L+ Sbjct: 171 VTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGAAARTPVARATNLTRTLE 230 Query: 201 KMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G +GL++D + + +A+++G+EGKGL ET + MPG Sbjct: 231 AYKKEGVVVVGLAADGEADVTDLPALEGPVAIVVGSEGKGLSRLVGETCDIRVRIPMPGG 290 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LN AA + LY A Sbjct: 291 AESLNAGVAAGIVLYEAARRRA 312 >gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 249 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 99/233 (42%), Positives = 139/233 (59%), Gaps = 6/233 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + + L+G H V AAL NP RK +L AT+ + LD + LP FPV+ Sbjct: 5 RGSGRASTGQVRLWGRHAVEAALLNPERKHRKLWATREGIESLDGE--LPPDFPVEYADT 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSA 154 +D++V ++A HQGL LE APL L V S + +++LD V DPHN+GAILRSA Sbjct: 63 PDLDRLVARDAPHQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF I+T R++P ES V+AKSASGALE +P++R+ NL AL + GF IGL+ Sbjct: 123 AAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAG 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ L + I +AL+LGAEG GLR ++A L + I++LNVSN Sbjct: 183 EAEMTLAEAIPTGPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235 >gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] Length = 247 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R +L LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] Length = 246 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 3 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 61 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD V D N GAI R+ Sbjct: 62 ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 120 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 180 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 239 Query: 277 QNHFA 281 Sbjct: 240 VKQRN 244 >gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] Length = 265 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ +P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILTKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A] gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] Length = 247 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1] Length = 260 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 11/256 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPF 91 + F + S E + G + V A + K++ L ++ + Sbjct: 4 REFENNIKTESDEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGIVNSIVREAKKQDT 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 + + + ++++ + HQG+ A ++ + +LD + DP Sbjct: 64 VINYLSKEKLNQM-SQAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI+R+A G+I KR + +A + K+++GA+ + P +++N++ ++++ Sbjct: 123 HNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKD 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + + + + L++G EG G+ +E + + M G I +LN Sbjct: 183 RGMWFACADMDGE-LMYKCNLTGSLGLVIGNEGSGVSRLVKEKCDYVVSVPMKGDIDSLN 241 Query: 265 VSNAAAVALYITQNHF 280 S AA V Y Sbjct: 242 ASVAAGVLAYEVVRQR 257 >gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YG + V AL ++ ++ + L + VP +D++V Sbjct: 3 GGMRIYGRNPVLEALREG--RVRRVWVARGVERWLVRQLE-ASGVELVFVPRIELDQMV- 58 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ E + +A LL+++D V DP N GAILR+A A Sbjct: 59 RTTRHQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGA 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+++ +R S S V K+++GA IP +R+ NL ++ + G G + ++K Sbjct: 119 HGVVSEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKT 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL++G+EG+G+R +E + + + G ++LNV+ A +AL+ H Sbjct: 179 LAELDYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQH 238 Query: 280 FA 281 Sbjct: 239 RG 240 >gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168] gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168] Length = 244 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 + G + V A+ + R I ++ + ++D P++ +DK Sbjct: 4 IEGRNPVIEAIKSG-RTIKKIFIQEGVRGKKVDRIIKEASRFNIPLQKAKKDFLDKKARS 62 Query: 108 EAVHQGLALETAPLLS----PTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + ++ R +++LD V DPHN+GAI+R+A A Sbjct: 63 HS-HQGIIAMADDIKYVSPREMVEIAREKGEDPFIIILDQVQDPHNLGAIIRTAYAAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I ++ S + V+ K+++GA+ H+P ++SN+ + + G G +P Sbjct: 122 GLIYPRKRSADITPVVTKASAGAVNHLPLAKVSNINYTIADLKDMGLWITGTDVRGTRPY 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EGKG+R +E + ++ M G + +LN S AA V ++ Sbjct: 182 YSADYKGPVGLVIGNEGKGMRRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241 >gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 314 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 28/291 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++++ +H KL R RD RH + +L + G + V L+ Sbjct: 36 TPKAEDRVYH--SAHKRKLERQRRD---------SGRHEKEKADLVV-GRNPVVECLHAK 83 Query: 64 -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P+ +F L T + RL L PV VP + +D + G +HQG+ L+ P Sbjct: 84 VPAEALFVALGTAH-DDRLSEAVTLANSKGLPVHEVPRRDLDTMTG-NGLHQGIGLKIQP 141 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + + + +VLD++ DP N+GA++RS AF G+I +R S + Sbjct: 142 YKYADVFDLMAGVKDRGQTGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVT 201 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALI 232 V ++++G +P + N+T +++ G+ +GL + + L+ D + ++ Sbjct: 202 GVAWRTSAGTAARLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIV 261 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 +G+EGKG+ +E + + +++LN S AA V L + Q A Sbjct: 262 VGSEGKGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQRRAA 312 >gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] Length = 246 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ + + P L + L ++LD V D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 317 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 14/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-- 69 S + H K R + +K + +R + + + G + V AL + P+ ++ Sbjct: 40 SARKGH-KKNRVANAQARKAATRRPVARRGGKGTSEMVVGRNPVFEALRDGVPASTLYVQ 98 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 Q + + A + P +D++ HQGL L+ P + + Sbjct: 99 QFIDNDERVREALQLATGRGNINIMEAPRPELDRLT-NGLNHQGLVLQVPPYEYAHPEDL 157 Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + + E + +++G+EGKGL Sbjct: 218 TAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVIVVGSEGKGLS 277 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + + MPG ++LN AA V LY A Sbjct: 278 RLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRRA 317 >gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] Length = 316 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 15/279 (5%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70 ++ H + N R + + +R + + + G ++V AL P+ ++ Q Sbjct: 41 MRKGHAKQRITNAR--TRQAAKRPVARRGGKGSSELVVGRNSVFEALREGVPANTLYVQQ 98 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 + + + + A + P +D++ HQG+ L+ P + + Sbjct: 99 FIDSDDRVREALKLAADRGGIHLMEAPKPELDRMT-NGLNHQGVVLQVPPYEYAHPEDLS 157 Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 158 AAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 217 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242 P R +NLT L+ G +GL++D + L+ E + + +++G+EGKGL Sbjct: 218 AARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQDVEALDGPLVIVVGSEGKGLSR 277 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA V LY A Sbjct: 278 LVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 316 >gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 260 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 111/261 (42%), Gaps = 10/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K + ++ ++ ++ + G V A + L+ T++A ++D Sbjct: 6 SKENNLFKNTKKLKER-KNRTKTSRYIIEGFRLVQEAFK-AKVDVDYLIVTEDAHDKVDE 63 Query: 84 DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + + +++ E QG+ T+++ + ++ D V Sbjct: 64 FLGKYINGEIKIYEISSNLFKELISTE-NPQGILAVIK---MNTMESKFDGDFYLLCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A II TK + +S G++ +IP +++ Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF + S D+ K Q ++ L +G EG G+ + E A + + MPG + Sbjct: 180 LKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSREVLEMADTKVKIPMPGNAE 239 Query: 262 ALNVSNAAAVALYI--TQNHF 280 +LNV+ A++V +Y QN Sbjct: 240 SLNVAVASSVIMYEKVRQNQL 260 >gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] Length = 258 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 19/246 (7%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G H + AL + ++ ARL+ A L VK + +D++V Sbjct: 5 ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMV-PG 63 Query: 109 AVHQGLALE--------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 H+G ++ T +L+ ++S L+MVLD + DPHN+GAILRSA Sbjct: 64 IDHRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDS-LVMVLDGITDPHNLGAILRSA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F D ++ +R S + +A+ +SGA +++P ++N+T L M GF G Sbjct: 123 DQFGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNITSTLTMMKDHGFWIYGADM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + E + +++G+EG G+ +E + + M G I +LNVS AA + +Y Sbjct: 183 NGESS-ETIEFTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMY 241 Query: 275 ITQNHF 280 + Sbjct: 242 EARRQR 247 >gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] Length = 247 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L G + V A K+F L K H + V + +D++ Sbjct: 4 EEFTLEGRNAVIEAYRAGKTIDKLFVLEHCKEGSMNTVLREAKKHDTVINYVKKERLDQM 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A T+D + S +++LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIGYLAAYEYATVDEILDKAREKGESPFVILLDDIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + +A +AK+++GAL + P +++N++ ++++ G + Sbjct: 123 GAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTIEELKKEGMWFVCADM-GG 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I L++G EGKG+ +E +A + M G I +LN S A V Y Sbjct: 182 TTMYDLDLKGSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] Length = 334 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 20/287 (6%) Query: 6 KKKSEKIFSLKDS-HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVS 58 KK E + K+S ++ +R + +K F+ K+ Q +++G H+V Sbjct: 45 NKKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVY 104 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGL 114 L + R I ++ T + + L ++ V + ++ A HQG+ Sbjct: 105 ETL-SSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTC-GASHQGV 162 Query: 115 ALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 AL+ A + L+ + + +++ D + DPHN+GAI+RSA AF C G+I +R Sbjct: 163 ALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQR 222 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + +AK A+GALEH+ R+ NL AL+++ GF +GLS D + + + Sbjct: 223 RSAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKA 282 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++G+E KG+ TQ+ + + + G +LN S AAA++LY Sbjct: 283 PLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLY 329 >gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 248 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V + L+ I ++ ++N+ ++ + ++ + ++ I Sbjct: 2 SELVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLN-I 60 Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++HQG+ E + L + L++LD + DPHN+GA LRSA A Sbjct: 61 KSSGSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S S ++ + K +SG+ +H+ ++R++NL L+ + + +G S Sbjct: 121 GVHMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +AL++G+EG G+R T+E + + M G +LNVS A + L+ Sbjct: 181 REIFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] Length = 296 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 13/256 (5%) Query: 37 NQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PF 91 ++R Q + ++ G + V L + L+A+ +A R+ + Sbjct: 38 KTRARAVRQAADAPEWVLGRNPVLECLRAKVPAVELLVASGIDADERVAESVRIAGNVGV 97 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 PV V +D+ A HQG+ L P + + L + LDH++DP Sbjct: 98 PVTEVARFELDRRSS-GAPHQGIGLRVRPYEYHHPEDLLTEAENSGRPALFVALDHISDP 156 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RSA AF G++ R S S +A+ ++++GA +P + NL +L++ Sbjct: 157 RNLGAVVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQE 216 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +GL ++ L+ + +AL++G+EGKGL +E+ + + M G +++LN Sbjct: 217 RGLLLVGLDAEGDTSLDDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLN 276 Query: 265 VSNAAAVALYITQNHF 280 VS A V L Sbjct: 277 VSVATGVVLGEIARQR 292 >gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] Length = 265 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ + F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I KI+ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKREK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTN 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor bescii DSM 6725] Length = 253 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + D + VK V I K+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQNGVVVKFVDKHKIYKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G ++ KP+ Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] Length = 267 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 15/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 D +KM ++S QP+N +YG + V+ L + S L+A A A + + Sbjct: 2 DEQKMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAM 61 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVL 138 VK V P + + G E+ HQG+A + + T++ + N L++ Sbjct: 62 AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLS 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ G D PL + IAL+LG+EG G+ ++ + L M Sbjct: 181 IRRLKDQGVFVYCADMDG-VPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAA 239 Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265 >gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] Length = 249 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I K HQG+ T+ + P L + L ++LD + D N GAI R+ Sbjct: 63 ITRK--NHQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S S +A K+++GAL +P R +L LQ + GF + + Sbjct: 121 AAVDAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 249 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 14/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102 E+ + G + V A + + I +L + + +A + V + +D Sbjct: 6 ESRIIEGRNAVLEAFRSG-KTIDRLFILDGCKDGPVQTILREAKKHKDTVISFVKKERLD 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ A +D + +++LD++ DPHN+GAI+R+A Sbjct: 65 QL-SETGKHQGVIAYGASYNYAEVDDILERAKQKGEDPFIIILDNIEDPHNLGAIIRTAN 123 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I K + S +A +AK+++GA+ + P +++N+ + ++ + G Sbjct: 124 LAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVTNIANTIEDLKDKGLWFACADM- 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q I L++G EG G+ +E +A + M G I +LN S A V + Sbjct: 183 GGTTMYQLNLKGPIGLVIGNEGSGVSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFE 242 Query: 276 TQNHF 280 Sbjct: 243 VVRQR 247 >gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] Length = 243 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V A+ ++I +L K A +L D L H + VP + ++++ Sbjct: 5 LVFGIRPVVEAIE-AGKQIEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNRLT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + +P+ L+ + + L+++ D V D N GAI RSA Sbjct: 63 -RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I + + ++ +S++GAL IP R+ ++ + L+ + + G+Q +G + S+K L Sbjct: 122 GLIVPLKNAAPVNSEAIRSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKSRKLL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL++GAE G+ + + + M G I++LNVS AAAV L+ Sbjct: 182 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQR 241 >gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis str. Arkansas] Length = 252 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 +++YG H +AAL N +RK +LL T+N + + + + +K V P I+ Sbjct: 6 IWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNINLKQVNPNYINS 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ++ + HQG+AL+ + + S T++ V + S +++LD V D HN+G+I+RSAV F+ Sbjct: 66 VLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II SPSE+ ++K++SGA++ IP + + N+ + ++ + G+ G + + Sbjct: 126 DAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEF 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + + K +I G+E KG+R T+E + + + I +LNVSNAAAVALY Sbjct: 186 LHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240 >gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 287 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 17/270 (6%) Query: 24 RRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA- 77 ++ R K+ ++ ++ R + + L G + V AL R I ++L + A Sbjct: 13 KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAK 71 Query: 78 --LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 PV+ + +D++ + HQG+ AP+ +LD V Sbjct: 72 EAALAPLLSLAREQGVPVRASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEE 130 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL++LD + DPHN GA+LR+A A G++ +R + +A +AK+++GA+EH+ Sbjct: 131 KGEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVR 190 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +RI N+ ++++ G +G + + + +++G+EGKGL +ET Sbjct: 191 VVRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETC 250 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G I +LN S A A+ +Y + Sbjct: 251 DFLVRIPMHGAINSLNASVAGALLMYEARR 280 >gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] Length = 305 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G + V A + R + +L K + + + VP + ++++ + Sbjct: 68 LEGRNAVLEAFRSG-RSVDKLYLQADLKEGMIQTIAREARKAGTVINYVPKERLNQM-SE 125 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A ++ + + L +LD + DPHN+GAI+R+A Sbjct: 126 TGSHQGVIAVVASFDYAEVEDIFQKAKDKGEAPFLFLLDGIEDPHNLGAIIRTANLAGAH 185 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I T+ + +A +AK+++GA+ + P +++NL + ++ G + + D + + Sbjct: 186 GVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDELKKKGMWFVCAAMDGTR-M 244 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 245 YDLDLKGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304 >gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] Length = 251 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 11/249 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 R E + G + V A + K+F L ++ + +K V Sbjct: 2 RKNMAYEECTVVGRNAVMEAYRSGKTIDKLFILDGCQDGPIKSILREARKRDTLIKFVSK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + +D + HQG+ A T++ + + ++ D + DPHN+GAI+ Sbjct: 62 EKLDSL-SFHEKHQGVVAIAAAYEYATVEDLFKKAEEKGEAPFFILCDEIEDPHNLGAII 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR + ++ +AK ++GAL + P R++NL+ + ++ G + Sbjct: 121 RTANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPVARVTNLSRTIDELKDKGMWFVC 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + I LI+G EG G+ +E +A + M G I +LN S A V Sbjct: 181 GDMGGE-LMYDLNLTGSIGLIIGNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGV 239 Query: 272 ALYITQNHF 280 + Sbjct: 240 LAFEIVRQR 248 >gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 246 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 + + G ++V A+ + + + RL + ++ +K V + +D + Sbjct: 1 MIIIGRNSVIEAIKKDRNLDTIYIKSGDKDERLKYIISIAKNKKILIKEVDRKKLDALAQ 60 Query: 107 KEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+A + + + +M+LD + DPHN+GAI+RSA Sbjct: 61 GE-NHQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIEDPHNLGAIIRSAHL 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I R S + + + K + GA ++ IR++NL DA++K+ G L Sbjct: 120 SGVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKLKKAGLWIYCLDM-G 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 IA+I+G EGKG+ ++ + + + M G I +LN S A+++ ++ Sbjct: 179 NDYYFNTDLTGDIAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEV 238 Query: 277 QNHF 280 Sbjct: 239 LRQR 242 >gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILNNKGKNHKLIDKIINKLEDENVPIFYEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGII ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIIISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ +++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKKENFWVYGLAGEAEGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC 13032] gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 313 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 27/292 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++ + +H K+ R+ RD + RH + + G + V L Sbjct: 34 KGPTPKAEDRTYHA--AHKRKVERDRRD---------RGRHQRE-MPELVVGRNPVLECL 81 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALE 117 + L + A RL + PV V +D++ G +HQG+ L Sbjct: 82 -HARVPATALYVAEGAANDERLSEAVHTAAGRNLPVLEVNKLELDRMTG-NGMHQGIGLA 139 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P + + + + ++LD++ DP N+GA++RS AF +G+I +R S Sbjct: 140 IPPYEYADVHDLIANAAASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S +AV ++++G +P + +N+T +++ G+Q +GL + L+ D + Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVV 259 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280 +++G+EGKG+ +E ++ + G +++LN S AA V L + Q Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRI 311 >gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 240 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ ++N + + +LD + D NIGAI+RS+ Sbjct: 59 DILSKLL-ENQTHQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF D II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ Sbjct: 118 AFDIDAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DK+AL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236 >gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] Length = 250 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 13/248 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTI 101 + L + G + V A + R I +L ++ R H + V + + Sbjct: 5 KESELMIEGRNAVLEAFRSG-RPIDKLFVLDGCQDGPVRTIVREAKKHDTVLNFVTKERL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 ++ + HQG+ A +D + + +LD++ DPHN+GAI+R+A Sbjct: 64 SQM-SETGRHQGVIAYGAAYEYAGVDDMLALAEERGEDPFIFLLDNIEDPHNLGAIIRTA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G+I KR + +A +A++++GAL + P +++NL ++++ G + Sbjct: 123 NLAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + + + I L++G EG+G+ +ET A + M G I +LN S AA V Y Sbjct: 183 DGE-SMYRLNLTGPIGLVIGNEGEGVGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAY 241 Query: 275 ITQNHFAK 282 + Sbjct: 242 EIVRQRIQ 249 >gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium nodosum Rt17-B1] Length = 234 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 5/233 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG 106 + +YG + + L + + + + + LD P P + K+ G Sbjct: 1 MIVYGRNVLKEILTSNH-PVKLIYFSDSHDKELDKLIEQVKERKLPYTIAPKNVLKKLCG 59 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +E QG+ ++ + + +++LD V DP N+GAI+R+AVA + ++ TK Sbjct: 60 EEKN-QGVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTK 118 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + K+++G + IP + NL ++K+ G G K PL + Sbjct: 119 DNSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIYGADMRGK-PLWEVKLE 177 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G EG G+R +E+ + + M I +LNVS +A + +Y Sbjct: 178 RPLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRR 230 >gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] Length = 240 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 7/239 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155 + K++ + HQG+A + P+ S L+ + N + + +LD + D NIGAI+RSA Sbjct: 59 DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF + II + SP+ES +AK+A G LE IP I+++NL + + F IGL+ Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWIIGLTGS 177 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ +DK L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 178 ANDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix DSM 17093] Length = 241 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 13/238 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105 + +YG V+ AL + +L + ++ VP +D+ + Sbjct: 1 MLIYGKQAVAEALREGG--VLRLFVAHGVQPGTVKQFEALARKAGVTLERVPRTQLDQAL 58 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K HQG+ E L +A LL++LD + DPHN GAI+RSA Sbjct: 59 -KTTRHQGVVAELPELSYADPEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLG 117 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++T +R S SAV+AK ++GA H+P +++ NL ++ + + G G S D+ Sbjct: 118 AHGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKARGVWLYGASGDAAA 177 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +Q + AL++GAEG G+R +ET + + M G + +LN S AA + LY Sbjct: 178 LPQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAA 235 >gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] Length = 255 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 14/258 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPH 89 MQ N K R + N ++G+ V A+ + I L + + + Sbjct: 1 MQDRNFK-RQEPRESNQMIFGIRAVIEAIK-AGKDIESLFIQRGLTGGIYTELKTLLREF 58 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 P + VP + +++I K HQG+ +P+ ++ + + L+++LD++ Sbjct: 59 DIPSQQVPVEKLNRITAK--NHQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N GAI R+A I+ KR + + K+++GAL +P R +L L+ + Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + + + + A+I+GAE G+ + + + + M G I++ Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS +A + LY Sbjct: 237 LNVSVSAGIILYEAVRQR 254 >gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] Length = 229 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 10/226 (4%) Query: 64 PSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 SR + K RL N + ++ + + +D + A HQGL P Sbjct: 1 RSRAFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDKA-EGANHQGLIARVKP 59 Query: 121 ---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L LD + LL+VLD V DPHN+GA LR+A A +I K S +A Sbjct: 60 ARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTA 119 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++K A GA E +P +R++NL ++ + G +G + ++ + Q +A+++G Sbjct: 120 TVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSLAIVMG 179 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 180 AEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 225 >gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFYEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGI+ ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ ++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] Length = 237 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFFEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGI+ ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ ++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 235 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + + A+ RKI+QL + L H + V + + + K+ Sbjct: 1 MIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQ 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A LD +S Q ++LD +NDPHN+GAILR+ A + DG+I + Sbjct: 59 KTHQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMS 118 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K+ ++ +AK + GALE+ ++NL + K+ +G S+S + Q K Sbjct: 119 KKNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPK 178 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N + +I+G EG G+R ++ + + M G I +LNVS AAA+ +Y T Sbjct: 179 NSSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIYST 229 >gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1] gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169] gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1] gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1] gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1] gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8] gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7] gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72] gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1] gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E] Length = 290 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 29/292 (9%) Query: 6 KKKSEKIF--SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 KK+S+K S K S KL + H K ++P+N + YG+H VS + Sbjct: 2 KKRSQKTDNQSFKSSSKEKLNKPHHQAK-----------PAKPKNPYFYGIHAVSMLIKR 50 Query: 64 PSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 ++ L + L + ++ + + ++ G + HQG+ Sbjct: 51 RPEEVLGLFIQLRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQ-HQGVVAL 109 Query: 117 -ETAPLLSPT-LDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 TAP+ T LD + ++ L +VLD + D HN+GA LR+A A D +I + S Sbjct: 110 ARTAPMADETILDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPI 169 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIAL 231 + +AK + GA E IP I ++NL L+KM G G + D S KP + K+A+ Sbjct: 170 TPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGGKVAI 229 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVALYITQNHF 280 I+G+EG G+R TQ ++ ++ M ++ +LNVS A + LY Sbjct: 230 IMGSEGDGMRRLTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281 >gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 236 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 7/235 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +++G +TV+A L + + L K + A V+ V +DK+ + Sbjct: 4 YIFGKNTVTAYLKSGQKPKNLYLFNKGNYQEIVALAK-EQGIRVQFVDKFRLDKMA--DG 60 Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 VHQG+ +E +L + + L+++ D + DPHN+GAILR+ A DG++ K Sbjct: 61 VHQGVVIEIQDYKYHSLQEIIKGAKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225 S ++ +AK ++GA+ + +N+ A+ ++ G+ + + + Sbjct: 121 HRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNV 180 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G+EGKG+ ++ + + M G + +LNVS A V L+ Sbjct: 181 DMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRR 235 >gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1] gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1] Length = 260 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 139/248 (56%), Gaps = 9/248 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + E ++L+G+H V AL NP R++ +L+ + NA +L DA + Sbjct: 11 KERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIA 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151 P+ + +VHQG A+E PL A+ ++++LD V+DPHN+GAIL Sbjct: 70 DPRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I R+S E+ LAK+ASGALE +PY RI NL DA++ + + GF +G Sbjct: 130 RSAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVG 189 Query: 212 LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ + P++ + IAL+LGAEG GLR +T+ +A + +LNVSNA Sbjct: 190 LAEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNA 249 Query: 269 AAVALYIT 276 AAVALY Sbjct: 250 AAVALYAL 257 >gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4] gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter arcticus 273-4] Length = 256 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 15/243 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107 YG+H + A L L + A + ++ + ++ G Sbjct: 8 YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQAIMAQARDNGISIQPTQKDKLTQLCGS 67 Query: 108 EAVHQGLALETAPL---LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L PL LD + R LL+VLD + D HN GA LR+AVA D + Sbjct: 68 -PQHQGVVLNARPLGFADEGLLDTLAGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE 221 I K ++ S + +AK + GA E +P + ++NL L K+ + G G + ++ KPL Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADAKPLH 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQ 277 KIA+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 187 TADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246 Query: 278 NHF 280 Sbjct: 247 RQR 249 >gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] Length = 254 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ F+ G H V AL + Sbjct: 2 KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 48 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 49 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + + Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKSD 220 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252 >gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] Length = 249 Score = 231 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTIDKIVG 106 ++GV V A+ R+I ++L K+ + L + A L + PV+ VP + I++I Sbjct: 1 MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ + + P L + L ++LD + D N GAI R+ Sbjct: 60 K--NHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYD 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--Q 277 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Q Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237 Query: 278 NHF 280 F Sbjct: 238 RGF 240 >gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum K10] Length = 247 Score = 231 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + ++F L ++ + + V + +D++ Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVKSITREARKQDTIINYVSKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + L +LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVLAYAAAYKYAQVEDMLRAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NL+ ++++ G + + Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEELKERGLWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 -SMYRLNLKGPIGLVIGNEGEGVSRLVKEKCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L G+H V AL+ I +LL K RL+ +L ++ VP + + ++ Sbjct: 3 VLAGIHAVKHALDAGD-SIDELLIEKGKHHPRLNELIHLAKKHSIRFSFVPKEALARLA- 60 Query: 107 KEAVHQGLAL-------ETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ + P L V + ++++LD V DPHN+GA +R+A A Sbjct: 61 EGVPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMVLLLDQVTDPHNLGACVRTAEAA 120 Query: 158 SCDGIITTKRYSPSE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 C +I K ++ S V+AK+A GAL +P +R+ N+ ++++ GF T+GL+ ++ Sbjct: 121 GCAAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVINMKRCIEQLQQQGFWTVGLAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + A+++G+E KG+R +ET + H+ MPG++++LNVS A VAL+ Sbjct: 181 ELSIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEI 240 Query: 277 QNHF 280 Sbjct: 241 NRQR 244 >gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] Length = 321 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 14/253 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95 +R E ++ G +++ AL I + + + A P+ Sbjct: 71 ARRKPAGETEWIAGRNSIVEALR-AELPITGIYVASRIETDERVKEILAAAGDKGIPLLE 129 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRN---SQLLMVLDHVNDPHNIG 148 Q +D+ + AVHQG+A P LD + L++ LD V DP N+G Sbjct: 130 ASRQDLDRHT-ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPALVVALDGVTDPRNLG 188 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RS AF G++ +R + +A K+++GA P R +NL A+++ G Sbjct: 189 AVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKAGLF 248 Query: 209 TIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL ++ L Q + + + L++GAEG GL +E + + M G ++LN Sbjct: 249 VVGLDAEGDVLLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGV 308 Query: 268 AAAVALYITQNHF 280 AA +ALY H Sbjct: 309 AAGIALYEVARHR 321 >gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] Length = 254 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 7/246 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98 + +YG H V AL R ++++L + A PV+ VP Sbjct: 2 DKKEGGAELVYGRHAVKEALL-AGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPA 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + +D++ + VHQG +P +LD + + L+VL ++ DP N+GAILR+A A Sbjct: 61 EALDRLTAR-GVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +G+I R + +A K+++G EH+ R++NL L+ + GF +G +D+ Sbjct: 120 VGVEGVIIPSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L + N+ + +++G E GL + + + + LN S AAAV LY Sbjct: 180 KVSLWEAEWNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEV 239 Query: 277 QNHFAK 282 K Sbjct: 240 LRRQMK 245 >gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 297 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 11/252 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKT 95 ++ + ++ G + V L + L+A+ +A R+ L PV Sbjct: 43 RAVKQAADAPEWVLGRNPVFECLRAKVPAVELLVASGIDADERVAESVRLAGNAGVPVTE 102 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIG 148 V +D+ A HQG+ L+ P + L++ LDH++DP N+G Sbjct: 103 VARFELDRRSS-GAPHQGIGLKVKPYEYRHPADLLVEAEDSGRPALMVALDHISDPRNLG 161 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G++ R S S +A+ ++++GA +P + NLT L++ G Sbjct: 162 AVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQDRGLL 221 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL ++ L+ + + +AL++G+EGKGL +E+ + + M G +++LNVS A Sbjct: 222 LVGLDAEGDTSLDDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLNVSVA 281 Query: 269 AAVALYITQNHF 280 V L Sbjct: 282 TGVVLGEIARQR 293 >gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 249 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66 Query: 109 AVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + IG D P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDESAMPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] Length = 246 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++YG+ V A+ K+F + L + + VP + +D+ Sbjct: 2 EKQTYIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ +P+ LD + + L ++LD ++D N GAI+R+A Sbjct: 62 LAKQHNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASC 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII K+ + +A K+++GA +P I++ +L DA+ + + G Q I + + Sbjct: 122 TGVDGIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L + A+++G+E G+ P + A + A L M G I +LNVS A V LY Sbjct: 182 KNDLYEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEA 241 Query: 277 QNHF 280 Sbjct: 242 VRQR 245 >gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] Length = 271 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108 L+G H V AAL NP+R +L T+ A+ + D DA LP PV+ + ++V K+ Sbjct: 36 LWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKD 95 Query: 109 AVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQGL L+ APL LD V + ++VLD V DPHN+GAILRS AF ++T Sbjct: 96 APHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQ 155 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R++P ES LAKSASGALE +P++R+ NL+ AL++M G+ IGL D K + Sbjct: 156 DRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALP 215 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 216 SGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257 >gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] Length = 253 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 11/248 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQ 99 L G+H + AL RK + +L +K+ ARL + PV+ Sbjct: 3 RKSEAVEILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTM 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILR 152 T+D + A HQG+A +P + + + ++ ++V++ + DP N GA++R Sbjct: 63 TLDALTD-NARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A+ D I+ K S S S ++++++GA+EH I+N L+++ + GF GL Sbjct: 122 TALCAGVDHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGL 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 PL + L++G E KG+RP ++ + L + + +LN S A +A Sbjct: 182 DGQGTTPLFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIA 241 Query: 273 LYITQNHF 280 +Y Sbjct: 242 MYEALRQR 249 >gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 321 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 17/252 (6%) Query: 37 NQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--H 89 Q++RH + + + G + V+ + L + +A R+ Sbjct: 62 QQRTRHRQKERSDNAEVIAGRNPVAECIRAGV-PASGLYVAQGIDADDRVTEAVRGAGSR 120 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVN 142 V V +D++ G A+HQGLAL+ + V L++ LD V Sbjct: 121 GISVVEVQRAELDRMTG-GAMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVT 179 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA++RSA AF G+I +R S +AV ++++G +P R NLT L+ + Sbjct: 180 DPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDL 239 Query: 203 HSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 S G +GL +DS ++ E+ + +++G+EG+GL +ET + M G ++ Sbjct: 240 KSEGLMVVGLDADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVE 299 Query: 262 ALNVSNAAAVAL 273 +LN S AA + L Sbjct: 300 SLNASVAAGIVL 311 >gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 260 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 5/251 (1%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+ S K ++ + L G V AL + I L T+ L Sbjct: 14 KRAASLKMK-KYRQKEGLFLLEGKRAVEEALASGW-TIRALFFTR--LPEGWEQQAENSS 69 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P VP + KI E Q +A +++VLD + DP N+G + Sbjct: 70 LPWYEVPLPVLQKITATED-PQSVAALVELRREELAAFAPERGMVLVLDRIRDPGNLGTL 128 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G++ + + + + +S G+L H+P + + G+ Sbjct: 129 IRTADALGAAGVVLLENTADLYNPKVVRSTMGSLFHLPVFTGVKTGELEEWCRQHGYALW 188 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + + + + +K AL+LG+E +G+ P+ A + M G ++LNV+ A Sbjct: 189 ATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVAVAGG 248 Query: 271 VALYITQNHFA 281 + ++ F+ Sbjct: 249 IVMFEAARAFS 259 >gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 269 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 27/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++ I +K H K R H Y F+ G+ VS A Sbjct: 1 MNYIQSSQNSTIKDIKSLHLKKNRDAHGLY-------------------FVEGIRFVSDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-----VKTVPPQTIDKIVGKEAVHQGLA 115 ++N I +++ ++ L L+ + L + VP + I + V QG+ Sbjct: 42 IDNGQ-SIAKIIISE-KLEGLNGGSELIEKVKGACSDISLVP-EKIFREVSDTQTPQGIL 98 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + +++LD + DP N G I+R+A A ++ +K S Sbjct: 99 AVIKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S G++ HIP N+T+ ++ + ++ I K QE + A+I+G Sbjct: 159 VLRSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E G+ +T A S+ + MPG ++LN S AA+V +Y Sbjct: 219 EANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262 >gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] Length = 264 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 104/248 (41%), Gaps = 11/248 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + + E + G + V A + K++ L ++ + + + Sbjct: 16 NENAEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGVVNSIVREAKKQDTVINYLSKD 75 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 ++++ + HQG+ A ++ + +LD + DPHN+GAI+R Sbjct: 76 KLNQM-SQAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDPHNLGAIIR 134 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A + K+++GA+ + P +++N++ ++++ G Sbjct: 135 TANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKERGMWFACA 194 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D + + + + L++G EG G+ +E + + M G I +LN S AA V Sbjct: 195 DMDGE-LMYKCNLTGSLGLVIGNEGNGVSRLVKEKCDYVVSVPMKGDIDSLNASVAAGVL 253 Query: 273 LYITQNHF 280 Y Sbjct: 254 AYEVVRQR 261 >gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 278 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 17/270 (6%) Query: 24 RRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA- 77 ++ R K+ ++ ++ R + + L G + V AL R I ++L + A Sbjct: 4 KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAK 62 Query: 78 --LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 PV+ + +D++ + HQG+ AP+ +LD V Sbjct: 63 EAALAPLLSLAREQGVPVRASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEE 121 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL++LD + DPHN GA+LR+A A G++ +R + +A +AK+++GA+EH+ Sbjct: 122 KGEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVR 181 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +RI N+ ++++ G +G + + + +++G+EGKGL +ET Sbjct: 182 VVRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETC 241 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M G I +LN S A A+ +Y + Sbjct: 242 DFLVRIPMHGAINSLNASVAGALLMYEARR 271 >gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] Length = 265 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPFAEVTPAGSFALIVGNEGSGVRQEILAKSD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] Length = 323 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 15/240 (6%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQT 100 PE + G + V L P+ ++ + T++ RL L + VP Sbjct: 78 GPETVL--GRNPVVECLRAGVPATALWVAVGTES-DDRLKESVQLAADAGISILEVPRTD 134 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ +HQG+AL+ P D + LL+ LD++ DP N+GA++RS Sbjct: 135 LDRLSA-NGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRS 193 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF G++ +R S S SAV ++++GA +P R +NLT L+ S G Q +GL Sbjct: 194 VAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLD 253 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ L+ + + +++G+EGKGL +E ++ + M G +++LN S AA V L Sbjct: 254 AEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVL 313 >gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] Length = 258 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL R+I + K A VK + +D + G Sbjct: 13 IVGRNAVIEALK-AGREIDTIFVAKGERAGSIGQIVSLAKERGIVVKDADSRKLDAMSG- 70 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+A T++ + + +++ D + DPHN+GA++R+A Sbjct: 71 GASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPHNLGALIRTAECAGAH 130 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ KR S S + +++K+++GA+ ++P R+SNL + ++ G G D + Sbjct: 131 GILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKERGIWVYGADMDGENWC 190 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G+EG+GL + + L M G + +LN S A + +Y Sbjct: 191 -ATDFSGGVALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQR 249 >gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+YG + V L + S KI Q+ + R +K V +T+ ++ + Sbjct: 4 FVYGKNVVKQMLMDNS-KIKQIYMS--VDDRDVEQLAHKQRVQLKRVDKKTLTQMTKTDR 60 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E P ++D + L+++LD + DPHN+GAILR+A A G+I Sbjct: 61 -HQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVI 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A +AK ++GA++ + ++NL+ L+ + G+ +G D + Sbjct: 120 FKKTNAVGLTATVAKVSAGAIDTVKCASVTNLSRTLEDLQKKGWWAVGTDMDG-QDYRSV 178 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + LI+G EGKG+ +E + L M G I++LN + +A + +Y N Sbjct: 179 KYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYN 233 >gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] Length = 258 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNA +L+ A + V Sbjct: 10 KEQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEA-AIAASGITPEEV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + + +VHQG ALE PL + V R + +++LD V DPHN+GAIL Sbjct: 69 DPRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +G Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLG 188 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +++ +E + ++ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 189 LAGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++KI + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L R I Q+ +N L +L L V V + + + E+ QGL E Sbjct: 40 LK-AGRSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKEVLKSLADSES-PQGLIAE 97 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + +D ++ ++L++V DP N+G ++R+A A +I + S + Sbjct: 98 VTKI-EEVIDF--SAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P +R++ D ++ G + + + + I ALI+G EG Sbjct: 155 RSMQGSNFHLPLVRMAK-EDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] Length = 298 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 127/284 (44%), Gaps = 14/284 (4%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 SK S+K +S K K R N + Y K + + + Q + ++G V L Sbjct: 10 SKPDSKKPYSRK--MENKKRENQKPYGK-KPYIKMPDVRKQIDEDLIWGRQPVLDLLQYS 66 Query: 65 SRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +K ++ ++ A + P + V +D++ E HQG + + Sbjct: 67 PQKCLKVWISERAHPSFSGEVMTLARSTKVPFQKVASTLVDEMCPGE-NHQGAVAKITMV 125 Query: 122 LS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 PTL LL+VLDH+ DPHN+GAI+R++ A ++ +KR S Sbjct: 126 EQLDMEDFLPTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGG 185 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + K ++GA +P I ++N+ + ++ GF +GL ++ + L DK +L++G Sbjct: 186 TVVKVSAGAALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPDKSSLVVG 245 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AEG+GL + + + + G +LN AAA+ ++ Sbjct: 246 AEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWAR 289 >gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 325 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 13/239 (5%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI 101 PE + G + V L P+ ++ + T+ + + + VP + Sbjct: 80 GPETVL--GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQRAADAGISILEVPRSDL 137 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ +HQG+AL+ P D + LL+ LD++ DP N+GA++RS Sbjct: 138 DRLSA-NGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSV 196 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R S S SAV ++++GA +P R +NLT L+ S G Q +GL + Sbjct: 197 AAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDA 256 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ + + +++G+EGKGL +E ++ + M G +++LN S AA V L Sbjct: 257 EGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVL 315 >gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++KI + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L R I Q+ +N L +L V V + + + E+ QGL E Sbjct: 40 LK-AGRSIKQIFVEENKLTKLTEMIGAEKSLTDLSVNLVSKEVLKSLADSES-PQGLIAE 97 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + +D ++ ++L++V DP N+G ++R+A A +I + S + Sbjct: 98 VTKI-EEVIDF--SAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P +R++ D ++ G + + + + I ALI+G EG Sbjct: 155 RSMQGSNFHLPLVRMAK-EDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] Length = 333 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 137/306 (44%), Gaps = 26/306 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ + R ++ + + + ++ ++G ++V AL Sbjct: 25 KGPTPKAEDRVYHKAYAAKKAADRRKMSDPRLAARRRADKFSTGNTTDLVFGRNSVLEAL 84 Query: 62 NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 PS ++ + + R H + +D+I + + HQG+ L+ Sbjct: 85 RVGVPSNTLYVMSRIEHDDRTREIVKIASAHGLRMMEADRLEMDRIA-RSSNHQGVILKV 143 Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157 P +L + + L + LD V DP N+GA++RSA AF Sbjct: 144 EPYQYSSLAELADRADKKSRAMEAANSAAARISARPLFIALDGVTDPQNLGAVIRSAAAF 203 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT A++ + + G+ +GL Sbjct: 204 GANGVILPERRSASVTAAAWKVSAGAAAHLPVCRVVNLTKAIEALKARGYYVVGLDGGGD 263 Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + E + D + ++LG+EGKGL +E ++A + + +++LN S AA ++LY Sbjct: 264 KLVGETGFETDPLVVVLGSEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLYAV 323 Query: 277 QNHFAK 282 N K Sbjct: 324 ANERRK 329 >gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPH--PFPVKTVPPQTIDK 103 +++ + H V A L + ++ K RL+ + + V+ +DK Sbjct: 3 KSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLNTLTSEFNNFGISVQRCTKIQLDK 62 Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+A E P + + N+ +++LD + DP N+GA LRSA A Sbjct: 63 L-SNHQTHQGVAAEILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACLRSANA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S ++++ K+++GAL + +++NL+ ++ + IGL Sbjct: 122 AGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIGLDGSV 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q A+I+GAEG GLR T+++ +A + M G +++LNVS A V L+ Sbjct: 182 NISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEV 241 Query: 277 QNHF 280 Sbjct: 242 NRQR 245 >gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31] gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31] Length = 278 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 10/258 (3%) Query: 17 DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70 SH + R RD++ N K +++G H V AAL+NP+R + Sbjct: 2 SSHSERNDRKKPSSPGRDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKR 61 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LLAT + RL + + + I + + AVHQG+AL+ + ++ + Sbjct: 62 LLATADRAKRLAPNLAKAPFLTI--MEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLG 119 Query: 131 NSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL++LD + DP NIGAI RSA AF G+I R++P+ + VLAK+A GA++ I Sbjct: 120 TPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIA 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Y R+ NL+ AL+++ G++ + L+ ++++ L+Q + L+LG+EG+G+R E Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHC 239 Query: 249 TSMAHLHMPGIIKALNVS 266 +M + MPG ++LNVS Sbjct: 240 DAMGKIAMPGGFESLNVS 257 >gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] Length = 257 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 9/246 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99 +P +YG + V L + + ++ T + + P + Sbjct: 11 APEPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLKIPCGKARME 70 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 + I G QG+ + TLD V +S LL++L + DPHN+GAI+R+A Sbjct: 71 KLTLISGTAKN-QGVCALLTSVTFYTLDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A + D +I + SA + K+++GAL H+ ++ +L L +H GF + Sbjct: 130 EAVAADSVIMIEGKGAPISATVHKASAGALSHMRVCKVKSLVKTLDLLHERGFSIVAADM 189 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ L++GAEGKGL +T++ + + M G +++LNVS AA V LY Sbjct: 190 EAEHNHTDIDWKRPTVLVMGAEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLY 249 Query: 275 ITQNHF 280 Sbjct: 250 EAMRQR 255 >gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 250 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 127/267 (47%), Gaps = 18/267 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + ++ + K+ +++KK+ + ++ + E + G H V AL + +I ++ Sbjct: 2 LKHIQSAKNPKI----KEWKKLLTKKERDK----TETFLVEGFHLVEEALK--ANQIAEI 51 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + ++N WD PV V + I ++ E QG+ + P+ + V+ Sbjct: 52 IISENKDMPPGWDYG---DIPVTMVTEEIIGQLADTE-TPQGIFAVCS--QEPSSEEVKG 105 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++ D V DP N+G ++R+A A D +I + + + + +SA G+ H+P +R Sbjct: 106 KRFLLI-DAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGSHFHLPVLR 164 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL+D + ++ G + ++ + + +D AL++G EG G+ + + Sbjct: 165 -GNLSDWIGRLKESKVPVYGTALENAREYTKYESSDSFALLVGNEGNGVNKELLANTAAN 223 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G ++LNV+ AA + LY + Sbjct: 224 LYIPIFGKSESLNVAVAAGILLYHLRK 250 >gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] Length = 258 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NPSR+ +L+ TKNA +L+ A + V Sbjct: 10 KEQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEA-AIAASGITPEEV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + + +VHQG ALE PL + V R + +++LD V DPHN+GAIL Sbjct: 69 DPRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +G Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLG 188 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +++ +E + ++ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 189 LAGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 249 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 12/248 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102 + + YGVH+V + L ++ L K RL L V+ +++ Sbjct: 2 AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61 Query: 103 KIVGKEAVHQGLALETAP---LLSPTLD-AVRNSQ--LLMVLDHVNDPHNIGAILRSAVA 156 K+ G HQG+ P L LD +R + LL+ LD V DPHN+GA +R+A A Sbjct: 62 KLAGL-PFHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSD 215 +I + S S + K A+G E + +I+++NL L + + IG D Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180 Query: 216 SKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PL++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 181 ESALPLQKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240 Query: 275 ITQNHFAK 282 ++ Sbjct: 241 EACRQRSE 248 >gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ R H V V + +D+I Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNYVARERLDQI 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + L++LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NLT A++ + G + Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLTAAMEDLKKKGMWFVCADM-GG 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 182 DIMYKVNLKGPIGLVVGNEGEGVGKLVREHCDMTASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 313 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 20/280 (7%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69 A++R+ H+ + + ++++ P + G + V AL P+ ++ Sbjct: 35 AEMRKGHKKNRIANAKSKQAVRRPAPRGRGGKGTSEMVVGRNPVVEALREGVPAVTLYVQ 94 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS------ 123 Q + + + P +D++ HQGL L+ P Sbjct: 95 QFIDNDERVREALQLVAERGGVHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHAEDL 153 Query: 124 -PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 AAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + + E +A+++G+EGKGL Sbjct: 214 TAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 313 >gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 307 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 15/286 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++ + ++ AK + R + + S ++ G + V AL Sbjct: 22 TPKAEDRTYH--KAYRAKQDQGPRKGTRPPHGAKPSSTGRGAAPDWVVGRNPVLEALQAN 79 Query: 64 -PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P R+ + ++ + R + H + VP Q +DK+ AVHQG+AL+ P Sbjct: 80 LPVRRAYVAEGSEHDDRLREIFKYAAEHSLSLLQVPRQELDKLTD-GAVHQGVALQLPPY 138 Query: 122 LSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +D V N LL+ D + DPHN+GAI+RSA AF DG+I +R S S + Sbjct: 139 EYADIDEVATKALGRDDNHGLLVACDGITDPHNLGAIIRSAAAFGADGVIIPERRSASLT 198 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 A K+++GA + +++NL L+++ GF GL+ ++ + N + L+ Sbjct: 199 ASAWKASAGAAARLRVAKVTNLNRGLERLAKAGFVIAGLAGEADTDIAGIPGVNGPLVLV 258 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+EG GL +E + + + +++LN S A A+ALY Sbjct: 259 VGSEGAGLSRMVREHCDVLVSIPITSEVESLNASVATAIALYEVSR 304 >gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] Length = 265 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + + Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKSD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 252 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 118/268 (44%), Gaps = 19/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S+K+ + +KK+ + + + + G H V A+ N + Sbjct: 2 KQIDSVKNPQV-------KAWKKLHNKKDRDKQ----GLFMVEGFHLVEEAIKN-KDCVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ ++ W+ + + V I K++ QG+ + + + Sbjct: 50 ELIIRESIEVPAQWNID---GIEITVVNEAII-KLLSDTETPQGIIAVC--FQTKHAEII 103 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q +++LD V DP N+G I+R+A A D II + + + +S GA+ H+P Sbjct: 104 HTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPI 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L + + + G G S + K +++ ALI+G EG G+ K E Sbjct: 164 VK-GDLLEMISLLKERGIAVYGTSLQNGKVYTCVKPSNEFALIVGNEGNGVSEKVLEQTD 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ A+ + LY + Sbjct: 223 QNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1] gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum PYR-GCK] gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1] Length = 314 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 13/252 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKT 95 RH + + G + V L P+ ++ L T +A RL + + Sbjct: 62 GRHKKTDDTEIVLGRNPVVECLRAGVPATALYVALGT-DADERLTESVQMAADRGISILE 120 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148 V +D++ +HQG+AL+ P D + LL+ LD+++DP N+G Sbjct: 121 VQRHDLDRMAA-NGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLG 179 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RS AF G++ +R S S +AV ++++GA P R +NL L++ G Q Sbjct: 180 AIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQ 239 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL + +++ +++G+EGKGL +E + + M G ++LN S A Sbjct: 240 VVGLDAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVA 299 Query: 269 AAVALYITQNHF 280 A V L Sbjct: 300 AGVVLAEIARQR 311 >gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 28/257 (10%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTV--PPQ 99 QPE ++G+H V+ L + +L R+ L H P+ PP Sbjct: 42 QPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIPLDRAGLPP- 100 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM-----------------VLDHVN 142 E HQG+A AP +L + + VLD + Sbjct: 101 -----AAAELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQ 155 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GA+LRSA AF DG+I K S S + K+A+G + R +NL AL + Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G S ++ L + L+LG E KG+RP ++ + + + +++ Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275 Query: 263 LNVSNAAAVALYITQNH 279 LNVS AA + L + Sbjct: 276 LNVSVAAGIMLVEIRRR 292 >gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 330 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 30/288 (10%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENL------------------FLYGVHTVSAALNN-- 63 R+ H + + ++ R + + G ++V AL Sbjct: 43 RKGHPKQRAANAALKRERDAKSRAGMRRSGAGSRSGRGGAGAAELVVGRNSVVEALQGGV 102 Query: 64 PSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 P+ ++ Q + R + A P+ P +D++ G HQGL L+ P Sbjct: 103 PATALYVQQFLDTDDRVRDAFQAANERGVPLMEAPRAQLDQMTG-GLNHQGLVLQVPPYE 161 Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 D + L++ LD V D N+GA++RSA AF G++ +R + +A Sbjct: 162 YAHPDDLLEGAADAGQDALIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAG 221 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILG 234 K++SGA +P R +NLT AL+ G +GL++D + + + + N + ++ G Sbjct: 222 AWKTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGEAEIGDLDALNGPVVIVAG 281 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +EGKGL ET + + MPG ++LN AA + LY AK Sbjct: 282 SEGKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLRAK 329 >gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 317 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 114/274 (41%), Gaps = 13/274 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS----RKIFQLLATK 75 +AK R + K+ R + N + G + V AL + Q + + Sbjct: 45 HAKQRVANARAKQAARRPAPRRGGGKGTNELVVGRNPVVEALREGVPASMLYVQQFIDSD 104 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 + A + P +D++ HQGL L+ P + + Sbjct: 105 ERVREALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLLDAAAE 163 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G P Sbjct: 164 EGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247 R +NLT AL+ G +GL +D + E+ + + ++ G+EGKGL ET Sbjct: 224 VARATNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLSRLVAET 283 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + MPG ++LN A V LY H + Sbjct: 284 CDVLVRIPMPGGAESLNAGVATGVVLYEVVRHRS 317 >gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] Length = 256 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 15/243 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107 YG+H + A L L + + + ++ + ++ G Sbjct: 8 YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQSIMAQARDNGISIQPTQKDKLTQLCGS 67 Query: 108 EAVHQGLALETAPL---LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L PL LD + R+ LL+VLD + D HN GA LR+AVA D + Sbjct: 68 -PQHQGVVLNARPLGFADEGLLDTLAGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE 221 I K ++ S + +AK + GA E +P + ++NL L K+ + G G + ++ KP+ Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIH 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQ 277 K A+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 187 AADLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246 Query: 278 NHF 280 Sbjct: 247 RQR 249 >gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 320 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 10/253 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKT 95 + ++ + + G ++V AL +AT+ ++ R+ L P+ Sbjct: 69 RGPRRTKGSSEIVAGRNSVVEALRADIPVSTMFVATRIDSDDRVKEALKLATERGLPILE 128 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAI 150 P +D++ AVHQGLAL+ P + + L++ LD + DP N+GAI Sbjct: 129 APRGELDRLTD-GAVHQGLALQVPPYEYADPRDLVDPEQPGVPLIVALDGITDPRNLGAI 187 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RS AF G++ +R S +A K+++GA IP + NLT AL+ GF + Sbjct: 188 VRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDFKRAGFFVL 247 Query: 211 GLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL D L + + + + ++ G+EGKGL +ET + + M +++LN A Sbjct: 248 GLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVESLNAGLAT 307 Query: 270 AVALYITQNHFAK 282 VALY + Sbjct: 308 GVALYEIARQRRR 320 >gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614] gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp. JS614] Length = 314 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 15/272 (5%) Query: 17 DSHYAKLRRNHRDYKKM-QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + H+ K+ +S ++ + + + ++ G ++V AL + + + Sbjct: 39 KAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSVVEALRAGV-PVTGVYVAE 97 Query: 76 NALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 A R + ++ V +D++ G AVHQGLA P D + + Sbjct: 98 GAERDGRLREAFATAAERRLNIQEVSRGELDRMTG-GAVHQGLAARIPPYEYAHPDDLLD 156 Query: 132 -------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++ LD V DP N+GA++RSA F G++ +R S +A K+++GA Sbjct: 157 AAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAA 216 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243 +P + NL L+ G +GL++D L + + +++G+EG GL Sbjct: 217 ARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ET + + M +++LN AA+VALY Sbjct: 277 VSETCDQLVSIPMANQLESLNAGVAASVALYA 308 >gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 246 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ T + + F YG H V AAL NP R + ++ T+ AL LD LP P+ Sbjct: 2 KRGNRTGKAKGTFPRFYGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150 + ++V +A HQG+ E PL L V + + ++VLD V DPHN+GAI Sbjct: 58 ADGADLGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ I Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++++ L + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter propionicigenes WB4] gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter propionicigenes WB4] Length = 255 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 13/250 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVP 97 ++ +PE ++G+ V A+ I ++L ++ L+R + A PV+ VP Sbjct: 5 KNKRRPEKDMIFGIRAVIEAIQAGKE-IDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + ++K+ K HQG +P+ ++ + ++VLD V D N GAI Sbjct: 64 LEKLNKMTVK--NHQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+ D I+ + S + K+++GAL IP R NL +AL+ + S G + + Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + K + + IA+I+GAE +G+ P M + M G I +LNVS AA Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241 Query: 271 VALYITQNHF 280 V +Y Sbjct: 242 VLIYEAVRQR 251 >gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 267 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN IS ++ I K++++ +K ++ Q F+ G+ V A Sbjct: 1 MNFISSSQNPVI------------------KEIKALKEK-KYRDQTGLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 L +I ++L + + + V T+ + ++ E QG+ Sbjct: 42 LK-EKIEISKILVSDKLADVHGGKEILEQLENSNCCNVYTLTNKLYMEVTDTE-NPQGIL 99 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 N +VLD + DP N+G I+R+A A G+I +K + Sbjct: 100 AILNKKSISLESVYDNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPK 159 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S G+L HIP N+ L++M + G + K + D IA+I+G Sbjct: 160 VLRSTMGSLFHIPICYSENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYKDNIAIIVGN 219 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E G+ + + + M G ++LN S AA + +Y Sbjct: 220 EANGISDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLR 262 >gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205] gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205] Length = 249 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 12/240 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDSLEKLAGM- 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + IG D K P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q + + +++GAE GLRP TQ + M G +++LNVS A +ALY Sbjct: 187 QQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQR 246 >gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDK 103 E LYG+H V AA + I + K A+L ++ V + +D+ Sbjct: 3 EPELLYGLHAVRAAAACDADAIEAVWVEKGRRDAKLVRVLRSLEGRGLRIQRVSRKQLDE 62 Query: 104 IVGKEAVHQGLALETA---PLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + VHQG+A+ PL LDA + L+VLD V DPHN+GA LRSA A Sbjct: 63 LT-EGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + + + V+ K +SGA +PY +++NL L + G +G + ++ Sbjct: 122 AGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDRGIWLVGAAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL +GAEG+GLR T+E + H+ M G +++LNVS A V L+ Sbjct: 182 GAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEA 241 Query: 277 QNHF 280 Sbjct: 242 LRQR 245 >gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] Length = 265 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I S+++ + +KK+Q+ ++ F+ G H V AL + Sbjct: 13 KNIDSVQNPRV-------KQWKKLQTKKERDTK----GLFFVEGFHLVEEALKAG--VVT 59 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ + DW N + VP + I K++ + QG+ + Sbjct: 60 ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ H+P Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL + + K+ G + ++ P + ALI+G EG G+R + Sbjct: 173 VK-GNLEEWVDKLKESNVSVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKTD 231 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G ++LNV+ AA + Y Q+ A Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263 >gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] Length = 316 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 19/275 (6%) Query: 24 RRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-- 77 R H +K+ ++ + + + ++ G + V L L N+ Sbjct: 44 RPYHPAHKRAKTAAKPAGRGAPRRKEDGPEYVLGRNPVLECLRAGV-PATALYVASNSEP 102 Query: 78 LARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 R+ + + V +D++ +HQG+AL+ D + Sbjct: 103 DERVAEAVKIAGDAGIALLEVGKPELDRL-STNGLHQGVALQVPEYTYAHPDDLLAAAKA 161 Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL+ LD++ DP N+GA++RS AF G++ R S S +AV ++++GA +P Sbjct: 162 SGTPALLVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLP 221 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +NLT L+ G Q +GL +D L+ +++G+EGKGL +E+ Sbjct: 222 VAQATNLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVGSEGKGLSRLVRESC 281 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281 S+ + M G +++LN S AA V L + Q A Sbjct: 282 DSILSIPMAGDVESLNASVAAGVVLAEFARQRRQA 316 >gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp. PRwf-1] Length = 261 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 26/253 (10%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALAR-----------LDWDANLPH--PFPVKTVPP 98 YG+H + A L++ L + + + L ++ Sbjct: 8 YGIHAIHALLSHRPTDAMALFIQQGRAHKDSSTQDEADSTFEEILQLAEQMGVSIQEASR 67 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRS 153 + + G HQG+ L PL + + L +VLD + D HN+GA LR+ Sbjct: 68 DKLTALCGS-PQHQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRT 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A D +I K +S S + +AK + GA+E +P I ++NL ++ + G G + Sbjct: 127 AAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTA 186 Query: 214 SDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSNA 268 D+ K L K+A+I+G+EG+G+R T E + ++ M G ++LNVS A Sbjct: 187 LDATAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVA 246 Query: 269 AAVALYI--TQNH 279 + LY Q H Sbjct: 247 TGMVLYEVSRQRH 259 >gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter diazotrophicus PAl 5] Length = 321 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 1/233 (0%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +LYG+H AAL NP R+I Q+LAT++ A L N P P ++ + G+ Sbjct: 86 TYWLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGR 145 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AVHQG+A+ L S ++ + L++LD V DP N+GAILRSA AF ++ + Sbjct: 146 DAVHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME 205 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R +P E+ LAK+ASGALE +P +R+ NL L + S F +GL + Sbjct: 206 RNAPDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQ 265 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY Sbjct: 266 RRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELVRR 318 >gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 248 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 12/240 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLEKLAGL- 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + F + +G D K P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +A+++GAE GLRP TQ ++ M G +++LNVS AA +ALY Sbjct: 187 QKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246 >gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 314 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 18/280 (6%) Query: 18 SHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + A+ R NH+ YK + ++ R + ++ G ++V L I L Sbjct: 37 TPRAEERPNHKVYKMKNAATKREAARPRRKTGDVAEWVAGRNSVLELLKATV-PIHGLYV 95 Query: 74 TKN--ALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R+ L V + +DK+ G AVHQG+A + + Sbjct: 96 AEGTERDERMREIFKLAADQHVSLLEIGRVELDKLTG-GAVHQGIAAKLNAYDYADPRDL 154 Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L+++LD V DP N+GA++RSA F G++ +R + +A K+++G Sbjct: 155 LALAAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAG 214 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 A +P R++NLT L+++ G IGL++D L ++ + + +++G+EGKGL Sbjct: 215 AAARVPVARVTNLTRTLKELQEEGLMVIGLAADGDVELPSSQMLDGPVVVVIGSEGKGLS 274 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + + M +++LN AA +ALY Sbjct: 275 RLVGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQRG 314 >gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] Length = 246 Score = 229 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105 + G + V AL R I ++ + + V++VP + ID + Sbjct: 4 EIIGGKNPVLEALRAD-RDINKIWIAEGVQKKGITELLQLAKDKGVIVQSVPKKKIDGLT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+A A +LD + ++LD + DPHN+G+I+R+A A Sbjct: 63 --DTNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPHNLGSIMRTADAIG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + + V+AK+++GA+EH+P +RI+NL+ + ++ G G + Sbjct: 121 VHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKRGVWIAGTDAKESV 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+I+G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 181 DYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240 >gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 316 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 13/272 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 99 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M ++LN S AA V L + Sbjct: 278 VVSIPMAAQAESLNASVAAGVVLAEIARQRRR 309 >gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 313 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 13/256 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPV 93 Q+ R + + + G + V AL P+ ++ Q + + A + Sbjct: 59 QQRRGGGRSSSELVVGRNPVVEALREGVPASTLYVQQFIDNDERVREALQLAAERGGINL 118 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 P +D++ HQGL L+ P + + L++ LD V DP N Sbjct: 119 MEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLVAGAHDEDEDPLIVALDGVTDPRN 177 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA++RS AF G++ +R + +A K+++G P R +NLT AL+ G Sbjct: 178 LGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAG 237 Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL++D + + + + +++G+EGKGL ET + MPG ++LN Sbjct: 238 IVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNA 297 Query: 266 SNAAAVALYITQNHFA 281 AA + LY Sbjct: 298 GVAAGIVLYEAARRRG 313 >gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON] gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis 50-1 BON] Length = 249 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 ++ + G + V AL + + I+ ++ V+ + +DK Sbjct: 5 KDSDIIEGRNPVIEALKSGRLIKIIYIAAGSRGKTVDCIKSLAQSRGISVQEIERVQLDK 64 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 A HQG+ AP ++ + +++LD + DPHN+GAI+R+A Sbjct: 65 RSATGA-HQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAEC 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A + K+++GA+E+I ++N+ ++++ G +G Sbjct: 124 MGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWIMGADMRG 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + P I LI+G EG G+R +E + + M G I +LN S AA + +Y Sbjct: 184 R-PCRSMDLKGPIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMYE 241 >gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205] gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola CNS-205] Length = 372 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 13/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94 + + ++ L G + V +L I L + N+ R+ + Sbjct: 118 RRSNPAKDAPELLVGRNPVLESLRANVPAI-ALYVAQGLNSDDRISEIVRTAADRGIAML 176 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 V +D++ G +HQG+ L+ P + + + + LL+ LD V DP N+G Sbjct: 177 EVSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLG 235 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G+ +R + +A ++++GA +P +++NLT AL+ GF Sbjct: 236 AVIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFV 295 Query: 209 TIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D + L + + +++G+EG+GL ET + M +++LN S Sbjct: 296 VVGLDADGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASV 355 Query: 268 AAAVALYITQNHFA 281 AAAV L A Sbjct: 356 AAAVTLAEVARRRA 369 >gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 249 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 11/253 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+ + K + + G H AL K +L+ ++NA + WD Sbjct: 8 NNPQIKQWRKLLAK-KERDKTGMFLAEGYHLAEEALK--GEKAIELIISENAELPVRWDY 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV V + I + E QG+ +P +V+ S L++ D V DP Sbjct: 65 G---ELPVTMVTDEIIKSLSDTE-TPQGVIAVCKEEKTPA--SVKGSTFLLI-DAVQDPG 117 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A D +I K + + + +SA G+ H+P IR +L + + ++ Sbjct: 118 NLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSAQGSHFHLPIIR-GSLNEWMDRLEEE 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + ++ P ++ + AL++G EG G+ P+ ++ + G ++LNV Sbjct: 177 EIPVYGTALENGSPYKETHPAGRFALLVGNEGSGVSPELLARTDKNLYIPIYGKSESLNV 236 Query: 266 SNAAAVALYITQN 278 + AA + LY +N Sbjct: 237 AVAAGILLYYLKN 249 >gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 246 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 11/246 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + +YG+ V AL K+F + L R PV+ VP + ++ Sbjct: 2 QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ +P+ + + + L ++LDH++D N GAI+R+A Sbjct: 62 RLTKK--NHQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR S S +A K+++GA+ +P ++ NL DA+ + G + + + Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L E + A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VVRQRG 245 >gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 251 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 16/243 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106 G H V A L + + +L R D A ++ + ++K G Sbjct: 9 GFHAVEALLRHRPEAVLELFVQDTRADRDDPRLAALMQAAKDFGIAIQRARREVLEKHAG 68 Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + QG+ P L LD LL+VL++V DPHN+GA LRSA A Sbjct: 69 PQN--QGIVARARPRRPLDESALLQWLDGKPAKPLLLVLENVTDPHNLGACLRSADAAGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK- 218 +I +R + + V ++A GA E + Y I NL L ++ G +G + + + Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLAYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +A+++GAEG GL+ T++ + + M G +++LNVS A V L+ + Sbjct: 187 SLFTFQAPESLAVVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246 Query: 279 HFA 281 + Sbjct: 247 QRS 249 >gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] Length = 258 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 139/239 (58%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ T+NAL RL DA + Sbjct: 10 KEQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEIS 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL +L V +++LD V DPHN+GAIL Sbjct: 69 DPRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ +R++ E+ LAK+ASGALE PY+R+ NL D++ ++ G+ +G Sbjct: 129 RSAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLG 188 Query: 212 LSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +++ +E+ ++ + +AL++GAEG GLR KT+ET + + +LNVSN Sbjct: 189 LDGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247 >gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 262 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84 ++ K++ +KS+ ++ + GV P ++ ++ ++ A + + Sbjct: 6 SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143 L ++ + + V QG+ D + L+VLD++ D Sbjct: 63 NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GII +K + + +S G++ +P++ + +L +A+ K+ Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G T D K ++E K A ++G EG GLR + + A + + M G +++L Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRIPMQGQVESL 241 Query: 264 NVSNAAAVALYITQNHF 280 N + A +V ++ T Sbjct: 242 NAAIATSVLMFETARQR 258 >gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] Length = 310 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 20/267 (7%) Query: 33 MQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 M+ NQ R PE +YG + V+ L + S L+A A A + Sbjct: 42 MEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTA 101 Query: 87 LPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137 L VK V P + + G E+ HQG+A + + T+D + + L++ Sbjct: 102 LAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAAAKDKGEAPFLVL 160 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + Sbjct: 161 SDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGE 220 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM- 256 ++++ G D L + IAL+LG+EG G+ ++ + L M Sbjct: 221 TIRRLKEQGVFVYCADMDG-VSLRRNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMA 279 Query: 257 -PG-IIKALNVSNAAAVALYITQNHFA 281 PG + + NVS AA + LY Q+ A Sbjct: 280 APGTGVDSYNVSVAAGIILYEIQSQRA 306 >gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] Length = 249 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 + LYG+H V AL R+ + +++ D VKT P Q+ K Sbjct: 2 KTELLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKT-PDQSFFK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G++ QG+A + L+ + +++D +NDP N GA++R+A+ Sbjct: 61 --GQDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCA 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I + S S ++K+++GALEH+P R+ NL ++Q + G GL + + Sbjct: 119 GVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARAS 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A+++G EGKGLRP ++ + + G + +LN S A A+++Y Sbjct: 179 GTVWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMYEVM 238 Query: 278 NHF 280 Sbjct: 239 RQR 241 >gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 249 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 11/237 (4%) Query: 38 QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 +K+ +++P+ F YG H V+AAL NP+R + ++ T+ AL LD LP P+ Sbjct: 2 KKTHRSAKPKGAFPRFYGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLPIVY 57 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAI 150 + ++V +A HQG+ E PL L + + + ++VLD V DPHN+GAI Sbjct: 58 SDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNVGAI 117 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES VLA++ASGALE +P++R+ NL AL ++ G+ I Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGYWRI 177 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL ++ + + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 178 GLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234 >gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] Length = 402 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 15/264 (5%) Query: 21 AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77 A LR +H K+ ++ ++ + + E + G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97 Query: 78 LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 RL + V +D++ +HQG+AL+ P D + Sbjct: 98 DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 157 QPPALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 277 EVVSIPMAAQAESLNASVAAGVVL 300 >gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] Length = 246 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103 E + G + V A + + I +L K + + V + +D+ Sbjct: 3 EEFTIEGRNAVLEAFRSG-KTIDKLYVQKGVQDGPIQSIIREAKKKDTILNFVERERLDQ 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + +E HQG+ A ++ + L +LD + DPHN+GAI+R+A Sbjct: 62 M-SEEGHHQGVIAHAAAYEYAEVEDLLKAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANL 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + +A +AK+++GAL + P +++NLT ++++ G + Sbjct: 121 AGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEELKKRGMWFVCADMGG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + I L++G+EG G+ +ET +A + M G I +LN S AA V Y Sbjct: 181 EV-MYRLDLKGPIGLVIGSEGNGVGKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEI 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 313 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 20/280 (7%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNNPS----RKIF 69 A++R+ H+ + + ++ + P + G + V AL + Sbjct: 35 AEMRKGHKKNRIATAKTKQVQRRPAPRGRGGKSASEMVVGRNPVVEALREGVPATMLYVQ 94 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 Q + + A + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVREALQLAGERGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153 Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 SAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241 P R +NLT L+ G +GL++D + L + E + +++G+EGKGL Sbjct: 214 TAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDLEALAGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA V LY Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRRG 313 >gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis SJ95] Length = 240 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 10/239 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +++YG + + + + + T+ + + + P + ++K+ Sbjct: 1 MYIYGKNILKEIIEARY-PVKHIFFSSSKTERGSLKEIVEDVANLGYSYSFSPNEVLEKM 59 Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ ++ LD + + L++LD + DPHN GAI+R++VA D Sbjct: 60 ALTNK-HQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDA 118 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K + + V+ K +SG + IP I+++NL++ ++ + G + K P Sbjct: 119 IIIPKDNAVEVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGK-PYY 177 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + KI L+ G EG G+R + + + M +++LNVS ++ + L+ + Sbjct: 178 EIDWQGKICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQR 236 >gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 235 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 12/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 ++YG V A+ N ++ ++ KNA + + V TV + ++++ G Sbjct: 3 YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAGT 60 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQ + + L+ + + + +LD + DPHN GAI RS F D Sbjct: 61 -KNHQAVVALVSDFEYIELEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDA 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R + + + + KS++GA+ I ++SN++ ++ K+ GF + + + Sbjct: 120 IIFPNRRAATVNDTVVKSSAGAIYDIDVCKVSNISQSIDKLKEAGFWIYATDLEGE-DIR 178 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K A+++G EGKG+ + + + +LN S AAA+ +Y + Sbjct: 179 ECDFSGKAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235 >gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 380 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 15/264 (5%) Query: 21 AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77 A LR +H K+ ++ ++ + + E + G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97 Query: 78 LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 RL + V +D++ +HQG+AL+ P D + Sbjct: 98 DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 157 QPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 277 EVVSIPMAAQAESLNASVAAGVVL 300 >gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] Length = 264 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 13/240 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPH--PFPVKTVPPQTID 102 +++YG + V L RK+++LL + +A L+ +L ++ V +D Sbjct: 19 GRVYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERSILD 78 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ A HQG+ +E + +++ +R +++LD + DP N G +LR+A Sbjct: 79 RLT-HGANHQGVVIEASEFSYSSIEDLLASGELRGKD-ILMLDSLQDPQNFGTLLRTAEV 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD- 215 F +I + S + + ++SGA EH+ +++NL K+ +G+ +GL D Sbjct: 137 FGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEYDE 196 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S + I L++G+EG G+R ++ + + G I +LN + A ++ALY Sbjct: 197 SSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIALYE 256 >gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8] gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8] Length = 238 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 11/236 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +++YG + V AL + ++L + L + P VP +D ++ + Sbjct: 1 MWIYGRNPVLEALRAGRAR--RVLVARGVEGWLLKELERL-GAPYTLVPRIELDTLL-RT 56 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A E +L+ + LL+ LD V DP N GA++RSA+A G Sbjct: 57 THHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ +R + S + K+++GA +P +++ NL L+ + G GL +K Sbjct: 117 VVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPW 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G+EG+G+R +ET + + + ++LN S A +ALY + Sbjct: 177 ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQAR 232 >gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 230 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + + A+ N R I++L + + + + + ++ + Sbjct: 1 MIIYGKNVIKEAVLN-KRPIYKLYLDEKSSDSKFINFLENNNISYELTNKGQLNNLTD-N 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 AVH G+ + LD V + Q ++LD V DPHN+GAILRS A + DG+I + Sbjct: 59 AVHNGVVADVKDYQYLELDVVLDKTRRQRFLMLDEVQDPHNLGAILRSVEATNYDGVIIS 118 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K++ + V+AK++SGA+EH+ I +SNL + K+ F +G + ++ ++ K Sbjct: 119 KKHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIPK 178 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N + +I+G EG GLRP ++ + + M G + +LNVS A A+ LY T Sbjct: 179 NQNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYET 229 >gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] Length = 249 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + A PV+ VP + +++ Sbjct: 4 KSEIIFGVRAVIEAVEAGKE-IDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNR 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ + + ++ + + ++LD V D N GAI R+ Sbjct: 63 VTRK--NHQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + S S +A K+++GAL +P R +L ++ + GF+ + + Sbjct: 121 GGVDAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q I LI+G+E KG+ + + + G I++LNVS AA V +Y Sbjct: 181 DYNYTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 306 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ ++ AK R R ++ +K + + + G ++V AL Sbjct: 26 TPKAEDRVYH--KAYKAKQERLKRAAQQQARKKKK-----EHGSNMVAGRNSVLEALREG 78 Query: 65 SRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + A R +A P+ +D+I A+HQG+AL+ P Sbjct: 79 I-PATTLYVARRIDADERVRDIIEAASDRGIPMLEAGKPDLDRITD-GAIHQGVALQVPP 136 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 D + LL+ LD + DP N+GAI+RS AF G+I T+R + S + Sbjct: 137 YEYAHPDDLLSLARDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMT 196 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232 A K+++GA IP ++ NL A+ + G +GL + L + E+ + + L+ Sbjct: 197 AAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGLDMNGDVELPKLELAREPVCLV 256 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+EGKGL ++ + + + ++LN AA VALY Sbjct: 257 VGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVAR 302 >gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDK 103 ++ ++G + V L + L+ ++N R +L P + V +DK Sbjct: 3 KKDSLVFGRNAVIELLKSGHPVNKVLINSENRSNRNADILSLMKERGVPYQFVERAVLDK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156 G + HQ + TA + + N ++VLD + DPHN+GA+LR+A A Sbjct: 63 FSGGDK-HQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPHNLGALLRTADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII R S + +AK+++GA+E++P R+ NL AL+++ G G + Sbjct: 122 AGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNLVQALKQLKKAGCWVTGAEAGG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + L++G E KGL +ET + L M G + +LN S A ++ +Y Sbjct: 182 R-DVFSADLSGPRVLVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEV 240 Query: 277 QNHF 280 + Sbjct: 241 RRQR 244 >gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 315 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 18/276 (6%) Query: 21 AKLRRNHRDYKKMQ-----SFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 A+ R H K+ + ++ R E + G + V L P+ ++ + Sbjct: 41 AEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVG 100 Query: 74 TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 N RL L + VP +D++ +HQGLAL+ P D + Sbjct: 101 ADN-DERLTESVALAADAGIAILEVPRPDLDRM-STNGLHQGLALQIPPYKYAHPDDLLA 158 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA Sbjct: 159 RARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAA 218 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P R +NLT L+ G +GL + L+ IA+++G+EGKGL Sbjct: 219 ARLPVARATNLTRTLKDWQDKGITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLV 278 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++T ++ + M G +++LN S AA V L Sbjct: 279 RKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314 >gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 322 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS---------RHTSQPENLFLYGVHTVSAALNN--PSR 66 + A+ R H +++ ++ ++K+ ++ G + V L P+ Sbjct: 38 TPKAEDRTYHPAHRRAKAASRKAEGAQQRRRQAQKQADGPEYVVGRNPVLECLRAGVPAT 97 Query: 67 KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++ + + +A RL +L + VP +D++V +HQG+ L+ P Sbjct: 98 ALYVAIGS-DADERLTEAVHLAAGKGISILEVPRTDLDRMVS-NGMHQGVGLQVPPYQYT 155 Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + LL+ LD++ D N+GA++RS AF G++ +R S S +AV Sbjct: 156 DPADLLDMAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAW 215 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++++GA +P R +NL L G Q +GL ++ L+ +++G+EG Sbjct: 216 RTSAGAAARLPVARATNLNRTLLDWAKAGVQLVGLDAEGDVSLDDYDGTGPTVIVVGSEG 275 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 KGL +E S+ + + +++LN S AA V L + Q + Sbjct: 276 KGLSRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQRRVKR 322 >gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] Length = 323 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 20/296 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRD--YKKM-------QSFNQKSRHTSQPENL-FLYGV 54 ++ K DS A ++HR Y+ +KSR + Q + G Sbjct: 24 QGQQPHKRKKRADSREACGTKDHRSGGYRPRDIRTSDDTRGARKSRTSRQKSAFDLIEGR 83 Query: 55 HTVSAAL--NNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAV 110 V+ AL N P + +++ ++ A PV+ VP Q +D + Sbjct: 84 RAVAEALALNIPLKNALVQVSSGERDQEIETLAKQLSSDGVPVERVPRQVLDALSS-HGA 142 Query: 111 HQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+ + T P L + L++VLDHV D N GAI+RSA G++ Sbjct: 143 HQGVIVRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIA 202 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + K+++GA+ H+P R+SN++ AL+++ + GF T G + + + Sbjct: 203 NARAAQVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAAGFWTCGATEHAADDVWSAPL 262 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++AL++G+EG G+ ET L G I++LNV+ A V Y + Sbjct: 263 GGRLALVMGSEGAGISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRRVS 318 >gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii L2-6] Length = 268 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 15/264 (5%) Query: 31 KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + M ++ + QP N +YG + V+ L + S LLA A A + + Sbjct: 4 RNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAMAK 63 Query: 90 --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140 VK V P + + G E+ HQG+A + + T++ + L++ D Sbjct: 64 EAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLSDG 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + ++ Sbjct: 123 IEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIR 182 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 ++ G D L + IAL+LG+EG G+ ++ + L M Sbjct: 183 RLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTAQG 241 Query: 259 -IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 242 TGVDSFNVSVAAGIILYEIQSQRA 265 >gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] Length = 265 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 15/262 (5%) Query: 31 KKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDA 85 K+ + K R + + G + V AL R+I +L K+ + D Sbjct: 2 KQKHNAGAKPREGRGENADAFVIVGKNPVREALRTG-RQIDKLYVMKDNRDHVLGDLIDQ 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVL 138 V +V + + HQG+A TAP +L +A ++V+ Sbjct: 61 AKKRRIIVHSVDKAKLAALAD-GGHHQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVM 119 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DHV DPHN GAI+RSA G+I R S S +AV K+++GA+ +++ NL Sbjct: 120 DHVLDPHNFGAIVRSANLCGAHGVIFPDRRSASVTAVSMKASAGAMNATSMVKVGNLARC 179 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ + + GF + P K+AL++G+EGKG+ P ++ A + G Sbjct: 180 LETLKAQGFWVAAADM-AGAPYYTRDFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYG 238 Query: 259 IIKALNVSNAAAVALYITQNHF 280 I + N S AA + + Sbjct: 239 SIDSFNASVAAGILMAEAARQR 260 >gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB056] gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB058] gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB059] gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] Length = 249 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66 Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPTLNEKDLDQLLTETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + IG D P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ A++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 12/247 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQT 100 S+ + +++YGV+ V + S + ++ +KN +++L L VK V Sbjct: 2 ESKDKLMYIYGVNPVLESFK-ISDALKEIYISKNRISKLKEILRLAEEKSISVKIVEETF 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 I+KI + VHQG+ + P + TLD ++LD V DP N G+I R Sbjct: 61 IEKIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICRI 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K+ S + K+++GA+ H+ + I+N+ A++ + G Sbjct: 119 ADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGAE 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +K + + LI+G+EGKG+R + + M G I +LNVS A+A+ Sbjct: 179 AQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALIT 238 Query: 274 YITQNHF 280 + Sbjct: 239 FEVLRQR 245 >gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter sp. 1501(2011)] Length = 262 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 27/254 (10%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------------PFPVKTVP 97 YG+H + A L + L + + +A ++ Sbjct: 8 YGIHAIHALLTHRPTDAMALFVQQGRSGKEGNNAAEEADSTFEEILQLAEQMGVSIQQAS 67 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILR 152 + + G HQG+ L PL + L +VLD + D HN+GA LR Sbjct: 68 RDKLTALCGS-PQHQGVVLNARPLAMADEGEIATLAKAEDALFLVLDQITDAHNLGACLR 126 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A D +I K +S S + +AK + GA+E +P I ++NL ++ + G G Sbjct: 127 TAAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGT 186 Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSN 267 + D + K L K+A+I+G+EG+G+R T E + ++ M G ++LNVS Sbjct: 187 ALDETAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSV 246 Query: 268 AAAVALYI--TQNH 279 A + LY Q H Sbjct: 247 ATGMVLYEVSRQRH 260 >gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] Length = 253 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + I ++ + +A + D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-MITEVYISNSAKDKETAQIIDLCRQRGVVVKFVDRNKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAREFEYCDTDDILLEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YECDFTIPACIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 316 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 12/273 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 +D Y K + ++ ++ + + G ++V AL N + + Sbjct: 39 RAEDRTYHKAHSAAKASERRSGGRPTGGRKAKASSEVVAGRNSVLEALRNDV-PVTTMYI 97 Query: 74 ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R P+ P +D+I AVHQGLAL+ P + + Sbjct: 98 AGRIDSDDRVREALKIATERSLPILETPRGELDRITD-GAVHQGLALQVPPYEYAHPNDL 156 Query: 130 RNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L++ LD + DP N+GAI+RS AF G++ R S +A K+++GA Sbjct: 157 IDPELPGIPLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243 IP + +NLT L+ GF IGL + L + E+ N+ I +++G+EGKGL Sbjct: 217 ARIPVAQCTNLTRTLEDYRKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +ET + + M +++LN A V LY Sbjct: 277 VRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309 >gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] Length = 260 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 11/255 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVK 94 N +S + L + G + V A + P K+F L ++ R H + Sbjct: 8 NNRSENGQIENTLIIEGRNAVLEAFRSGKPIDKVFILDGCQDGPIRTIVREAKKHDTILN 67 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + ++ + HQG+ A + + ++LD++ DPHN+ Sbjct: 68 FVEKERLAQL-SETGKHQGVIAYAAAYEYAEIEDMFKLAEEKGEDPFFILLDNIEDPHNL 126 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+A G+I KR + +A +AK+++GAL + P +++NL ++++ G Sbjct: 127 GAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGL 186 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + I L++G EG+G+ +E +A + M G I +LN S Sbjct: 187 WFVCADMGGE-SMYKMNLTGPIGLVVGNEGEGVGRLVKEKCDFVAAIPMKGEIDSLNASV 245 Query: 268 AAAVALYITQNHFAK 282 AA V Y + Sbjct: 246 AAGVLAYEIVRQRLQ 260 >gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 99 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300 >gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Mississippi] Length = 244 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAV-HQG 113 AAL NP+R +L T L + A + V V + I KI+G + HQG Sbjct: 2 CIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQG 61 Query: 114 LALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +AL L +R + +++LD V D +N+GAI+RSA F D +I Sbjct: 62 IALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + K L + Sbjct: 122 LPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEI 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY + Sbjct: 182 SFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQL 238 >gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] Length = 320 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 119/275 (43%), Gaps = 18/275 (6%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNP-SRKIFQ 70 + A+ R H+ YK S R P + + G + V AL Sbjct: 36 TPKAEDRPAHKAYKGGASGGGPRRGGGGKGARKAPGSDQVAGRNAVLEALREDVPATQLT 95 Query: 71 LLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 ++ +A R+ L PV +D++ +VHQG+AL P + Sbjct: 96 VMVRLDADERVREIMRLATARGLPVAEASRTDLDRMTD-HSVHQGVALTIPPYEYADVQD 154 Query: 129 VR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + LL+ LD + DP N+GAILRSA AF G+I +R S S +A + K A+ Sbjct: 155 LLRIAEERFEPPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAA 214 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGL 240 GA + +++NL L + +GL ++ E+ L++GAEGKGL Sbjct: 215 GAAGRVRVAQVTNLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGL 274 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + + M G ++LN S AAA+ALY Sbjct: 275 SRLARDICDQVVSIPMGGRAESLNASVAAAIALYE 309 >gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] Length = 246 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 132/221 (59%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG H V AAL NP R + ++ T++AL LD LP P+ + ++V +A H Sbjct: 18 YGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVYSDVADLGRMVPSDAPH 73 Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QG+ E PL L V + + ++VLD V DPHN+GAILRSA AF I+T Sbjct: 74 QGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ IGL ++++ L + I Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114] Length = 248 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 11/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104 N +++G+H A L + ++ K RL N F ++ +P +T+D Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P L LD + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++GAE + K +T + + M G + +L VS A+ + L+ Sbjct: 182 DVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAV 241 Query: 278 NHFA 281 A Sbjct: 242 RQRA 245 >gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B] gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus cellulolyticus 11B] Length = 250 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 14/249 (5%) Query: 45 QPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + E+ + G + AL + R + + + + ++ V + + Sbjct: 3 RSEDTLIGGRNPAVEALRSGVPVRRVLLADGIDSDRRVQEIRERCEHDGIEIRVVARREL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 D++ G HQG+ + P + R LL+ +D V DP N+GAI+RSA Sbjct: 63 DRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRNLGAIVRSAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF G++ KR + + + K+++GAL +P R++N+ L + +GLS+D Sbjct: 121 AFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERNVTVVGLSAD 180 Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++Q + +AL++GAEG+GL +E T +A + M G +++LNVS A +A Sbjct: 181 GDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESLNVSVATGIA 240 Query: 273 LYITQNHFA 281 L++ + Sbjct: 241 LFVLSQRLS 249 >gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 262 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 144/237 (60%), Gaps = 5/237 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 +MQ R T P ++ L+G H V AAL NP+R +L AT+ +A LD + LP F Sbjct: 16 RMQGGRGSGRAT--PGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLDGE--LPPDF 71 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAI 150 PV+ + ++V ++A HQGL LE L +D + + +++LD V DPHN+GAI Sbjct: 72 PVEYADVTDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA AF I+T R++P ES V+AKSASGALE +P++R+ NL AL + G+ I Sbjct: 132 LRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRI 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 GL+ +++ L + + +AL+LGAEG+G+R + ++A L + I++LNVSN Sbjct: 192 GLTGNTEATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248 >gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 232 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 12/224 (5%) Query: 65 SRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 R I ++ + A ++ + ++ P + +D++V E HQG+ + A Sbjct: 4 GRDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAY 61 Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L+ + ++LD + DPHN+G+I+R+A A GII KR + +A Sbjct: 62 QYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTA 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +AK+++GA+E+IP R++NL+ + + G G + K N I L++G Sbjct: 122 AVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWIAGTDARGKTDYRNLDGNMPIGLVIG 181 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +EGKG+ E + +L M G + +LN S AA++ +Y Sbjct: 182 SEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYR 225 >gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 210] Length = 324 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 99 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300 >gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] Length = 250 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTID 102 E + G + V A + I +L K+ + V V + ++ Sbjct: 7 TEEFIIEGRNAVLEAFR-AGKTIDKLYVQEGIKDGPVQSIIREAKKQDTIVNFVSRERLN 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ +E HQG+ A ++ + + +LD + DPHN+GAI+R+A Sbjct: 66 QM-SQEGRHQGVIAHAAAYEYAEVEDILKAAEEKGEPPFIFLLDGIEDPHNLGAIIRTAN 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR + +AV+AK+++GAL + P +++NL ++++ G + + Sbjct: 125 LAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVTNLAATIEELKEKGLWFVCADMN 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + I L++G+EG G+ +E +A + M G I +LN S AA V Y Sbjct: 185 GE-LMYRLNLKGPIGLVIGSEGDGVGRLVREKCDMVASIPMKGDIDSLNASVAAGVLAYE 243 Query: 276 TQNHF 280 Sbjct: 244 IVRQR 248 >gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 257 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 12/246 (4%) Query: 41 RHTSQPENLFLYGV---HTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVK 94 + + EN +LY HT +AL N +R+ +LLAT+N + V+ Sbjct: 2 KSSKTNENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVR 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGA 149 V + ++ +V K A HQG+AL AP+L ++ +S +++LD V D HNIG+ Sbjct: 62 LVENKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGS 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR++ F+ + ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ Sbjct: 122 ILRTSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWC 181 Query: 210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G ++K+ +++ K +I G+E KG+R +E + + + +I +LNVSNA Sbjct: 182 YGFDCNAKENIDEIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNA 241 Query: 269 AAVALY 274 AA+ LY Sbjct: 242 AAIGLY 247 >gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] Length = 257 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 107/256 (41%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + +KS+ ++ + + G+ P ++ ++ +++ + + Sbjct: 6 SNPQVKNLLQLQKKSKVRNEEQVFIVEGLRMFMEV---PQDQVKKVYVSESLYNKKKEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144 +L FPV+ + + + V QG+ D + + + +VLD++ DP Sbjct: 63 HLER-FPVEVLADKVF-QHVSDTKTPQGILCVVKQRKYEIEDLISKENPHFIVLDNLQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A + + + +S G++ +P++ + +L L K Sbjct: 121 GNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDDLLALLDKFQK 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 T K ++E A+++G EG GLR + E A + M G +++LN Sbjct: 181 KKVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQIPMQGKVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 + AA++ ++ Sbjct: 241 AAIAASILMFEVYRQR 256 >gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] Length = 257 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V AL + +++ K A + + I ++VG Sbjct: 9 LIYGVHPVLEALRREGNAVEEVIVVKGRRAPWFEEVKALAQKYGVRFRLADQTWIKRLVG 68 Query: 107 KEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ T P + L + LL+V D + DP N+G +LR+A A Sbjct: 69 P-VNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAVGA 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ K + ++V+ K+A+GA+ H+P R++NLT A+ G IG + + + Sbjct: 128 QGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATASQT 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278 L +AL++G EG+GLRP+ ++ + + M G + +LN + A AV +Y Sbjct: 188 LYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMYEIYR 247 Query: 279 HFA 281 A Sbjct: 248 QRA 250 >gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 262 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84 ++ K++ +KS+ ++ + GV P ++ ++ ++ A + + Sbjct: 6 SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143 L ++ + + V QG+ D + L+VLD++ D Sbjct: 63 NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GII +K + + +S G++ +P++ + +L +A+ K+ Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G T D K ++E K A ++G EG GLR + A + + M G +++L Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRIPMQGQVESL 241 Query: 264 NVSNAAAVALYITQNHF 280 N + A +V ++ T Sbjct: 242 NAAIATSVLMFETARQR 258 >gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] Length = 322 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 12/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL 71 + ++ R R + S+ ++ G + V AL P+ ++ Sbjct: 44 HKDKARTERIEREDRTGRPSSPRTPVRGRRSEDAPEYIGGRNPVLEALRAGVPASTLYIA 103 Query: 72 L-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 L + + H + V + +D++ + A+HQG+AL+ P + + Sbjct: 104 LRIDNDDRVKESVRIAADHGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLI 162 Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD V DP N+GAI RSA AF G++ R S + K+++G Sbjct: 163 GIAQDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGT 222 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242 L H+ R +NLT L++ G IGL +S + + + + + +++G+EGKGL Sbjct: 223 LAHLTVARAANLTATLREYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSR 282 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +E+ + + M ++LN AA VALY H + Sbjct: 283 LVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHRRR 322 >gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] Length = 322 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 99 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300 >gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 316 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 99 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300 >gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] Length = 241 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 118/235 (50%), Gaps = 11/235 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 +YG + V AL + + ++ K + + NL P+K V I+K+VG Sbjct: 5 IYGKNAVLEALKSNI-PLNKIYIAKGIHFDNKFNEILNLAKEKGVPIKYVERSVIEKMVG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + QG+ + + + + N +++VLDH+ DPHN+GAI R++ I Sbjct: 64 GNS--QGVLAIISSVPYREWEDIEKTLNNKSVIVVLDHIQDPHNLGAIARTSEFAGASAI 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S ++ K+++GAL +IP +R+SN+ + L+++ G+ +G D++ Q Sbjct: 122 VIPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKKKGWFIVGADLDTENLYNQ 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+E +GL +E+ + + G +++LNVS A + LY + Sbjct: 182 VNYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIR 236 >gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] Length = 243 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q E + ++G H AA+ NP R I + + A + I KI Sbjct: 2 QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61 Query: 105 VGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G++A+HQG+A+ T P L L L+M+LD + DP N+G ILRS+ AF D Sbjct: 62 CGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ + + L Sbjct: 122 AIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274 + +K+A +LG+EGKG+ + + M ++NVSNAAA+A++ Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237 >gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440] gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica CNB-440] Length = 373 Score = 227 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 13/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94 + + ++ L G + V +L I L + N R+ + Sbjct: 119 RRTNPAKDAPELLVGRNPVLESLRANVPAI-ALYVAQGLNTDDRISEIVRTAADRGIAML 177 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 V +D++ G +HQG+ L+ P + + + + LL+ LD V DP N+G Sbjct: 178 EVSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLG 236 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G+ +R + +A ++++GA +P +++NLT AL+ GF Sbjct: 237 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFV 296 Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D + L E + +++G+EG+GL +T + M +++LN S Sbjct: 297 VVGLDADGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASV 356 Query: 268 AAAVALYITQNHFA 281 AAAV L A Sbjct: 357 AAAVTLAEVARRRA 370 >gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 318 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 16/277 (5%) Query: 18 SHYAKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 + A+ R H+ Y+ + N++ +R + G + V AL P ++ L Sbjct: 38 TPKAEDRPGHKAYRAANAANKRDQARQKKADRPELIAGRNPVVEALRADVPGTALYVAL- 96 Query: 74 TKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 + R++ L + +P + +D+ A+HQGL L+ P D + Sbjct: 97 NIDIDDRVNEAVRLAGDKGISILEIPREELDRKT-NRAMHQGLGLQVPPFEYAHPDDLMQ 155 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 N+ L + LD V DP N+GA++RSA AF G++ +R S +AV ++++G Sbjct: 156 AARDSGNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTA 215 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243 +P +NLT L+ S G +GL +D ++ E+ D + ++LG+EG+GL Sbjct: 216 AKLPIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGLSRL 275 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET + + M +++LN S AA V L Sbjct: 276 VRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312 >gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A + K+F L ++ R + + VP + +D+I Sbjct: 4 EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQI 63 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A + L++LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NLT ++ + G + + Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 -LMYKMNLKGSIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] Length = 238 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +++YG + V AL ++ ++L + A L + VP +D ++ + Sbjct: 1 MWIYGRNPVLEALKEG--RVRRVLVARGVEAWLLRELE-KLGAEYTLVPRIELDTLL-RS 56 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQGLA E L+ A + LL+ LD + DP N GA++RSA+A G Sbjct: 57 THHQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ +R S S + K+++GA +P +++ NL AL+++ G GL K Sbjct: 117 VVSEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPR 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL+LG+EG+G+R +E+ + + M ++LN S A +ALY Sbjct: 177 ELDFQRPLALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALYAVA 232 >gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 310 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 127/270 (47%), Gaps = 12/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A +R NH K+ ++ ++ + E + G + V L P+ ++ L + A Sbjct: 41 AHMRPNHPAAKRAKAAPRRPVRSRIDEAETVLGRNPVLECLRAGVPATALYVALGAE-AD 99 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 R+ + VP +D++ +HQG+AL+ P D + Sbjct: 100 ERVTESVARAADSGISILEVPRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDT 158 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 218 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + + ++ +D + +++G+EGKGL ++ Sbjct: 219 RATNLTRTLKDWADRGLRVIGLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 278 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 279 VVSIPMAGRAESLNASVAAGVVLAEIARQR 308 >gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 320 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 23/284 (8%) Query: 19 HYAKLRRNHRDYKKMQSFN-----QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL 71 H+ + ++ R ++ S Q+ + L G + V AL P+ ++F L Sbjct: 35 HWYEGKQRARAARRPDSGGGARGPQQGERRRADASDLLVGRNPVVEALRAGMPATRLF-L 93 Query: 72 LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV----GKEAVHQGLALETAPLLSPT 125 + + R++ A + V V +D+ A HQGLAL+ P Sbjct: 94 ANSLDPDERVNEAARIAGERGLDVLEVTKTELDRRCESNGQPGAAHQGLALQVRPYQYRA 153 Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +A+ L++ LD V DPHN+GAI RSA AF+ G++ +R S + K Sbjct: 154 PEALLDTALESDTPALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWK 213 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEG 237 +++G L +P + +NLT AL+ G +GL + P+ + E+ + +++G+EG Sbjct: 214 TSAGTLARLPVAQATNLTRALEGYKKEGVFVVGLDAGGDTPIPDLELATGPLVIVIGSEG 273 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 KGL +E +A + + G ++LN S AA V+LY + Sbjct: 274 KGLSRLVREACDVVASIPI-GNAESLNASVAAGVSLYEVARRRS 316 >gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 248 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENARRKGIEVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG HQG+A A L + A + LL+VLD V DPHN+GA LRSA Sbjct: 63 G-VGGSVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S +A + K+++GA + +P + ++NL L+++ G GL+ + Sbjct: 122 AAGVTAVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + +AL+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 182 AETSLYAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] Length = 323 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 18/283 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNN--PSRKIF 69 + K + +R M K R + + G + V AL + P+ ++ Sbjct: 38 KAEDRKKHKANRIANAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPATTLY 97 Query: 70 --QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 Q + + A + P +D++ HQGL L+ P + Sbjct: 98 VQQFIDNDERVRDALKLAGERGNINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPE 156 Query: 128 AVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ L++ LD V DP N+GAI+RS AF G++ +R + +A K++ Sbjct: 157 DLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKG 239 +G P R++NLT ALQ G +GL+++ ++ + +++G+EGKG Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDLDALGGPVVIVVGSEGKG 276 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L E + + MPG ++LN AA V LY A+ Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAARKRAQ 319 >gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 245 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + A+ KI+ N L++ V VP + + K+ + Sbjct: 7 IYGTRAIIEAIQAGKEIGKIYLQKGLSNPLSKELEKLIREQGISVSYVPQEKLYKLS--D 64 Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ +A L ++LD + D N GAI+R+AV D Sbjct: 65 QNHQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K + K+++GA+ +IP ++ ++ DAL + G Q + + ++ + Sbjct: 125 IIIPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 185 DLDYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244 Query: 282 K 282 K Sbjct: 245 K 245 >gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5] gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5] Length = 371 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L P+ ++ + + + Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIIRTAADRGIAILE 176 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGA 149 V +D++ G +HQG+ L+ P D + + + LL+ LD V DP N+GA Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295 Query: 210 IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L E + +++G+EG+GL ET + M +++LN S A Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355 Query: 269 AAVALYITQNHFA 281 AAV L + Sbjct: 356 AAVTLAEVARRRS 368 >gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7] Length = 247 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ + + V + +D++ Sbjct: 8 IEGRNPVIEAYRSGKTIDKLFVLDGCQDGPVKTITREARKQHTIISYVSKERLDQLSETH 67 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++D + + +LD + DPHN+GAI+R+A G Sbjct: 68 -HHQGVIAIAAAYDYASVDDILAKAREKGEEPFIFLLDGIEDPHNLGAIIRTANLAGAHG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A +A++++GAL P +++NL A+ ++ G + + Sbjct: 127 VIIPKHRAVGLTATVARTSAGALNFTPVAKVTNLGAAMDELKKEGLWFVCADMKGEVMYR 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 187 Q-NLTGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 307 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 27/279 (9%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 SLK + + H D +K+ + + L G + V AL R+I ++ Sbjct: 37 SLKVARERENTGGHADTEKIATREDR-----------LEGRNPVIEALR-AGRQIDKIWV 84 Query: 74 TKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 R + + V VP +D + A HQG+ + A + + Sbjct: 85 QAMGDGRRPEPTLAGIVNMAISSGAVVNQVPRSVLDNMSQTGA-HQGVIAQAAVIPYVDI 143 Query: 127 DAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D + + +++ D + D +N+GAILR+A + G++ K + AV AK+ Sbjct: 144 DEILAVAAAKQEDPFIIIADEIQDSYNLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKA 203 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++GA+ H+P R++NL + + G GL+ D + + + IAL++G EGKG Sbjct: 204 SAGAVNHVPCARVNNLVQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKG 263 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + M G++ +LN + A +A++ T Sbjct: 264 ISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLR 302 >gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 + G + V L R + +L ++N + L + ++ +D + G Sbjct: 7 VIGRNAVRETLK-AGRNVNKLYISENHDSGLVSIIKMAKSKGISIQKTNNHKLDSMSGST 65 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + +L + L+++LD++ DPHN GAI+RSA DG Sbjct: 66 -HHQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R S S + KS++GA+EHI +SN+ + + G +GL + + Sbjct: 125 VIMQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGEN-YY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL++GAEGKGL +E ++ + + +LN S AA + L+ Sbjct: 184 DMDYDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEA 238 >gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] Length = 249 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66 Query: 109 AVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LD + LL+ LD V DPHN+GA +R+A A + Sbjct: 67 PFHQGVVAAVRPHPTLNEKDLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PL 220 I + S S + K A+G E + +I+++NL L + + IG D P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ A++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032] gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris AB-18-032] Length = 373 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 13/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLP--HPFPVK 94 + + ++ L G + V AL L + R++ + Sbjct: 119 RKSNPAKDAPELLVGRNPVLEALR-AQVPATALYTAQGIDMDDRVNEIIRTAADRGIAIL 177 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 + +D++ G +HQG+ L+ P + + +++ LL+ LD V DP N+G Sbjct: 178 EISRAELDRMTG-GVLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLG 236 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 237 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFM 296 Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D + L E + +++G+EG+GL +T + M +++LN S Sbjct: 297 VVGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASV 356 Query: 268 AAAVALYITQNHFA 281 AAAV L A Sbjct: 357 AAAVTLAEVARRRA 370 >gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] Length = 325 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D + AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232 K ++GA +P R +NL AL++ G+ +GL PL + + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + A+ Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324 >gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides DSM 266] Length = 252 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 8/250 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +K + Q E + +YG + V L I ++ N + + Sbjct: 2 EKEKDMEQQEKV-VYGRNAVLELLLKKPDSIEKIYFQFNTSHPKLKEILVSARRQKLVTG 60 Query: 98 PQTIDKIV--GKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAI 150 ++++ HQG+ + + T++ V + LL++L + DPHNIGAI Sbjct: 61 KARLERLSLMAGTTKHQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAI 120 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A + D ++ + +A + K+++GAL H+ ++ +L L+ +H F I Sbjct: 121 IRTAEAVAADAVLLIEGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLII 180 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D++ +A++LGAEG GL P+ + + M G +++LNVS A Sbjct: 181 AADMDAEINYTDIDLTKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAG 240 Query: 271 VALYITQNHF 280 V LY Sbjct: 241 VLLYEAMRQR 250 >gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 6/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q E + ++G H AA+ NP R I + + A + I KI Sbjct: 2 QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61 Query: 105 VGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G++A+HQG+A+ T P L L + L+++LD + DP NIG ILRS+ AF D Sbjct: 62 CGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ L ++ L Sbjct: 122 ALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274 + +K+A +LG+EGKG+ + + M ++NVSNAAA+A++ Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237 >gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 296 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78 A LR +H K+ ++ ++ + L G + V L P+ ++ L T+ A Sbjct: 15 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 72 Query: 79 ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 RL + V +D++ +HQG+AL+ P D + + Sbjct: 73 ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 131 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 132 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 191 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 192 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 251 Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273 + + M ++LN S AA V L Sbjct: 252 VVSIPMAAQAESLNASVAAGVVL 274 >gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] Length = 314 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 27/292 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAA 60 + K ++++ +H + RD RH + + G + V Sbjct: 31 KGPTPKAEDRVYHA--AHKRANEKRRRD---------SGRHERKGDGTELVVGRNPVVEC 79 Query: 61 LNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L+ P+ + L T N RL + P++ VP +D + G +HQG+ L Sbjct: 80 LHAKVPAAALIVALGTDN-DERLQESVRIANSRGIPIREVPRHELDTMTG-NTMHQGIGL 137 Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + +++ + L++ LD++ DP N+GA++RS AF G++ +R S Sbjct: 138 QIPSYKYSSVEDLIDSVAKTGEPGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRS 197 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + + V ++++G +P R +N+ +L++ G+Q +GL + L+ + Sbjct: 198 AAITGVAWRTSAGTAARLPVARATNMVRSLKQFQKAGYQIVGLDAGGDHTLDTYDGTTPV 257 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +++G+EGKGL ++T ++ + M G +++LN S AA V L + Q Sbjct: 258 VVVVGSEGKGLSRLVRDTCDTIMSIPMTGWVESLNASVAAGVTLSEFARQRR 309 >gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 15/262 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89 MQ+F + R+ + N ++G+ V A+++ I L + L + H Sbjct: 1 MQNFQRHDRNEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKALIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 + VP + +++I K HQG+ +P+ ++ + + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRITRK--NHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALYI--TQNHFAK 282 LNVS +A V LY Q K Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259 >gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] Length = 250 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 + G++ VS AL R+I ++ + R PV++V + + Sbjct: 5 IEGINWVSEALK-AGRQIHRIYVDDSRKDRRVESILAHAHKRGIPVESVGKNQLRSMSAS 63 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + QG+ +P ++ + L++LD V DP N+GAI+R+A Sbjct: 64 GS-PQGVVALASPYHYWPIEDILEFTQSRGEQPFLILLDGVEDPQNLGAIIRTAECAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +S + + ++++GA+EH+ ++NL A++++ G +G + + Sbjct: 123 GIVLPLHHSVKVTPAVGRASAGAVEHMKIALVTNLVRAIEELKQGGLWIVGADAMANHTY 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+ G EG+G+R +E + + M G + +LNVS A A+ + Sbjct: 183 FEVSLAAPLALVFGGEGRGIRRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQR 242 >gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] Length = 251 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 7/238 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ ++G + V AL L+A + + D V+ P Q ++++ Sbjct: 7 QSYVIWGRNPVIEALVAGQSMEKILIAHDSKAPKELLDLAKERGIKVQIAPRQKLEELAN 66 Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + QG+ +P+ + + +VLDH+ DP N+G+I R+ F G Sbjct: 67 TKKT-QGVVAILSPITYVPEEELFRKTIEEKGFFVVLDHITDPQNVGSIARTVEVFGGIG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +AV+ KS+SGA+ H+ + +++ A++ G L K + Sbjct: 126 LLIPKDRSAPINAVVVKSSSGAIFHLKISKTPSISKAIKTFKEMGGWVYALE-KGGKDIT 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++LG+EG+G+ E + + M G + +LNVS A A+ L+ + Sbjct: 185 KVDFAYPMCIVLGSEGEGVSKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKN 242 >gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] Length = 371 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 13/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94 + + ++ L G + V +L L + + R+ + Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRT-QVPATALYTAQGIDVDDRVKEIVRTAADRGIAIL 175 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 V +D++ G +HQG+ L+ P D + + + LL+ LD V DP N+G Sbjct: 176 EVSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLG 234 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 235 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFV 294 Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D + L E + +++G+EG+GL ET + M +++LN S Sbjct: 295 VVGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASV 354 Query: 268 AAAVALYITQNHFA 281 AAAV L + Sbjct: 355 AAAVTLAEVARRRS 368 >gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeovibrioides DSM 265] Length = 249 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 7/241 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV- 105 + +YG + V L I ++ N + + ++K+ Sbjct: 7 QENIVYGRNAVLELLREKPGSIEKIYFQFNTTHPKLKEILITARRQKLITGKARLEKLSL 66 Query: 106 -GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ + + T++ + + LL+VL ++DPHNIGAI+R+A A + Sbjct: 67 IAGTTKHQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAA 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG++ + +AV+ K+++GAL H+ ++ +L +L+ +H+ G + I +++ Sbjct: 127 DGVVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETN 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A++LGAEG GL P+ E + M G +++LNVS A V LY Sbjct: 187 YTDADFRLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQ 246 Query: 280 F 280 Sbjct: 247 R 247 >gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 268 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 6/252 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPF 91 +QS QK ++ + + G+ V AL + + I +L+ L + + + +P Sbjct: 16 LQSLLQK-KYRDREGKFLVEGLRFVQEALQSGA-DIEELILAAGVLEKNPSFQSIIPDKI 73 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAI 150 P+ + Q KI E QG+A D V + L+++D V DP N+G I Sbjct: 74 PITIIADQLFKKITDTE-TPQGIAALVRKKEFRAEDLFVVANPFLLIIDKVQDPGNLGTI 132 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G+ K + + ++ G++ H+P I ++ +A G + I Sbjct: 133 IRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIINFDSIEEACHLAKKHGLKLI 192 Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S ++ +AL++G E +G E + + MPG ++LNVS AA Sbjct: 193 VTDISKDSSSYLAVDYSEPVALVVGNEARGASSFAIENSDYRVAIKMPGKAESLNVSVAA 252 Query: 270 AVALYITQNHFA 281 + L+ A Sbjct: 253 GIILFEAARQRA 264 >gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] Length = 336 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 18/261 (6%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVK 94 Q+++ +P + G ++V AL K + R+ L P+ Sbjct: 66 QRTQRRGRPSEEMVTGRNSVVEALRAGIPAKALYIAVRIEVDDRVKEVLKLASERGIPLM 125 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------------RNSQLLMVLDHV 141 +D++ +AVHQGLAL+ P P + +NS L++ LD + Sbjct: 126 ETHKPELDRMTD-DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGI 184 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI+RS AF+ +I +R S +A K+++GA +P R NL AL+ Sbjct: 185 TDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALES 244 Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G+ +GL D L + + + +++G+EGKGL +E + + + + Sbjct: 245 FKGMGYFVLGLDGDGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAM 304 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN S A + LY + Sbjct: 305 ESLNASMAVGITLYEIARQRS 325 >gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126] gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126] Length = 245 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I S + L+R HR + L G H A Sbjct: 1 MEIIQSKQNASIKSARKL----LQRKHR-----------------KTSYLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R + + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGADILQVFVLEEMANR------VANMAKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QSQALPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R + D ++ G + + SD + + AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-ILDMVEACKKQGVPVLATTLSDISVDYKAVKTDGNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 209 ISQDMAESADQLVHISMPGQAESLNVAVAAGILMF 243 >gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040] gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040] Length = 262 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 7/236 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E ++L+G+H V AL NP R+ +L+ T NA +L+ DA + V P+ + Sbjct: 25 ETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKLE-DAIATSGITPEVVDPRKFSVPID 83 Query: 107 KEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +VHQG ALE PL L+ +++LD V DPHN+GAILRSA +I Sbjct: 84 PGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 143 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ Sbjct: 144 GTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEA 203 Query: 224 IKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY + Sbjct: 204 VAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYAS 259 >gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] Length = 238 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +++YG + V AL + ++L + L + + VP +D ++ K Sbjct: 1 MWIYGRNPVLEALREGRAR--EVLVARGVEGWLLKELDRL-GASYTLVPRIELDTLL-KT 56 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A +L+ LL+ LD + DP N GA++RSA+A G Sbjct: 57 THHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYGAMIRSALALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ +R + S + K+++GA +P IR+ NL AL+++ G GL +K Sbjct: 117 VLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVWVYGLDLKGEKAPR 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL++G+EG+G+R +E+ + + + ++LN S A ++ALY Sbjct: 177 ELDFKRPLALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASVALSIALYQAA 232 >gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 318 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 16/277 (5%) Query: 18 SHYAKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73 + A+ R H+ Y+ + ++ +R + + G + V AL P+ ++ L Sbjct: 38 TPKAEDRPGHKAYRSANAATKRDQARQKKADKPELIAGRNPVVEALRAGVPATALYVALN 97 Query: 74 TKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 + R++ L + +P + +D+ AVHQGL L+ P D + Sbjct: 98 IE-IDDRVNDAVRLAGDKGISILEIPREELDRKT-NRAVHQGLGLQVPPFEYAHPDDLMA 155 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L + LD V DP N+GA++RSA AF G++ +R S +AV ++++G Sbjct: 156 AARNSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTA 215 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243 +P +NLT L+ + G +GL +D +++ E+ D + ++LG+EG+GL Sbjct: 216 AKLPIAVATNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRL 275 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET + + M +++LN S AA V L Sbjct: 276 VRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312 >gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aurantiacus J-10-fl] gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 15/247 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH--PFPVKTVPPQTIDK 103 LYG + V +L R +L +++ + NL PV+ + QT+D+ Sbjct: 3 TELLYGRNAVRESLRARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDR 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-------DHVNDPHNIGAILRSAVA 156 + ++A HQG+ LE P LD N+ DH+ DP NIG +LR+A A Sbjct: 63 RL-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 C G++ R + + + ++SGA+EH+ ++NL ++++ G +GL D Sbjct: 122 VGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDE 181 Query: 217 -KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274 + ++ + +AL++GAEG G+ +E + L + G + +LN + A ++A+Y Sbjct: 182 QAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIYH 241 Query: 275 -ITQNHF 280 Q H Sbjct: 242 AWRQRHR 248 >gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] Length = 376 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 13/254 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVK 94 + + ++ L G + V +L P+ ++ + R++ + Sbjct: 122 RKSNPAKDTPELLVGRNPVLESLRAQVPATALYTAHGIE-IDDRVNEIVRTAADRGIAIL 180 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 + +D++ G +HQG+ L+ P + + + + LL+ LD V DP N+G Sbjct: 181 EISRAELDRMTG-GVLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLG 239 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 240 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFM 299 Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +GL +D L E + +++G+EG+GL ET + M +++LN S Sbjct: 300 VVGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASV 359 Query: 268 AAAVALYITQNHFA 281 AAAV L A Sbjct: 360 AAAVTLAEVARRRA 373 >gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] Length = 249 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 13/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIV 105 + YGVH+V + L ++ L K RL L V+ ++K+ Sbjct: 5 EYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDRLEKMA 64 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 G HQG+ P L+A+ LL+ LD V DPHN+GA +R+A A Sbjct: 65 GL-PFHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTAAAMGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKK 218 + +I + S S + K A+G E + +I+++NL L ++ + + +G D K Sbjct: 124 EAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTMLDEKA 183 Query: 219 -PLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL+Q + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 184 LPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMALYEA 243 Query: 277 QNHFA 281 Sbjct: 244 CRQRN 248 >gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D + AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232 K ++GA +P R +NL AL++ G+ +GL PL + + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + AK Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324 >gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1] gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii RW1] Length = 247 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G H V AAL NP R + +L T+ A++ L+ LP PV + ++V +A H Sbjct: 18 WGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTYADAADLGRLVPHDAPH 73 Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QGL +E PL L + + + L+VLD V DPHN+GA+LRSA AF GI+T Sbjct: 74 QGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAVLRSAAAFDAVGIVTQD 133 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES LA+SASGALE +P++R+ NL AL ++ GF IGLS ++ L Q + + Sbjct: 134 RHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRIGLSGHARGTLAQVMGD 193 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +IA++LGAEG+G+R T+ +A L + +++LN+SN Sbjct: 194 SRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234 >gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] Length = 245 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + +YG+ + AL K+F + L + PV+ VP + ++ Sbjct: 2 QEQETQIYGIRALIEALKAGKTIDKVFLQKGLQGGLYKELMPLLQAAQVPVQYVPVEKLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ +P+ + + + L +VLDH++D N GAI+R+A Sbjct: 62 RLTKK--NHQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR S S +A K+++GA+ +P ++ NL DA+ + G + + + Sbjct: 120 CTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVATTEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 180 TNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYE 239 Query: 276 TQNHF 280 Sbjct: 240 VVKQR 244 >gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 5/181 (2%) Query: 105 VGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 7 ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 66 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG Sbjct: 67 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 126 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 127 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQ 186 Query: 280 F 280 Sbjct: 187 R 187 >gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] Length = 323 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 9/261 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWD 84 R+ ++ +R ++ + L G H V+A L I Q+ ++ R + Sbjct: 49 RERSDRTERSRPARIRTEAGTVVLAGFHAVAARLKLDPESIQQVYVDPERRDKRMREMRE 108 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLD 139 V +D + + HQG+A A + LD + + LL++LD Sbjct: 109 KLFAAGVRVMNADAARLDGL-SPDVPHQGIAAIAAERENTLDFADLLDQITDRTLLLILD 167 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GA LR+A A +I + S + AK+A+GA E +P + ++NL A+ Sbjct: 168 GVTDPRNFGACLRAADAAGVQAVIVPRDRSARMTPAAAKAAAGAAETVPVVSVTNLASAI 227 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ G G + ++ + + A +LGAEG+GLR T+ +A + M G Sbjct: 228 MELRDNGVFVAGTAGETDTTIYDVAQARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGS 287 Query: 260 IKALNVSNAAAVALYITQNHF 280 +++LNVS A+ + L+ + Sbjct: 288 VESLNVSVASGICLFESLRQR 308 >gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] Length = 269 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 110/250 (44%), Gaps = 14/250 (5%) Query: 41 RHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96 R+ + E N ++G+ V A+ + I L + L ++ + + V Sbjct: 15 RNEPKREYNQMVFGIRAVIEAIRSGKE-IESLFIQRGLGGELFYELKNLLNEYKIESQQV 73 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 P + ++++ K HQG+ +P+ ++ + L+++LD V D N+GA Sbjct: 74 PVEKLNRVTTK--NHQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGVTDVRNVGA 131 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A I+ + S + K+++GAL +IP R S+L ++ + S G Q Sbjct: 132 IARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKFLQSSGLQI 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + + A+++G E G+ + A +A + M G I++LNVS + Sbjct: 192 VCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIESLNVSVST 251 Query: 270 AVALYITQNH 279 V LY Sbjct: 252 GVILYEAIRQ 261 >gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] Length = 294 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 138/233 (59%), Gaps = 4/233 (1%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTV 96 + + + + FL+G H V AAL NP+R+ + +LLAT A ++ L H ++ V Sbjct: 48 RSADRSKSDADNFLWGRHPVLAALANPARRGMGRLLATAERAAEIE-QGQLAHGHKIEVV 106 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154 Q + +++ AVHQGLA + PL +L+ + ++++LD + DP N+GAI RSA Sbjct: 107 EVQALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNVGAIFRSA 166 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +AF GI+ R++P+ + LAK+A GA E +P+ R++NL+ AL+++ G++ +GL Sbjct: 167 LAFGARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVGLDG 226 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++ LE+ + L++G+EG G+R E +A + MPG ++LNVSN Sbjct: 227 TGEQTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279 >gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri] Length = 244 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 9/237 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E +++YG++ V +L NP+ KI +L + V + + Sbjct: 2 QEYIYIYGINPVVESLLNPAVKINKLYLLPQGKNNDYYLKLAKSRQLKVVFCSAVEMTTL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFS 158 V + + HQ L LE + +L ++ L+VLD ++DPHN GAILR+ F+ Sbjct: 62 V-QTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217 DG+I + +A +AK+++GA ++P R++NLT+A++ + GF S ++K Sbjct: 121 VDGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKA 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + + I LI+G EG G+ K + A ++ G + +LNVS A+A+ +Y Sbjct: 181 QNVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIY 237 >gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 289 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 15/253 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + R+ K ++++S+ ++ +++G H V AA+ N R+I +L T+NA Sbjct: 21 KTPMRNTSKRPDYSRRSKPAGTGDSGWIWGRHAVLAAVANKRREILELKVTRNAA----- 75 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141 +LP + V P+ ID + + AVHQG A L S +++ V + L+VLD + Sbjct: 76 -RDLPDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESVNGVIDPTHGALLVLDQI 134 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GA+LRSA AF +I R +P + KSA GA E + ++R++N+ D L + Sbjct: 135 TDPHNVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAAERVAHVRVTNIADTLLE 194 Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQETATSMAHL 254 G +GL+ +++ L + + L++G+E KGLR + E + + Sbjct: 195 FSKAGRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSEDKGLRQRVAECCDQLVRI 254 Query: 255 HMPGIIKALNVSN 267 M +++LNVSN Sbjct: 255 PMTDTVESLNVSN 267 >gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] Length = 326 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 26/294 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ L R ++ + + ++ TS ++ + G + V AL Sbjct: 25 TPKAEDRVYHKAYRAKKALERRKAADPRLAARRRVAKFTSDSDDFVI-GRNAVLEALKAH 83 Query: 65 -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + +L R L + +++I + HQG+ ++ AP Sbjct: 84 VPSSVLYILNRIEHDDRTREIIRLAGLEGLKILEADRLEMNRIA-RSVNHQGVIIKVAPY 142 Query: 122 LSPTLDAVRNS--------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +L + + L + LD V DP N+GA++RSA AF G Sbjct: 143 HYKSLQELVDRAEAKAQALGSASAKAKALAQPLFIALDGVTDPQNLGAVIRSAAAFGASG 202 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I +R S S +A K ++GA H+P R+ NLT A+ + GF +IGL + Sbjct: 203 VILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIDSLKERGFYSIGLDGGGTAQVG 262 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + D + ++LG+EGKG+ +E ++ + M ++++LN S AA +AL+ Sbjct: 263 YSGFETDPLIVVLGSEGKGISRLVREQCDAIVSIPMTSLVESLNASVAAGIALF 316 >gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 322 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALN 62 + K ++++ +H K+ + + KK Q+ ++R + + N + G + V A++ Sbjct: 35 TPKAEDRVYHA--AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD 92 Query: 63 NPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I LA R+ PV V ++ G E+ HQ + +E Sbjct: 93 AGIDIIRVFLAGNALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPE 151 Query: 121 LLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + L++ LD V DPHN+GA+LRS AF G++ ++R S S + Sbjct: 152 YDYCSAQDLLERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVN 211 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 A K ++GA +P R +NL AL ++ G +GL L + ++ Sbjct: 212 AAAWKVSAGAAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVV 271 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEGKGL +ET + + + +++LN + A +ALY + A+ Sbjct: 272 TGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAE 321 >gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09] Length = 246 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 +YG H++++ + + ++ + R++ + VK +D +V Sbjct: 7 IYGFHSITSQIRLDPLVVKEIFIDEARSDGRVNDLMKIIKANEVKFHLSTKDRLDGMVSG 66 Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + + L ++LD V DP N+GA R A A D Sbjct: 67 NK-HQGVVALVREAQNKYVTVEDIIEENYDKPLLFLILDGVVDPQNLGACFRVADAMGVD 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + +A + K A G E +P++ ++NL ++ + + G ++ K L Sbjct: 126 ALICPKDNAVGLNATVRKVACGGAESVPFVVVTNLARTIRYLKNSNVFVYGTDDNANKSL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IAL++G+EGKG+R T E + + M G +++LNVS A+ + LY Sbjct: 186 QKTNFKGSIALVMGSEGKGMRRLTNELCDDIFSIPMMGQVESLNVSVASGICLYEINRQR 245 Query: 281 A 281 + Sbjct: 246 S 246 >gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] Length = 246 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A K+F L ++ R H V V + +D+I Sbjct: 4 EELTIEGRNAVLEAYRAGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNFVAKERLDQI 63 Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A L + L++LD + DPHN+GAI+R+A Sbjct: 64 -SETGKHQGVIAYAAAYEYAEVEDLLKLAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NLT ++ + G + + Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 -LMYRLNLKGPIGLVIGNEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 239 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 13/239 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++YG + + AL N +K+ ++ A + + + + + +VG Sbjct: 3 YIYGRNAIIEALKN--KKVDKIYAAPGLKGSIGKIYAMAKEQKIVIVEADKKKLKDMVG- 59 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E HQG+ ++ ++ + + L++LD + DP+N GAI RSA AF Sbjct: 60 EVNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIMLDEIEDPYNFGAIARSAEAFGFH 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S + + KS++GA+E I ++NL+ + ++ G + + P+ Sbjct: 120 GIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIWVYGATMEG-DPI 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + I +++G EGKGL ++ + + M G I +LN S A + LY Sbjct: 179 CDQDLVGNICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQ 237 >gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] Length = 239 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 119/238 (50%), Gaps = 11/238 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDK 103 +YG ++V AL + + ++ + + + L P+K V I+K Sbjct: 2 EDIIYGKNSVLEALKSEI-PLNKIYIARGIHFDNKFNEILKLAKEKSIPIKYVERSFIEK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +V + QG+ + + + N +++VLDH+ DP+N+GAI R++ Sbjct: 61 MV--DGNSQGVLAILSSVPYKDWKELEKSLDNKSIIVVLDHIQDPYNLGAIARTSEFAGV 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ K S ++V K+++GAL +IP IR+SN+ + L+++ G+ +G +++ Sbjct: 119 SAIVIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELKGKGWFIVGADLNTENL 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + N +AL++G+EG+GL +E+ + + G +++LNVS A + LY + Sbjct: 179 YNKVEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIR 236 >gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella byssophila DSM 17132] gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella byssophila DSM 17132] Length = 263 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 10/262 (3%) Query: 29 DYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +K + +H ++P + F++GV++V L + LL + Sbjct: 2 ENRKGSGVKKFHKHINRPNKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLAR 61 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140 PV+ VP + ++++ K HQG + + L V S L+++LD Sbjct: 62 NRGIPVQKVPMEKLNRVTMK--NHQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDR 119 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N GAI RSA ++ R S + K++SGAL IP R ++L + ++ Sbjct: 120 ITDVRNFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVK 179 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + GFQ I + + + A+I+G+E G+ + + A + + G + Sbjct: 180 YLKNSGFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKV 239 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNVS AA V L+ K Sbjct: 240 ESLNVSVAAGVILFEAVRQKMK 261 >gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 15/262 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPH 89 MQ+F + R + N ++G+ V A+++ I L + L + H Sbjct: 1 MQNFQRHDRSEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKSLIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 + VP + +++I K HQG+ +P+ ++ + + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRITRK--NHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALYI--TQNHFAK 282 LNVS +A V LY Q K Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259 >gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex] Length = 250 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +L+G H+V AAL N R+ QLL T++AL ++ K +P +++++ + Sbjct: 18 FWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSPKILPRDELNRLL-PQ 76 Query: 109 AVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 VHQG+AL+ +PL L+ ++ L++LD + DP N+GAILRSA AF DG++ Sbjct: 77 TVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVLM 136 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 T+R+SP V+ KSASGALE IP + +N+ L+ + + GF GLS + PL Q Sbjct: 137 TERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQLP 196 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +AL+LGAEGKGLRP T + + L LN Sbjct: 197 CEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236 >gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] Length = 248 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 8/242 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 PEN +YG + V L + ++ N + + ++K+ Sbjct: 6 PEN-LVYGRNAVLELLREKPESVEKIYFQFNTSHPKLKEIIITARRQKIVTGKARLEKLS 64 Query: 106 --GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+A + + T++ + ++ LL+VL ++DPHNIGAI+R+A A + Sbjct: 65 LIAGTTKHQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVA 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG++ + +AV+ K+++GAL H+ ++ +L L+ +H G Q + +++ Sbjct: 125 ADGVVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAET 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A++LGAEG GL P+ E + + M G +++LNVS +A V LY Sbjct: 185 NYTDADFRKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMR 244 Query: 279 HF 280 Sbjct: 245 QR 246 >gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] Length = 249 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + P K++ L ++ R H + V + +++I + Sbjct: 11 IEGRNAVMEAFRSGKPIDKVYILDGCQDGPIRSIVREAKKHDTILNFVTKERLNQI-SET 69 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + A ++ + L++LD++ DPHN+GAI+R+A G Sbjct: 70 GRHQGVIAQAAAYEYAQVEDMLELAKQKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHG 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A +AK+++GAL + P +++NL ++++ G + D + Sbjct: 130 VIIPKHRAAGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDGDV-MY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++G EG+G+ +ET A + M G I +LN S AA V Y Sbjct: 189 RVNLKGPIGLVIGNEGEGVGRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQR 247 >gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] Length = 270 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 8/260 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLD 82 N++ KK+ S QK ++ + + G+ V A + R K A A + Sbjct: 9 NNQVIKKVASLKQK-KYRDEYNLFVVEGIRLVEEAAGSTWRPAMCFYTEKAAAAPRVQAT 67 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDH 140 + + V KI E QG+ +E L + + +L++VLD+ Sbjct: 68 LEILAAKGCRIFPVADNVYAKITDTEQ-PQGILCVMEKKRYTFDDLQS-SDRELIVVLDN 125 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G ++R+A A C G+I TK + S ++ G+L H+P I + Sbjct: 126 VQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLFHLPVITGVAEQEVAA 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + + + DS +A++ G EG G+ E A ++ + G Sbjct: 186 FLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSKVILEKADERLYIPLYGRA 245 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AAAV LY + Sbjct: 246 ESLNVAVAAAVILYEARRQR 265 >gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] Length = 278 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ E ++L+G+H V AL NP R+ +L+ T NA A+L+ DA + Sbjct: 30 KEQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKLE-DAIAAGGIEPEIH 88 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL L+ V L++LD V DPHN+GAIL Sbjct: 89 DPRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAIL 148 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I T+ ++ E+ LAK+ASGALE PY+R NL D ++ + G+ +G Sbjct: 149 RSAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLG 208 Query: 212 LSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L ++ +E ++ + +AL+LGAEG GLR KT+ET + + +LNVSN Sbjct: 209 LDGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267 >gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5] Length = 243 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ ++I +L K A +L D H V+ VP + ++++ Sbjct: 4 IIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + + L + + L+++ D V D N GAI RSA Sbjct: 62 -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + ++ + + GFQ + + S+K L Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240 >gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + + G + V AL + P ++F L + + R + V + +D Sbjct: 2 RDASTVIEGRNAVLEALRSGKPVDRVFILAKSYDGPIRTIVREAKKRDCILSFVDKKRLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 +I + HQG A T++ + L +LD++ DPHN+GAI+R+A Sbjct: 62 EI-SETGKHQGAIAYIAAYRYSTVEDILALARKRGEDPFLFLLDNIEDPHNLGAIIRTAN 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I K + +A +AK+++GA+ + P +++NL+ ++++ G + D Sbjct: 121 LAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEELKKEGLWFVCADMD 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + I L++G EG G+ ++ A + M G I +LN S AA V Y Sbjct: 181 GQV-MYDLNLTGPIGLVIGNEGSGVGDLVRKHCDLFAAIPMAGEIDSLNASVAAGVLAYE 239 Query: 276 TQNHF 280 Sbjct: 240 LVRQR 244 >gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] Length = 256 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 10/258 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + + + + Q + ++G +V L + I +L + Sbjct: 2 EKRKYTVRKPAPKQSQADMVFGTQSVLETLRSGKE-IERLFIQREFGLAEIEKLAKELGV 60 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 P + VP + ++++ K HQG+ +P+ L V + LL++LD V D Sbjct: 61 PYQRVPVEKLNRVTRK--NHQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDV 118 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N GAI R+A II + +A K++SGAL +P R NL + L + + Sbjct: 119 RNFGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRN 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q I + + K L +I+G+E G+ + + A S A + + G +++LN Sbjct: 179 SGLQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLN 238 Query: 265 VSNAAAVALYITQNHFAK 282 VS A++V LY K Sbjct: 239 VSVASSVVLYEAVRQRIK 256 >gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4] Length = 247 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 10/240 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + + + G H + AL + +LL ++ WD N+P T+ + Sbjct: 7 KKERIKTNTFMIEGFHLIEEALKVDG-VVEELLVVEDITLPKSWDVNVPM-----TLLKR 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 I+K + QG+ L + ++LD V DP NIG ++R+A A Sbjct: 61 GIEKELTDTEQPQGVFAICRQLNQ---NVELEGTAYLLLDGVQDPGNIGTMIRTADAAGF 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG+I + + + +SA G+ H+P + NL + +Q++H GF G S + + Sbjct: 118 DGVIMGEGTVDPYNPKVLRSAQGSHFHLPIVN-KNLVEVVQELHDNGFDVFGTSLQNGED 176 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + K ALI+G EG G++ T ++ + G ++LNV+ AA V +Y Q Sbjct: 177 YREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAAGVLMYWGQQQ 236 >gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] Length = 244 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + AL K+F + L R PV+ VP + ++++ K Sbjct: 7 IYGIRALIEALKAGKTIDKVFLQKGLQGVLFRELMPLLQEAQVPVQYVPVEKLNRLTKK- 65 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + + L +VLDH++D N GAI+R+A G Sbjct: 66 -NHQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S S +A K+++GA+ +P ++ NL DA+ + G + + + + + L Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 185 TEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243 >gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] Length = 260 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + ++ ++ ++ + G V A+ S I L+ T+ +LD Sbjct: 6 SKENTIYKEAKKLKER-KNRNKINKYVIEGFRLVDEAIK-ASLDIDYLILTQVGYEKLDN 63 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + V + + E QG+ + + LD + D V Sbjct: 64 YINKDKIEKQKVYCITDNLFKDLTSTE-NPQGIIAIVN-MENKNLDF--QGDFYLFCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A +GII +K + +S G+L ++P N ++ Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYYDDNEFSLIKS 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF+ I S +S K +E K L +G EG G+ + + A + MPG + Sbjct: 180 LKKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A ++ +Y Sbjct: 240 SLNVAIATSIIIYEKIRQ 257 >gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1] Length = 295 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 22/272 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKIFQLLA 73 ++N K+ +++ + LYG H V +AL + R ++ Sbjct: 9 KKNRPPAKRPPRLQRRTPAQPLQKAPPTAPAADAPELLYGRHAVLSALESG-RPCNRIWV 67 Query: 74 TK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + + + TV P+ +D++ + HQG+A++ A +L+ + Sbjct: 68 IPSLRYDPRFHQRLNEAKQQGAIIDTVTPERLDQLC-QRGRHQGIAIQVAAYNYWSLEDL 126 Query: 130 R------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 N +L+ D + DP N+GA++R+A A G+I +R + +A +AK+A+GA Sbjct: 127 LAKAATVNQPVLLAADGITDPQNLGAMIRTAEALGMQGVIIPQRRAVGITATVAKAAAGA 186 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 LE++P R+ NL AL+ + + G+ GLS PL + + ++G+EG+G+ + Sbjct: 187 LEYLPVARVINLNQALETLKAAGYWIYGLSEHGAVPLPKITFDRPTVFVVGSEGEGISLQ 246 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 TQ+ + + + G +LN S A +ALY Sbjct: 247 TQKHCDEIVAIPLAGRTNSLNASVAVGIALYE 278 >gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA1] gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL074PA1] gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA1] gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA2] gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA1] gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA1] gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA1] gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA2] gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL007PA1] gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL056PA1] gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL086PA1] gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA4] gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA1] gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA3] gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL067PA1] gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA1] gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA1] gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA1] gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA1] gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA1] gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL045PA1] gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA1] gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA2] gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL078PA1] gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL038PA1] gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA2] gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA1] gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA2] gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA2] gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL097PA1] gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA1] gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA2] gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA3] gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA2] gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL092PA1] gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA1] gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA2] gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL099PA1] Length = 318 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 21/291 (7%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSA 59 + + + + A+ R H+ YK Q ++ R ++ ++ G + V Sbjct: 24 RGRKALKGRGPTPKAEDRVYHKAYKAKQEKLARAAARKPANRQSTGAGPEWVIGRNPVLE 83 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL + + + A A L H + +D++ G + HQG+A Sbjct: 84 AL-HAGLPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVA 141 Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L T+ + + L++ LD V DP N+GAI+RSA AF G++ R Sbjct: 142 LRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRR 201 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KND 227 S S +A K+++GA IP +NL AL K + G+ +GL+ ++ + Sbjct: 202 SASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDG 261 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +++G+EG GL T+++ +A + + +++LN S AA++ALY Sbjct: 262 PLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAAR 312 >gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] Length = 262 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 7/235 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++L+G+H V AL NP R+ +L+ T NA +L+ DA + V P+ + Sbjct: 26 TVWLFGLHAVRDALLNPKREKLRLVVTLNAHNKLE-DAITTSGITPEVVDPRKFSVPIDP 84 Query: 108 EAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +VHQG ALE PL LD +++LD V DPHN+GAILRSA +I Sbjct: 85 GSVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIG 144 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 T+ +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ + Sbjct: 145 TRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAV 204 Query: 225 KN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY + Sbjct: 205 AGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYAS 259 >gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 ++ + ++ P + +D++V E HQG+ + A L+ + Sbjct: 2 QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNED 59 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R+ Sbjct: 60 PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL+ + ++ G G + K N I L++G+EGKG+ E + Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 179 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 HL M G + +LN S AA++ +Y Sbjct: 180 HLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 257 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99 +P +YG + V L + + ++ T + + P + Sbjct: 11 AQKPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLRIPCGKARME 70 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 + + G QG+ + TL+ V +S LL++L + DPHN+GAI+R+A Sbjct: 71 KLTLLSGTAKN-QGVCALLTSVTFYTLNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A + D +I + SA + K+++GAL H+ ++ ++ AL + GF + Sbjct: 130 EAVAADAVIMIEGKGAPISATVHKASAGALSHMRVCKVKSVVKALDLLRERGFSIVAADM 189 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ L++GAEG GL +T+ + + M G +++LNVS AA V LY Sbjct: 190 EAEHNHTDIDWKRPTVLVMGAEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLY 249 Query: 275 ITQNHF 280 Sbjct: 250 EAMRQR 255 >gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] Length = 212 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 ++ + ++ P + +D++V E HQG+ + A L+ + Sbjct: 2 QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R+ Sbjct: 60 PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL+ + ++ G G + K N I L++G+EGKG+ E + Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 179 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M G + +LN S AA++ +Y Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] Length = 318 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 13/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-- 69 S + H N + + R ++ + + G + V AL + P+ ++ Sbjct: 40 SARKGHKKNRVANAQARQAAARRPAPRRGGAKGTSEMVVGRNPVYEALRDGVPATTLYVQ 99 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 Q + + A + P +D++ K HQGL L+ P + + Sbjct: 100 QYIDNDERVRECLQLAGERGNINLMEAPRPELDRMT-KGLNHQGLVLQVPPYEYAHPEDL 158 Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 159 TAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + +E E + + +++G+EGKGL Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLSGPVVIVIGSEGKGLG 278 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 279 RLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRRA 318 >gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA2] gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA2] gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA1] gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA2] gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA1] gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA3] gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA2] gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA2] gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA2] gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA3] gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA2] gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA3] gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA1] gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA3] gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA2] gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL020PA1] gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266] Length = 318 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 21/291 (7%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSA 59 + + + + A+ R H+ YK Q ++ R ++ ++ G + V Sbjct: 24 RGRKALKGRGPTPKAEDRVYHKAYKAKQEKLARAAARKPANRQSTGAGPEWVIGRNPVLE 83 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL + + + A A L H + +D++ G + HQG+A Sbjct: 84 AL-HAGLPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVA 141 Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L T+ + + L++ LD V DP N+GAI+RSA AF G++ R Sbjct: 142 LRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRR 201 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KND 227 S S +A K+++GA IP +NL AL K + G+ +GL+ ++ + Sbjct: 202 SASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDG 261 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +++G+EG GL T+++ +A + + +++LN S AA++ALY Sbjct: 262 PLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAAR 312 >gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] Length = 318 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 114/258 (44%), Gaps = 15/258 (5%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFP 92 + R + ++ G + V L P+ ++ ++ T +A R+ + Sbjct: 63 RRTHRKSEDGGPEYVVGRNPVVECLRAEVPATALY-VMTTIDADERVKEAVHTAGDRGIS 121 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 + V +D++ +HQGLAL+ + + ++ LL+ LD++ DP Sbjct: 122 ILEVGKPELDRM-SPNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDPR 180 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RS AF G++ +R S +AV ++++GA +P NL L Sbjct: 181 NLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKK 240 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q +GL + L+ +++G+EGKGL +E S+ + + +++LN Sbjct: 241 GAQIVGLDAGGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNA 300 Query: 266 SNAAAVAL--YITQNHFA 281 S AA V L + Q Sbjct: 301 SVAAGVVLSEFARQRRIG 318 >gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396] gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396] Length = 238 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 12/236 (5%) Query: 55 HTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVH 111 H V A L KI +LL ++ RL A L P V +DK + H Sbjct: 2 HAVRALLQKHPGKIDRLLLSEQRHDHRLQEIAQLAQERRVPFSQVGKSALDKAA--DGAH 59 Query: 112 QGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ L+ + LL+VLD V DPHN+GA LRSA A +I Sbjct: 60 QGVVAYLKADRMSNETDLEELLEKLEEPALLLVLDGVTDPHNLGACLRSANAAGVHAVIV 119 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K S +A K A GA E P IR++NL L+ + ++G +G + ++++ L Q Sbjct: 120 PKDKSAPLNAAARKVACGAAEVTPLIRVTNLARTLKHIQTYGVWLVGAAGEAEQSLYQAD 179 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++GAE KG+R T+E S+ ++ M G + +LNVS A V L+ Sbjct: 180 LKGSVAIVMGAEDKGMRRLTRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQR 235 >gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] Length = 252 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 117/268 (43%), Gaps = 19/268 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S+K+ + +KK+ + + + + G H V A+ N + Sbjct: 2 KQIDSVKNPQV-------KAWKKLHNKKDRDKQ----GLFMVEGFHLVEEAIKN-KDCVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +L+ ++ W+ + + V I K++ QG+ + + + Sbjct: 50 ELIIRESIEVPAQWNID---GIEITVVNEAII-KLLSDTETPQGIIAVC--FQTKHAEII 103 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q +++LD V DP N+G I+R+A A + II + + + +S GA+ H+P Sbjct: 104 HTAQKVLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGAIFHLPI 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ +L + + + G S + K +++ AL++G EG G+ K E Sbjct: 164 VK-GDLLEMISLLKEREIAVYGTSLQNGKVYTCVKPSNEFALVVGNEGNGVSEKVLEQTD 222 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ A+ + LY + Sbjct: 223 QNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 248 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 N +YG+H V A L + ++ + + +K V Q +D + Sbjct: 2 NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLD-M 60 Query: 105 VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K A HQG+ P L A + LL+VLD V DPHN+GA LR A A Sbjct: 61 QVKGATHQGIIARVQTNRRQFQEQDLPALLAQHTAPLLLVLDGVTDPHNLGACLRCADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + II + S +A + K ASGA E +P I+++NL L+ + +G + ++ Sbjct: 121 GVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIEAD 180 Query: 218 KPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q IAL++GAEG G+R T++ + + M G + +LNVS A V L+ Sbjct: 181 SHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFE 240 Query: 276 TQNHF 280 Sbjct: 241 VVRQR 245 >gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 244 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + AL K+F + L R PV+ VP + ++++ K Sbjct: 7 IYGIRALIEALKAGKTIDKVFLQKGLQGGLFRELMPLLQAAQVPVQYVPVEKLNRLTKK- 65 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + + L +VLDH++D N GAI+R+A G Sbjct: 66 -NHQGVVATLSPVDYHNFEDLVISVTESGVTPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S S +A K+++GA+ +P ++ NL DA+ + G + + + + + L Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 185 AEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243 >gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] Length = 249 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 13/246 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101 + E L G + V A + I +L K+ + V + Sbjct: 2 REEGYTLIGRNPVLEAFR-AGKTIDRLFIQDGLKDGPILSILREAKKQDLVIDFVKKSRL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ E HQG+ + L+ + + +LD + DPHN+GA++R+A Sbjct: 61 DEMSSGE-THQGVIAYLSAYEYAPLEELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRTA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G+I KR + +A +A++++GAL + +++NL ++++ G + Sbjct: 120 NLAGAHGVIIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCGDM 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + I L+LG EG+G+ +ET A + M G + +LN S A V Y Sbjct: 180 RGE-SMYKLNLTGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAY 238 Query: 275 ITQNHF 280 Sbjct: 239 EIVRQR 244 >gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] Length = 298 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 15/262 (5%) Query: 21 AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77 A LR +H K+ ++ ++ + + E + G + V L P+ ++ L T+ A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97 Query: 78 LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129 RL + V +D++ +HQG+AL+ P D + Sbjct: 98 DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP Sbjct: 157 QPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276 Query: 250 SMAHLHMPGIIKALNVSNAAAV 271 + + M ++LN S AA V Sbjct: 277 EVVFIPMAAQAESLNASVAAGV 298 >gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha proteobacterium HOT2C01] Length = 257 Score = 224 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 8/253 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--P 90 M ++K Q + ++YG H V AL N +R +++ T A +L + L + Sbjct: 1 MSKRSKKLPKKRQNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINV 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145 +K ID ++ + HQG+ + L +P L ++ +LD ++DP Sbjct: 61 ISIKK-TRDEIDLLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQ 119 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA+AF+ DGII T S +E++ LAK+AS AL+ +P+I+I N++ ++ + Sbjct: 120 NVGAIFRSALAFNIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDS 179 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ GL +++ + + KI ILG+E KG+R T + M +++LNV Sbjct: 180 GYWIYGLDMKAERSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNV 239 Query: 266 SNAAAVALYITQN 278 SN AA+ ++ N Sbjct: 240 SNTAAIIMFYVSN 252 >gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003] gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus SB 1003] Length = 264 Score = 224 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 10/229 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105 L+L+G+H V AL NP+R +L+ TKNA +L +A + V P+ D V Sbjct: 21 TLWLFGLHAVRDALMNPARVKLRLVLTKNAADKLA-EAIAAGGLAPEIVDPRKFDAHVPL 79 Query: 106 GKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G + VHQG ALE PL L V L+++LD V DPHN+GAILRSA F Sbjct: 80 GPDQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARA 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R+S E+ LAK+ASGALE PY+R++NL++A+ + G+ IGL+ +++ L Sbjct: 140 VVAPARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLA 199 Query: 222 Q---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + E+ +A++LGAEG GLR KT+ T + + G +LNVSN Sbjct: 200 EGLAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248 >gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 280 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 13/261 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR 80 +R +H K+ ++ ++ + L G + V L P+ ++ L T+ A R Sbjct: 1 MRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-ADER 58 Query: 81 LDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS 132 L + V +D++ +HQG+AL+ P D + + Sbjct: 59 LTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQPP 117 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 118 ALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARA 177 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 178 TNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVV 237 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 + M ++LN S AA V L Sbjct: 238 SIPMAAQAESLNASVAAGVVL 258 >gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] Length = 348 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 136/298 (45%), Gaps = 27/298 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ R+ R ++ + + ++ TS ++L + G + V AL Sbjct: 35 KGPTPKAEDRVYHKAYKAKKAAERHTRADPRLAARRRVAKFTSDSDDLVI-GRNAVLEAL 93 Query: 62 N--NPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P+ ++ + + R + +D+I K HQG+ ++ Sbjct: 94 RVSVPASTLYVAARLEHDDRTREIMRLAGIQGLHILEADRLEMDRIA-KGGHHQGVIMKA 152 Query: 119 APLLSPTLDAVRN---------------------SQLLMVLDHVNDPHNIGAILRSAVAF 157 P +L+ + + L + LD V DP N+GA++RSA AF Sbjct: 153 QPFQYSSLNELADRAERKARAMQEASNESARINARPLFIALDGVTDPQNLGAVIRSAAAF 212 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +GL Sbjct: 213 GANGVILPERRSASVTAAAWKVSAGAAAHMPIARVVNLTKAIEGLKERGYYAVGLDGSGS 272 Query: 218 KPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + Q + D + ++LG+EGKGL T+E +A + M ++++LN S AA + LY Sbjct: 273 KEVGQTGFETDPLIVVLGSEGKGLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330 >gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] Length = 248 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 7/244 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + +L ++G + V AL L+A + R + V+ V Q I+ Sbjct: 2 EKENHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQRVSRQKIED 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + QG+ +P+ + + + ++++LDH+ DP N+G+ILR+A F Sbjct: 62 LANTKKT-QGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K S + V+ K+++GA+ H+P ++ +L + ++K G + + + Sbjct: 121 VSGVIIPKERSSPINEVVIKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVVAVE-KGGR 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + IAL++G+EGKG+ E A +A + M G I +LNVSNA ++AL+ Sbjct: 180 NIAEIDFPYPIALVVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFK 239 Query: 279 HFAK 282 K Sbjct: 240 RRIK 243 >gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] Length = 264 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 5/258 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K S K +H + + G+H V AL ++ + + L Sbjct: 10 QNARAKGWASLLDK-KHRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPLELQQL 68 Query: 86 NLPHPFPVKTVPPQ--TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 FP V + K G ++ A+ P++ T R L++VLD V D Sbjct: 69 PALIAFPELLVSASTVVMAKCTGTDSPPPVFAVVAKPVVEETA-LFREQSLVVVLDGVRD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RSA A D ++ + + +S G+L H+P I ++L + L K Sbjct: 128 PGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLPVIE-ADLLELLPKAQ 186 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + S S L++G+E GL P+ E A + + G ++L Sbjct: 187 ERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPEVLELADQSVIIPIRGRAESL 246 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ AA V LY Sbjct: 247 NVAMAATVILYEALRQRG 264 >gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] Length = 276 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 16/270 (5%) Query: 24 RRNHRDYK---KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 RRN R + K + K ++ QP+ + ++G+ +V L + +I +L K Sbjct: 4 RRNPRVNRPNYKPRPGGSKPQYQPQPDEM-VFGIQSVIETLKSDQ-QIDKLYMEKGLSNP 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 + ++ VP + +D+ K HQG+ A + L V Sbjct: 62 DIQNLAFQKRVTIQRVPVERLDRFTRK--NHQGVVCLIAQVQYVKLSNVIADVFERGEVP 119 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + D N GAI R+A I+ R + + ++ K++SGAL HI R Sbjct: 120 FFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGALNHISVCREP 179 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSM 251 +LT+ ++ + G + + S + L + +A+I+G+E G+ P+ + Sbjct: 180 DLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGISPELLRMVDTH 239 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G + +LNVS A V LY + Sbjct: 240 VKIPLLGAVGSLNVSVATGVILYEAVRQRS 269 >gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] Length = 289 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 93/262 (35%), Positives = 132/262 (50%), Gaps = 18/262 (6%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 SH R+ R + + +S + + +YG H V AAL+N R + + T A Sbjct: 8 SHAGSDRQTERSF----DGSTRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGA 63 Query: 78 -------LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129 L+ L P P + V +D + AVHQGL L+ PL P L + Sbjct: 64 GDAMAVFLSELPEPRRRSLPAP-QPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLI 122 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R +L+VLD V DPHN+GA+LRSA AF ++ R+ P + VLAK ASGAL Sbjct: 123 VAWEGRTDIVLVVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGAL 182 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + +P +R+ NL AL+ + GF GL+ D L + + A++LGAEG GLR T Sbjct: 183 DVVPLVRVVNLARALRDLQENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLT 242 Query: 245 QETATSMAHLHMPGIIKALNVS 266 +ET ++A L I +LNVS Sbjct: 243 RETCDALARLPTCPPIGSLNVS 264 >gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] Length = 212 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 9/206 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 ++ + ++ P + +D++V E HQG+ + A L+ + Sbjct: 2 QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+G+I+R+A A G+I KR + +A +AK+++GA+E+IP R+ Sbjct: 60 PFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARV 119 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL+ + ++ G G + K I L++G+EGKG+ E + Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLI 179 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M G + +LN S AA++ +Y Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] Length = 252 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 +++YG H AAL N +R+ +++L T+N + +KTV I+ Sbjct: 6 IWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNINLKTVNLNYINS 65 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRSAVAFSC 159 ++ + HQG+AL+ + + T++ + NS + ++LD + D HN+GAI+RSAV F+ Sbjct: 66 VLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAVCFNV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II SPSE+ ++K++SGA++ IP + NL ++ + G+ G + + Sbjct: 126 DAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTKEGEL 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + ++K +I G+E KG+R T+E + + I +LNVSNAAAVALY Sbjct: 186 LHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240 >gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] Length = 266 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 6/236 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ +++G H AALNNP R I + T++ L + L K V + + + Sbjct: 26 TDKKSYYIFGTHASLAALNNPLRVIRYIYCTESCFLSL---SKLIQKHDYKIVTTKFLHQ 82 Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++G + VHQG+A+ T PL +D + + +LD + D +N+GAI+RSA AF+ Sbjct: 83 LLGSQIVHQGIAVNTIPLTINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNIS 142 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II + S E+ +AK A GALE I +++ NL + + + +GF IGL ++ L Sbjct: 143 TIILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQL 202 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + K+A +LG+E KGLR T++ + + M ++LNV+ AA + Y + Sbjct: 203 TEQTFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYES 258 >gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] Length = 312 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97 ++ + G + V AL P+ ++ L +A R+ + + VP Sbjct: 58 KKAEEAPEIIAGRNPVVEALRADVPATALYVAL-NIDADDRVTEAVRMAADKGVSILEVP 116 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +D+ AVHQGL L+ P T D + LL+ LD V DP N+GAI Sbjct: 117 RTELDRKTD-GAVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAI 175 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF G++ R S +AV ++++GA +P +NLT L++ + G Sbjct: 176 IRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIA 235 Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL +D ++ I D + +++G+EG+GL +ET + M +++LN S A Sbjct: 236 GLDADGSTDIDTMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAG 295 Query: 270 AVAL 273 AV L Sbjct: 296 AVLL 299 >gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] Length = 248 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 EN ++G+ V A+ + ++L ++ L++ ++ PV+ VP + +D Sbjct: 2 KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 61 RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ + S S +A K+++GAL +P + ++ A++ + G + S Sbjct: 119 CAGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] Length = 236 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL NP I ++ K ++ +L + + Sbjct: 4 IIGLNPVTEALQNPETNIEKIEIFKGLKDDKIGRIKSLASKRNIKIHFTDKRA------- 56 Query: 108 EAVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ + L+ V +++VLD V DP N GAI+RSA F Sbjct: 57 -ENSQGVVAFISQYDYYVDLGAFLEKVAKDEKSIVLVLDGVQDPRNFGAIVRSAEIFGVK 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII +R S + + K+++GA+EH+ I+++N+++A+QK+ + G KK Sbjct: 116 GIIIPERNSVKINETVVKTSTGAIEHVDIIKVTNISEAIQKLKKLDYWVYGAEGSGKKCY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E ++ AL++G EG G+R K +E + ++ M G I +LNVS A + L Sbjct: 176 YDEKYPNRTALVMGGEGSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILL 228 >gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] Length = 250 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L ++G + V AL L+A + R + V+ V Q I+++ + Sbjct: 9 LVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQKVSRQKIEELANTK 68 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 QG+ +P+ + + + ++++LDH+ DP N+G+ILR+A F G+I Sbjct: 69 KT-QGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + V+ K+++GA+ H+P ++ +L + ++K G + + + + + Sbjct: 128 IPKERSSPINEVVVKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVVAIE-KGGRNIAEI 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 IALI+G+EGKG+ E A +A + M G I +LNVSNA ++AL+ K Sbjct: 187 DFPYPIALIVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIK 245 >gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 222 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 ++ + ++ P + +D++V E HQG+ + A L+ + Sbjct: 12 QIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNED 69 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+G+I+R+A A G+I KR + +A +AK+++GA+E+IP R+ Sbjct: 70 PFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARV 129 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL+ + ++ G G + K N I L++G+EGKG+ E + Sbjct: 130 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 189 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M G + +LN S AA++ +Y Sbjct: 190 TLPMVGKVTSLNASVAASLLMYEVYR 215 >gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] Length = 308 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 12/274 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + + +R + + Q+ + R E ++ G AL I + L + Sbjct: 31 RGARFTAQQRMPQASRTQQTAAPQRRDVHAAEGNYIEGRRAAFEALRTG-FPIKRALIAQ 89 Query: 76 NALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129 L VK+VP +D I HQG+ LE L + Sbjct: 90 GVENEPAIRDLLGGLGEAGVSVKSVPRTQLDAISS-HGAHQGIVLEVGKFPYADLSDIIA 148 Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++VLDHV D N GAI+RSA G++ + S + K+++GA+ Sbjct: 149 AAPAGSPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVM 208 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H+P ++ N+ AL+ + S GF G + ++ ++AL++G+EG G+ Sbjct: 209 HLPIAQVPNIARALEDLKSAGFWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVL 268 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +T L G ++LNV+ AA + Sbjct: 269 DTCDFTTKLPQRGETESLNVAQAATALCFEWMRR 302 >gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 212 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 9/206 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132 ++ + ++ P + +D++V E HQG+ + A L+ + Sbjct: 2 QIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R+ Sbjct: 60 PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +NL+ + ++ G G + K I L++G+EGKG+ E + Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLI 179 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M G + +LN S AA++ +Y Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] Length = 251 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 22/249 (8%) Query: 51 LYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G H + L ++ + + L+ A L VK + +D++V + Sbjct: 5 IIGFHAIEEGLKGAASGSVLYLVRGMGSNTQALERQALLTGKVLVKKIAKVEMDRMVD-Q 63 Query: 109 AVHQGLALE----------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 A H+G L+ + D +S L++VLD + DP N+GAILR Sbjct: 64 ADHRGAVLDLMVPGKGSGARIPAMSVKEYCATLKDD--DSALVLVLDEITDPQNLGAILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA FS +I +R S + + K +SGA +++P ++N+ ++ + S GF G Sbjct: 122 SADQFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLATVTNMNREIEYLKSQGFWVYGA 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + + + + + L++G EGKG+ TQ+ M + M G I +LNVS A + Sbjct: 182 SMSGQA-VYKTVFPKRTVLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGIL 240 Query: 273 LYITQNHFA 281 LY + A Sbjct: 241 LYEVRRQQA 249 >gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] Length = 270 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALAR----------LDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + I ++ ++ A + L D + V P + + + + Sbjct: 47 IEYQIECINLVIFSQQAKEKYQEFFEECKYLLQDGKIKRVIEV----PDKLFEYITTTST 102 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E + ++ ++N + +++ D++ DP N+G ++R A AF D ++TTK Sbjct: 103 PQGILAECI-FVDKDINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G+L H+ +R + ++ + F + + + + + + Sbjct: 162 IYNPKTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++G E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 222 IVIGNESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270 >gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 256 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 26/278 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ +K+E I +K K R R + F+ G ++V AL Sbjct: 2 VITSEKNEFIKDVKKLADKKYRYEKRLF-------------------FVEGKNSVFEALK 42 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + +I LL ++ + + V + KI A Q + Sbjct: 43 SG-FEIVHLLVAEDFNIDFQIEKE-----KIVFVDEKVFKKISDTVA-PQMIMAVVKMPK 95 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 D V+ ++LD V DP N+G I+RSA AF+ DG+ + + +S G Sbjct: 96 WEVNDIVKEGGFYVILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMG 155 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ H+P + + + G + + S ++K + + ALI G E +G+ Sbjct: 156 SIFHLPVVNDVEPSRLFHVLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNR 215 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E S + M G+ ++LNVS AA++ LY ++ Sbjct: 216 LLDEFIDSSFKIPMDGMAESLNVSVAASICLYESERQR 253 >gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] Length = 335 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 12/245 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G ++V AL LA + + R +P+ V +D++ Sbjct: 91 EIVSGRNSVVEALRAGIPVSTVYLAARLEADDRTREIVSTAAEAGYPLLEVSRTELDRLT 150 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 +VHQG+A++ P + + + L++ LD V DP N+GA+LRSA AF Sbjct: 151 D-GSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTDPRNLGAVLRSAGAFG 209 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R + +A K ++GA +P R++NL LQ G +GL + Sbjct: 210 AHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYKEAGVFVVGLDGGGDQ 269 Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + L++G+EGKGL +E ++A + + +++LN AA +ALY Sbjct: 270 SVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEVA 329 Query: 278 NHFAK 282 + Sbjct: 330 RRRGE 334 >gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 198 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 + P + +D++V E HQG+ + A L+ + ++LD + DPHN Sbjct: 2 QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 60 LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + K I L++G+EGKG+ E + L M G + +LN S Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179 Query: 267 NAAAVALYITQN 278 AA++ +Y Sbjct: 180 VAASLLMYEVYR 191 >gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] Length = 247 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 7/240 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + E L ++G + V AL + L+A + + V+ VP Q + Sbjct: 2 KEEKGEKLVIWGRNPVIEALRSGKSLEKILVAHDSHPPKDLLKLAEERKVKVQKVPRQKV 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +++ G + QG+ +P+ D ++ +L+VLDH+ DP N+G+I+R+A Sbjct: 62 EELAGTKKT-QGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNVGSIMRTAEI 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S + V+ K+++GA+ ++P ++ +L + L+K G + + Sbjct: 121 LGVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSLRNTLEKFKKKGGWVVAVE-KG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + + +AL++G+EGKG+ E A +A + M G I + NVSNA A+AL+ Sbjct: 180 GKNIHEIDFPFPLALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEV 239 >gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] Length = 238 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + + L K+ + + A L P + + ++ E Sbjct: 3 VYGRNILKEILETN-TKVRMIYFSDTNSAELTELIEEVKKRRLPFTIANKKVLQRLSNTE 61 Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ ++ + L++LD + DPHN GAI+R+AVA D II K Sbjct: 62 K-HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + + K + G + I I+ N+ ++ + G G ++ K + Sbjct: 121 NNSVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKV-YYKTDLR 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IA++LG EG G+RP +E ++ + M +++LNVS +A + LY Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232 >gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 278 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 112/268 (41%), Gaps = 17/268 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +K++ + + G S P ++ + T++ L + +A Sbjct: 6 SNSQVKQVSAIAKKAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62 Query: 86 -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNS 132 L +TV + + + + QG+ D + + Sbjct: 63 DRLLAGCRYETVTGEVMKAMADTQ-TPQGILALCRQFSYELSDILGERKEGDEHTQEKAP 121 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++L+ + DP N+G ILR+ G+I + + + +S G++ +P++ + Sbjct: 122 AQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYV 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L DA++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 182 EDLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYI 241 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN + AA++ +Y T Sbjct: 242 KIPMLGKVESLNAAVAASILMYETARQR 269 >gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905] gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905] Length = 254 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 20/267 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S +++ + +KK+ + + + + G H V AL N ++ Sbjct: 2 KRIESTQNALV-------KYWKKLATTR---KERERSGEFIVEGFHLVEEALKN-KEQVL 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128 Q++ + + W + V +V + + QG+ P L + A Sbjct: 51 QIIVREGVDLPMLWPIDGIAIIEVTSVVAKEFAE----TETSQGVFAICKQPALEEEVKA 106 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + ++++D V DP NIG ++R+A A D +I K + + ++A G+ HIP Sbjct: 107 --SWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R LT+ + + + G G + D P A+I+G EG G++P+ Sbjct: 165 VVR-EELTECVDFLQAQGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAM 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A + LY Sbjct: 224 TDQNIIIPIFGQAESLNVAVATGIVLY 250 >gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium phytofermentans ISDg] Length = 248 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L + G + V A ++F L ++ + + + V + +D++ Sbjct: 4 EELTMVGRNAVLEAFRAGKTIDRLFILDGCQDGPIKSILREAKKYDTIITFVKKERLDQM 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +E HQG+ A +D + + L++LD + DPHN+GA+LR+A Sbjct: 64 -SEEGKHQGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK ++GA+ + P +++NL ++++ G + + Sbjct: 123 GAHGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCADMSGE 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-- 275 Q I L++G+EG+G+ +E + + M G I +LN S A V Y Sbjct: 183 VMYRQ-NLTGPIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIV 241 Query: 276 TQNHFAK 282 Q FAK Sbjct: 242 RQRSFAK 248 >gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301] Length = 246 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ ++I +L K A +L D + H + VP + ++++ Sbjct: 5 LIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +TA + L + + L+++ D V D N GAI RSA Sbjct: 63 -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + L+ + + GFQ + + S+K L Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQR 241 >gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] Length = 249 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 13/245 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIV 105 + YGVH+V + L ++ L K RL L V+ ++K+ Sbjct: 5 EYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKLEKLA 64 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSC 159 G + HQG+ L L+++ ++ LL+ LDH+ DPHN+GA +R+A A Sbjct: 65 G-QPFHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTAAAMGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218 + +I + S + + K A+G + + +I+++NL L ++ + + +G D K Sbjct: 124 EAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTMLDEKA 183 Query: 219 -PLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P++ + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 184 LPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMALYEA 243 Query: 277 QNHFA 281 Sbjct: 244 CRQRN 248 >gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] Length = 278 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%) Query: 43 TSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100 + + L L +G + L + ++ + A + L ++ V Sbjct: 29 RDESDGLLLCWGRNPSLEQLERSGESVERVWLARGVEAEFEAQVVRLAGRTALERVDRLA 88 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAV 155 +D++ G AVHQG+AL +LD + L+++LD DPHN+G+++R+A Sbjct: 89 LDQMTG-GAVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTAE 147 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + + K+++GA P I + N+ AL + GF +GL+ + Sbjct: 148 AAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAGE 207 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S +PL + + + L +GAEG GL T+++ +A + M G ++LN AAA+ Y Sbjct: 208 SSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYE 267 Query: 276 TQNHF 280 F Sbjct: 268 WARRF 272 >gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10] gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens MLS10] Length = 251 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 32/279 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I+ ++ +I + K H K R + F+ G H + A Sbjct: 1 MDVIASVQNPRIKAWKKLHTKKGR-------------------DKSGLFFIEGDHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ET 118 + + I +L+ +N W+ PV V ++++ E QG A E Sbjct: 42 IRSAI-TIKELILEENQSLPEAWED---PEVPVVWVTQPVLNELCETE-TPQGFAAVCEK 96 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 PL++ LD R + +D V DP N+GA++R+A A G++ + + + Sbjct: 97 PPLVNLPLDDGR----FLFIDGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIR 152 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G+L HIP ++ +L +A++ G S D ALI+G EG Sbjct: 153 STQGSLFHIPVQKM-DLEEAVEICKEANVPVFGTSLQGST-FNALEPQDTFALIMGNEGS 210 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G+R + E ++ + G ++LNV+ A + LY + Sbjct: 211 GVRARLLEMTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249 >gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila SL1] Length = 271 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVG 106 +YG H A + + ARL+ + V+ V + +D++ Sbjct: 25 LVYGQHAAREAAAYDPAGVEAVWVEHGRRDARLERLLDKLGRQGVTVERVHRRVLDQMA- 83 Query: 107 KEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ L + L LL+VLD V DPHN+GA +RSA A Sbjct: 84 EGGNHQGIVLRYSGTPARGEGELADLVDAEPEPLLLVLDRVQDPHNLGACMRSAAAAGAH 143 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + S + K+A+GA++ IP+ +++NL LQ++ G +G + +++K Sbjct: 144 GVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVTNLARTLQQLRDAGVHVVGAAGEAEKSC 203 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+LG EG+GLR T+E + MPG +++LNVS AA V L+ Sbjct: 204 YEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMESLNVSVAAGVLLFEAVRQR 263 >gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] Length = 234 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V AL+ KI T R + + + Sbjct: 4 IIGLNAVREALDGSKNIEKIEIYKGTNKDRIRDILSKASKKNIKIFYTDKR--------Q 55 Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+A + L+ V + +++VLD + DP N GAI+RSA F DG Sbjct: 56 ENSQGIAALVSEYDYYLELNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDG 115 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R S S + + KS++GA+EH+ I+++N++D++ K+ +G+ G +D + Sbjct: 116 IIIQDRNSVSVTETVVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYY 175 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E +K+ L+LG+EGKG+R K +E + ++ M G I +LNVS A + L Sbjct: 176 NEPFPEKLCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILL 227 >gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] Length = 198 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 + P + +D++V E HQG+ + A L+ + ++LD + DPHN Sbjct: 2 QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 60 LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + K I L++G+EGKG+ E + L M G + +LN S Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179 Query: 267 NAAAVALYITQN 278 AA++ +Y Sbjct: 180 VAASLLMYEVYR 191 >gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] Length = 244 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 E L ++G+ V AL ++L K+ L R +A H + VPP+ Sbjct: 2 KEELHIFGIRAVLEALEAGKTP-EKILVRKDLTGNLFRQLQEAAKKHNMSLTVVPPERFR 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + + HQG+ +P+ A+ + L ++LD V+D N+GAI+R+A Sbjct: 61 RF--ESRNHQGVVAVLSPITYREHTALIDETLARDKAPLFLLLDGVSDVRNLGAIIRTAE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+ S SA K+++GA ++P R +L D + + + G + + + Sbjct: 119 CAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + +ALI+G+E +G+ P + A L M G I++LNVS A V L+ Sbjct: 179 AESTLYEADLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFE 238 Query: 276 TQNHFA 281 Q A Sbjct: 239 AQRQRA 244 >gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 249 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A + L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG EG GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 234 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 9/235 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG V AL N L + + ++ ++ A + ++ +DK+ Sbjct: 3 YIYGRGPVIEALKNNKVDKIYLASHEGSIIKIKAMAK-EKKVLISSLSKDRLDKMA-PGK 60 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + L++LD + DPHN+GAI RSA+ F+ DGII Sbjct: 61 NHQGVVALVSGYEYKDFQELLDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + K++ GA++++ +++NL+ ++K+ GF + ++ Sbjct: 121 IPKHREALVNDTVYKTSQGAVDNVNICQVTNLSQTIEKLKKAGFWIYAALLEGDN-IKDV 179 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+A+I+G EGKG+ + + + +LN S AA + +Y Sbjct: 180 DFSGKVAIIIGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR 234 >gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] Length = 323 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 18/275 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNN--PSRKIF 69 + K + +R M K R + + G + V AL + P+ ++ Sbjct: 38 KAEDRKKHKANRISNAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPASTLY 97 Query: 70 --QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 Q + + A + P +D++ HQGL L+ P + Sbjct: 98 VQQFIDNDERVREALQLAAERGNINLMEAPRPELDRLT-NGLNHQGLVLQVPPYEYAHPE 156 Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L++ LD V DP N+GAI+RS AF G++ +R + +A K++ Sbjct: 157 DLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239 +G P R++NLT ALQ G +GL+++ + + +++G+EGKG Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDLAELAGPVVIVVGSEGKG 276 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L E + + MPG ++LN AA V LY Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311 >gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] Length = 248 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 EN ++G+ V A+ + ++L ++ L++ ++ PV+ VP + +D Sbjct: 2 KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 61 RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ + S S +A K+++GAL +P + ++ ++ + G + S Sbjct: 119 CAGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces flavogriseus ATCC 33331] Length = 318 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G + V AL + P+ ++ Q + + A + P +D+ Sbjct: 74 SEMVVGRNPVFEALRDGVPATTLYVQQYIDNDERVREALQLAGERGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P + + L++ LD V DP N+GAI+RS A Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPEDLTSAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHFA 281 A Sbjct: 313 VARRRA 318 >gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] Length = 231 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 62 NNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + + + ++ R D A + + + E HQG+ Sbjct: 2 RHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAHTER-HQGVVARV 60 Query: 119 APL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 L L+ LD + LL+VLD V DPHN+GA LR A A II + + + Sbjct: 61 EDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLN 120 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 A AK ASGA + +PYI ++NL AL+++ G IG S D+ + + +AL++ Sbjct: 121 ATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKLDGPVALVM 180 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 181 GAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 228 >gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] Length = 338 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 12/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPP 98 +P + G V+ AL + L + + L PV+ V Sbjct: 91 KKPATDLIEGRRAVAEALTVGI-PLKNALVQAASGQKDQEIEALARQLEQEGIPVERVAR 149 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRS 153 +D + HQG+ + T P L + + L++VLDHV D N GAI+RS Sbjct: 150 PVLDSLSS-HGAHQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEGNFGAIVRS 208 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G++ + K+++GA+ H+P ++SNL AL+++ + GF T G + Sbjct: 209 AEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAAGFWTCGST 268 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + + ++AL++G+EG G+ E L G +++LNV+ A V Sbjct: 269 EHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMC 328 Query: 274 YITQNH 279 Y Sbjct: 329 YEWLRR 334 >gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 268 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 122/283 (43%), Gaps = 20/283 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ K+ E++ S+K++ +++KK+Q+ + Q L G H V+ A Sbjct: 3 MDFEVKELVEELTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEA 51 Query: 61 LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L R + +L+ TK LA D A V +V P + + + QG+ + A Sbjct: 52 LQAD-RGLHELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVA 105 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L A S + LD V DP N+G ++R+A A G++ + S + +S Sbjct: 106 DLPDLHQVATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 165 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238 G+ H+ +L + + G+ G + + K AL++G EG+ Sbjct: 166 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 224 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + + T+ ++ M G ++LNV+ +A + ++ + Sbjct: 225 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMFELADALN 267 >gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 248 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + N + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 A Sbjct: 244 RA 245 >gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] Length = 314 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 13/249 (5%) Query: 43 TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98 E + G + V L P+ ++ L T +A R+ + + VP Sbjct: 66 RKADETELVLGRNPVLECLRAKVPATALYVALGT-DADERVTESVQIAADRGISILEVPR 124 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 +D++ +HQGL L+ P D + LL+ LD+++DP N+GAI+ Sbjct: 125 TDLDRM-SNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGAIV 183 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RS AF+ G++ +R S S +AV ++++GA +P R +NL L+ G Q +G Sbjct: 184 RSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQIVG 243 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L + L++ +++G+EGKGL +E ++ + M G ++LN S AA V Sbjct: 244 LDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVAAGV 303 Query: 272 ALYITQNHF 280 L Sbjct: 304 VLAEIARQR 312 >gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 261 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ +K+ + ++ ++ ++ + G V A I L+ T + ++D Sbjct: 6 SKDNNLFKETKKLKER-KNRTKSNKYIIEGFRLVQEAFKAGLN-IECLIVTCDGKDKIDS 63 Query: 84 DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + + +I+ E QG+ + TLD N ++ D V Sbjct: 64 YLREYINKDIKIYEMVNSLFKEIISTEK-PQGIVAIVH-MNEKTLDL--NGSFYLLCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A DGII TK + +S G+L ++P ++ Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + F+ + S D+ K QE K+ L +G EG G+ + E A + + MPG + Sbjct: 180 LKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDEVYELADTKVKIPMPGNAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A +V +Y Sbjct: 240 SLNVAIATSVIMYEKIRQ 257 >gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida Fx1] Length = 248 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ + +K T ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 235 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + G++ V L N + I +L K A +++ L + + Sbjct: 4 IIGINPVMEVLQNKEKTIEKLEIFKGAKDDKINKIKRLASERNIKIFYTDKKR------- 56 Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ + + L+ + ++++LD + DP N GA++RSA F Sbjct: 57 -ENSQGVVVHVSDYDYYVDFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII +R + + + K+++GA+E++ ++++N++DA+ K+ + G + K Sbjct: 116 GIIIPERNAVRINETVVKTSTGAIEYVDIVKVTNISDAISKLKKLDYWVYGAEGEGSKDY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 QE + AL+LG+EG G+R K +E+ + + M G I +LNVS A + L Sbjct: 176 SQEKYPSRTALVLGSEGNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIIL 228 >gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] Length = 252 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ A P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ K + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL D + + G IG D K L K D +AL++G EG G+ P+ Q+ Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] Length = 258 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 13/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 E F++G V A+ + +++ ++L K N L + + PV VP ++ Sbjct: 15 TEKDFIFGTRAVMEAI-HAGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLN 73 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + + +LD +V S L+++LD + D N GAI RSA Sbjct: 74 RVTRK--NHQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAE 131 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ + S ++ K+++GAL +P +R+ NL + + G + ++ Sbjct: 132 CAGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEK 191 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S K + + +A+I+G+E G+ + A ++ M G I++LNVS +A VA+Y Sbjct: 192 SDKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYE 251 Query: 276 TQNHFAK 282 K Sbjct: 252 AMRQRRK 258 >gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO] gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae TMO] Length = 233 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 113/237 (47%), Gaps = 8/237 (3%) Query: 49 LFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +YG + + P +KI+ + ++ + + + ++K+ G Sbjct: 1 MIVYGKSVLDEIVRIRYPVKKIYLRESNNEKFQEIEEILK-KNGYHYIKTSAKHLEKLCG 59 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +E QG+ ++ + + + +++LDH+ DPHN+GAI+R+ V I+ TK Sbjct: 60 EEKN-QGIVIDLDFNYAD--ETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVSAIVITK 116 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + + K ++G + IP + ++N+ ++K+ + G+ G + K L +E Sbjct: 117 DRSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKLKNKGYWVYGADMNGKN-LYEEGFI 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282 +A++ G EG+GL +E + + M I +LNVS +A + L+ ++ F K Sbjct: 176 SPVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISRKCFMK 232 >gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437] Length = 263 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 118/269 (43%), Gaps = 12/269 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I + + K++R ++K+ + + + ++ + G + A ++ Sbjct: 2 EIHQITSARNEKVKR----WRKLST----RKGREEFGSILIEGEKLLKEA-ARAGWQVRS 52 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 ++ + + L+ D + V + P T ++V + QG+A E + +R Sbjct: 53 VIVSDEGIRGLE-DLSYLDGVSVYALYPSTFAQLVDTQ-TPQGIAAEVVVPENKEGYRIR 110 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +++LD + DP N+G ILR+A A + + + +SA G+L Sbjct: 111 GEEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMGSLFRTRIR 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R+ +L +A+ ++ G+ +G S +++ + A++LG EGKG+ + Sbjct: 171 RV-DLREAIPELKKQGYWVVGTSPRAERAHFDCHYPKQTAILLGNEGKGISAEIDSLVDD 229 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + MPG +++LNVS A + L+ Sbjct: 230 RVKIPMPGQVESLNVSVTAGILLFELLRQ 258 >gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 247 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 10/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + N + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FAK 282 + Sbjct: 244 RTQ 246 >gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 318 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G + V AL + P+ ++ Q + + + A + P +D+ Sbjct: 74 SEMVVGRNPVYEALRDGVPAVTLYVQQYIDNDERVRDVLKLAGDRGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P D + L++ LD V DP N+GAI+RS A Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHFA 281 A Sbjct: 313 VARRRA 318 >gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S] Length = 252 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ A P + + Sbjct: 50 ELLVSSGVSVPEEW---LKDDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ K + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL D + + G IG D K L K D +AL++G EG G+ P+ Q+ Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 271 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 28/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + LI K++E + LK H K H + + + GV V A Sbjct: 7 IELIKSKENECVKRLKKLHDKK-------------------HREEFKVFLVEGVKAVKEA 47 Query: 61 LNNPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 L+ I L+ ++ A + + N + VP + + I QG Sbjct: 48 LDYAIEDINLLIFSQEASKKYEEFFSRCISLLNSGKLKRIVQVPEKIFEHI-STTTTPQG 106 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + E + LD ++ ++V+D V DP N+G I+R A AF + +IT + Sbjct: 107 VLAECS-FFDKELDVLKKHNRVVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYN 165 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +SA G++ H+ +R + L+ ++ GF + + + +D+ A+++ Sbjct: 166 PKVVRSAMGSMFHVDVVRERKKEEVLEALNKRGFALYVTTPYGDVDISKLSVDDRFAIVI 225 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G E KG+ E AT + MPG ++LN + AAA+ LY + Sbjct: 226 GNESKGVDVAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270 >gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] Length = 248 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 EN ++G+ V A+ + ++L ++ L++ ++ PV+ VP + +D Sbjct: 2 KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 61 RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ + S S +A K+++GAL +P + ++ A++ + G + S Sbjct: 119 CAGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 315 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 26/286 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--------LFLYGVHTVSAALNN--PSRK 67 + A+ R H+ Y+ Q + + S F+ G ++V AL P++ Sbjct: 24 TPKAEDRPYHKAYRAKQLSERSAAKRSTGRQADRIKVNAEFVTGRNSVVEALRAGIPAKA 83 Query: 68 IFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + + + R P+ +D++ A+HQG+AL+ P Sbjct: 84 LHVAIRIDVDDRVRESLKLAAEQGIPLMEASKPELDRMTDA-AIHQGMALQIPPYEYKDA 142 Query: 127 DAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + L + LD + DP N+GAI+RSA AF DG+I +R S + Sbjct: 143 VQLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMT 202 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232 A K+++GA +P + +NLT AL+++ + G IGL + L E+ + ++ Sbjct: 203 ASAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLDAGGDMDLPNFELATGPLCIV 262 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +G+EGKGL +E ++ + + +++LN S A ++LY Sbjct: 263 VGSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGISLYEVSR 308 >gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus propionicus DSM 2032] Length = 269 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 21/270 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATKN-ALARL 81 RR K + F + +P L+G + V L I ++L K A RL Sbjct: 5 RRESTVTKPARPFA-----SDEPSEDLLWGFNAVWETLQQEGCGGISEILVQKGKAGPRL 59 Query: 82 D--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------R 130 D H V+ V + V K HQG+ + +L+ + Sbjct: 60 QQIIDHAKSHAIAVRFVDGARMG--VPKNCRHQGVVARQSEARLLSLEDLLAGITDEEQT 117 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++VLD + DP N+G+ILRSA+A +I T+ S + +A++++GA+ H+ Sbjct: 118 TQARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLC 177 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL DAL ++ GF G +++ P+ + I L++G+EGKG+RP ++ Sbjct: 178 QVVNLVDALNRLKEQGFWIFGAIAEANAAPIYTTDFSGPICLVIGSEGKGIRPLVRKQCD 237 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +LN S AAAV ++ Sbjct: 238 VLVTIPMQASFNSLNASVAAAVIMFEIARR 267 >gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] Length = 249 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 EN ++G+ V A+ I ++L + L+R ++ PV+ VP + +D Sbjct: 2 KENEMVFGIRAVIEAIQADKE-IDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + L+ + + +++LD V D N GAI R+ Sbjct: 61 RLTRK--NHQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ R S + +A K+++GAL +P + ++T+A++ + + G + S Sbjct: 119 CAGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVKVYAASEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + +A+++GAE G+ SM + G I +LNVS A+++ +Y Sbjct: 179 AFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] Length = 302 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 11/266 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALAR 80 + RD + + + P+ F+ G + AL L+A AL+R Sbjct: 32 KGQRDRTQAARPQRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSR 91 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLL 135 L D N +K VP +D + HQG+ALE + + L+ Sbjct: 92 LVDDLNAA-GVRIKYVPRAQLDALSS-HGAHQGIALEVGNFPYADVADILDRAGDGPALV 149 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLDHV D N GAI+RSA G+I + + + K+++GA+ H+P ++ N+ Sbjct: 150 VVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNI 209 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL + + GF G S ++ ++AL++G+EG G+ E + L Sbjct: 210 ARALDDLKAAGFWVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLP 269 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 G+ ++LNV+ A + A Sbjct: 270 QRGMTESLNVAQATTALCFEWLRRNA 295 >gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] Length = 329 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 24/301 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK----MQSFNQKSRHTSQPENLFLYGVHTV 57 + K ++ + +H AK K+ + KS + + G ++V Sbjct: 30 KGPTPKAEDRPYH--KAHKAKQLSERSAAKRNPGARSAGAGKSGPKGRATEEVVTGRNSV 87 Query: 58 SAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL P++ + + + + + P+ +D++ +AVHQGL Sbjct: 88 VEALRAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAVHQGL 146 Query: 115 ALETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 L+ P + N+ L + LD + DP N+GAI+RS AFS G Sbjct: 147 VLQIPPYDYADAYELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSVSAFSGHG 206 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I +R S +A K+++GA +P R SNL AL++ + G +GL D L Sbjct: 207 VIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDGDGDVSLP 266 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + +++G+EGKGL +E + + + +++LN S A + LY Sbjct: 267 DLSLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQR 326 Query: 281 A 281 A Sbjct: 327 A 327 >gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] Length = 245 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 121/275 (44%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + K +Q ++K+ + L G H A Sbjct: 1 MEIIQSKQNASIKTAR--------------KLLQGKHRKT-------SYLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAEILQVFVLEEMADRVVDVSK------VKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 ESQSLPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKG 239 G+ H+P R + + ++ GF + + + + +K D AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-IFEMIETCQKQGFPILATTLSTVSVDYRAVKTDDNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 209 ISQDMAESANQLVHINMPGRAESLNVAVAAGILMF 243 >gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] Length = 299 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 11/284 (3%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNN- 63 K++ S SH A + +++R + P + G + AL Sbjct: 4 KRQPRGRASSPSSHKASPSAPTGGRHGGGTSGRRTRQATTPSREGLIEGRRACAEALEGG 63 Query: 64 -PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P R+ A+ A L PV+ V +D + HQG+ +E++P Sbjct: 64 VPLRRALVADASGGADQTLARLVERLSEAQVPVERVSRARLDSLSS-HGAHQGIIVESSP 122 Query: 121 LLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 TL V L+++LDHV D N GAI+RSA GI+ S S Sbjct: 123 FEYATLGDVISSAGSGDALVVLLDHVTDEGNFGAIVRSAEVVGASGIVIANARSASVGVG 182 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 K+++GA+ H+P R+ NL AL ++ GF + +++ ++ L++G+ Sbjct: 183 AYKTSAGAVMHLPIARVPNLATALDRLKEAGFWVAAATEHAEQDAWSAPLGGRLCLVMGS 242 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EG G+ +E L G I++LNV+ AA V Y Sbjct: 243 EGGGISRLVRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLRR 286 >gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 19/247 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 ++ G H V AL + +L N L R A++ + PVK V + +D Sbjct: 3 DYIEGKHPVIEALR-AQMPLRCVLMADN-LKRDGQVADILRKANKYNVPVKRVSRKELDA 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAILR 152 + HQG+ E P ++ + N+ L++VLDH+ D N+GAI R Sbjct: 61 K-SERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIVLDHITDAGNLGAIAR 119 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA G+I + S +A KS++GA+ H+P +++NLT AL ++ GF G Sbjct: 120 SAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTGALDRLKKAGFWVAGA 179 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S ++ + + KIAL++G E +G+ T E+ + L G++ +LNV+ A+ Sbjct: 180 SEHAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAV 239 Query: 273 LYITQNH 279 +Y Sbjct: 240 MYEWLRQ 246 >gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 255 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ V A+N+ K+F K L R VP + ++++ Sbjct: 17 IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLSKN- 75 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ T++++ N+ L ++LD ++D N GAI+R+A DG Sbjct: 76 -NHQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P ++ ++ DA+ + + G + + + Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G+E +G+ P + A +A L + G I++LNVS A AV LY Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253 >gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] Length = 324 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 20/279 (7%) Query: 18 SHYAKLRRNHRDYKKMQ----------SFNQKSRHTSQPENLFLYGVHTVSAALN--NPS 65 + A+ R NH+ YK Q + + + + G ++V AL P+ Sbjct: 38 TPRAEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSEIIAGRNSVLEALRVGVPA 97 Query: 66 RKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS- 123 ++ + R + P +D++ AVHQGLAL+ P Sbjct: 98 ATLYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLTD-GAVHQGLALQVPPYEYA 156 Query: 124 ---PTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +D + + L++ LD + DP N+GAI+RS AF G++ +R S +A K+ Sbjct: 157 HPSDLIDPELPGTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKT 216 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGK 238 ++GA IP + SNLT AL++ GF IGL D L E+ + + +++G+EGK Sbjct: 217 SAGAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPLVVVVGSEGK 276 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL ET + + M +++LN A +V LY Sbjct: 277 GLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVA 315 >gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] Length = 254 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 14/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKI 104 + +YG+HTV + +N +I + N RL ++ + ++ I Sbjct: 2 SELVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLKSLIYRIRKMNINIQECTRRVLN-I 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG+ E P+ + D + + LL+VLD + DPHN+GA +RSA A Sbjct: 61 KSMKSAHQGIIAEVIPMPALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 II + S + +A + K ASG+ + +P++R++NL+ L+ + + +G S Sbjct: 121 AGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVLRS 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYI 275 + L D IAL++G+E G+R T+E + H+ + + +LNVS A + L+ Sbjct: 181 NQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTV-SLNVSVATGIFLFE 239 Query: 276 TQNHF 280 T Sbjct: 240 TVRQR 244 >gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112] gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] Length = 248 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ + +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 325 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 12/252 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96 R + G + V L + +A R+ +L + V Sbjct: 71 GRRGDGEGPETVLGRNPVVECLRAGVPSTALHVATGMSADERVAEAVSLAAEQGISILEV 130 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGA 149 P +D++ G A+HQGLAL+ P D + L + LD V DP N+GA Sbjct: 131 PRNDLDRLTG-GALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDGVTDPRNLGA 189 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RS AF G++ +R + +AV ++++G +P R +NLT L++ S G Sbjct: 190 VVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGLMV 249 Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL++D L++ +AL+ G+EGKGL +ET + + G +++LN S A Sbjct: 250 VGLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNASVA 309 Query: 269 AAVALYITQNHF 280 V L Sbjct: 310 TGVVLAEVARRR 321 >gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp. novicida GA99-3549] gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549] Length = 248 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ + +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] Length = 241 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V A+++ I L + L + D + VP + +D+I Sbjct: 1 MVFGIRAVIEAIDSGKE-IESLFIQRGLTGELFKELKDVLRNRNIGYQQVPIEKLDRITR 59 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ +P+ ++ V L+++LD + D N GAI R+A Sbjct: 60 K--NHQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFGAIARTAACAGV 117 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ + S + K+++GAL I R +LT ++ + G Q + + + Sbjct: 118 DALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQVVACTEKTGDT 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + A+++GAE G+ A +A + M G I +LNVS +A V +Y Sbjct: 178 IYKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQ 237 Query: 280 F 280 Sbjct: 238 R 238 >gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380] gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 246 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDW--DANLPHPFPVKTVPPQTIDKIVG 106 +YGV+ V AL + RK +LL A + RL +A ++++ + +D + Sbjct: 4 LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62 Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159 + A HQG+AL L LD RN+ +++VLD + DPHN+GA+ RSA A C Sbjct: 63 EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKK 218 GI+ K S +A K+++GAL ++P R++N+ +L+ GF GL+ D + Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + L++G EGKGLR ++ ++ + M G + +LN S A VAL+ Sbjct: 183 SLYDTDLRGNVVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLR 242 Query: 279 H 279 Sbjct: 243 Q 243 >gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797] gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797] Length = 261 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +++G + V L +++L + + +L+ A PV + + + Sbjct: 22 WIWGRNAVRETLFAGFWPMYELHLSDHLKSEEIEQLEQQAARS-TIPVFISTDKELTQKC 80 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + HQG+ + AP +++ S L ++LD + DP N GAI+RSA DG Sbjct: 81 -RASDHQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQDPFNFGAIIRSAEIMGADG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I + ++++ ++++GA+ H+P ++ ++L + G +G + + + L Sbjct: 140 IFSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLN 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 A+I+G EG G+ P+ Q T + + G ++LNV+ +A++ LY Q + Sbjct: 200 DYNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLYEASRQRN 259 Query: 280 FA 281 F+ Sbjct: 260 FS 261 >gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e] gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes Finland 1988] gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes FSL R2-561] gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459] gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161] gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064] gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175] gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e] gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype 4b str. F2365] gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99] gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208] gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816] gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A] Length = 252 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ A P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ K + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L D + + G IG D K L K D +AL++G EG G+ P+ Q+ Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] Length = 252 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL+ + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALHQDGL-VV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL +K+ +W F + T I + + QG+ A P + + Sbjct: 50 ELLVSKDVSVPEEWLKGNYDVFEIST----EISHFISETMTEQGVFAVVA-TTEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D +I + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL D + + G IG D+ K L K D +ALI+G EGKG+ + Q Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGISEELQARL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125] gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125] Length = 251 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 8/235 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + G H V AL + I +L T++ W + V V + + Sbjct: 24 RDQSGQFLIEGYHLVEEALKSTI-TIETILVTESVTLPTAWHVDERD---VILVSDRVMA 79 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + QG+A P+ + + + +DHV DP N+G ++R+ A + Sbjct: 80 DLT-ETKTPQGIAAICHIPDEPSFQELEG--MFLCIDHVQDPGNVGTMIRTCDAAGMSAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I ++ ++ + +++ G++ H+P I+ +L + + G G + + Sbjct: 137 IVSEGSVDIYNSKVVRASQGSIFHLPVIK-GDLHGWVDQFKEAGIPVFGTALEGGSTYTA 195 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL++G EG+G+ P+ + A ++ + G ++LNV+ A + LY + Sbjct: 196 IEPQARFALLVGNEGEGVEPELLDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250 >gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] Length = 316 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 16/243 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G V AL I +++ ++ A PV+ VP + + Sbjct: 72 LIGRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARL-RHESD 130 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155 A HQG+ TAP+ +DA+ + +L+V+D V DP N GA+LRSAV Sbjct: 131 GATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAV 190 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I R +A K+++G IP R +L L ++ G+ G Sbjct: 191 AAGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGT 250 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 251 AETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFE 310 Query: 276 TQN 278 Sbjct: 311 AAR 313 >gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] Length = 318 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G + V AL + P+ ++ Q + + A + P +D+ Sbjct: 74 SEMVVGRNPVYEALRDGVPATTLYVQQYIDNDERVRDALKLAGERGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P + + L++ LD V DP N+GAI+RS A Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHFA 281 Sbjct: 313 VARRRG 318 >gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 336 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 23/301 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQ--------SFNQKSRHTSQPENLFLYG 53 + K ++ + + +H K+ R K+ ++ R + E+ + G Sbjct: 35 KGPTPKAEDREYHV--AHKNKVLRERAAAKRGTGHDAAPRGAYGASRRAKTGDESEIVTG 92 Query: 54 VHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA 109 ++V AL P ++ + A R+ +L PV + +D++ G++A Sbjct: 93 RNSVLEALRARIPGTTLY-IAARVELDDRVKEILSLATGRAIPVLEIMRPELDRLAGRDA 151 Query: 110 VHQGLALETAPLLS----PTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+AL+ P LD + L + LD + DP N+GAI+RS AF G+ Sbjct: 152 VHQGVALKVPPYEYVHPGELLDRTLRNGETPLFVALDGITDPRNLGAIIRSTAAFGGQGV 211 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I +R S +A K+++GA P SNLT L+ G +GL PL Sbjct: 212 IVPQRRSAGMTASAWKTSAGAAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPG 271 Query: 223 EIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 D + +++G+EGKG+ ET ++ + + ++LN AA+V LY A Sbjct: 272 LSFADRPVVIVVGSEGKGISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRA 331 Query: 282 K 282 + Sbjct: 332 Q 332 >gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] Length = 248 Score = 221 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPP 98 +T Q EN+ +YG + V L N I ++ T + + Sbjct: 2 YTEQSENV-VYGRNAVLELLQNKPDTIEKIYFQFNTSHPKLKEILITARRQKVVTGKARL 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRS 153 + +++I G A HQG+ + + ++D + + + LL++L + DPHNIGAI+R+ Sbjct: 61 EKLNQIAGT-AKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRT 119 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + D ++ + +A + K+++GAL H+ ++ +L ++ +H GF+ Sbjct: 120 AEAAAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAAD 179 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D++ AL+LGAEG GL P+ + S + + G I++LNVS A + L Sbjct: 180 MDAELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILL 239 Query: 274 YITQNHF 280 Y Sbjct: 240 YEAMRQR 246 >gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] Length = 255 Score = 221 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 13/254 (5%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPV 93 N + + N F++G+ +V A+ + I + + + + PV Sbjct: 3 NSRRPARPKENNEFIFGIRSVIEAIK-AGKDIESIYIQRGLTGGIILELKALLKDVDAPV 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 VP + ++++ K HQG+ + + ++ + + L+++LD + D N Sbjct: 62 HNVPVEKLNRMTQK--NHQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDGITDVRN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI R+A I+ + S +A K+++GAL IP R NL + G Sbjct: 120 MGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q + + + + A+++GAE +G+ + A +A + M G I +LNVS Sbjct: 180 LQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVS 239 Query: 267 NAAAVALYITQNHF 280 +A V LY Sbjct: 240 VSAGVILYEAIRQR 253 >gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 249 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L +DA + L++VLD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus denitrificans PD1222] Length = 265 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 132/230 (57%), Gaps = 12/230 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E ++L+G+H V AL NP R+ +L+ T+NAL RL LP + V +T D+ V Sbjct: 27 ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRLGP---LPPDLAHEIVDARTFDRAVP 83 Query: 107 --KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E+VHQG ALE PL +L + LL+ LD V DPHN+GAILRSA F Sbjct: 84 LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I R+S E+ LAK+ASGALE PY+R++NL D L ++ S G+ +GL + L Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203 Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +++ I L+LGAEG GLR +T+ET + + +LNVSN Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253 >gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 252 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSIKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ + P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISAE-ISHLISETMTEQGVFAVVT-ISEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D +I + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L D + + G IG D K L K + +AL++G EG G+ P+ QE Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGISPELQERL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] Length = 248 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ + +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] Length = 248 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106 +YG+H V + + K + NA +++ + +K + ++ V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6] gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6] Length = 250 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 15/248 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTID 102 LYG + V AL R I +L+ + N + A + PV+ V Q +D Sbjct: 2 TELLYGRNAVREALRANRRTIKRLVVS-NGVQETGIIAEIIKLAEQIGVPVQRVERQQLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K + ++A HQG+ LET L+ LL++LDH+ DP NIG +LR+A Sbjct: 61 KQL-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+ R + + + ++SGA EH+ + + NL + + G +GL D Sbjct: 120 VVGVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDD 179 Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ N +AL++GAEG GL +E + L M G I +LN S A ++ LY Sbjct: 180 EQAQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLY 239 Query: 275 ITQNHFAK 282 K Sbjct: 240 NAWRQRKK 247 >gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] Length = 263 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 110/262 (41%), Gaps = 10/262 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82 ++ K++ + +K + + + G+ P K+ ++ +++ + Sbjct: 6 SNARIKRLVNLKKKRKLRDEESVFLVEGIRMFREV---PLDKLKEVYVSESFYKKEKDTV 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDH 140 + V+ + QG+ L ++ ++ + ++ L+MVLDH Sbjct: 63 KEVLKDSKVRVEELTDTVFAH-ASDTKTPQGI-LCVVEQMNHEINELTSAKCPLIMVLDH 120 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G ILR+A GI+ + + +S G++ +P++ + +L +Q Sbjct: 121 LQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVEDLGKGIQ 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G T + ++E + A ++G EG GLR + + A + M G + Sbjct: 181 DLKDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVKIPMLGQV 240 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LN + A++V ++ K Sbjct: 241 ESLNAAIASSVLMFEAARQRRK 262 >gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2] Length = 311 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 12/253 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPV 93 NQ R + + G ++V AL P+ ++ + R + Sbjct: 56 NQARRRKKENGPNMVAGRNSVLEALREDVPATAMYVAGRIDSDDRVREAITLATKRGISM 115 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 +D++ +A+HQG+AL+ P + + LL+ LD + DP N Sbjct: 116 LEASKPDLDRLTD-DAIHQGIALQIPPYDYAEPRDLLEVAADRAEAPLLVALDGITDPRN 174 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA AF G+I +R + S +A K+++GA I ++ NL A+ ++ Sbjct: 175 LGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQN 234 Query: 207 FQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL D + L + + D + +++G+EGKG+ + + + + ++LN Sbjct: 235 VFVVGLDMDGEVELPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNA 294 Query: 266 SNAAAVALYITQN 278 AAAV+LY Sbjct: 295 GIAAAVSLYEVAR 307 >gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 245 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + L+R HR + L G H A Sbjct: 1 MEIIQSKQNASIKTARKL----LQRKHR-----------------KTSYLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R + + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGADILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QSQALPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R + + ++ + + + +K AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKHDLTVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 209 ISKEMAESADQLVHINMPGQAESLNVAVAAGIIMF 243 >gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 256 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 111/251 (44%), Gaps = 8/251 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K ++ ++K ++ + + F+ G ++V AL + S +I +L +++ LD + + Sbjct: 11 IKDIKKLSEK-KYRYEKKLFFVEGKNSVFEALKS-SFEIKYVLVSEDCDIDLDVEKDR-- 66 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + V KI Q + D ++ L ++LD V DP N+G Sbjct: 67 ---LIFVDKGIFKKISDT-VTPQMIMAVVKMPDYNVNDLIKEDGLYIILDEVQDPGNLGT 122 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF+ D + T + +S G++ H+P + + + + G + Sbjct: 123 IIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVNDVPVDKLFEALKRNGVRV 182 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + ++K + + IALI G E +G+ + M G+ ++LNVS AA Sbjct: 183 LSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDIYVDGSFKIPMDGMAESLNVSVAA 242 Query: 270 AVALYITQNHF 280 ++ LY +Q Sbjct: 243 SICLYESQRQR 253 >gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 269 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 10/260 (3%) Query: 28 RDYKKMQSFNQKSRH---TSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81 +D +K++S K R + +G + V + L + +KI+ + Sbjct: 5 KDKRKVRSDRSKGRTTSSRRSEDKDLCWGRNAVISMLETVPSACKKIYLATGIQTTFRDD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVL 138 + V +D+I G E HQG+ P + LL+ + Sbjct: 65 LLSLAGKNAVEVTEANGSYLDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAM 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DHV DPHN GA++R+A A G+I R S + + K+++GA +P ++NL + Sbjct: 124 DHVKDPHNFGAMIRTAEAVGALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRS 183 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + G+ +GL + + + DK+ L++G+EG+GL + E + + M G Sbjct: 184 MEILKKEGYWVVGLDHEEPRDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVG 243 Query: 259 IIKALNVSNAAAVALYITQN 278 +LN S AAA+ ++ + Sbjct: 244 KTGSLNASVAAALGMFEWRR 263 >gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 18/254 (7%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKT 95 R + + ++ G ++V AL + + + A R + + Sbjct: 63 PRKRAAGDAEWIIGRNSVVEALR-EDVPVNGIYVAEGAERDGRLREAFLLASEKGISLLE 121 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148 V +D++ G HQGLA D + L++ LD V DP N+G Sbjct: 122 VTKVELDRLTGFNG-HQGLAARIPAYEYAHADDLIDRAAEIGEKPLIVALDQVTDPRNLG 180 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA AF G++ +R + +A K+++GA IP + NLT L+ G Sbjct: 181 AIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTVNLTRQLKAYQDAGCM 240 Query: 209 TIGLSSDSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +GL + L + + + + +++GAEG GL QET + + M +++L Sbjct: 241 VVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETCDQIVSIPMANSVESL 300 Query: 264 NVSNAAAVALYITQ 277 N AA+V LY Sbjct: 301 NAGVAASVVLYAVA 314 >gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus DSM 2366] Length = 254 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 13/254 (5%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPV 93 N + + N F++G+ V A+ I + + + + PV Sbjct: 3 NSRRPARGKESNEFIFGIRAVIEAIKAGKE-IESIYIQRGLTGGIIMELKALLKEVDAPV 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 VP + ++++ K HQG+ + + ++ + + L+++LD + D N Sbjct: 62 HNVPVEKLNRMTLK--NHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI R+A I+ + S +A K+++GAL IP R NL + G Sbjct: 120 MGAIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q + + + + A+++GAE +G+ + A +A + M G I +LNVS Sbjct: 180 LQIVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVS 239 Query: 267 NAAAVALYITQNHF 280 +A + LY Sbjct: 240 VSAGIILYEAIRQR 253 >gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel] gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 249 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 141/247 (57%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99 + +++YG H AAL N +RK +LL T+N + ++ + + +P K V Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNIN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154 TI+ ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSA Sbjct: 62 TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 V F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 Query: 275 --ITQNH 279 QNH Sbjct: 242 SIFIQNH 248 >gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] Length = 262 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + + ++ ++ + G V A+ I L+ T+ +LD Sbjct: 6 SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIKAN-LDIDYLILTEIGYEKLDN 63 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + V + ++ E QG+ + + LD + D V Sbjct: 64 YIDKDKIKKHKVYCITDTLFKELASTE-NPQGIIAIVK-MNNKKLDF--QGDFYLFCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A +GI+ +K + +S G+L ++P + ++ Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKS 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF I S +S K +E KI L +G EG G+ + + A + MPG + Sbjct: 180 LKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A ++ +Y Sbjct: 240 SLNVAIATSIIIYEKVRQ 257 >gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] Length = 413 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 17/288 (5%) Query: 6 KKKSEKIFSLKDSH--YAKLRRN--HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +K++K ++ ++RRN +R+ + + + + R+ + +G H A L Sbjct: 100 SQKTDKPRRSLNARISPREIRRNDLNREEEVLVQNSGEIRNNENHLDDIFWGRHATQAIL 159 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + R + ++ T + + L V+ V + I VHQG+AL+ Sbjct: 160 ESG-RPVHRIWCTAELRSSPKFLQLLKDSKSLGVLVEEVSWARLGYIT-HGGVHQGIALQ 217 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 TA + L + S +L+ LD + DPHN+GAI+RSA A G++ +R S Sbjct: 218 TAASKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSA 277 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + +AK A+GALEH P R+ NL +L ++ G+ IGL+ D L + + Sbjct: 278 GLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFVLNEVDLLGPLV 337 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G+E KGL T+ + + + G+ +LN S AA+++LY + Sbjct: 338 LVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIAS 385 >gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152] gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152] Length = 248 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + S I ++ K L ++ + TVP + ++++ K Sbjct: 7 IFGLRAIIEAIESGS-TINKIYLQKGLRGSLYYELDKLIKDSKIATSTVPVEKLNRL-SK 64 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG + +P+ L+ + ++LD ++D N GAI+R+A + Sbjct: 65 NSNHQGAVAQISPIDFYDLETLLDDTLEAEKVPFFLILDQLSDVRNFGAIIRTAECTGVN 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A K+++GA +P ++ ++ DAL + + +T+ + + + Sbjct: 125 GIIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASNIKTVAATEKTDSSI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N IA+I+G+E +G+ P + A L + G I++LNVS A V LY T Sbjct: 185 YDVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVSVACGVFLYETVRQR 244 Query: 281 A 281 + Sbjct: 245 S 245 >gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 278 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 111/268 (41%), Gaps = 17/268 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + ++++ + + G S P ++ + T++ L + +A Sbjct: 6 SNSQVKQVSAIAKRAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62 Query: 86 -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNS 132 L +TV + + + + QG+ D + + Sbjct: 63 DRLLAGCRYETVTDEVMKAMADTQ-TPQGILALCRQFSYELSDILGERKEGDEHTQEKAP 121 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++L+ + DP N+G ILR+ G+I + + + +S G++ +P++ + Sbjct: 122 AQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYV 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L A++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 182 EDLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYI 241 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN + AA++ +Y T Sbjct: 242 KIPMLGKVESLNAAVAASILMYETARQR 269 >gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] Length = 249 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 EN ++G+ V A+ I ++L + L+R ++ PV+ VP + +D Sbjct: 2 KENEMVFGIRAVIEAIQADKE-IDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K HQG+ + L+ + + +++LD V D N GAI R+ Sbjct: 61 RLTRK--NHQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ R S + +A K+++GAL + + ++T+A++ + + G + S Sbjct: 119 CAGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVKVYAASEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + +A+++GAE G+ SM + G I +LNVS A+++ +Y Sbjct: 179 AFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland 1988] gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28] Length = 221 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 9/213 (4%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129 ++ + + V+ VP Q I+K+V HQG+A + A LD + Sbjct: 4 GSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAA 61 Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 ++LD + DPHN+G+I+R+A + GII KR S + +AK+++GA+E Sbjct: 62 AEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAME 121 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++P +R++N+ ++++ G G + + +A+++G+EG G+ + Sbjct: 122 YVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVR 181 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + HL M G + +LN S AA++ LY Sbjct: 182 EKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 214 >gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] Length = 284 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 11/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + AL LLA T+ AL+ L P+ VP +D + Sbjct: 39 IEGRRAATEALRAGVPVHRALLADGAETEGALSGLIGALER-GGVPIARVPRAKLDALSS 97 Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ LET P T++ V + L++VLDHV D N GAI+RSA G Sbjct: 98 -HGAHQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEGNFGAIVRSAEVVGAAG 156 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + + K+++GA+ H+P R+ N+ AL+ + GF G + ++ + Sbjct: 157 VIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGAGFWVGGATEHARDTVW 216 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +IAL+ G+EG GL E+ L G ++LNV+ AA V Y Sbjct: 217 DASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRR 274 >gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho melanesiensis BI429] Length = 238 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + + L N + ++ +L P + ++K+ E Sbjct: 3 VYGRNVLKEILENNVNVKMIYFSNVSSKSIEKLIELVKEKR-LPFTIANNRILEKL-SNE 60 Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ ++ + L++LD + DPHN GAI+R++VA D ++ K Sbjct: 61 KKHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNFGAIIRTSVAAGADALVIPK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + + K + G L I ++N+ ++K+ + G G + D K+ + Sbjct: 121 NNSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGIWVYGAAMDGKE-YFKVDLK 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A++LG EG G+R + + + M +++LNVS +A + LY Sbjct: 180 KPVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232 >gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] Length = 252 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 6 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 65 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 66 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 125 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 184 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 185 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 244 Query: 276 TQNHF 280 Sbjct: 245 AVRQR 249 >gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA2] gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL001PA1] gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL044PA1] gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA2] gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA3] gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA3] gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA4] gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL060PA1] gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA2] gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL103PA1] gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp. P08] Length = 318 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61 + + + + A+ R H+ YK Q +K + ++ G + V AL Sbjct: 24 RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + + + A +RL H + +D++ G + HQG+AL Sbjct: 84 -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 T+D + + L++ LD V DP N+GAI+RSA AF G++ R S Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +A K+++GA +P SNL AL K + G+ +GL+ ++ + + + Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G+EG+GL T+++ + + + +++LN S AA++ALY Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310 >gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] Length = 252 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 17/244 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG H + AL R +++ K+ V+ V + +D + G Sbjct: 7 IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAEQKGCKVRNVSREELDDLSG-GVD 65 Query: 111 HQGLALE--------TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 H+G+ L P + D V L+++LD + DP N+GAILRSA Sbjct: 66 HRGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLGAILRSAD 125 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ D ++ +R S + AV+ K ++GA H+P + N+ A++ + GF G Sbjct: 126 QFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFWVYGADMG 185 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K+A++LGAEG+G+ +E + + G I + NVS A + LY Sbjct: 186 GGSA-WNFSLKGKVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVAGGILLYE 244 Query: 276 TQNH 279 + Sbjct: 245 CRRQ 248 >gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] Length = 247 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNAQALDG-V 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A + + + + LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244 Query: 279 HFA 281 Sbjct: 245 QRG 247 >gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 249 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 244 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ V A+ + I ++ K L + + + VP + + K+ Sbjct: 7 IFGIRAVIEAIESG-ESIDKIFIQKGLSGELFSELKRTLSKGNYNISYVPQEKLYKLS-- 63 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + +P+ L+ A + ++LD +ND N GAI+R+A D Sbjct: 64 KGNHQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II ++ + +A K+++GA+ +IP +++++ DA+ + S G QT+ + + + Sbjct: 124 AIIIPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+I+G E KG+ P +T A L M G I +LNVS A LY Sbjct: 184 YNIDFKKPTAIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLYEVVRQR 243 >gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1] Length = 252 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH--PFPVKTVPPQTIDKI 104 LYG + V AL R +LL + A L + PV+ + + Sbjct: 3 DLLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVPVERIDRRE-LDR 61 Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++A HQG+ALE + L + L++LDH+ DP N+G +LR+A Sbjct: 62 RLRDANHQGVALECSDYPYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVV 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ R + + + ++SGA+EH+ ++NL ++++ G +G+ D + Sbjct: 122 GVHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGVEDDER 181 Query: 218 KP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + +AL+LGAEG GL T+E + L M G I +LNV+ A ++ LY Sbjct: 182 AYEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHA 241 Query: 277 QN 278 Sbjct: 242 WR 243 >gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] Length = 246 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTI 101 Q N ++G+ + A+N+ S I ++ K L + + + VPP+ + Sbjct: 2 QNNNTQIFGIRAIIEAINSGS-TIDKVFIQKGLRGELFNELDHLLRSNAISTSFVPPEKL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 +++ K HQG+ +P+ LD + ++LD ++D N GAI+R+A Sbjct: 61 NRLTKK--NHQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTA 118 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 DGII K+ +A K+++GA+ +P ++ ++ DA+ + S G Q + + Sbjct: 119 ECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATE 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L +A+++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 179 KTENTLYDVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLY 238 Query: 275 ITQNHF 280 Sbjct: 239 EIVRQR 244 >gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] Length = 332 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 26/299 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84 Query: 65 -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +++ R + + + +D+I + HQG+ L+ P Sbjct: 85 VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L + + L + LD V DP N+GA++RSA AF + Sbjct: 144 QYSSLRELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +GL K + Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKAIEGLKERGYYVVGLDGGGDKLV 263 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + D + ++LG+EG GL +E+ ++A + + +++LN S AA ++LY Sbjct: 264 GETGFETDPLVVVLGSEGSGLSRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSR 322 >gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae R3021] gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 189 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 7/182 (3%) Query: 106 GKEAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ L LD + + + LL+VLD V DPHN+GA LR+A A Sbjct: 5 ADGEVHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGA 64 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + Sbjct: 65 VAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATE 124 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 125 TIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVR 184 Query: 279 HF 280 Sbjct: 185 QR 186 >gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++K+ + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L I Q+ +N LA+L V V + + E+ QGL E Sbjct: 40 LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSES-PQGLIAE 97 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 A ++ +D ++ ++L++V DP N+G ++R+A A +I + S + Sbjct: 98 VA-IIEEVIDF--SASKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+ R+ N + + + + + + ++ AL++G EG Sbjct: 155 RSMQGSNFHLAIARM-NEEECFAALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 329 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 26/275 (9%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP-- 88 ++ + + R TS + + G ++V AL + +L R L Sbjct: 55 RLAARRRVDRFTSDSDEFVI-GRNSVLEALRAHVPASVLYVLNRIEHDDRTREIIRLAGL 113 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---------------- 132 + +D+I + HQG+ ++ AP TL + + Sbjct: 114 EGLKILEADRLEMDRIARTD-HHQGVIIKAAPYQYHTLQELADKAEAKASAMKAASPAAR 172 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P Sbjct: 173 ALAQPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLP 232 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247 R+ NLT A++ + G+ +I L + E ++D + ++LG+EGKG+ +E Sbjct: 233 VARVVNLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQ 292 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 S+ + M ++++LN S AA +AL+ A+ Sbjct: 293 CDSIVSIPMTSLVESLNASVAAGIALFSVHQARAR 327 >gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] Length = 327 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 30/289 (10%) Query: 18 SHYAKLRRNHRDYKKMQSFNQK---------------SRHTSQPENLFLYGVHTVSAALN 62 + A+ R H +KK Q ++ S + G ++V AL Sbjct: 38 TPKAEDREYHPAFKKKQEAEKRAAGQRQRGAARGVVRGTRRSTDGVEVIAGRNSVLEALR 97 Query: 63 NPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 I + + R + V +D++ + VHQG+A + Sbjct: 98 TDV-PITTVYVATRLDHDDRTREILQHAASAGLALLEVTKPELDRLTDGQ-VHQGVAAQV 155 Query: 119 APLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P +D + + L++ LD V DP N+GAILRSA AF G++ +R S Sbjct: 156 PPYEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGVLVPERRSAG 215 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIA 230 +A K ++GA H+P R +NL AL ++ G +GL D + + E + D + Sbjct: 216 VTASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGELSLATDPLV 275 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278 +++G+EGKG+ +ET +A + + +++LN A ++ALY Sbjct: 276 VVVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQ 324 >gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 256 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S +++ +++ KMQS + + + G H V A+ + Sbjct: 4 ERITSNQNNRV-------KEWTKMQSKKGRVK----SGEYVIEGWHIVDEAIRHRQTIKQ 52 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLD 127 ++ ++ L L D + + P+ I E QG+ L T D Sbjct: 53 LMVVDESYLGDLPVD----DDTEIFLITPEIAKHISSTE-TPQGVFAVLNTEDYHEQIPD 107 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ + ++LD++ DP NIG ++R+A A +GI+ K + + + +S G+ H+ Sbjct: 108 DLKGA--WLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQGSQFHM 165 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++ + + G +T G D + ALI+G EG G+ PK E Sbjct: 166 KLF-TGDILEWMAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVDPKILE 224 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ M G ++LNV+ A + L+ Sbjct: 225 KTDQNLYIPMNGEAESLNVAVATGILLF 252 >gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] Length = 252 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 16/243 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G + V AL ++ ++L + A A H PV+ VP +D++ Sbjct: 8 LVGRNPVREALEQEETRVEKVLLQEGAGGPALEAIRRAARAHGVPVQMVPKARLDRLAA- 66 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155 AVHQG+ AP+ TL+ + + LL+ LD + DPHN GAILR+A Sbjct: 67 GAVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLVALDQIEDPHNYGAILRTAA 126 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ + + +A K+++GA IP R++NLT AL+ + + GF G S Sbjct: 127 AAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLTRALESLKAHGFWVAGASPS 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + + + L+LG EG+GLRP + + + + G +++LNVS AA + L+ Sbjct: 187 GEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPLRGPVESLNVSVAAGILLFA 246 Query: 276 TQN 278 Sbjct: 247 ATR 249 >gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 260 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 7/240 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 H ++ + G V AL + + IF + K+ D + L + V Q Sbjct: 23 HRTKNNQFLIEGFRFVEEALKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQ 82 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K++ QG+ + L+ +++D V DP N+G I+R+A A Sbjct: 83 VL-KLLSDTETPQGITAVV---DNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKA 138 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I TK + +S G++ H+P I+ ++L + + GF + S ++ K Sbjct: 139 LGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDLNK-VNFLKEKGFNLVASSLNTDKN 197 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K + +G EG G+ + A + MPG ++LNVS AA V ++ Sbjct: 198 FYDVDLKGKKIIAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 257 >gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 249 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 11/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103 E+ ++G+H++ AL +L + +L L V VP Q K Sbjct: 2 EESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAEQNTIKVSYVPIQKFKK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG T+ + + ++ L ++LD + D N+GAILR+A Sbjct: 62 Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S + K+++GA +IP ++++L DAL + S G + + ++ + Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + N +AL++G EG+G++P + A L M G I++LNVS A V LY Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILYEC 239 Query: 277 QNH 279 Sbjct: 240 LRQ 242 >gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 268 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 118/264 (44%), Gaps = 13/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84 N+ K++ ++ +KS+ + + + G+ + A P ++ ++ T L + + D Sbjct: 6 NNDRVKQVVNYIEKSKARREDDVFVIEGMKMLREA---PVLQVREVYVTTRFLDKASEED 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--------SQLLM 136 + + + V + + K+ + QG+ + + + L++ Sbjct: 63 KEILWRYGAEEVSDEVMKKMAATQ-TPQGVIAVISQYHYTMEEVLEGYNQDDEGAKPLIL 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+++ DP N+G +LRS GII +K + + + +S G++ +P+I + ++ Sbjct: 122 VLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVESIP 181 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + L+ + + G T +K ++ A ++G EG GL +T + A + + M Sbjct: 182 EVLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYILIPM 241 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 G ++++N + ++A+ + Sbjct: 242 KGEVESMNAATSSAILTFEASRQR 265 >gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 247 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALDG-V 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A + + + + LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244 Query: 279 HFA 281 Sbjct: 245 QRG 247 >gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201] gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 322 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 15/249 (6%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G ++V AL P++ +F + + P +D+ Sbjct: 73 KEDLVTGRNSVLEALRGGVPAKTLFVASKIEVDDRVKDILQLCAERQVPTLEASRGELDR 132 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRS 153 + +A+HQG+ L+ P P D + + LL+ D + DP N+GAI+RS Sbjct: 133 LSS-DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAADGITDPRNLGAIIRS 191 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF+ DG+I +R S +A K++SGA +P + +NLT LQ G+ +GL Sbjct: 192 VSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCKKQGYFVVGLD 251 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 L Q E+ + + +++G+EGKGL E ++ + + +++LN S A + Sbjct: 252 GGGDMSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIESAMESLNASMAVGIT 311 Query: 273 LYITQNHFA 281 LY A Sbjct: 312 LYEIARRRA 320 >gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 261 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 112/255 (43%), Gaps = 9/255 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81 + + K+++ N+K +H ++ + G+ V AL + KI L ++ + Sbjct: 7 SKENSIIKEVKKLNEK-KHRDLKKSFIVEGLRFVREALESD-FKIQYLFVSEKNYDKFIL 64 Query: 82 -DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + + F V V + I + QG+ + M++D Sbjct: 65 KELKELIKKEFQVIKVTESILKDICNTQ-TPQGIVAVV---QYKEVAWKLTKGFYMLVDK 120 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+I TK + ++ G++ IP I + ++ Sbjct: 121 VQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDNFSKIK 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ GF+ I S D++ N+K+ + +G EG G+ K + + + + MPG + Sbjct: 181 ELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIPMPGNV 240 Query: 261 KALNVSNAAAVALYI 275 ++LNV AAA+ ++ Sbjct: 241 ESLNVGVAAAIMMFE 255 >gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA1] Length = 318 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61 + + + + A+ R H+ YK Q +K + ++ G + V AL Sbjct: 24 RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + + + A +RL H + +D++ G + HQG+AL Sbjct: 84 -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 T+D + + L++ LD V DP N+GAI+RSA AF G++ R S Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +A K+++GA +P SNL AL K + G+ +GL+ ++ + + + Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G+EG+GL T+++ + + + +++LN S AA++ALY Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310 >gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 141/247 (57%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99 + +++YG H AAL N +RK +LL T+N + ++ + + +P K V Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNLN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154 TI+ ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSA Sbjct: 62 TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 V F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 Query: 275 --ITQNH 279 QNH Sbjct: 242 SIFIQNH 248 >gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] Length = 270 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVREA 46 Query: 61 LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 ++ I ++ ++ A RL D + V P + + + + Sbjct: 47 IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G+L H+ +R + ++ + F + + + + + + Sbjct: 162 IYNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFC 221 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++G E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 222 VVIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] Length = 269 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 114/233 (48%), Gaps = 10/233 (4%) Query: 52 YGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +G + V L + RK+F L ++ P+ V + ++++ G Sbjct: 25 WGRNPVLTLLEHRPELCRKVFLLAGAQDEFRDTVARLCADGRIPLDFVEREELERLSG-G 83 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 AVHQG+A AP+ LD V + L+++LDH DPHN+GA++R+A + Sbjct: 84 AVHQGVAARVAPIPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACV 143 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + S + + + K+++GA +P ++ N+ A++++ GF +GL + + + Sbjct: 144 VCQNDRSATVNGTVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETVWS 203 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++AL++G+EG+G+ T + + M G LN S AAA+ ++ Sbjct: 204 SALPERLALVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFE 256 >gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355] Length = 188 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 83/164 (50%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + P L L+VLD V DPHN+GA LRSA A +I K S +A Sbjct: 24 VSGRRLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAK 83 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K ASGA E++P IR++NL L+ + + +G + ++ + Q +AL++GAEG Sbjct: 84 KVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMALVMGAEG 143 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+R T+E + + M G + +LNVS A V L+ Sbjct: 144 EGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRN 187 >gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 325 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 17/293 (5%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSA 59 + K ++ + +H K RR R ++ + KS + + G + V+ Sbjct: 35 KGPTPKAEDRPYHP--AHKRKARREARQAQEAAIARARAKSSIRVPAGHELIAGRNPVAE 92 Query: 60 ALNNPSRKIFQLLATKN-ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 A I ++ N R++ L PV V + +D + A HQG+A+ Sbjct: 93 A-ARAGVPIERVFVLDNVKDDRVEEVIRLASSMGAPVFEVTRRDLD-VATDGASHQGVAI 150 Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 E +D + LL+ LD V DPHN+GA+LRSA AF DG+I +R S Sbjct: 151 EVRGYEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRS 210 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDK 228 + K ++GA +P R +NL AL+ GF +GL PL + + Sbjct: 211 AGVTTAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLADGP 270 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L+ GAEG GL ++T + + + +++LN + A +ALY + A Sbjct: 271 LVLVAGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEVASVRA 323 >gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 249 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 VVRQR 246 >gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 270 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 ++ I ++ ++ A RL D + V P + + + + Sbjct: 47 IDYQIECINLVMFSQQAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G+L H+ +R + ++ + F + + + + + + Sbjct: 162 IYNPKTIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++G E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 222 VVIGNESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] Length = 318 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61 + + + + A+ R H+ YK Q +K + ++ G + V AL Sbjct: 24 RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83 Query: 62 NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + + + A +RL H + +D++ G + HQG+AL Sbjct: 84 -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 T+D + + L++ LD V DP N+GAI+RSA AF G++ R S Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229 S +A K+++GA +P SNL AL K + G+ +GL+ ++ + + + Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G+EG+GL T+++ + + + +++LN S AA++ALY Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310 >gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 260 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 9/241 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98 + Q + G V AL + KI + + + +L N FPV + Sbjct: 23 YRVQEGKFLIEGFRFVREALYSD-FKISSIFLSSDFTDKWEKLLLKENFQCDFPVYFMEK 81 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 +V E QG+A + L A ++ D + DP N+G I+RSA A Sbjct: 82 GVFKAMVNTE-NPQGIAAVV---ENRELKASNKEGFYILADKIQDPGNMGTIIRSAHASG 137 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I TK + +S G++ H+P I +L ++ + GF+ IG S D+ Sbjct: 138 ALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIYDEDLKK-VELLRKSGFKLIGSSLDTDI 196 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+ + +G EG GL Q+ + + MPG ++LNVS AA++ ++ Sbjct: 197 SFYSANLKGKVIIAVGNEGNGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVR 256 Query: 279 H 279 Sbjct: 257 Q 257 >gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 255 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + G + HQG+A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 GVAG-QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 VVRQR 246 >gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] Length = 328 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 20/297 (6%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ +H K R Q + + + G + V AL Sbjct: 32 KGPTPKAEDRVYH--KAHKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEAL 89 Query: 62 NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 PS+ ++ + + R P+ +P +D++ +VHQG+A++ Sbjct: 90 RTEIPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQI 148 Query: 119 APLLSPT-----LDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 P P LD + L + LD + DP N+GAI+RS AFS DG+I Sbjct: 149 PPYKYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIP 208 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EI 224 +R S + +A K+++GA IP +NLT +Q+ G IGL L E+ Sbjct: 209 ERRSAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALEL 268 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N+ + +++G+EGKGL E + + + +++LN + A + LY A Sbjct: 269 ANEPLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325 >gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] Length = 333 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 40/295 (13%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63 + A+ R H+ YK+ Q+ N++ + +S+ ++L + G + V AL Sbjct: 25 TPKAEDRVYHKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCG 83 Query: 64 -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P+ ++ + R H + +D+I + + HQG+ ++ P Sbjct: 84 VPASTLYVAARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPF 142 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L + L + LD V DP N+GA++RSA AF + Sbjct: 143 QYSSLAELVERADKKSRAMEAANSTSARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL + Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALV 262 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + D + ++LG+EG GL +ET S+A + M ++++LN S AA + LY Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 254 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 20/267 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S +++ + +KK+ + + + + G H + AL + ++ Sbjct: 2 KRIESTQNALV-------KYWKKLATTR---KERERSGEFIVEGFHLIEEALKH-KEQVL 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128 Q++ + + W + V +V + + QG+ P+L +A Sbjct: 51 QIIVREGVDLPMLWPIDGIAIVEVTSVVAKEFAE----TETSQGVFAICKQPVLEE--EA 104 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + ++++D V DP NIG ++R+A A D +I K + + ++A G+ HIP Sbjct: 105 KTSWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R LT+ + + G G + D P A+I+G EG G++P+ Sbjct: 165 VVR-EELTECVDFLQDQGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGIQPQLLAM 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A + LY Sbjct: 224 TDQNIIIPILGQAESLNVAVATGIVLY 250 >gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida 3523] Length = 248 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106 +YG+H V + + K + NA +++ + +K ++ G Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63 Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + A+E + + + + + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + GV+ V L N + I +L + N +L+ + + + Sbjct: 4 IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKIASERNIKIFYTDKKI------- 56 Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + L+ + ++++LD + DP N GA++RSA F Sbjct: 57 -ENSQGVAVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII +R + + + K+++GA+EH+ ++++N+++AL K+ + G + K Sbjct: 116 GIIIPERNAVRVNETVVKTSTGAIEHVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E + AL+LG+EG G+R K +E + + M G I +LNVS A + L Sbjct: 176 SKEKYPSRTALVLGSEGNGIRKKVKENCDVLIKIPMYGKINSLNVSVAGGIIL 228 >gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68] gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp. longum F8] gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. longum JDM301] gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68] gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84 Query: 65 -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +++ R + + + +D+I + HQG+ L+ P Sbjct: 85 VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L+ + + L + LD V DP N+GA++RSA AF + Sbjct: 144 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL K + Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 263 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E ++D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY N Sbjct: 264 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 323 Query: 280 FAK 282 K Sbjct: 324 RRK 326 >gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 332 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 11/277 (3%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIF 69 K + ++ + A + + + S + + + + + G ++V AL F Sbjct: 49 KRKAAEERYAAAGGKGRPGVRAVGSNSNRKSPKASDDTETVTGRNSVLEALRAKIPATAF 108 Query: 70 QLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + R+ ++ PV V +D++ G + VHQG+AL+ P Sbjct: 109 YIAQRVEMDDRVKEMLSIATNRGIPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQ 168 Query: 128 AVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + LL+ LD V DP N+GAI+RS AF G+I +R S S ++ K++ Sbjct: 169 DLLEQIIDRGEVPLLVALDGVTDPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTS 228 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239 +GA IP +NLT L++ G +GL+ D L E+ + + +++G+EGKG Sbjct: 229 AGAAARIPVALAANLTATLKEFKKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKG 288 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L ET + + + ++LN AA+VALY Sbjct: 289 LSRLVTETCDQVVSIPISTATESLNAGIAASVALYQV 325 >gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 242 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 6/236 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ +++G H AALNNP R I + T++ L + K V + + + Sbjct: 2 TDKKSYYIFGTHASLAALNNPFRVIRYIYCTESCFLSLSKLIQKHN---YKIVTTKFLHQ 58 Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++G + VHQG+A+ T PL +D + + +LD + D +N+GAI+RSA AF Sbjct: 59 LLGSQIVHQGIAVNTIPLTINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDIS 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II + S E+ +AK A GALE I +++ NL + + + F IGL + L Sbjct: 119 TIILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQL 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + K A +LG+E KGLR T++ + + M ++LNV+ AA + Y + Sbjct: 179 TEQTFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYES 234 >gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ GV+ V++++ N + + ++L A L ++ +A V+ V Q +D V Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALDG-V 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158 G HQG+A A + + + + LL+VLD V DPHN+GA LRSA A Sbjct: 65 GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244 Query: 279 HFA 281 Sbjct: 245 QRG 247 >gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] Length = 246 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G + V AL R + ++L + + P++ V ++K+ G Sbjct: 5 LAGRNQVREALR-AGRPLNKILLAPHLEGQAIGEIINLARERGVPLQRVNRAALEKLAGH 63 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A L+ + L++LD V DPHN+GAILRSA A Sbjct: 64 H--HQGVVALAAAREYADLEDLLARAGEAGEPPFLIMLDRVEDPHNLGAILRSAEAVGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R +A +A++A GA E++P R++NL L+++ G IG + D+ + Sbjct: 122 GVIIPRRRGVGLTAAVARAAVGAQEYVPVARVTNLARTLEELKGKGLWAIGAAGDAGQEA 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG+EG+GL P + HL M G I +LNV+ AA V +Y Sbjct: 182 FNADFTVPLVLVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQR 241 Query: 281 AK 282 + Sbjct: 242 GQ 243 >gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 255 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 VVRQR 246 >gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 140/247 (56%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99 + +++YG H AAL N +RK +LL T+N + ++ + +P K V Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYP-KQVNLN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154 TI+ ++ + HQG+AL+ + + + +++ V ++ +++LD V D +N+G+I+RSA Sbjct: 62 TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 V F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 Query: 275 --ITQNH 279 QNH Sbjct: 242 SIFIQNH 248 >gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] Length = 245 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+N KIF K L R + + VP + ++++ Sbjct: 7 IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLTKN- 65 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + + + L ++LD ++D N GAI+R+A DG Sbjct: 66 -NHQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P +++++ DA+ + + G + I S ++ + Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+I+G+E G+ P + A A L + G I++LNVS A V LY Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLYEAVRQR 243 >gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 258 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 18/273 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+ + H +++KK+Q+ ++ Q L G H V+ A+ + +I Sbjct: 2 EKLTSIHNQHV-------KNWKKLQT----KKYRRQTGTYLLDGWHLVNEAVQSGV-QIL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128 QL+ T LA +L + V V + + I QG+A P D Sbjct: 50 QLIGTSEQLAAHSDLNSLTNE--VYEVTEEVMQHITDT-VTPQGIAAVVPLPDAHKVPDM 106 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LD V DP N+G ++R+A A G++ + R + S + +S G+ H+ Sbjct: 107 ESLHGGWLFLDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQGSQFHLK 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L ++ + G + K ALI+G EG+G+ + Sbjct: 167 LYE-GDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQGMSDQLLSQ 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T+ ++ M G ++LNV+ +A + ++ + Sbjct: 226 TTANLYIPMRGQAESLNVAVSAGILMFQLNKNL 258 >gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3] gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans Sphe3] Length = 329 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 24/301 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGVHTV 57 + K ++ + +H AK K+ S P+ + G ++V Sbjct: 30 KGPTPKAEDRPYH--KAHKAKQLAERSAAKRNPGARSAGAAKSGPKGRATEEVVTGRNSV 87 Query: 58 SAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL P++ + + + + + P+ +D++ ++AVHQGL Sbjct: 88 VEALRAGIPAKALHVAIRIEMDDRVKESLKIAAERGIPLLETGKPELDRMT-EDAVHQGL 146 Query: 115 ALETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 L+ P + N+ L + LD + DP N+GAI+RS AFS G Sbjct: 147 VLQIPPYDYQDAYELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHG 206 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I +R S +A K+++GA +P R SNL +AL++ + G +GL D L Sbjct: 207 VIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLDGDGDVSLP 266 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + +++G+EGKGL +E + + + +++LN S A ++LY Sbjct: 267 DLTLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQR 326 Query: 281 A 281 A Sbjct: 327 A 327 >gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120] gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120] Length = 252 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ A P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISAE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L D + + G IG D K L K + +AL++G EG G+ P+ Q+ Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISPELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM 13855] Length = 253 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 16/243 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G V AL I +++ ++ A PV+ VP + + Sbjct: 9 LIGRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARL-RHESD 67 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155 A HQG+ TAP+ +DA+ + +L+V+D V DP N GA+LRSAV Sbjct: 68 GATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAV 127 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG+I R +A K+++G IP R +L L ++ G+ G Sbjct: 128 AAGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGT 187 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 188 AETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFE 247 Query: 276 TQN 278 Sbjct: 248 AAR 250 >gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] Length = 232 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 17/232 (7%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V L + K+ K + + + +T Sbjct: 4 IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASKRNIKIFYTDRRT-------- 55 Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+ + L+ + + +++VLD V DP N GAI+RSA F DG Sbjct: 56 ENSQGVVALVSEFDYYVDFTAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDG 115 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R S + + KS++GA+EH+ ++++N++D + K+ +G+ G +D + Sbjct: 116 IIIQDRNSVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYY 175 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 QE +K L+LG+EG G+R K +E + +H+ G I +LNVS A + L Sbjct: 176 QENYPEKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIIL 227 >gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] Length = 257 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 107/255 (41%), Gaps = 6/255 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ +KS+ ++ + G+ A P +I ++ ++ R + N Sbjct: 7 NAQVKELLQLQKKSKVRNERNIFLVEGIKMFFEA---PRNRIEKVFISETLFDRKKQELN 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPH 145 L V+ + + + QG+ + + LM+LD++ DP Sbjct: 64 L-DGLKVEILSDKVFSHVSDT-KTPQGILCIMRQKKTKLEEIFAQKPEHLMILDNLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A GII +K + +S G++ +P++ + +L + ++++ Sbjct: 122 NLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVEDLENTIEEVKKQ 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + K ++E A ++G EG GLR + E A + M G +++LN Sbjct: 182 DIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKIKMHGEVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + A+++ ++ Sbjct: 242 AIASSILMFEVCRQR 256 >gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 249 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 VVRQR 246 >gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] Length = 270 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 117/285 (41%), Gaps = 26/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114 ++ I ++ ++ A R L +K V P + + + + QG+ Sbjct: 47 IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 E + ++ ++N + ++V D + DP N+G ++R A AF D ++TTK + Sbjct: 107 LAECN-FVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G+L H+ +R + ++ + F + + + + + K +++G Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + A + M G ++LN + AA+V LY + Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270 >gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] Length = 270 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 117/285 (41%), Gaps = 26/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K H K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVP--PQTIDKIVGKEAVHQGL 114 + I ++ ++ A R L +K V P + + + + QG+ Sbjct: 47 IEYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGI 106 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + Sbjct: 107 LAECN-FVDKDINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 166 KTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIG 225 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 226 NESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270 >gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] Length = 253 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 16/255 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +KK+Q+ + + G H V AL + ++L + W+ + Sbjct: 13 KQWKKLQT----KKERENSGTYIVEGFHLVEEALKYKG-VVQEILVKEGVDLPSSWNMD- 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + E QG+ L+ + ++LD V DP N+ Sbjct: 67 --EVSVIALSEDAAKAVSATE-TSQGVFAVCQQNQIGDLEL--QGKTFLMLDEVQDPGNL 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A D I+ + + + + +SA G+ H+P I+ NL+ + ++ + Sbjct: 122 GTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGSHFHLPIIK-GNLSSWIDRLRTEEI 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ D ALILG EG G+ P ++ ++ + G ++LNV+ Sbjct: 181 PVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILDSTDQNLYVPIYGKSESLNVAI 240 Query: 268 AAAVALYITQNHFAK 282 AA + +Y H K Sbjct: 241 AAGILMY----HLKK 251 >gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] Length = 236 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +AL N +R+ +LLAT+N + V+ V + ++ ++ K A HQG+ Sbjct: 1 MSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60 Query: 115 ALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ +S Sbjct: 61 ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228 PSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ +++ K Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis HTCC2601] gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. HTCC2601] Length = 259 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ E ++L+G+H V AL NP R+ +L+ T NA A+L DA + Sbjct: 11 KEQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLA-DAVAEAGIAPEIH 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL LD V L++LD V+DPHN+GAIL Sbjct: 70 DPRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + +S E+ LAK+ASGALE PY+R NL D ++ + + G+ +G Sbjct: 130 RSAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLG 189 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +++ +EQ +++ +AL+LGAEG GLR KT+ T + + G +LNVSN Sbjct: 190 LDGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248 >gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067] gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171] Length = 252 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V A+ + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEAIRQDGL-VV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL +K +W L + V + + I ++ + QG+ P + + Sbjct: 50 ELLVSKGVSVPEEW---LKGNYDVFEISTE-ISHLISETMTEQGVFAVVT-TTEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D +I + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL D + + G IG D K L K D +ALI+G EG G+ + Q Sbjct: 164 IQ-ANLFDWVANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 252 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V A+ + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEAIRQDGL-VV 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL +K +W F + T I + + QG+ P + + Sbjct: 50 ELLVSKGVSVPEEWLKGNYDIFEIST----EISHFISETMTEQGVFAVVT-TTEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D +I + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL D + + G IG D K L K D +ALI+G EG G+ + Q Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 27/298 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ R ++ + + ++ TS+ ++L + G + V AL Sbjct: 20 KGPTPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEAL 78 Query: 62 NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P+ ++ + R H + +D+I + + HQG+ L+ Sbjct: 79 RCGVPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKA 137 Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157 P +L + + L + LD V DP N+GA++RSA AF Sbjct: 138 QPFQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAF 197 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL Sbjct: 198 GANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGD 257 Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E + D + ++LG+EG GL +E S+A + M ++++LN S AA + LY Sbjct: 258 ALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315 >gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] Length = 275 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 14/273 (5%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 +++ K++ +KS+ S+ G+ V P ++ L +++ Sbjct: 4 RKMITSTSNQRVKELSQIQKKSKIRSREGIFIAEGIRMVRE---TPHERLVGLYFSESFE 60 Query: 79 ARLDW---------DANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + D + KT + + V QG+ + Sbjct: 61 KKYGKEVLDVISGGDLKVREQIRKKTEILSDAVFSYVSDTKTPQGVLAVVHQMEYTLGQM 120 Query: 129 VRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + LM+LD++ DP N+G I R+A A GII ++ + +S GAL + Sbjct: 121 TEGAIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRM 180 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ + +L + + + ++ D K ++E A ++G EG GLR + + Sbjct: 181 PFVYVEDLRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQC 240 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + + M G +++LN + AA V ++ Sbjct: 241 ADTWIRIPMCGQVESLNAAVAATVLMFEVSRQR 273 >gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 249 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 259 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 118/274 (43%), Gaps = 20/274 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+K++ +++KK+Q+ + Q L G H V+ AL R + Sbjct: 3 EKLTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEALQAD-RGLH 50 Query: 70 QLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 +L+ TK LA D A V +V P + + + QG+ + A L A Sbjct: 51 ELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVADLPDLHQVA 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S + LD V DP N+G ++R+A A G++ + S + +S G+ H+ Sbjct: 106 TDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLA 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L + + G+ G + + K AL++G EG+G+ + + Sbjct: 166 LYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQ 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+ ++ M G ++LNV+ +A + ++ + Sbjct: 225 TTANLYIPMRGQAESLNVAVSAGILMFELADALN 258 >gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] Length = 330 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 27/298 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ R ++ + + ++ TS+ ++L + G + V AL Sbjct: 22 KGPTPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEAL 80 Query: 62 NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P+ ++ + R H + +D+I + + HQG+ L+ Sbjct: 81 RCGVPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKA 139 Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157 P +L + + L + LD V DP N+GA++RSA AF Sbjct: 140 QPFQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAF 199 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL Sbjct: 200 GANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGD 259 Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E + D + ++LG+EG GL +E S+A + M ++++LN S AA + LY Sbjct: 260 ALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 253 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 7/250 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + + + + + G H V AL + +I Q++ L W Sbjct: 8 QNALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEALKH-KDQIVQIIVRDGVDLPLLWAI 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + I + QG+ + D + + ++++D V DP Sbjct: 67 DEVVLVHVNEAVSKEIAE----TENSQGVFAHCK-QRQISEDEQFDWKKVLLVDAVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A D ++ K + + +SA G+ HIP +R +L + ++ + + Sbjct: 122 NIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVR-GDLMEWVENLQAD 180 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + G S D ++ +D ALI+G EG G+ P+ + + G ++LNV Sbjct: 181 GIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGINPQILAKTDQNIIIPILGGAESLNV 240 Query: 266 SNAAAVALYI 275 + A + LY Sbjct: 241 AVATGILLYA 250 >gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 333 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 40/295 (13%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63 + A+ R H+ YK+ Q+ N++ + +S+ ++L + G + V AL Sbjct: 25 TPKAEDRVYHKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCG 83 Query: 64 -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P+ ++ + R H + +D+I + + HQG+ ++ P Sbjct: 84 VPASTLYVAARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPF 142 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L + L + LD V DP N+GA++RSA AF + Sbjct: 143 QYSSLAELVERADKKSRAMEAANSASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL + Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALV 262 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + D + ++LG+EG GL +ET S+A + M ++++LN S AA + LY Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] Length = 264 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 3/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+ S K ++ + + GVH V A + + + ++ + Sbjct: 10 QNERVKQWASLLDK-KYRDRTGLFIIEGVHLVQEAFKSSAAVQCVVYNSERGIPHELEQL 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 Q + K G + + L RN+ L++VLD V DP Sbjct: 69 AREGGAEWVQATTQVMAKCTGTDTPPP-VFAVLEKLKRDDTALFRNNSLVVVLDGVRDPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA A D ++ K + +S G+L H+P I ++L + L + S Sbjct: 128 NVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIE-ADLAELLPEAQSK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + +G S + L++G E +GL + + M G ++LNV Sbjct: 187 GIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVRLAVDESVIIPMQGEAESLNV 246 Query: 266 SNAAAVALYITQNHF 280 + AA V LY Sbjct: 247 AMAATVLLYEAVRQR 261 >gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] Length = 255 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 25/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ KI + +KK+ + ++ + + G H V A Sbjct: 1 MEVIQSKQNPKI---------------KAWKKLAT----AKGRQKAGQYLIEGTHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + L+AT + L + P+ V P+ + + + QG+ Sbjct: 42 LKSGQ-PVRHLVATLDYD--LSQLPDQALSLPLLLVSPELLKDL-SETPTPQGIMA-IID 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L S LD + Q ++LD V DP N+G ++R+A A + DG+I K + + +++ Sbjct: 97 LPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRAS 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG 239 G+L H+ + + L +A + G + + K ++ N K+AL+LG EG+G Sbjct: 157 QGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNEGQG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A ++ MPG ++LNV+ A + ++ Q Sbjct: 217 VSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254 >gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] Length = 249 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + + I +L K + + P VP + ++++ GK Sbjct: 7 IFGLRPIIEAIESG-KTIDKLFVQKGLQGEIFSQLRKLIAQYEIPTSYVPVEKLNRLTGK 65 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P+ +++ V + L++LD V+D N GAI R+A D Sbjct: 66 --NHQGVYAFLSPIEFDSIENVLPQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II + S S +A K+++GAL +IP + +NL + + G S S L Sbjct: 124 AIIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKTVDYLQQSGIVLAAASEKSDTYL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+I+G+E G+ + + + L M G +LNVS A LY Sbjct: 184 YDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243 >gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 244 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ N ++I ++ K+A L D + VP + ++++ Sbjct: 7 IFGIRAIIEAI-NAKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSYVPVEKLNRLTPN 65 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG AP+ +L+ + L ++LD ++D N GAI+R+A D Sbjct: 66 --NHQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S + K+++GA+ ++P ++ ++ DA+ + G +T+ + ++ + Sbjct: 124 GIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKTENHI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N+ +A+I+G+E +G+ P + A L M G I++LNVS A LY Sbjct: 184 YDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQR 243 >gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] Length = 260 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 101/257 (39%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + QK++ G+ A P I ++ + L Sbjct: 6 SNGQIKNIIQLQQKTKARRDRGLFVAEGLKMFQEA---PDSWIEKVYIA-DRLYEEQEIQ 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV+ V + +I + L L P + + LLMVL+ + DP Sbjct: 62 KRLGSLPVEIVDDRIFRQISDTKTPQGILCLLRCPHYRLEKILEKENPLLMVLEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A DGI+ +K + + +S G++ +P++ I N+ +AL+ + Sbjct: 122 NVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIENMEEALRLLKKK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T K + E A +G EG GL + E A + M G +++LN Sbjct: 182 KVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIRIPMEGQVESLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 + AA + +Y + Sbjct: 242 AMAAGILMYEAGRQRRR 258 >gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 27/306 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++++ + + R ++ + + + TS ++L + G ++V AL Sbjct: 22 KGPTPKAEDRVYHKAYKAKKQAEKRQRSDPRLAARRRAAHFTSNSDDLVI-GRNSVLEAL 80 Query: 62 NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P+ ++ + R H + +D+I + HQG+ L+ Sbjct: 81 RVGVPASVLYVANRIEHDDRTREIVRLAGQHGLNLLEADRLEMDRIA-RSGNHQGVILKA 139 Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157 P +L + L + LD + DP N+GA++RSA AF Sbjct: 140 DPFQYSSLHELVERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAF 199 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +IGL Sbjct: 200 GVNGVILPERRSASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKERGYYSIGLDGGGS 259 Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + E + D + ++LG+EGKGL T+E ++A + + +++LN S AA +ALY T Sbjct: 260 KLVGETGFETDPLVVVLGSEGKGLSRLTREACDAIASIPITSAVESLNASVAAGIALYAT 319 Query: 277 QNHFAK 282 N K Sbjct: 320 VNARRK 325 >gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 254 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 116/275 (42%), Gaps = 24/275 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S +++ + +KK+ + + + + G H V AL N ++ Sbjct: 2 KRIESTQNALV-------KYWKKLATTR---KERERSGEFLVEGFHLVEEALKN-KNQVL 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128 Q++ + + W + V T + + QG+ P+L + Sbjct: 51 QIIVREGIDLPMLWPIDDIAIVEVSTAVAKEFAE----TETSQGVFAVCKQPVLVD--NV 104 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + ++++D V DP NIG ++R+A A D +I K + + ++A G+ HIP Sbjct: 105 MTTWRKVLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIP 164 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247 +R +L + + + G G + D + P A+I+G EG G++P+ Sbjct: 165 VVR-GDLAEWIDILQDQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAM 223 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G ++LNV+ A + LY FAK Sbjct: 224 TDQNMIIPLFGQAESLNVAVATGIVLY----GFAK 254 >gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 262 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 106/258 (41%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + + ++ ++ + G V A+ I + T+ +LD Sbjct: 6 SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIRAN-LDIEYFILTEIGYEKLDN 63 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + V + ++ E QG+ + + L+ + D V Sbjct: 64 YIDKDKMKKHKVFCITDTLFKELASTE-NPQGIIAIVK-MDNKNLNF--QGDFYLFCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A +GI+ +K + +S G+L ++P + ++ Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKS 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF I S +S K +E KI L +G EG G+ + + A + MPG + Sbjct: 180 LKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A ++ +Y Sbjct: 240 SLNVAIATSIIIYEKVRQ 257 >gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] Length = 328 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 21/284 (7%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNN--PSRKIFQL-L 72 H A + + + S N+K + + + + G + V AL P++ ++ + Sbjct: 44 HKAYKMKRAAERRAATSTNRKFQTRLGGKRVSDELVTGRNAVLEALRTNIPAKHLYVMSR 103 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127 + R P+ +P +D++ AVHQG+A++ P P LD Sbjct: 104 IEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPYQYPDATDLVLD 162 Query: 128 A--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +++ L + LD + DP N+GAI+RS AFS DG+I +R S + +A K+ Sbjct: 163 VMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238 ++GA IP +NLT LQ+ G IGL L ++ ++ + +++G+EGK Sbjct: 223 SAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGK 282 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GL ET + + + +++LN + A + LY H A+ Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402] Length = 258 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 24/252 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99 + G H + L KI + + + + +A ++ Q Sbjct: 4 IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKQDNQ 63 Query: 100 TIDKIVGKE----AVHQGLALETAPLLSP---TLDAV------RNSQLLMVLDHVNDPHN 146 +D I H+G+ L T ++D ++S +++LD V DPHN Sbjct: 64 FLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAKLAEKDSGFVVILDSVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+I+RSA F DGII + S +++K ++GAL +P++ ++NL ++++ G Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + K L K LI+G+EG+G+ +ET + + G + +LNVS Sbjct: 184 FWIYGADAVGKA-LPDLTFPKKTVLIMGSEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242 Query: 267 NAAAVALYITQN 278 AA + LY Sbjct: 243 VAAGILLYEISR 254 >gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola ATCC 35405] Length = 258 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 24/252 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99 + G H + L KI + + + + +A ++ Q Sbjct: 4 IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKKDNQ 63 Query: 100 TIDKIVGKE----AVHQGLALETAPLLSP---TLDAV------RNSQLLMVLDHVNDPHN 146 +D + H+G+ L T ++D + S +++LD V DPHN Sbjct: 64 FLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKLAEKGSAFVVILDSVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+I+RSA F DGII + S +++K ++GAL +P++ ++NL ++++ G Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + K L K LI+G EG+G+ +ET + + G + +LNVS Sbjct: 184 FWIYGADAGGKA-LPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242 Query: 267 NAAAVALYITQN 278 AA + LY Sbjct: 243 VAAGILLYEISR 254 >gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84 Query: 65 -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +++ R + + + +D+I + HQG+ L+ P Sbjct: 85 VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L+ + + L + LD V DP N+GA++RSA AF + Sbjct: 144 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL K + Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 263 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E ++D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY N Sbjct: 264 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 323 Query: 280 FAK 282 K Sbjct: 324 RRK 326 >gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 333 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 28 TPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 87 Query: 65 -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +++ R + + + +D+I + HQG+ L+ P Sbjct: 88 VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 146 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L+ + + L + LD V DP N+GA++RSA AF + Sbjct: 147 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 206 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL K + Sbjct: 207 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 266 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E ++D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY N Sbjct: 267 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 326 Query: 280 FAK 282 K Sbjct: 327 RRK 329 >gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + NQK++ + G A P I ++ ++ AL+ Sbjct: 6 NNGQVKNIIQLNQKTKARREQGLFVAEGRKMFGEA---PRDWISKVYVSE-ALSGDAELM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDP 144 P + V ++ + QG+ D + + L+M+L+ + DP Sbjct: 62 AQVEKLPYEIVTDSVFRQMSDTQ-TPQGIMTVLKKPSYIMEDILGGENPLVMILEDLQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G ILR+ G++ TK + + +S G++ +P++ + ++ Q++ Sbjct: 121 GNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVESVVSLAQELKD 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +T K +QE A ++G EGKGL + ++A + + M G +++LN Sbjct: 181 RNIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIRIPMCGKVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 + A+ + +Y Sbjct: 241 AAMASGILMYEAARQR 256 >gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 246 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 34/280 (12%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ K+EK+ S K H + + + + G+H + AL Sbjct: 1 MITSIKNEKVKSWKKLH-------------------RRKERLKTNTFLIDGIHLIQEALK 41 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + I +L+ + N PV V + +I + QG+ + Sbjct: 42 SNW-VIQELIVVEG-----YELPNDAKDVPVAYVSENVLKEI-SQTQTPQGVIAVVEMNI 94 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + ++ L+++LD + DP N+G I+R+A A D ++ + + ++ G Sbjct: 95 PKVQE---DNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQG 151 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ HIP + L + + + GF + + + ++K+ LILG EG G+ P Sbjct: 152 SIFHIPIYTAT-LEQEIHMLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A ++ + G ++LNV AA + +Y H K Sbjct: 211 SLLNKANQRINIPIYGKAESLNVGIAAGILMY----HLKK 246 >gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191] gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191] Length = 249 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 16/245 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDKI 104 ++GVH V+ + N R++ QL N + A + + + +T+D + Sbjct: 6 DIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTMDAL 65 Query: 105 VGKEAVHQGLALETAPL----LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ HQG+A P+ L +D R L + +D + DP N+G+I+RSA Sbjct: 66 T-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAACLG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II R + + + K ASGA E + + ++NL AL + GF G + Sbjct: 125 FSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANLATALLDLKDEGFWIYGADMGGQS 184 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQ 277 + + + L++G+EG G+R KT E + + PG + +LN +NAA++ ++ Sbjct: 185 IV-KTDYSFPAVLVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMFDM- 242 Query: 278 NHFAK 282 FAK Sbjct: 243 --FAK 245 >gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56 Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D ++ L++VLD + DP N GAI+RSA F D Sbjct: 57 -ENSQGVAVYISNYDYYKDFDEAYEELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVDISKVTNLSDTINKLKKLDYWVYGAAGEANISY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E ++K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYSNKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens TC1] gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter aurescens TC1] Length = 330 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 34/297 (11%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTS----------------QPENLFLYGVHTVSAAL 61 + A+ R H+ YK Q + + + + G ++V AL Sbjct: 33 TPKAEERTYHKAYKNKQLAERSAAKRGSGTRPGGAGARSGPKGRATEELVTGRNSVVEAL 92 Query: 62 NN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P++ + + + + + P+ +D++ ++AVHQGL L+ Sbjct: 93 RAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKVELDRMT-EDAVHQGLVLQI 151 Query: 119 APLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 P + N+ + + LD + DP N+GAI+RS AFS G+I Sbjct: 152 PPYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRSVSAFSGHGVIVP 211 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEI 224 +R S +A K+++GA +P R +NL +AL++ + G +GL D L + + Sbjct: 212 ERRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLDGDGDVSLPDLTV 271 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL +E + + + +++LN S A ++LY A Sbjct: 272 ATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRA 328 >gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a] gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a] Length = 348 Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 11/257 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHP 90 QS R + + G + V AL P+ ++ + Sbjct: 91 QSGQGGPRTRRSEADELVVGRNAVVEALRAGVPASNLYVAGGLDFDERLADARRLAARAG 150 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDP 144 V V +D++ G A HQGLAL P L++ LD V DP Sbjct: 151 IAVVDVARPDLDRMCGT-APHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDP 209 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RSA AF G++ +R + +A K+++GA +P R +NL L Sbjct: 210 RNLGAVVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAE 269 Query: 205 WGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +GL++D+ +++ E+ D + L++G+EG+GL ++ + M G +++L Sbjct: 270 AGLFVVGLAADADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESL 329 Query: 264 NVSNAAAVALYITQNHF 280 N AA +AL Sbjct: 330 NAGVAAGIALAEIARRR 346 >gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 272 Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 5/269 (1%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +++ Y + K+ + + ++ + G+H V AL++ + + + Sbjct: 1 MQNPTYEIRSIRNPKVKEWAGLLDR-KGRNRQGKFLIEGIHLVEEALHSNAPVQTIVYSL 59 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQ 133 + + H + V + K QG+ L Sbjct: 60 EKEFPHELYKKFSSHADWI-GVSRAVLQK-CSDTETPQGIFAVVRKSEQSLELITAEEWD 117 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V+D V DP N+G I+RSA A I+ + + +S G+L H+P I + Sbjct: 118 LVVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIE-A 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L D L K G Q + ++K + +I+G EGKG + E AT Sbjct: 177 DLADLLPKAVKAGIQVLCTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMI 236 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++LNV+ AA V L+ K Sbjct: 237 IPMKGHAESLNVAMAATVLLFEASRQRMK 265 >gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 252 Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++K+ + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L I Q+ +N LA+L V V + + E+ QGL E Sbjct: 40 LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSES-PQGLIAE 97 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 A + +D ++ ++L++V DP N+G ++R+A A +I + S + Sbjct: 98 VAKI-EEVIDF--SASKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+ R+ N + + + + + + ++ AL++G EG Sbjct: 155 RSMQGSNFHLAIARM-NEEECFAALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILIF 250 >gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 233 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 10/232 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + L + G ++V AL N I ++L L + N FPV+ V D++ Sbjct: 2 KQLIMCGKNSVLDALQNNW-PIQKVLLLHENNKHLFKNVN----FPVEVVRRDKFDELT- 55 Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG + L+++ N +L++VLDH+ DPHN+GA++RSA A II Sbjct: 56 -NENHQGFIALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIIL 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 + S ++ + K +SG I +IR+++++ + + + GF + D + K Q Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQI 174 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L++G EG G+ T ++ G +++LNVS A + L+ Sbjct: 175 NYPYKSVLVVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFE 226 >gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] Length = 333 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 24/298 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGV 54 + K ++ + +H K++ S +R E + G Sbjct: 38 TPKAEDRPYHA--AHKRKVQAEKASGTAQTSGRPSARAARGAEGKRGGRTSSTHEVVAGR 95 Query: 55 HTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVH 111 ++V AL L A A R ++ P+ V +D++ AVH Sbjct: 96 NSVLEALRAGIPVSTVYLAARLEADDRTREIVSIAADAGHPLLEVGRAELDRLTD-GAVH 154 Query: 112 QGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+AL+ P D + ++ L++ LD + DP N+GA+LRSA AF G++ Sbjct: 155 QGVALQVPPYEYLDPDDLLDTAESSQTVPLVVALDGITDPRNLGAVLRSAGAFGAHGVLV 214 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +R + +A K ++GA +P R +NLT ALQ G +GL + PL Sbjct: 215 PERRAAGVTASAWKVSAGAAARVPVARATNLTRALQDYRRAGVFVVGLDAGGDVPLADLP 274 Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 D + L++G+EGKGL +E ++ + + +++LN AA +ALY A Sbjct: 275 FAADPLVLVVGSEGKGLSRLVREQCDAIVSIPIASAVESLNAGVAAGIALYEVARQRA 332 >gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] Length = 237 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + V A+ + ++ K L + + +P +D+ V + Sbjct: 1 MLIYGRNPVLEAIKEG--RAVRVWVAKGVENWLIRELE-GLGADYELLPRIELDQKV-RT 56 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQGL E A L +A + LL++LD V DP N GAI+R+AVA G Sbjct: 57 TQHQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I+ +R S S ++ K+++G +P +++ NL ++++ G G S ++K L Sbjct: 117 VISEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLT 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A+++G+EG+G+R ++ A + + ++LN S A A+ LY + Sbjct: 177 MLDYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232 >gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] Length = 254 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSNAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L D + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 328 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 21/284 (7%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNN--PSRKIFQL-L 72 H A + + + N+K + + + + G + V AL P++ ++ + Sbjct: 44 HKAYKMKRAAERRAATGTNRKFQTRLGGKRMSDELVTGRNAVLEALRTNIPAKHLYVMSR 103 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127 + R P+ +P +D++ AVHQG+A++ P P LD Sbjct: 104 IEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPYQYPDATDLVLD 162 Query: 128 A--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +++ L + LD + DP N+GAI+RS AFS DG+I +R S + +A K+ Sbjct: 163 VMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238 ++GA IP +NLT LQ+ G IGL L ++ ++ + +++G+EGK Sbjct: 223 SAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGK 282 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GL ET + + + +++LN + A + LY H A+ Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 328 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 21/283 (7%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNN--PSRKIFQL-L 72 H A + + + N+K + + + + G + V AL PS+ ++ + Sbjct: 44 HKAYKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTEIPSKHLYIMSR 103 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127 + R P+ +P +D++ +VHQG+A++ P P LD Sbjct: 104 VEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPYKYPDATDLVLD 162 Query: 128 AVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L + LD + DP N+GAI+RS AFS DG+I +R S + +A K+ Sbjct: 163 TMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238 ++GA IP +NLT +Q+ G IGL L E+ N+ + +++G+EGK Sbjct: 223 SAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGK 282 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 GL E + + + +++LN + A + LY A Sbjct: 283 GLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325 >gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 247 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 E ++G + A+ +KI ++L K ++L + ++ VP + +D Sbjct: 2 KEFEMIFGKRAIIEAIQ-IGKKIDKILICKGLQSKLSHELFNIIKETDILIRRVPREKLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ HQGL + + L+++ L+++LD + D HN GAI RS Sbjct: 61 RLT--RRNHQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVHNFGAIARSCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + I+ S S +A K ++GAL + R SN+ +A++ + G++ + Sbjct: 119 CAGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLCGYKVYAATEK 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + A+++G+E KG+ P + + G I +LNVS A AV LY Sbjct: 179 ATTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNVSAATAVLLYE 238 Query: 276 TQNHF 280 Sbjct: 239 VLRQR 243 >gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] Length = 244 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 17/232 (7%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V+ L + KI K + + + +T Sbjct: 16 IIGINPVTEVLKSDKNIEKIEVYKGIKKDTIKEILNLASKRNIKIFYTDRRT-------- 67 Query: 109 AVHQGLALETAPL-----LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+ + L+ + V ++ ++++LD + DP N GAI+RSA F DG Sbjct: 68 ENSQGVVALVSEFDYYLELTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDG 127 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ R + + + KS++GA+EH+ I+++N++D + K +G++ G +D + Sbjct: 128 IVIQDRNNVKVTETVVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYY 187 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E K+ L+LG+EG G+R K +E +H+ G +LNVS A + L Sbjct: 188 EESYPKKVCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIIL 239 >gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873] gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873] Length = 260 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 10/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 +++ K ++ ++K ++ +Q + G V AL + + +L ++N+ + + Sbjct: 6 SKDNSLIKDIRKLSKK-KYRTQEGKFLVEGFRFVQEALKSTFEVPY-VLISENSNEKCES 63 Query: 83 --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V V + ++ QG+ + ++ +++D Sbjct: 64 FNIYDLIQENTKVYLVRDDILKELCDTN-NPQGILAVV---NNKVMEIEDQKGFYVLVDR 119 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+RSA A G+ITTK + +S G++ IP I +N L+ Sbjct: 120 IQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIIEDNNF-QILK 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + S GF+ + S D++ K + +G EG G+ E + MPG Sbjct: 179 ILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVKIPMPGDA 238 Query: 261 KALNVSNAAAVALYITQNH 279 ++LN AA++ +Y Sbjct: 239 ESLNAGVAASIMMYEVVRQ 257 >gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192] gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192] Length = 241 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 48 NLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++++ G V L +P ++ L T R + Q + + V Sbjct: 3 SVYITGKRAVETYLVDPGVRERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRYV 62 Query: 106 GKEAVHQGLALET-APLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G H+G ALE TLD + + LL+ LDH+ DPHN+GAILRSA F Sbjct: 63 GS---HRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVGAILRSADQFGAL 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R + ++A ++KS+SGA +P + +NL AL + GF G + +P+ Sbjct: 120 GVILPERRAVKDAATISKSSSGADAFVPVVVETNLRRALLHVKEAGFWVYGADMEG-QPV 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++ L+LGAEGKGL +E + + G + + NVS AA + +Y + Sbjct: 179 HEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVAAGILMYEVRRQ 237 >gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 259 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 118/274 (43%), Gaps = 20/274 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+K++ +++KK+Q+ + Q L G H V+ AL R + Sbjct: 3 EKLTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEALQAD-RGLH 50 Query: 70 QLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 +L+ TK LA D A V +V P + + + QG+ + A L A Sbjct: 51 ELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVADLPDLHQVA 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S + LD V +P N+G ++R+A A G++ + S + +S G+ H+ Sbjct: 106 TDLSGAWLFLDRVQNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLA 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L + + G+ G + + K AL++G EG+G+ + + Sbjct: 166 LYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQ 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+ ++ M G ++LNV+ +A + ++ + Sbjct: 225 TTANLYIPMRGQAESLNVAVSAGILMFELADALN 258 >gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO] Length = 254 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L D + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 235 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + GV+ V L N + I +L + N +L+ L + + Sbjct: 4 IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKLASERNIKIFYTDKKI------- 56 Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + L+ + ++++LD + DP N GA++RSA F Sbjct: 57 -ENSQGVAVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII +R + + + K+++GA+E++ ++++N+++AL K+ + G + K Sbjct: 116 GIIIPERNAVRINETVVKTSTGAIEYVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E + AL+LG+EG G+R K +E + + M G I +LNVS A + L Sbjct: 176 SKEKYPSRTALVLGSEGNGIRKKVKENCDVLIKIPMHGKINSLNVSVAGGIIL 228 >gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 251 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 13/248 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTV 96 S++ S+ + G + V L R + +++ ++ A + + +V Sbjct: 3 SKNNSRSSENVVCGRNPVLELLKAARRTVNKIMVSRTARGVVISEIINLAKQKGIALHSV 62 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAI 150 PP+ +DK QG+ E +P+ L + LL++LD + DPHN+GAI Sbjct: 63 PPEKLDK---FSESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLGAI 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+ VAF DG+I K + + ++KS++GA+EHI R+ N A+ + F + Sbjct: 120 IRNCVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFWIV 179 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + + + LE+ +A+I+G+EG GL T++ + + + II +LN S A+A Sbjct: 180 G-AENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASA 238 Query: 271 VALYITQN 278 V LY Sbjct: 239 VILYEIAK 246 >gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] Length = 247 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + +YG+H ++ +L + S I ++ K A + PV VP + +++ Sbjct: 3 KQKLIYGIHALTESLASHS-DIDKIYMKKGAATGELLEIKRTARAQGIPVMEVPAERLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ +P+ L+++ +++LD V D N GAI R+ Sbjct: 62 FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239 Query: 277 QNH 279 Sbjct: 240 VRQ 242 >gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56 Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D ++ L+++LD + DP N GAI+RSA F D Sbjct: 57 -ENSQGVAVYISNYDYYKDFDEAYEELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANISY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E ++K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYSNKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM] Length = 264 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 11/259 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLP 88 +KM+ + + + F++G+ V A+ K+F + ++ Sbjct: 5 QKMKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAK 64 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141 H VP + +++ K HQG+ + + +++AV + L++LD + Sbjct: 65 HKIRPNYVPIEKLNRFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N GAI R+A D II ++ + ++ K+++GAL ++ + NL + Sbjct: 123 TDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDF 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + ++K + AL++G E KG+ + + L + G + Sbjct: 183 LQQSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQ 242 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS A LY Sbjct: 243 SLNVSVACGAILYEVVRQR 261 >gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] Length = 270 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 117/285 (41%), Gaps = 26/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I +K + K R R + + G+ V A Sbjct: 6 VEFISSRENECIKRVKKLNDKKYREEFRSF-------------------IIEGLKLVKEA 46 Query: 61 LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114 +N I ++ ++ A R L +K V P + + + + QG+ Sbjct: 47 INYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 E + ++ ++N + ++V D + DP N+G ++R A AF D ++TTK + Sbjct: 107 LAECN-FVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G+L H+ +R + ++ + F + + + + + K +++G Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + A + M G ++LN + AA++ LY + Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] Length = 339 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 12/254 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96 R + E + G ++V AL P++ ++ + R P+ Sbjct: 84 RRTPGKGEAEQVAGRNSVVEALRAHVPAKALYIAQYIDSDDRVRESMRLATELGVPLLEA 143 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149 P +D++ +HQG+ L P D + ++ L LD V DP N+GA Sbjct: 144 PRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPLFAALDGVTDPRNLGA 202 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RS AF G+I +R + +A K+A+GA +P R NLT AL+ G Sbjct: 203 VMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGNLTRALEAYKKQGVMV 262 Query: 210 IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 GL++D PL + EI + + L++G+EGKG+ E + + ++LN A Sbjct: 263 AGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVSIPIASTTESLNAGVA 322 Query: 269 AAVALYITQNHFAK 282 A +ALY A+ Sbjct: 323 AGIALYEVNRRRAE 336 >gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] Length = 259 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + N L + Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEK 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L N+ + V + I E QG+ + LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSISNTE-NPQGIVSVINYFKTEKLDL--ENGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENL-ETVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ D + + +G EG G+ + + MPG Sbjct: 178 SLQRNGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 226 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 112/218 (51%), Gaps = 5/218 (2%) Query: 59 AALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L N + K++ + + + + + + +D++ + A HQG+ Sbjct: 1 EILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDEL-SEGANHQGVVAL 59 Query: 118 TAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + TL+ + + + +++LD + DPHN+GAI RSA AF GII K S + V Sbjct: 60 VSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDV 119 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + K+++GA++++ + +NL+++++K+ G+ G + ++ + KI L++G Sbjct: 120 VYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGADMEGEE-YFKSDLKGKIVLVVGN 178 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EGKGL P ++ + + M G I +LN S AA++ + Sbjct: 179 EGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILM 216 >gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 11/279 (3%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PS 65 + E+ A R D + R Q E+ + G ++V AL P+ Sbjct: 68 RDERAERSPAPRSAAPRARATDRPAGADAPRARRAKQQDESEVVTGRNSVVEALRAKIPA 127 Query: 66 RKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++ + + + PV V +D+I G +AVHQGLAL+ P Sbjct: 128 TALYIASRIEYDDRVKEVLSLATGRGIPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYA 187 Query: 125 TLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + LL+ LD + DP N+GAI+RS AF G+I +R S +A Sbjct: 188 DAIELLDKTISRGQLPLLVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAW 247 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAE 236 K+++GA P SNLT L+ + G +GL L + D I +++G+E Sbjct: 248 KTSAGAAARTPVAMASNLTQTLKALKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSE 307 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 GKGL ET ++ + + ++LN AA+V LY Sbjct: 308 GKGLSRLVTETCDTVVSIPIGASTESLNAGIAASVTLYE 346 >gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 234 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +K+ +LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKVVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03] Length = 245 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + L+R HR + + G H A Sbjct: 1 MEVIQSKQNASIKTARKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R + + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLL--LEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R + + ++ + + + +K AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] Length = 245 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + K L+R HR + + G H A Sbjct: 1 MEVIQSKQNASIKTAKKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R + + VK V P+ + ++ + QG+ E A Sbjct: 40 -KVSGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLL--LEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R + + ++ + + + +K AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] Length = 233 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 17/232 (7%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V L + K+ K + + + +T Sbjct: 4 IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASRRNIKIFYTDRRT-------- 55 Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+ + L+ + + +++VLD V DP N GAI+RSA F DG Sbjct: 56 ENSQGVVALVSEFDYYVDFSAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDG 115 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R S + + KS++GA+EH+ ++++N++D + K+ +G+ G +D + Sbjct: 116 IIIQDRNSVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYY 175 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +K L+LG+EG G+R K +E + +H+ G I +LNVS A + L Sbjct: 176 EENYPEKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIIL 227 >gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 252 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ + QG+ A P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ K + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L D + + G IG D K L K D +AL++G EG G+ P+ Q+ Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYITIYGDSESLNVAVAAGILLYGLRK 252 >gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp. Re1] Length = 250 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G ++V AL R I ++ K L R + P+ + + K Sbjct: 6 IEGRNSVWEALQ-AGRPINKIYIKKGEYHGLIRDIIEKARNTGVPISEIDEAAFLSMA-K 63 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ + A +++ + +++L+ + DP N+G+I+R+A Sbjct: 64 TAGHQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDPQNLGSIIRTADGMGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K + + +AK +SGA+E++ R++N+ + ++ G IG ++ K Sbjct: 124 GIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKKEGLWIIGADAEGKN-Y 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++G E KGL ++ + + + G I +LN + AA++ Y Sbjct: 183 FEVDLTGSIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQR 242 >gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] Length = 340 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137 V+ V + ++ G +VHQG+AL+TA + L+A+ LL+ Sbjct: 13 EAKASGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLA 71 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DPHN+GA++RSA A G++ +R S + AK A+GA+EH+P R+ NL Sbjct: 72 LDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNR 131 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +L+K+ G++ IGL+++ L + + L+ G+E +GL T+ + + + Sbjct: 132 SLEKLKDSGYRVIGLAAEGDVTLMDVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLR 191 Query: 258 GIIKALNVSNAAAVALYITQNH 279 GI +LN S A A+ +Y Sbjct: 192 GITPSLNASVATAMCVYEVARR 213 >gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 335 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 9/222 (4%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + Q + + A + P +D++ HQGL L+ P + Sbjct: 115 VQQFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPE 173 Query: 128 AVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L++ LD V DP N+GA++RS AF G++ +R + +A K++ Sbjct: 174 DLADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTS 233 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKG 239 +G P R +NLT AL++ G +GL++D + L + + + +++G+EGKG Sbjct: 234 AGTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDLDALEGPVVIVVGSEGKG 293 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L ET + MPG ++LN AA + LY Sbjct: 294 LSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRRG 335 >gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262] gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262] gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378] Length = 252 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ QG+ A + P + + Sbjct: 50 ELLISSGVSVPEEW---LKGDYDVFEISSE-ISHLISDTMTEQGVFAVVA-ISEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L + + + G IG D K L K + +AL++G EG G+ + Q+ Sbjct: 164 IQ-ADLFEWVANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 234 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D + L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E DK+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPDKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] Length = 252 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 13/251 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++Y+K+Q+ S+ + E + G H V A+ + I +L+ +++ + + Sbjct: 13 KNYQKLQT----SKGRKKSEAYMIEGEHLVEEAIQSNI-SIQRLVVSEDTIQ---FYEKW 64 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 +P V + +K+ + QG+ PL L V + L+ D V DP N+ Sbjct: 65 TKSYPTMFVSKEVFEKLSMTQTN-QGILAIV-PLEKKPLVEVPQGRYLLA-DAVQDPGNL 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A D ++ + + + +S G+ H+ NL D K+ Sbjct: 122 GTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVAI-YHENLMDVYGKLKENDI 180 Query: 208 QTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + K + D +A+++G EG G+R + E+A + + M G ++LNV+ Sbjct: 181 PIAVTALHRDAKDFKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESLNVA 240 Query: 267 NAAAVALYITQ 277 A V +Y T+ Sbjct: 241 IATGVLMYQTR 251 >gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 253 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-VLGTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ I + + Q + + P+ P + + +VLD++ DP Sbjct: 66 KLKDDKVIQITD--AISQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ + +A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 181 GLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] Length = 251 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 33/281 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+E + + +KK+ + + Q + + G H V A Sbjct: 1 MKHISSPKNEIV---------------KQWKKLLT----KKGRLQTKRFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I +L+ ++ W N + +++ K++ + QG+ Sbjct: 42 VRAG--IIKELIVREDVQVPGSWKKNAADLITI----DESVAKVLSETETTQGIFAVCEM 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++LD + DP N+G ++R+A A DG+I ++ + ++ Sbjct: 96 KQQT---ERLERGRYLLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P I + +L +A+Q +H G +G + +P I LI+G E +G+ Sbjct: 153 QGSIFHLPVIMM-SLEEAIQDLHELGVFILGTALRGAQPYTDVENLGAIGLIIGNEAQGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 P+ + A++ + G ++LN + AA + LY HFA Sbjct: 212 APELLDQCDGRAYIPIRGKAESLNAAVAAGILLY----HFA 248 >gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 248 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 120/268 (44%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++++ + G H V AL +P + Sbjct: 2 KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-IVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++L ++L + + E Q A+ P + + Sbjct: 50 EILVKDET----KIPSDLETGIQCYMLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP Sbjct: 101 ATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPV 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R NL + ++ + G + G + + P ++ +++ ALI+G EG G+ E Sbjct: 161 VR-RNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAA+ +Y + Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii ATCC 33406] Length = 268 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 13/265 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWD 84 R+Y K + + + + ++G+ V AL I ++L +N A+ + ++ Sbjct: 3 RNYPKKRFSSSYDENKPANDKDMIFGIRPVIEALEAGKE-IDKILIQRNIEQAVVQELFE 61 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137 PV VP + +D++ K HQG+ + + +LD + + LL++ Sbjct: 62 LANRVKVPVIKVPVEKLDRVTRK--NHQGVICYLSAINFASLDNIVSACFESGKNPLLVM 119 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V D N GA+ RSA D +I R + ++ K+++GAL HIP R+ +L D Sbjct: 120 LDRVTDVRNFGAVARSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLID 179 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++ + G + I S + + E D +++G+E G+ A + + M Sbjct: 180 TVKYLKQCGLRIIACSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVTIPMS 239 Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282 G I +LNVS A + L K Sbjct: 240 GHINSLNVSVATGMILSEVTRQRLK 264 >gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] Length = 264 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 106/263 (40%), Gaps = 13/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +K + + + G+ P ++ ++ A++ R Sbjct: 6 SNAKVKRLVNLKKKKKLRDEEGVFLVEGIRMFREV---PKDRLVEVYASEEFWNR--ERK 60 Query: 86 NLPHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMV 137 + V P+ + + V QG+ + V+ LL+V Sbjct: 61 AVEQVLAGTKVQPEILADFVFEYVSDTKTPQGILCLVRQKQYSITEIVKEKGGELPLLLV 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+G I+R+A GI+ ++ + + +S GA +P+ + +L + Sbjct: 121 LDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVDDLAE 180 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +++M G T + K ++E A ++G EG GLR + + A + M Sbjct: 181 EVKQMKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIRIPMK 240 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +++LN + A A+ + Sbjct: 241 GQVESLNAAVATAILTFEAARQR 263 >gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 15/277 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + RR+++ + + + R E+ ++G+H + AL +I +++A K+ Sbjct: 16 KADRGAPRRDNKSAGQDKKAATQDRRIRFSED-LIWGIHPIVEALKYEPNRISEIIAQKD 74 Query: 77 AL-ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALET--------APLLSPT 125 A+ D L VK + ++ A HQG+ + A L Sbjct: 75 RRGAKFDEIVELARAAKVKVTFIDSISLQGDGAASARHQGVIAKVTQADLMDFADFLQKF 134 Query: 126 LDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 DAV ++V D + DPHN+GAI+RSA+A G++ T+ S AKS++GA Sbjct: 135 KDAVDRGEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGA 194 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRP 242 + H+ +++NL +L ++ G G D+ L N +++G+EG G+RP Sbjct: 195 ISHMDICQVTNLVKSLAELKKVGAWVFGAIKDADAVSLFDADLNVPACIVVGSEGTGIRP 254 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G + +LN S AAAV L+ Sbjct: 255 LVRRECDIQLSIPMVGELDSLNSSVAAAVILFEAMRQ 291 >gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp. subtilis str. 168] gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp. subtilis str. SMY] gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis] gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++++ + G H V AL +P + Sbjct: 2 KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-IVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++L D L + + E Q A+ P + + Sbjct: 50 EILVKDETRIPSD----LETGIQCYMLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP Sbjct: 101 ATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPV 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R NL + ++ + G + G + + P ++ +++ ALI+G EG G+ E Sbjct: 161 VR-RNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAA+ +Y + Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] Length = 254 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] Length = 259 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYFVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ D + + +G EG G+ + + + MPG Sbjct: 178 SLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023] Length = 252 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S+K+ + +KK+Q+ + + + G H V AL + Sbjct: 2 EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +LL + +W L + V + + I ++ QG+ A + P + + Sbjct: 50 ELLVSSGVSVPEEW---LKGDYDVFEISSE-ISHLISDTMTEQGVFAVVA-ISEPDMMLL 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +LL+V D V DP N+G ++R+A A D ++ + + + + +S G+ HIP Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ ++L + + + G IG D K L K + +AL++G EG G+ + Q+ Sbjct: 164 IQ-ADLFEWVGNLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + LY + Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1] gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1] Length = 271 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 110/260 (42%), Gaps = 4/260 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + K ++ + + + + G+ V+ ++ + F +++ + + + Sbjct: 6 SKKQQKLVKDLIKSKKARMKNRCFIVEGLKNVAESIKSNYEVRFVVISDDFFKSNIGFIK 65 Query: 86 NLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 L + V +++ QG+ + D + + L++ LD + Sbjct: 66 ILSKQVCPNRLYQVRDNLFNELTDT-VTPQGIMAVINFKDTNIEDVQKENFLMIALDRIQ 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A D I+ ++ + + +SA G+L H+P I+ +L L ++ Sbjct: 125 DPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDLIKTLIEL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + + +KKP +++G+E +G+ + + + + MPG ++ Sbjct: 185 KEKGGKVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVRISDELVKIPMPGSAES 244 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A + ++ K Sbjct: 245 LNVAIAHGIMVFEAVKQRIK 264 >gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13] Length = 252 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 7/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 Q + G H V AL + +++ +++ +WD N H + VP + Sbjct: 23 EREQSGTFIIEGFHLVEEALKVD-NLVEEIIISEDRSIPSEWDLN--HVELIYAVP-NVL 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +I E QG+A + L ++ +Q +++LD+V DP N+G ++R+A A D Sbjct: 79 KEISETE-TPQGVAAICRIPVQHDL-TLQPNQKILLLDNVQDPGNVGTMIRTADAAGMDM 136 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + S+ + +S G++ H+P R +L +++ G S + P + Sbjct: 137 VILGEGCADLYSSKVIRSTQGSIFHLPIAR-GDLKTYIKQCKELQTPVYGTSLQNGVPFQ 195 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ ALILG EGKG+ + E ++ + G ++LNV AA + +Y + Sbjct: 196 EVQSSNTFALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251 >gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] Length = 300 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 25/257 (9%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105 F+ G H V AL+ LA N RL D ++TVP +DK Sbjct: 3 EFIEGKHPVWEALSTHVPITRIFLADGNKHDRLLQDILHMAARQHIVMETVPRAQLDKR- 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQ-----------------LLMVLDHVNDPHN 146 K HQG+ + P +LD + R + L++VLDH+ D N Sbjct: 62 SKRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDAGN 121 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA + GII + S +A KS++GA+ HIP +++NL AL ++ + G Sbjct: 122 LGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKNEG 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G S ++ + + L++G E GL TQE L G++ +LNV+ Sbjct: 182 YWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLNVA 241 Query: 267 NAAAVALYI--TQNHFA 281 +A V +Y QN + Sbjct: 242 QSATVCMYEWLRQNRLS 258 >gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] Length = 243 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 10/235 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+HTV L + + +L N ++ PV+TV I+ ++ Sbjct: 9 GIHTVQQLLADGH--VLRLYVADNKKSKNLTALVGEAQARGVPVETVALYEIEMML-PGV 65 Query: 110 VHQGLAL--ETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 HQG+A E + DA+ LL+VLD + DPHN+GA LRSA A ++ Sbjct: 66 RHQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIP 125 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + V+ K A GA E +P R+SNL +++M G +G + + + L Sbjct: 126 NSRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQGIWVVGGAGGAAQSLYATDL 185 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+I+G EG+G+R +E + + M +++LNVS A V L+ + Sbjct: 186 TVPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQR 240 >gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] Length = 258 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 21/251 (8%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVG 106 YG+H V + L + L AN+ + ++ + K+ Sbjct: 8 YGIHAVQSILQHRGIDGLTLFIQDGKKQDDATVANITELAQTYGIAIQISAKDKLTKLA- 66 Query: 107 KEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L+ P L R LL+VLD + DP+N+GA LR+AVA Sbjct: 67 ESPQHQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-D 215 +I K +S S + +AK A GA+E +P+I+++NL L + G G + D Sbjct: 127 MGVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDD 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAV 271 + KP++ +A+++G+EG G+R T +T + ++ MP G I++LNVS A + Sbjct: 187 TAKPVQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGM 246 Query: 272 ALYITQNHFAK 282 LY K Sbjct: 247 VLYEASRQRFK 257 >gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] Length = 263 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 6/259 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA 85 ++ K++ + +K + + + + G+ P+ ++ + +++ R + Sbjct: 7 NQKVKRLVNLRKKRKARDEEKVFLVEGIRMFREV---PAERLLEAYVSESFYKREGGTVS 63 Query: 86 NLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143 + V+ + T+ V QG+ +A ++VLD++ D Sbjct: 64 RVLEGCAVRPEILSDTVYDYVSDTKTPQGVLCVVRQKEYTFAEAAGGERAHILVLDNLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A GI+ + + +S G++ +P R +LT+A+++M Sbjct: 124 PGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKDLTEAVRRMK 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G T D ++ A +G EG GLR + A + + M G +++L Sbjct: 184 ESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRIPMEGEVESL 243 Query: 264 NVSNAAAVALYITQNHFAK 282 N + AAAV ++ + Sbjct: 244 NAATAAAVLMFEAARQRRQ 262 >gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter fumaroxidans MPOB] Length = 252 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 7/248 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVP 97 + H+S P +L++ G + V L ++ +++ + + R + + Sbjct: 2 RKTHSSTPPHLWVSGFNPVREVLLTGRVEVLEMIVARSDQRVRELVELGALRGIAPRQET 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILR 152 + +VG A HQG+AL L+A+ L++LD + DP N+GA+LR Sbjct: 62 RDGLSALVG-HAHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAMLR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA G+I + S ++ + + A+GA ++P I+++NL AL+++ G GL Sbjct: 121 SACFLGARGVIVPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIFGL 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + + + L++G E KGLRP +M + G +++LN + + A+A Sbjct: 181 DAQAAQTIYDADLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGAIA 240 Query: 273 LYITQNHF 280 L Q Sbjct: 241 LAEVQRRR 248 >gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] Length = 232 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 15/234 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 G++ V AL + K+ ++ K+A R+ L + V + K Sbjct: 5 GINGVMEALKSG--KVNKIFVLKDATNPRIKEIVALAKKKKIPVVYTPQLPKEA------ 56 Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +G+ E +P+ +D + R ++ LD V DP N+GAI+RSA F C G++ K Sbjct: 57 RGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAGVVIPK 116 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R + +AK ++GA+ H+ R+ NL + L+K+ +G +G D + PL + Sbjct: 117 RRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDGE-PLRNVDLS 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++G E KGL ++ +A + G I +LN+S A A+ +Y + Sbjct: 176 PPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMYEFRRRL 229 >gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] Length = 327 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 27/288 (9%) Query: 18 SHYAKLRRNHRDYKKM----------QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PS 65 + A+ R H YKK + + + G + V + + P Sbjct: 37 TPKAEERTYHPAYKKKVAREAAAVKAAGPKLRGHLHTPEGYELVSGRNPVVEIVASGIPF 96 Query: 66 RKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++F + LA +A + A + V +DK+ + VHQG+ALE P Sbjct: 97 SRVFVVGSLANDERVATVLR-AATESGAELIEVTRFELDKMTDGQ-VHQGIALEIPPYEY 154 Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ + L++ LD V DPHN+GA +RSA AF DG++ +R S +A + Sbjct: 155 VDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATV 214 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGA 235 K ++GA +P R +NL AL+ + + G+ +GL ++ D + ++ G+ Sbjct: 215 WKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGGGDATVDTLDMADVPLVIVTGS 274 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT---QNHF 280 EGKGL ++T +A + + +++LN + A +ALY + +F Sbjct: 275 EGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALYQIDVKRRNF 322 >gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str. 657] Length = 259 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ D + + +G EG G+ + + MPG Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKDDMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 271 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 20/278 (7%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 +E I S+++ +L Q ++K R + + + G H V AL + + + Sbjct: 3 NEIITSVQNPLVKRLH---------QLLSRKGR--EEQQRFLVEGAHLVEEALKSGAEVV 51 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + + A HP V+ + P+T+ + + QG+ E + Sbjct: 52 TVIYDQQRDMDPACQRALANHPEAVQVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAK 111 Query: 128 AVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 V + LL+ LD + DP N+G ILR+A A + DG++ + + ++ Sbjct: 112 WVDQKREEQGSLLLLFLDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATM 171 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGL 240 GAL IP +L D + + G + + S + + ++ AL++G EG+G+ Sbjct: 172 GALFRIPVF-TQSLVDTADEWKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGV 230 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A H+ + G ++LN + AA + +Y Q Sbjct: 231 SKEMFAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQR 268 >gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502] gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502] Length = 254 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSVKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +A ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSSADQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] Length = 254 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSKDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] Length = 270 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 10/260 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ S K++ + + G+ + L T+N D Sbjct: 6 SNKQVKRVVSLRSKAKARREEGMYVVEGLRMCREL---NPEDVDALYVTENFAGDADNRK 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDH 140 + P +TV ++ + + QG+ D V+ + +MVL+ Sbjct: 63 WMGRFRP-ETVSDVVMNVMADTQ-TPQGVLAVVRQKRYTMDDIVKPAPDGRSLAIMVLET 120 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+ GI+ + + + +S G++ +P++ +L DA Sbjct: 121 IQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPKVIRSTMGSIFRMPFVYADDLQDACL 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 M + G + +QE D + ++G E GL +T A + + M G + Sbjct: 181 LMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADCLVKIPMEGKV 240 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + AA+V ++ T Sbjct: 241 ESLNAAIAASVLMFETARQR 260 >gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] Length = 242 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 7/239 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++G + V AL + ++A + L + ++ VP + I++ Sbjct: 2 EDKFVIWGRNPVIEALRSGKELEKIMVAHDSHLPKELVKLAEKRKVKIQRVPRKKIEETA 61 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G + QG+ +P+ DA+ + ++LDH+ DP N+G I+R+A Sbjct: 62 GTKKT-QGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNVGNIIRTAEVLGSS 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII + S + V+ K+++GA+ ++P ++ N+ + K G I + KP+ Sbjct: 121 GIIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGGWVISVE-KGGKPI 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++LG+EGKG+ E + + + M G I +LNVS AAA++L+ Sbjct: 180 HKVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238 >gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 357 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 11/249 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVK 94 + R Q E+ + G ++V AL P+ ++ + + + PV Sbjct: 98 RARRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVL 157 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147 V +D+I G +AVHQGLAL+ P + + L++ LD + DP N+ Sbjct: 158 EVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQVPLMVALDGITDPRNL 217 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RS AF G+I +R S +A K+++GA P SNLT L+ + G Sbjct: 218 GAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGV 277 Query: 208 QTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL L + D I +++G+EGKGL ET ++ + + ++LN Sbjct: 278 FVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGASTESLNAG 337 Query: 267 NAAAVALYI 275 AA+V LY Sbjct: 338 IAASVTLYE 346 >gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 3502] gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 19397] gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. Hall] gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] Length = 259 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ D + + +G EG G+ + + MPG Sbjct: 178 SLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] Length = 233 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 130/229 (56%), Gaps = 1/229 (0%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+H AAL NP R+I Q+LAT++ A L N P P ++ + G++AVH Sbjct: 2 YGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAVH 61 Query: 112 QGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+A+ L S ++ V L++LD V DP N+GAILRSA AF ++ +R +P Sbjct: 62 QGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNAP 121 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 E+ LAK+ASGALE +P + NL L + S F +GL + ++A Sbjct: 122 DETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRVA 181 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY Sbjct: 182 LVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIRR 230 >gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola DSM 14237] gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola DSM 14237] Length = 254 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+N K+F K L + + VP + ++++ + Sbjct: 16 IYGIRAIIEAINADKAIDKVFIQKGLKGDLFKEFETLIRRNGINSSYVPVEKLNRLT--K 73 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ TL+ + + L ++LD ++D N GAI+R+A DG Sbjct: 74 GNHQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 133 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P ++ ++ DA+ + + G +TI + ++ + Sbjct: 134 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVY 193 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A+I+G+E G+ P + A + + G I +LNVS A V LY + Sbjct: 194 DISFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLYEAVRQRS 253 >gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] Length = 253 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQTIDKIVGKE 108 G + V L P+ ++ L T+ A RL + V +D++ Sbjct: 3 GRNPVLECLRAGVPATALYVALGTE-ADERLTECVARAADSGIAIVELLRADLDRMTANH 61 Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +HQG+AL+ P D + + LL+ LD+++DP N+GAI+RS AF G+ Sbjct: 62 -LHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGV 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 121 LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDD 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 181 VDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 231 >gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] Length = 267 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 23/250 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR--------LDWDANLPHPFPVKTVPPQTI 101 +YGV V L +R+I L + +R + V+ + + + Sbjct: 6 LVYGVGPVEELLGRRAREIAVLYVNPSRRSRQRAGDPVAAVAEQARRRGVSVEELSREQL 65 Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIG 148 D +V G HQG+ L+ + + L + LD V DPHN+G Sbjct: 66 DALVAGRGDAEDGGRVHHQGVVALVGAFEYAALEDLIAAPRQRPALFVALDSVTDPHNLG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA DG+I K + S V+ K ++GA E I +++NL AL+++ Sbjct: 126 AIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVTNLARALEQLKQAEVW 185 Query: 209 TIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVS 266 GL + + L + L+LGAEG GLRP T + + M G + +LNVS Sbjct: 186 IAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLIEIPMLGAGVGSLNVS 245 Query: 267 NAAAVALYIT 276 AA VALY Sbjct: 246 VAAGVALYEV 255 >gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 249 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIEVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+ A L + A LL++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A S ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ + Sbjct: 122 AASVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24] gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24] Length = 328 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 23/300 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK---MQSFNQKSRHTSQPENLFLYGVHTVS 58 + K ++ + +H K K+ + +S + + G ++V Sbjct: 30 KGPTPKAEDRPYH--KAHKNKQLAERSAAKRPGAARGAGARSGPKGRATEEVVTGRNSVV 87 Query: 59 AALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL P++ + + + + + P+ +D++ +A+HQGL Sbjct: 88 EALRAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAIHQGLV 146 Query: 116 LETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 L+ P + N+ L + LD + DP N+GAI+RS AFS G+ Sbjct: 147 LQIPPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGV 206 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I +R S +A K+++GA +P R +NL + L+ + G +GL D L + Sbjct: 207 IVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDGDGDVSLPD 266 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + +++G+EGKGL +E + + + +++LN S A ++LY A Sbjct: 267 LSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 326 >gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] Length = 332 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 40/295 (13%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP 64 + A+ R H+ YK Q+ N++ + TS ++L + G + V AL Sbjct: 25 TPKAEDRVYHKAYKAKQATNRRKMADPRLAARRRAAKFTSDSDDLVI-GRNAVLEALRVG 83 Query: 65 SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + +AT+ + R + +D+I + + HQG+ L+ P Sbjct: 84 VPSMQLYIATRIEHDDRTREIIKLAGAQSLHLLEADRLEMDRIA-RSSNHQGVVLKVQPY 142 Query: 122 LSPTLDAVRN---------------------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L + + L + LD V DP N+GA++RSA AF + Sbjct: 143 QYSSLAELADIAERKAKAMDVVNSPSARINARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA HIP R+ NLT A++ M G+ T+GL K + Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHIPVARVVNLTKAIESMRERGYYTVGLDGGGDKLV 262 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + D + ++LG+EGKGL +E+ ++A + + ++++LN S AA ++LY Sbjct: 263 GETGFETDPLIVVLGSEGKGLSRLVRESCDAIAGIPITSMVESLNASVAAGISLY 317 >gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX] gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX] Length = 275 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 20/274 (7%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 + S++ RR + ++F Q+ R G V AL+ P + + Sbjct: 5 EFTSIRSPRIKGARRLAK-----RAFRQRERR------FLAEGPQAVREALDLPD-VVHE 52 Query: 71 LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT A+ R PV V + ++ + QGL + + L A Sbjct: 53 LYATAEAMQRHTALIRTAEQAGIPVHRVTLDVMGELA-QTVTPQGLLAVCS-FVDVPLSA 110 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V +L++VL HV DP N G +LRSA A D +I T + ++++G+L H+P Sbjct: 111 VDRPRLVVVLSHVRDPGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLP 170 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKT 244 + + + + G + K+ L++ + +A I G E GL +T Sbjct: 171 VVVGVRIEEVTGFLRDAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQET 230 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + G ++LN++ AAAV LY T Sbjct: 231 LALADETVSVPIYGRAESLNLATAAAVCLYATAR 264 >gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] Length = 265 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 115/285 (40%), Gaps = 27/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 +N+I K ++KI K K++ ++ + + G ++ A Sbjct: 2 INIIKSKDNDKIKYTKSL-------------------LKTKGRNKEKKFIIEGYRILTLA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + K+ + ++ + D L + + ++V E QG+ Sbjct: 43 LECDA-KLEYVFINEDFEKKQDHKVLLEELENKNIKIYKTSNKIFSEMVDTENT-QGILA 100 Query: 117 ETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++ + +++LD + DP N+G I+R+A + D II K + Sbjct: 101 VLRYKERDLVNNINQDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPK 160 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S G++ + I+ + +A+ + + F + ++ + + KIAL++G Sbjct: 161 VIRSTMGSIFDMNIIQTTQ-DEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGN 219 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + + + + + G ++LN + +AA+ +Y + + Sbjct: 220 EANGINDELISKSDKLVKIPIYGNAESLNAAISAAILMYEIKKYL 264 >gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 +N ++ GV+ V++++ N + + ++L +KN + V+ V Q +D Sbjct: 3 KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62 Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VG + HQG+A A L ++A L+++LD V DPHN+GA LRSA Sbjct: 63 G-VGGQVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + +A + K+++GA + I + ++NL L+ + G GL+ + Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ L + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241 Query: 276 TQNHF 280 Sbjct: 242 AVRQR 246 >gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa DSM 4126] gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa DSM 4126] Length = 258 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 14/258 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP 90 M +FN++ + + +++G V A++ I+ +N L D Sbjct: 1 MTAFNKRPKLNDK---DYIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQK 57 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 P VP + +++I K HQG+ + + +LD V L+++LD V D Sbjct: 58 VPFTKVPIEKLNRITMK--NHQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTD 115 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N GAI RSA D I+ + S ++ K+++GAL +IP R ++L + ++ + Sbjct: 116 VRNFGAIARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + + K + +A+ILG+E G+ TA +A + M G I +L Sbjct: 176 KSGLQVVACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASL 235 Query: 264 NVSNAAAVALYITQNHFA 281 NVS + A+A++ + Sbjct: 236 NVSVSCAIAVFEAVRQRS 253 >gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila RKU-1] gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2] gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] Length = 242 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 8/238 (3%) Query: 49 LFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + +YG + AL N + FQ + + + + + + Sbjct: 1 MRVYGRKILEEALRNNVPIKKVFFQKMQNPGSYFLSLVEEVEKRGIKYSFESEEKLKNLS 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 G + HQG+ + +++ + + L+++LD + DPHN+GAI+R++V +GI Sbjct: 61 GTKK-HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGI 119 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + K + G + ++NL ++++ G T D P+ + Sbjct: 120 IIPKDKSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYE 178 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 179 EDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236 >gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] Length = 248 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ KSE I LK K R+ + + G H V A Sbjct: 1 MTKITSTKSETIKRLKRLMTKKGRQ-------------------ETGQFLVEGEHLVDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + ++ QL+ ++ + W PV + D + E QG+ Sbjct: 42 IRAG--RLVQLIMAESYSPKGTWRL---EDMPVLELSDHVADLLSETEKT-QGVFAVVKM 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 R + ++VLD V DP N+G ++R+A A D ++ K +A + ++ Sbjct: 96 TPVE-----RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRAT 150 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+ + +L + L ++ GF G + EQ +K+AL++G E +G+ Sbjct: 151 QGSLFHVNVTSV-DLLEKLPELKEDGFHVYGTALSKATSYEQVAFEEKVALVIGNEAQGV 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + H+ + G +++LN + AA + +Y Sbjct: 210 HADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243 >gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund] gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund] Length = 261 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 30/284 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLI K + I ++ +K ++ Q E + G V A Sbjct: 1 MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + KI +L ++A + + + + V + + ++ QG+ Sbjct: 42 LKST-FKISHVLVGESAKEKCNSFNIFNIVSENTKISLVKDEILKELCETN-NPQGIIAI 99 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + ++ S ++ D V DP N+G I+RSA A G+I TK + Sbjct: 100 V---DNKIINIEDKSGFYVLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTL 156 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ IP I N + + + S GF+ I S D++ K+ + +G EG Sbjct: 157 RSTMGSIFKIPIIE-DNEFEIINVLKSKGFKLIVSSLDTENNFFDIDLTGKVIICVGNEG 215 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 G+ + + MPG ++LN AA++ +Y QNH Sbjct: 216 NGVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQNH 259 >gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] Length = 254 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMML 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSKDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] Length = 363 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 11/251 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96 R + + G + V AL + + RL L V V Sbjct: 111 GRPRRTEGDELVVGRNAVVEALRAGVPSSTLFIAGGLDFDERLADARRLAGRAGIAVADV 170 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 +D++ G A HQGLAL P D + LL+ LD V DP N+GA+ Sbjct: 171 GRTDLDRMCGT-APHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAV 229 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF G++ +R + +A K+++GA +P R +NL L + G + Sbjct: 230 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVV 289 Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL++DS+ +++ + D + L++G+EG+GL ++ + M G +++LN AA Sbjct: 290 GLAADSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAA 349 Query: 270 AVALYITQNHF 280 + L Sbjct: 350 GITLAEIARRR 360 >gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 258 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 YG H V A L + ++L ++ +L +D + PV V +T+D++ Sbjct: 7 EDICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRV 66 Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G A HQG+ + L + +++ L++V D + DP+N+GAI+RSA F Sbjct: 67 SG-GASHQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVF 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S S+ + KS++GA + + +SNL A++++ G +GL + Sbjct: 126 GALGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRAD 185 Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L E K+ L++G+E G+ P + + M G +LN + AA++ +Y Sbjct: 186 RYLWDEPSIRGKLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYE 244 >gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 234 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWIYGAAGEANINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] Length = 256 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 10/250 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKT 95 + T + LYG + V AL SR++ + AT +A+ W A + H V Sbjct: 10 REPRTLPDDVTILYGRNAVHEALR-GSREVQHIWATAHAVEE-PWLAAVAHDASAVDVNV 67 Query: 96 V-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILR 152 V I++ G HQG+ + AP +D + L++ LD + DP N+GAI R Sbjct: 68 VADGGWIERRSGSPD-HQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIAR 126 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G++ R S + + K+++GA+EH+P R NL D L G G Sbjct: 127 TAECAGATGLVIPARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGA 186 Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D P + + L+LG+EG+GLRP+ + ++ L + G I +LNVS AA+ Sbjct: 187 EGDGGVPYTGVDYSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASA 246 Query: 272 ALYITQNHFA 281 LY Sbjct: 247 LLYEIVRQRG 256 >gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6] gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus veneficus SNP6] Length = 227 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 21/240 (8%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + +YGV++V AL + K++ LAT N RL+ A P+ VP + + Sbjct: 1 MRVYGVNSVVEALKAKKANKVY--LATGNRRDRLERMARRA-GVPIVYVPKEKL------ 51 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+A + +P+ +D +R + L+ LD V DP N+GA +R+A F C G+ Sbjct: 52 PPDSQGVAADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCAGV 111 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR + + + K ++GA H+ R N+T+AL+K +G + IG D + +E Sbjct: 112 VIPKRRAVQVNETVVKVSAGAALHVSIAR-DNITNALKKAKKFGIKVIGAELDGEN-IEN 169 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 AL++G E +G+ ++ + + G + +LN+S AA + +Y F+K Sbjct: 170 ADLTPPAALVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMYE----FSK 225 >gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 35/286 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ ++ ++++KMQS +K R +S + G H V A Sbjct: 1 MQSITSNQNNRV---------------KEWRKMQS--KKGRLSS--GQYIIEGWHIVDEA 41 Query: 61 LNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALE 117 + + +I ++ T N L +L+ D P + P+ I E QG+ L Sbjct: 42 IKHDQ-QIDAVIVTDANFLDQLEVD---PAVTDTYLITPEVAKHISATE-TPQGVFAVLT 96 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T + + S ++LD++ DP NIG ++R+A A +G+I K + + + Sbjct: 97 TENYHESIPEKLGGS--WLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVV 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAE 236 +S G+ H+ +L + + G D + + AL++G E Sbjct: 155 RSMQGSQFHVRL-YSGDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFALVMGNE 213 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G G+ + ++ M G ++LNV+ A + ++ HF K Sbjct: 214 GNGVSADLLDKTDQNLYIPMNGEAESLNVAVATGILIF----HFVK 255 >gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus hydrogenoformans Z-2901] Length = 237 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 14/238 (5%) Query: 51 LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGV+ V AL K++ TK+ R + PV VP + + A Sbjct: 4 IYGVNPVREALMKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKL------HA 57 Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+ + +P+ +D + ++VL+H+ DP N+GAILRSA AF G+ Sbjct: 58 KSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGV 117 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + + +AK+++GA +P R +N+ + L+ + G +G + SK L Sbjct: 118 IIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWD 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G E GL + M G I +LN S AAA+ + Sbjct: 178 TDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235 >gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 268 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 11/271 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S D A DY ++ + + ++ + AL R Sbjct: 4 RITSPDDDRVA-------DYFRLTDVALRKKLETERGLYIAESEKVIRRALARGDRPRSF 56 Query: 71 LLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ + D A+ PV I+ + G LA P L+ + + Sbjct: 57 LMGQRWLDDLADIVADAEAADVPVYVGEADVIESMTGFHLHRGALASMNRPALALPEELL 116 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+++ ++VL+ + D N+GAI RSA A D ++ T R + + + G + +P+ Sbjct: 117 RDARRVVVLEDIVDHTNVGAIFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPW 176 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDK--IALILGAEGKGLRPKTQE 246 RI ++ ++ G+ ++ D L++ + +AL++G EG GL +T Sbjct: 177 TRIDPWPGSVTRLQEAGWTVAAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTVA 236 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G + +LNV+ A+AVA+Y + Sbjct: 237 ACDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267 >gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] Length = 245 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + L+R HR + + G H A Sbjct: 1 MEVIQSKQNASIKTARKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R + + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL L+ V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLL--LEDVRDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R + + ++ + + + +K AL++G EG+G Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22] gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22] Length = 253 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L +K I + + Q + + P+ P + + +VLD++ DP Sbjct: 66 RLKDDKVIKITD--AIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI ++ + +A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNP-ILEAISSFKEN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + K L I ++AL++G E G ETA ++ + G ++LN Sbjct: 181 GIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Puniceispirillum marinum IMCC1322] Length = 312 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 20/270 (7%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S ++ R ++ K+ FL+G H V+AAL NP R+I L Sbjct: 34 SASNAPRRGAPRRGAPARQNDDSQIKAAPKPPQGGYFLWGRHAVAAALVNPDRRIAALYV 93 Query: 74 TKNALARLDW---------DANLPHPFPVKTVPPQTIDKIVGKEA---VHQGLALETAPL 121 T ++ D A LP P++ + +D I G ++ VHQG+A PL Sbjct: 94 TDDSRDSFDEMWQTLAMDRQAELPDARPIE---RRRLDGIGGHDSEKVVHQGMAAAVWPL 150 Query: 122 LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +P LD +++LD ++DP N+GAILRSA AF CD IITT+R++P E+ L Sbjct: 151 DAPHLDDFIADIADKPVRIIMLDQISDPRNVGAILRSARAFGCDAIITTQRHAPEENGAL 210 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 A++A+GALEHIP IR+ NL A++ + GL+ D + ++A++LGAE Sbjct: 211 ARTATGALEHIPIIRVVNLARAVESLQDHDITVAGLAGDGTMDVGALADFPRLAIMLGAE 270 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G GLR ++E + + + +LNVS Sbjct: 271 GPGLRRLSREHCDHLVRIDIAPDADSLNVS 300 >gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT] gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT] Length = 262 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 30/284 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLI K + I ++ +K ++ Q E + G V A Sbjct: 1 MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + ++ +L ++A+ + + ++ V V + + ++ QG+ Sbjct: 42 LKST-FQVSHMLIAESAIEKCNSFNILNSVDENTKVSLVKDEILKELCETN-NPQGIIAV 99 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + + +++D V DP N+G I+RSA A G+I TK + Sbjct: 100 V---DNKKISIEDKNGFYILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTL 156 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ IP I N + + + GF+ I S D++ K+ + +G EG Sbjct: 157 RSTMGSIFKIPIIE-DNDFEVINDLKLKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEG 215 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 G+ + + MPG ++LNV AA++ +Y QNH Sbjct: 216 NGVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQNH 259 >gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str. Loch Maree] Length = 259 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKREKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ D I + +G EG G+ + + MPG Sbjct: 178 LLQKKGFKLLVSSLDTNSNFYDVNMKDNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 57 -ENSQGVAVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAVGEANINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKVVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228 >gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia dioxanivorans CB1190] Length = 329 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 14/257 (5%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPF 91 + ++++ PE + G + V L P+ + + AT + + Sbjct: 73 NRSRRAGDGETPETVL--GRNPVVECLRAGVPATALHVAVGATADERVKEAVHLAADAGI 130 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDP 144 + VP +D++ G A+HQG+AL P D + L+ LD V DP Sbjct: 131 SILEVPRNDLDRMAG-GALHQGVALVVPPYEYAHPDELLEAAVGSGRPALIAALDGVMDP 189 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RS AF G++ +R + +AV ++++G +P R +NLT LQ+ + Sbjct: 190 RNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYAN 249 Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G GL++D ++ D + L++G+EGKGL +ET + + +++L Sbjct: 250 TGLMVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESL 309 Query: 264 NVSNAAAVALYITQNHF 280 N S AA V L Sbjct: 310 NASVAAGVVLAEVARRR 326 >gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] Length = 247 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG ++V L + KI ++ T + + P+ + + +I G Sbjct: 8 VVYGRNSVLELLGSDPEKIEKIYMQFNTGHFKLKEILITARRSKIPLGKARLEKLSEIAG 67 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + L+ + S LL+VL +NDPHN+GAI+R+A A + DG Sbjct: 68 TTK-HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + +A + K+++GA+ H ++ +L L+ + GFQ I ++K Sbjct: 127 VILVEGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYT 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A I+G E KGL ++ + M G +++LNVS +A V LY Sbjct: 187 EVDFRIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQR 245 >gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] Length = 258 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 10/236 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90 M+ + R + + G + V AL P KIF +A + Sbjct: 1 MREQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIFLARGETDATLGHIASSAREKG 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVND 143 V + +D + A HQG+ A T+D + N L++V D ++D Sbjct: 61 IVVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLIVVCDELSD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA++R+A G+I KR S +AV+AK+++GA+ ++P R+ NLT L+++ Sbjct: 120 PHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNLTALLKELK 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G G ++D L A+++G+EG G+ E + M G Sbjct: 180 DEGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIPMKGK 235 >gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 244 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ N ++I ++ +A + L + + VP + ++++ Sbjct: 7 IFGIRAIIEAI-NAKKEIDKVFIQSDAQSELMQELQKLMKKNSINFSYVPVEKLNRLTPN 65 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG AP+ L+ + L ++LD ++D N GAI+R+A D Sbjct: 66 --NHQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S + K+++GA+ ++P ++ ++ DA+ + + G +T+ + ++ + Sbjct: 124 GIIVQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY T Sbjct: 184 YDISLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243 Query: 281 A 281 Sbjct: 244 G 244 >gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGEIVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E ++K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEENYSNKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF] gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF] Length = 254 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 113/282 (40%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R +Y L G H + A Sbjct: 1 MKEIQSVKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSSTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 261 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +R + E + G+ + P ++++ A+++ + Sbjct: 10 QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDFYN--EHRV 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144 H V+ V PQ + +I QG+ + D + L +VL+++ DP Sbjct: 65 IFEH-MDVELVSPQVMKEISDT-MTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ +G+I + + + +S G++ +P++ + +L + + M Sbjct: 123 GNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQ 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 T + +E A +G EG GL K + + M G +++LN Sbjct: 183 KNIITYAAHLNG-TDYTKEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLN 241 Query: 265 VSNAAAVALYITQNHF 280 + A+ + +Y + Sbjct: 242 AAMASGLLVYEARRQR 257 >gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 257 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +R + E + G+ + P ++++ A+++ + Sbjct: 6 QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDFYN--EHRV 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144 H V+ V PQ + +I QG+ + D + L +VL+++ DP Sbjct: 61 IFEH-MDVELVSPQVMKEISDT-MTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDP 118 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ +G+I + + + +S G++ +P++ + +L + + M Sbjct: 119 GNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQ 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 T + +E A +G EG GL K + + M G +++LN Sbjct: 179 KNIITYAAHLNG-TDYTKEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLN 237 Query: 265 VSNAAAVALYITQNHF 280 + A+ + +Y + Sbjct: 238 AAMASGLLVYEARRQR 253 >gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 234 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E ++KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEENYSNKIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 260 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + K++ + G V P + + +++ + + + Sbjct: 6 SNKQIKNLVQLLTKAKARREQGLFVAEG---VRMYRETPKDDLVKTYVSESFYEK-EENR 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDP 144 L ++ V + QG+ +R + LL++L+ + DP Sbjct: 62 ALLQGTELEIVTDRVFAS-TSDTKTPQGILCLVRQREYTPAQMLRAENPLLLLLEDIQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I R+A A GII + + + +S G++ +P++ ++ +K+ + Sbjct: 121 GNLGTIFRAAEAAGATGIIMSSGTADIYNPKTIRSTMGSIYRMPFLYTKDIAAMQEKLKA 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +T ++ A ++G EG+GL E A + + M G +++LN Sbjct: 181 RGIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + +AA+ ++ + + Sbjct: 241 AAVSAAILMFEAKRQRS 257 >gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 260 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 110/271 (40%), Gaps = 16/271 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S K+ K + +K+R ++ + G V A P ++ + Sbjct: 2 ITSTKNDQV----------KAVIELKKKARARNEQGLFVVEG---VRMAAELPKDQVKSI 48 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR- 130 ++ A+ +A + +P + ++ ++ QG+ + ++ Sbjct: 49 YVSE-TFAKNPENAAILAEYPGYELVSDSVFAVMSDTQTPQGVLALVRQFSYGMDELLKS 107 Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LMVL+++ DP N+G ILR+ G+I ++ + + +S G++ +P+ Sbjct: 108 DRPAHLMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPF 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + K EQE A ++G EG GL K + A Sbjct: 168 FYTDDLEQTVLDLKARGIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LN + AA++ ++ T Sbjct: 228 TWVKIPMEGKVESLNAAIAASILMFETARQR 258 >gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 265 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 11/251 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKT 95 + + ++ F++G+ V A+ KIF A + + H Sbjct: 11 ESGQAEPNKKDDFIFGLRPVIEAIEAGKTIDKIFMQNALQGDIYYELKTLLSKHNIRPNY 70 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP + +++ K HQG+ + + ++ V + L++LD + D N G Sbjct: 71 VPIEKLNRFTRK--NHQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILDRLTDVRNFG 128 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A II ++ + ++ K+++GA+ ++ + NL A+ + G Q Sbjct: 129 AICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAVDFLQQSGLQ 188 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 S ++K + A+++G E G+ + + L + G ++LNVS A Sbjct: 189 VFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 248 Query: 269 AAVALYITQNH 279 LY Sbjct: 249 CGAILYEAVRQ 259 >gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 229 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++V AL I ++ K + + N ++ + Q ++++V K Sbjct: 4 LIYGKNSVLDALKAN-FPIAKIYLQKGLVNKAITFKN------IEYLSIQEMNQLV-KNG 55 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E L + L+++LDH+ DPHN GAI+R+A F II K Sbjct: 56 NHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKN 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKN 226 + + + K +SGA I IR+ +L D L+++ GF + D K L + Sbjct: 116 RACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIYSSTLDDKATKLHKTKFA 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 LI+G E G+ + + ++ ++ G +++LNV++A AV LY Sbjct: 176 TPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEA 225 >gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] Length = 248 Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 19/248 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G V AL I +L ++ L V+ VP + +D Sbjct: 3 DFIEGKRPVIEALRTGV-PIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61 Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + HQG+ + AP + + L+++LDH+ D N+GA+ RS Sbjct: 62 SDRGS-HQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K + + KIAL++G E +G+ E + L + G + +LNV+ AA + Sbjct: 181 EHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240 Query: 274 YI--TQNH 279 Y QN Sbjct: 241 YEWLRQNQ 248 >gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] Length = 247 Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 14/242 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+ V A+ I +++ + L + P + VP Sbjct: 9 IFGIRAVIEAIQQEKE-IDKVMLKQGVRGELFQQLFSLIRERNIPFQYVPEDVFKPFA-- 65 Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ E +P+ L +A +++LD V D N GAI+RSA D Sbjct: 66 DRNHQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAECAGVD 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKP 219 +I + S S+ K+++GAL H+P R+ NL ++++ G + + ++K Sbjct: 126 VVIIPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATEKAEKF 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A+I+G+E KG+ + AT + G I++LNVS AAAV L+ Sbjct: 186 YTGADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLFEVVRQ 245 Query: 280 FA 281 Sbjct: 246 RG 247 >gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1] gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1] Length = 242 Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V+ + I ++ + + + F + V + I+ +VG EA Sbjct: 6 LIYGKHAVNEFIKKHPNLIKKIYISSDF-----KIDKSNNEFQILKVDLKKIENLVGNEA 60 Query: 110 VHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E N +L+++LD + DP+N GAI+RS+ D I+ Sbjct: 61 NHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIV 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222 ++ + K+++G + + +++NL++A++ + GF +S+ + + Sbjct: 121 ILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESNDMRK 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ A+++G E G+ + + + I + N + A ++ LY N+ K Sbjct: 181 VDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGK 240 >gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] Length = 247 Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 13/243 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + +YG+H ++ +L + S I ++ K A+ + PV VP + +++ Sbjct: 3 KQKLIYGIHALNESLASHS-DIDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ +P+ L+++ +++LD V D N GAI R+ Sbjct: 62 FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239 Query: 277 QNH 279 Sbjct: 240 VRQ 242 >gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 269 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 111/264 (42%), Gaps = 8/264 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF--QLLATKNALARLDW 83 ++ KK+Q +K++ + + + G+ S + +K++ Q A K R+ Sbjct: 6 SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVYLSQSFAEKEECGRILQ 65 Query: 84 DANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLD 139 + + V+ V + + QG+ + + + LLM+L+ Sbjct: 66 EKGISIEETAYVEIVDDKIFKNLSDT-VTPQGVLCLVKMENFTLSEILSGEENPLLMILE 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-A 198 + DP N+G ILR+ G+I ++ + + +S G++ +P I ++++ D Sbjct: 125 DLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEDEV 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + G T + + ++E A ++G EG GL E A ++ + M G Sbjct: 185 LPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGLSEHLTERADTLIKIPMQG 244 Query: 259 IIKALNVSNAAAVALYITQNHFAK 282 +++LN + A+ + +Y K Sbjct: 245 KVESLNAAMASGILMYEAYRQRRK 268 >gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] Length = 284 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 104/256 (40%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + +K++ ++ E + G P + Q+ +++ A D Sbjct: 18 SNQQMKNLMLLMKKAKARNEQELFVVEGRKMFQEV---PEEWLKQVYVSESFFAENDKML 74 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144 + + V + + QG+ + ++ + L++L+ + DP Sbjct: 75 A---GYTYEIVSDSVFKAVSDTQ-TPQGILCLVRKPQYRLEELLKGADTHLLILESIQDP 130 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G +LR+ G++ + +S G++ +P+ +L + + ++ + Sbjct: 131 GNLGTMLRTGEGAGISGVVMNHTTVDLFNPKTIRSTMGSIYRMPFFVTRDLAETICELKN 190 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +T K ++ A ++G EG GL +T + A + + M G +++LN Sbjct: 191 AGVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLN 250 Query: 265 VSNAAAVALYITQNHF 280 + +A++ +Y T Sbjct: 251 AAISASLLMYETNRQR 266 >gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] Length = 244 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 103/240 (42%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ + V +D+++ Sbjct: 5 LIYGKHVVYELLKKHKNMVKEIWV--KNLKLLNEFDLKNTKIKINVVSENKLDQLLKTNE 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E D + + L++VLD ++DP+N GAI+RS + DGII Sbjct: 63 PHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ I + +NL +A++ + + GF + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K +I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKTVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8] gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 242 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 8/238 (3%) Query: 49 LFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + +YG + AL N + FQ + + + + + Sbjct: 1 MRVYGRKILEEALRNNVPIKKVFFQKMKNPGSYFLSLVKEVEKRGIKYSFESEERLKNLS 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 G + HQG+ + +++ + + L+++LD + DPHN+GAI+R++V +GI Sbjct: 61 GTKK-HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGI 119 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + K ++G + ++NL ++++ G T D P+ + Sbjct: 120 IIPKDKSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYE 178 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 179 EDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236 >gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 258 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 104/257 (40%), Gaps = 11/257 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHP 90 M+ + + + F++G+ V A+ K+F + ++ H Sbjct: 1 MKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAKHK 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 VP + +++ K HQG+ + + +++AV + L++LD + D Sbjct: 61 IRPNYVPIEKLNRFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N GAI R+A D II ++ + ++ K+++GAL ++ + NL + + Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++K + AL++G E KG+ + + L + G ++L Sbjct: 179 QSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238 Query: 264 NVSNAAAVALYITQNHF 280 NVS A LY Sbjct: 239 NVSVACGAILYEVVRQR 255 >gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] Length = 234 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E ++KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEENYSNKIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] Length = 345 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 15/263 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLD 82 + ++ Q S E+ + G ++V AL P+ ++ +AT+ R+ Sbjct: 73 DAPQQQRSTRPAQSRVAKSADESEMVTGRNSVLEALRAKIPAHTLY--MATRIEYDDRVK 130 Query: 83 WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQ 133 L V V +D++ G ++VHQGLAL+ P ++A Sbjct: 131 EILKLATSRGIAVLEVMRPELDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVP 190 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD + DP N+GAI+RS AF G+I +R S +A K+++GA P + Sbjct: 191 LLVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMAN 250 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMA 252 NLT +++ G +GL D L + + + +++G+EGKGL E ++ Sbjct: 251 NLTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIV 310 Query: 253 HLHMPGIIKALNVSNAAAVALYI 275 + + ++LN AA+V LY Sbjct: 311 SIPISASTESLNAGIAASVTLYE 333 >gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 251 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 14/243 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V A + + +L K+ H V V +D + + Sbjct: 6 VEGRNVVIEAFRSGK-TVDKLYIRDGLKDYAISTILREAKKHGTYVNFVSKDRLDGM-SE 63 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A +++ + + +LD + DPHN+GAI+R+A Sbjct: 64 TGNHQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A +A++++GA+ + P +++N+ ++++ G + +K + Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCADMGGEK-M 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279 I LI+G EG G+ ++ +A + M G I +LN S A V Y + Sbjct: 183 YNIDLTGSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQR 242 Query: 280 FAK 282 AK Sbjct: 243 IAK 245 >gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 253 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 9/256 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + + K+++ QK +H +Q + G H V AL I LL T L+ Sbjct: 2 KEIQSKKNTFIKEIKKLTQK-KHRTQTNTYLIDGWHLVQEALQ-AKVPIKALLVTPRGLS 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + + I ++ QG+ L + + ++LD Sbjct: 60 EANGQLDDYQEESYLIT--EEIAAMLSDLPTPQGIFAVVEKQEQ-NLQTLTGN--WLILD 114 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +V DP N+G ++R+A A G+ + + S + +S G+ H+P + + + L Sbjct: 115 NVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPILEGA-IPPFL 173 Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S G G + P + K A ILG EG+G+ P+ ++ + G Sbjct: 174 KQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGVHPELLALTDKNVYIPIYG 233 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ AA + +Y Sbjct: 234 QAESLNVAIAAGILMY 249 >gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K + S Q+ ++ + + G+ V+ + +L ++ + L+ Sbjct: 11 SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDI--GKKDCLRSILIRESKRSELEP 67 Query: 84 DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V DKI QG+ ++ + L + LD V Sbjct: 68 LVQKGFTVSSVYVVQDSIFDKI-EHSVNGQGILGIAKKCVNDLHSFIVEDGLYVALDGVQ 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+AVA GI K + +S AL +IP L++ + Sbjct: 127 DPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDVTLSEFYDFI 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +T S ++ KP + +ILG EG G+ + E + M G I++ Sbjct: 187 KDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAITIPMYGDIES 246 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS AAA+ +Y + Sbjct: 247 LNVSIAAALCMYKVREQI 264 >gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] Length = 257 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 6/239 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K++ +KSR +Q G V P + +L ++ + + + Sbjct: 7 NQKVKELLQLQKKSRIRNQEGVFIAEGSRMVGE---TPKESLVRLYVSETYYKKHEEELK 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPH 145 + P V T+ V QG+ + + + + ++VLD++ DP Sbjct: 64 KYNRQP--EVLTDTVFAYVSDTKTPQGILAVVRQMEYTMEEITGKGNPHILVLDNLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I R+A A GI+ + + +S GA+ +P++ + ++ + + + Sbjct: 122 NLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVEDMIEGIDNLKKN 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + D K ++E A ++G EG GLRP+ E A + M G ++LN Sbjct: 182 NIRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRIPMEGQAESLN 240 >gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 320 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 24/291 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H K+ + + + + + + + G + V L Sbjct: 37 TPKAEDRVYH--KAHKRKVEQQRK-------ASGRHDRRNLHGSELVVGRNPVVECLRAK 87 Query: 65 --SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + ++ T N RL + V VP +D++ G +HQGL L Sbjct: 88 VSATALYVAEGTDN-DDRLTEAVRVAGDRAITVLEVPRIELDRMTG-NGMHQGLGLLVPE 145 Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + ++ L++ LD++ DP N+GA++RS AF G++ +R S S + Sbjct: 146 YQYVDVQDLIDRAHASSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 205 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T AL++ G+Q +GL + L+ + +++ Sbjct: 206 AVAWRTSAGTAARLPVAKATNMTRALKQFQKEGYQVVGLDAGGDHTLDTYDGTTPVVVVV 265 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282 G+EGKGL ET ++ + M +++LN S AA V L + Q K Sbjct: 266 GSEGKGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQRRAVK 316 >gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] Length = 247 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 15/245 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKI 104 + +YG H V A+ + + +++ + + + + P + VP + ++K+ Sbjct: 6 SEIVYGRHPVVDAIKSGW-PVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERLNKL 64 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G HQG+ +P+ L+ + + L+++LD + D N GAI RSA F Sbjct: 65 AG--GNHQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSAEVF 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ + + S +A K+++GAL IP R ++ A++ + G + + Sbjct: 123 GAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDLAAT 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-- 275 + +AL++G+E +G+ P A + G +LN S AA + LY Sbjct: 183 ASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYEAT 242 Query: 276 TQNHF 280 Q H Sbjct: 243 RQRHL 247 >gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 237 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 16/232 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTV-PPQTIDKIVGKE 108 + G++ V L N + I +L K L L +K + I+ Sbjct: 4 VIGINPVLEVLQNREKTIEKLEVYKGVRGEVLQKIQRLASERNIKIFYTNKKIE------ 57 Query: 109 AVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG + D + ++ ++++LD + DP N GA++RSA F D Sbjct: 58 -NSQGFCIFLTDYDYYREFDEILENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDA 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + + K+++GA+E++P ++++NL++ ++K+ + G + +++ Sbjct: 117 IIIPERNSVRINETVVKTSTGAIEYVPIVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSA 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E K+ L+LG EG GLR K +E + + M G I +LNVS A + L Sbjct: 177 EEQYPQKVVLVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILL 228 >gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823] gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis DSM 16823] Length = 274 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 13/269 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 K R R Q R + +YG+ V A+ N I ++L K Sbjct: 4 KKNDREERGGGFNQDKRNFERKPKEDPTDIIYGIRVVIEAIKNEVE-INKILIQKGIDKD 62 Query: 81 LDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130 L + + ++ VP + ++K+ HQG+ T+P+ ++ + Sbjct: 63 LFEELRTVLTGKEYQLQFVPVEKLNKLTVN--NHQGVIAFTSPVEYKNIEELCDQWLSEG 120 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++VLD + D N G I R+A D I+ + S SA K+++GAL IP Sbjct: 121 KEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIPVC 180 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L ++L + GFQ + + SK E A+I+G+E G+ + + Sbjct: 181 KTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMSDV 240 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I +LNV A + LY Sbjct: 241 RLSIPMAGDISSLNVGVATGMILYERLKQ 269 >gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533] gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533] gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 253 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLY-VLGTAEALKKLDTTY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ I + + Q + + P+ P + + +VLD++ DP Sbjct: 66 KLKDNKVIQITD--AIAQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ + +A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 181 GLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] Length = 326 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 17/256 (6%) Query: 40 SRHTSQPENLF---LYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFP 92 SR T++P + G + V AL P+ ++ LAT +A A P Sbjct: 65 SRPTTRPRGELPETVVGRNPVVEALRAGVPATALYVAGGLATDERIAEAITGAA-ERGIP 123 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145 V +D++ G A+HQG+AL P + + + L++ +D V DP Sbjct: 124 QLDVSRPELDRLTG-NAIHQGVALVVPPYQYAHPEDLLSRARDSGRAALIVAVDGVTDPR 182 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA AF G++ +R S +A ++++G + R +NL L+ + Sbjct: 183 NLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAAQ 242 Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G GL +D + E+ + L++G+EG+GL T+ + M +++LN Sbjct: 243 GLMIAGLDADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESLN 302 Query: 265 VSNAAAVALYITQNHF 280 S AA V L Sbjct: 303 ASVAAGVVLAEVARRR 318 >gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] Length = 236 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +AL N +R+ +LLA +N + V+ V + ++ ++ K A HQG+ Sbjct: 1 MSALTNQNRRCIELLAPENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60 Query: 115 ALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ +S Sbjct: 61 ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228 PSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ +++ K Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] Length = 246 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G V A+ KIF TKNA + ++A P VP ++K+V Sbjct: 7 IFGSKAVLEAILAGKTIDKIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLVP-- 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ TL + L+++LD V D N+GAI+R+AV Sbjct: 65 LNHQGIVALLSPVPLVTLSHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K+ S S + K+++GAL H+P R +NL ++ + + G Q I ++ + Sbjct: 125 LVLPKQGSASLGSGAMKTSAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q A++LG+E KG++P+ A + M G I +LNVS AAA+ LY + Sbjct: 185 QVKLTVPTAILLGSEDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQRN 244 >gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii DSM 22836] Length = 246 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 E ++G+ + A+ I +++ + L++ + V+ VP + +D Sbjct: 2 KEKEMIFGIRAIIEAIEAGKE-IDKVIVKRELQGDLSKELFALLKSRDIAVQRVPNERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K HQG+ + + ++ + ++VLD + D N GAI R+ Sbjct: 61 RFTRK--NHQGVIAFLSAITYEHIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D I+ + S + +A K+++GAL IP + +LT+A+Q + + G + + + Sbjct: 119 VAGVDAIVIPAKGSVTVNADAIKTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATER 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + IA ++GAE G+ A ++ + G I +LNVS AA V +Y Sbjct: 179 GADDYTAVDYSGPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYE 238 Query: 276 TQNH 279 Sbjct: 239 VIRQ 242 >gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] Length = 244 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++YG+ + A+ + K++ L + L H VP + +DK Sbjct: 2 EKTTYIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 I HQG +P+ +L+ + + ++ ++LD V D N GAI+R+A Sbjct: 62 ISS-HGNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECT 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 II + S + K+++GA+ +IP ++S++ DA+ M ++G TIG + S Sbjct: 121 GVSAIIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKST 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + N IAL++G+E +G+ P T + L M G I +LNVS A LY Sbjct: 181 KLVYDIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILYEIV 240 Query: 278 NH 279 Sbjct: 241 RQ 242 >gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ ++++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAIYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228 >gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 249 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H++S A KIF K + PV VP + +D++ K Sbjct: 6 MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + LD + + L++LD + D N GAI R+A D Sbjct: 66 --NHQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 124 AIIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242 >gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20] gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20] Length = 259 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 9/261 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 D + + K+++ QK +H +Q + + G H V AL + I LL T Sbjct: 5 DKMKEIQSKKNTFIKEIKKLTQK-KHRTQTNSYLIDGWHLVQEAL-HAQVPIKALLVTPR 62 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L+ + + + I ++ QG+ L + + + Sbjct: 63 GLSEANGQLDDYQEESYLIT--EEIAAMLSDLPTPQGIFAVVEKQEQD-LQTLTGN--WL 117 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD+V DP N+G ++R+A A G+ + + S + +S G+ H+P + + + Sbjct: 118 ILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPIVEGA-IP 176 Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+++ + G G + P + K A ILG EG+G+ + ++ Sbjct: 177 PFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGVNQELLALTDKNLYIP 236 Query: 256 MPGIIKALNVSNAAAVALYIT 276 + G ++LNV+ AA + +Y Sbjct: 237 IYGQAESLNVAIAAGILMYFA 257 >gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A +N ++++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNFDYYKDFDEAYEELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] Length = 252 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 9/248 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPP 98 LYG + V AL +A +A A PVK +P Sbjct: 2 RERPRGTELLYGRNAVMEALRGRRSLRRLFVAEGSARQPRVAAIIQAAEKRRLPVKHLPQ 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155 + + +++ + HQG+ALET P D + + ++ LDH+ DP N+ ++R+A Sbjct: 62 RDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNLATLMRTAE 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SS 214 A G++ R + + + +++GA+EH+ ++NL AL++ G+ + L + Sbjct: 121 AVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGYWVVALEAG 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + L++G+EGKG+ P A L M G + +LN + A ++ALY Sbjct: 181 PEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALY 240 Query: 275 I-TQNHFA 281 + A Sbjct: 241 ELLRRRLA 248 >gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] Length = 270 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 118/289 (40%), Gaps = 34/289 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + IS +++E I LK H K R R + G+ V A Sbjct: 6 VEFISSRENECIKRLKKLHDKKYREEFRSF-------------------ITEGLKLVREA 46 Query: 61 LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 ++ I ++ +++A RL D + V P + + + + Sbjct: 47 IDYQIECINLVIFSQHAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ G+L H+ +R + ++ + F + + + + + + Sbjct: 162 IYNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++G E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 222 VVIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 239 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 11/241 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGK 107 + +YGV+ V+ AL I ++ KN R + V Q + ++ K Sbjct: 1 MVIYGVNPVAEALRAGY-PIMKIFVEKNFKDREKVLETARQAGIKVVKTTKQKLTELA-K 58 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ +P+ + AV + L+ LD + DPHN+GAI RSA AF GI Sbjct: 59 TTKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTGI 118 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + S + + +AK+++GAL ++P+ +++ AL++ G +GL + KPL + Sbjct: 119 VIPRDRSVTVTETVAKTSTGALFYVPFAVVNSFVTALREFKEMGGWLVGLEA-GGKPLSK 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNHF 280 + L+ G+EG+GL T + + + M G + +LNVSNA A+ LY Q + Sbjct: 178 FEFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYI 237 Query: 281 A 281 Sbjct: 238 N 238 >gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] Length = 272 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 10/260 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LD 82 ++ K + N+ SR + + + G+ P + ++ +++A A D Sbjct: 12 SNPKVKMLNKLNKDSRLRRERDVFIVEGIRMFREI---PVDSVDEIYMSESAYAEYCDED 68 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDH 140 L + V + V + QG D ++ ++LD Sbjct: 69 DLQELYNAAEVTVMSDSVFAG-VSQTKTPQGCMAVVRCFHYEMTDIAGSTDTATYLILDT 127 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I RSA A G+I + + +S GA+ +P+++ +L + Sbjct: 128 IQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVRSTMGAIFRVPFVQSDDLIYTID 187 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G G D ++ L DKIA ++G EG GL +TA + + M G + Sbjct: 188 ALKRKGVLIYGAHLDGEE-LYDTEFPDKIAFLIGNEGNGLSKAVSDTADRLLRIPMEGKV 246 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + +A + Y Sbjct: 247 ESLNAAISATLLSYEAMRQR 266 >gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec] gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec] Length = 386 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQ 99 + + G + V AL + + R+ L + V Sbjct: 134 RRVETDELVVGRNAVVEALRAGVPATTLYIAGGLDFDERIADARRLAGRAGLAVVDIGRF 193 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ G A HQGLAL P D V L++ LD V DP N+GA++RS Sbjct: 194 ELDRLCGT-APHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVRS 252 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF G++ +R + +A K+++GA +P R NLT L+ G +GL+ Sbjct: 253 AAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 312 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D + L++ ++ D + L++G+EGKGL E + M G +++LN A +A Sbjct: 313 ADGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIA 372 Query: 273 L 273 L Sbjct: 373 L 373 >gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 260 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81 + + +K ++ ++ R + L G + A + +I ++ ++ +L Sbjct: 6 SKENNFFKSIKKLKER-RFRQKEGKFILEGFRLIEEA-AKANMEIEYIILSQGNEEKLYN 63 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + + +I E QG+ + + + +V D V Sbjct: 64 SSLKEVINDDKIYVFSSSLFLQISSTE-HPQGVIAVVK---NKKMTIDLDGGFFLVCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+ A DGII TK + +S G++ ++P ++K Sbjct: 120 QDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDFSIIKK 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + S + K +E KI L +G EG G+ + E A+ + MPG + Sbjct: 180 LKDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVKIPMPGGAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A ++ L+ Sbjct: 240 SLNVAIATSIILFEKVRQ 257 >gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K + S Q+ ++ + + G+ V+ + +L ++ + L+ Sbjct: 11 SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDI--GKKDFLRSILIRESKRSELEP 67 Query: 84 DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V DKI QG+ ++ + L + LD V Sbjct: 68 LVQKGFTVSSVYVVQDPIFDKI-EHSVNGQGILGIAKKCVNDLHSLIVEDGLYVALDGVQ 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+AVA GI K + +S AL +IP L++ + Sbjct: 127 DPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDVTLSEFYDFI 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +T S ++ KP + +ILG EG G+ + E + M G I++ Sbjct: 187 KDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAITIPMYGDIES 246 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS AAA+ +Y + Sbjct: 247 LNVSIAAALCMYKVREQI 264 >gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 234 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A + L+++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGVAVYISNYDYYKDFDEAYEELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYANKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] Length = 248 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 19/248 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G V AL I +L ++ L V+ VP + +D Sbjct: 3 DFIEGKRPVIEALRTGV-PIKSILMADNMQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61 Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + HQG+ + AP + + L+++LDH+ D N+GA+ RS Sbjct: 62 SDRGS-HQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K + + KIAL++G E +G+ E + L + G + +LNV+ AA + Sbjct: 181 EHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240 Query: 274 YI--TQNH 279 Y QN Sbjct: 241 YEWLRQNQ 248 >gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] Length = 279 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 118/300 (39%), Gaps = 45/300 (15%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K +++I + +S +K + + G+ V A Sbjct: 1 MEIISSKDNKRIKYI------------------RSLLEKGNIRKKNHQFVVEGIKLVDEA 42 Query: 61 LNNPSRKIFQLLATKNALARL------------DWDANL----PHPFPVKTVPPQTIDKI 104 L K+ +++ ++ L + D N+ + V + Sbjct: 43 LEYG--KVLEVVCAESLYNELISGDLSGNRLLAENDKNITNYVKKGSSLLVVSDTVFKSM 100 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQL-LMVLDHVNDPHNIGAILRSAVA 156 + QG+ LD +N ++ L+VL+ DP N+G I+R+A A Sbjct: 101 -SETKTPQGILAVAEMPDYRLLDKGFLEQAYTKNGKIKLLVLEDTADPGNLGTIMRTAEA 159 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + + +S G++ +P+ + +L + ++++ G Sbjct: 160 AGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVEDLKETIKELKKSGISFYATHLKG 219 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + + + A+I+G E +GL + + A + + M G +++LN + AAA+ +Y Sbjct: 220 EKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279 >gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 244 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 104/240 (43%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + + L+++LD ++DP+N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ I + +NL +A++ + + F + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] Length = 326 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 15/273 (5%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNN--PSRKIFQL-L 72 H A R+ R+ + R T++ + + G + + AL + P+ +++ Sbjct: 46 HPAGKRKEAREKLEAAQEKHAQRRTNRSGSRAVEVIAGRNAIVEALRSDMPADRLYVASR 105 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129 + + + V +D++ +VHQG+A+ +D + Sbjct: 106 LDHDDRTKEILEIATERGIAVVEATRPELDELTD-GSVHQGVAMGVPAYEYLEVDDLLDA 164 Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + LL+ LD V DP N+GAILR+ AF G+I +R + +A K ++GA Sbjct: 165 AASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAA 224 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244 +P R++NL +L+ + G +GL D+ + D + L++G+EGKGL Sbjct: 225 RVPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVRDLPFAADPLVLVVGSEGKGLSRLV 284 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +ET ++A + + +++LN + AA + LY Sbjct: 285 RETCDAIAAIPISTTVESLNAAVAAGITLYEVA 317 >gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 321 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 20/292 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQS------FNQKSRHTSQPENLFLYGVHTVSAA 60 +KS+ + + A+ R NH Y+K + Q+ R + + G + V Sbjct: 27 QKSKGLQGKGPTPKAQDRPNHPAYRKANAAAKANAVRQQRRKAADAAPETVAGRNPVVEC 86 Query: 61 LNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L P+ ++ L +A R+ L V V +D+I G A+HQGL L Sbjct: 87 LRAGIPATALYVALGI-DADDRVAEAVQLAASRGISVLEVQRGELDRITG-GAMHQGLGL 144 Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + P + LL+ LD V DP N+GA++RSA AF G++ +R S Sbjct: 145 QVPPYEYAEPRDLLRAAKESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRS 204 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDK 228 S +AV ++++G +P +NLT L++ G IGL + ++ Sbjct: 205 ASMTAVAWRTSAGTAARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGP 264 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EG+GL +ET + M +++LN S AA V L Sbjct: 265 LVVVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRR 316 >gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 250 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 Q + R + P L+LYG+HTV+AAL NP R++ +LL T A A L P Sbjct: 1 QDAGRAPREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQA 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAIL 151 + V + ++AVHQG AL PL L+ ++ +++LD V DP N+GAIL Sbjct: 61 ERVERARFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF ++ R +P E+ +A++A GAL+ +P +R NL + + G+ +G Sbjct: 121 RSAAAFGAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMG 180 Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L +K L D AL+LGAE GLR +ET + L + +++LNVS AAA Sbjct: 181 LDGTAKTELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAA 240 Query: 271 VALYITQN 278 +ALY Sbjct: 241 IALYELSR 248 >gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] Length = 329 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 30/285 (10%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNN--PSRKIFQL- 71 H A + D +KM +R + + + G + V AL P+ ++ Sbjct: 34 HKAYKAKKVADRRKMADPRLAARRRVAKFASESDDLVIGRNAVLEALRCGVPASTLYIAA 93 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + R H + +D+I + + HQG+ ++ P +L + Sbjct: 94 RIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQPFQYSSLAELVE 152 Query: 132 S---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 L + LD V DP N+GA++RSA AF +G+I +R S Sbjct: 153 RADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSA 212 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKI 229 S +A K ++GA H+P R+ NLT A++ + G+ +IGL + E + D + Sbjct: 213 SVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPL 272 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++LG+EG GL + T +A + M ++++LN S AA + LY Sbjct: 273 VVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317 >gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 325 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 19/261 (7%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDAN 86 + + + R + ++ ++G + V A + +L + K+ Sbjct: 60 TQRAAARDRYRPNTAADSEIIFGRNPVVEA-AAAGVPLKRLFVSASLMKDERLSKVVQRG 118 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQL 134 ++ P +D+I HQG+A E A + + + L Sbjct: 119 AASGAKLQECSPADLDRITA-GGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPL 177 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD V DPHN+GA LRSA AF DG+I + S S +A + K ++GA +P + N Sbjct: 178 LIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARN 237 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 LT ALQ++ + G IGL L + + + + ++ G+EGKG+ +ET + Sbjct: 238 LTHALQQLQAEGAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVS 297 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + +++LN + A +ALY Sbjct: 298 IPIDKRMESLNAAVATGIALY 318 >gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 234 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57 Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+A+ + D A ++ ++++LD + DP N GAI+RSA F D Sbjct: 58 --NSQGIAVYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R S + + K+++GA+E++ +++NL+D + K+ + G + ++ Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +E +KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] Length = 378 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVN 142 V+ V + ++ G AVHQG+ L+TA P L + LLM LD + Sbjct: 18 GVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMALDGIT 76 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI RSA A G++ +R S + +AK A+GALEH+P R+ NL AL + Sbjct: 77 DPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSL 136 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G++ IGL+S+ LEQ + ++ G+E GL T++ + + + G + Sbjct: 137 KQEGYRVIGLASEGSVSLEQADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRGATPS 196 Query: 263 LNVSNAAAVALYITQNH 279 LN S A A+ LY Sbjct: 197 LNASVATALLLYEVARR 213 >gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 258 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 8/257 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + NQK++ + G A P + Q+ ++ ++R Sbjct: 6 SNAKIKNVMQLNQKAKARREQGLFVAEGRKMFLEA---PESWVSQVFVSE-TVSRDGELM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143 + +P + V ++ QG+ L L S + + V + L+MVL+ + D Sbjct: 62 SQAEKYPCEIVKDSVFRQMCDT-KTPQGI-LTVLKLPSWSEEEVLAGKNPLVMVLEDLQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G ILR+ G+ TK + + +S G++ +P++ + ++ +K+ Sbjct: 120 PGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVEDVVSLEKKLK 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G ++ + +QE A +G EGKGL + E A + + M G +++L Sbjct: 180 EKGIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIRIPMCGKVESL 239 Query: 264 NVSNAAAVALYITQNHF 280 N + A+ + +Y Sbjct: 240 NAAMASGILMYEAARQR 256 >gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 253 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ +L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLY-VLGTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ I + + Q + + P+ P + + +VLD++ DP Sbjct: 66 KLKDDKVIQITD--AISQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ + +A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 181 GLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] Length = 246 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ V A+ + I ++ K L + N P VP + + ++ Sbjct: 6 IFGLRPVIEAIE-AGKTIDKIFIQKGLSGTLFTELNTLISQQKLPCSYVPVEKLQRLT-- 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P+ L+ + LL++LDH++D NIGAI+R+A Sbjct: 63 RGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSDVRNIGAIIRTAECTGVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S S + K+++GA+ +IP ++ NL D + + G + IG + + L Sbjct: 123 GIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQGSGIKVIGATEKASSLL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + +A+++GAE G+ + A L + G I +LNVS A LY Sbjct: 183 YQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSLNVSVACGAFLYEVVRQR 242 >gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] Length = 328 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83 + K+++ Q+++ + + L G H + AL + + N RL W Sbjct: 68 QNPLIKQLRKL-QRTKGRREQQLFLLEGTHLIEEALATQYPLLTVCYTAQWQNRYPRL-W 125 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 ++ + V + + I G+ TAP P A+ +Q+ + L+ V D Sbjct: 126 ESVCQAASRSEEVNERVLQAIA-TTVNPDGIIA-TAPRPQPQTVAI--TQIGLALETVQD 181 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A DG+ + + + ++++GA +P +LT+ L Sbjct: 182 PGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMAVGGDLTEQLTIAQ 241 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + D+ + ++LG EG GL A + + G +++L Sbjct: 242 QQGVQIVATLPDADLTYWELDFQQPTIVVLGNEGAGLSSSLTALADQHVQIPLSGGVESL 301 Query: 264 NVSNAAAVALYITQNH 279 NV+ AA+ LY Q Sbjct: 302 NVAICAALMLYEGQRQ 317 >gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] Length = 342 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 14/271 (5%) Query: 24 RRNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR 80 R+H Y + Q+ R E ++ G AL P ++ +N A Sbjct: 67 SRSHAAYARDAQASASPRRDVHAAEGNYIEGRRAAFEALRTGFPIKRALIAQGVENDPAV 126 Query: 81 LDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132 D A L VK+V +D I HQG+ LE L Sbjct: 127 RDLLAGLGEAGVSVKSVARAQLDAISS-HGAHQGIVLEVGKFPYADLADIIAAAGPADRP 185 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLDHV D N GAI+RSA G++ + S + K+++GA+ H+P ++ Sbjct: 186 ALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQV 245 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N+ AL+ + S GF G + ++ ++AL++G+EG G+ +T Sbjct: 246 PNIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFTT 305 Query: 253 HLHMPGIIKALNVS-NAAAVAL-YITQNHFA 281 L G ++LNV+ A A+ ++ +N A Sbjct: 306 KLPQRGATESLNVAQAATALCFEWLRRNQTA 336 >gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 251 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 14/243 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V A + + +L K+ H V V +D + + Sbjct: 6 IEGRNVVIEAFR-GGKTVDKLYLQDGLKDYTISTILREAKKHGTYVNFVSKDRLDTM-SE 63 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A +++ + + +LD + DPHN+GAI+R+A Sbjct: 64 TGKHQGVIAIVAAYEYASVEDILEKARQKNEPPFIFILDGIEDPHNLGAIIRTANLSGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A +A++++GA+ + P +++N+ +Q++ G + +K + Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMQELKDAGMWFVCADMGGEK-M 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279 I L++G EG G+ ++ +A + M G I +LN S A V Y + Sbjct: 183 YNIDLTGSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQR 242 Query: 280 FAK 282 AK Sbjct: 243 IAK 245 >gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] Length = 250 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 15/247 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQT 100 + E L G V A + + +L + L+ + +A P+ V Sbjct: 2 RDEQFTLIGRQPVLEAYRSGQ-TVDRLFVQEGLREGTLSSILREARR-QSTPLDFVKRSR 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ G E HQG+ A + + L++LD + DPHN+GAI+R+ Sbjct: 60 LDEMSGGE-NHQGVMAYLAAYRYYEISDMLSDAREKGEDPFLILLDGIEDPHNLGAIIRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G++ KR + +A AK+++GAL + +++NL+ ++++ G + Sbjct: 119 ANLAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEELKKEGIWFLCAD 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + Q + IAL++G EG+G+ +E+ A + M G I +LN S A V Sbjct: 179 MEGESMYRQRL-TGPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLA 237 Query: 274 YITQNHF 280 Y Sbjct: 238 YEIVRQR 244 >gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] Length = 248 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 121/279 (43%), Gaps = 33/279 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + I + K H K R + + + G H A Sbjct: 1 MNIITSKSNNVIKNAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + I Q+ + L R++ N V V + + ++ QG+ E Sbjct: 40 VENQAE-IRQVFVLEAYLDRVENIQN------VTVVTSEILS-LLADSKTPQGIVAEI-- 89 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL + + + L+ V DP N+G ++R+A A DG++ +K + S +S Sbjct: 90 LLEQPVLPYQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ + ++ + + S++ Q + D++ L++G EGKG Sbjct: 150 QGSHFHLPIWKLDR-EELFERASQSNLAVLATTLSEASIDYRQLPQIDQLILVMGNEGKG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ A + H+ MPG ++LNV+ AA + ++ +N Sbjct: 209 ISPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLRN 247 >gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 325 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 19/261 (7%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDAN 86 + + + R + ++ ++G + V A + +L + K+ Sbjct: 60 TQRAAARDRYRPNTAADSEIIFGRNPVVEA-AAAGVPLKRLFVSASLMKDERLSKVVQRG 118 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQL 134 ++ P +D+I HQG+A E A + + + L Sbjct: 119 AASGAKLQECSPADLDRITA-GGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPL 177 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+VLD V DPHN+GA LRSA AF DG+I + S S +A + K ++GA +P + N Sbjct: 178 LIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARN 237 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 LT ALQ++ + G IGL L + ++ + + ++ G+EGKG+ +ET + Sbjct: 238 LTHALQQLQAEGAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVS 297 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + + +++LN + A +ALY Sbjct: 298 IPIDKRMESLNAAVATGIALY 318 >gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 330 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 14/252 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPF--PVK 94 + R + G + V+ A I ++ + + RL PV Sbjct: 73 RRRFDVPEGYEIVCGRNAVAEA-ARAGVPISRVFMAVSAESDDRLGAVVRRATLIGCPVL 131 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNI 147 ++ + AVHQG+A+E L AV ++ LL+ LD V DPHN+ Sbjct: 132 ETTKLDLEALTD-GAVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVALDQVTDPHNL 190 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+LRS AF DG+I +R S +A + K ++GA +P R +NL L+ + G Sbjct: 191 GAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVARETNLVRTLETLKKEGC 250 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL + +E + + + L+ GAEG GL +ET +A + + +++LN + Sbjct: 251 FVVGLDGGGETLMEDLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPISQTVESLNAA 310 Query: 267 NAAAVALYITQN 278 A ++LY Sbjct: 311 VATGISLYEVDR 322 >gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] Length = 247 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 7/234 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + F+ G H V AL NP+RK+ ++ T++A + + N+ V + +DK Sbjct: 5 SFFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKELDKY 64 Query: 105 VGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 KE +H G E L P L + + LD V DP NIG+++RSA +F D Sbjct: 65 TSKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASFKID 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R+ PS+S ++ KSASG +EH+ ++SN+ L+ + F G + +K Sbjct: 125 GLIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGEKNF 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+ G+EG G++ T + A + + I++LN+SN+AA+ + Sbjct: 185 TDVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFH 238 >gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 251 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 23/272 (8%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 ++ S K+++ +L++ HR +K R Q L G H V A+N+ + + Sbjct: 2 EMQSTKNTYVKELKKLHR---------KKGRQDQQR--YLLEGFHLVEEAVNSQAEVVDI 50 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L++ + A W V V + + I ++ QG+ A P + +R Sbjct: 51 LISPRGAKEWAAWIEEQA--LDVTYVSEEVMAAI-SEQPTPQGIMAVVA---LPRVKEMR 104 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++LD+V DP N+G ++R+A A G+ + + + +S G+ HI Sbjct: 105 VKGKWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSMQGSHFHIEI- 163 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + D Q G G + + K D++ALI+G EG+G+ + Sbjct: 164 QNGTIQDICQVFKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGVAKEILAQTD 223 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ + G ++LNV AA + +Y HF+ Sbjct: 224 ANLYIPIYGKAESLNVGIAAGILMY----HFS 251 >gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 259 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 22/280 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN + E I S K+S + ++K+Q+ +K R S E L G H V A Sbjct: 1 MNFM-----ETIKSAKNSRV-------KAWQKLQT--KKGRQAS--ETYLLDGWHLVQEA 44 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K+ ++ T LA + LP PV + K+ QG+ E + Sbjct: 45 IQHDG-KLHAVMGTAEQLAEHQEE--LPLGVPVFEITDDIAKKLSDL-VTPQGIFAEVSL 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + LD + DP N+G ++R+A A G++ S ++ Sbjct: 101 PSATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALRAM 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ NL D G G D + + ALI+G EG+G Sbjct: 161 QGSQFHLT-TTTGNLADWTASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQG 219 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++P+ + T ++ + G ++LNV+ AA +A++ + Sbjct: 220 MQPELAKMTTQNLYIPISGQAESLNVAVAAGIAMFALKAR 259 >gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] Length = 252 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 15/246 (6%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTID 102 + LYG + V AL R + +L+ ++ +A + A P++ + Q +D Sbjct: 3 SELLYGRNAVREALRARRRTLRRLVVSRSVQESGIIADIIRLAEQA-GIPIERIERQILD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + + ++A HQG+ LET P LD R + LL++LDH+ DP N+G +LR+A Sbjct: 62 RQL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQDPQNLGTLLRTAE 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A C GII R + + + ++SGA+EH+ ++NL+ ++++ G +GL D Sbjct: 121 AVGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQHNGIWVVGLEQD 180 Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ++ N + L++GAEG G+ +E + L + G I +LN + A ++A+Y Sbjct: 181 ETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGSLNAAVAGSIAIY 240 Query: 275 ITQNHF 280 Sbjct: 241 HAWRQR 246 >gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str. Okra] Length = 259 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ + I + +G EG G+ + A + MPG Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 244 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 107/240 (44%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + + + L+++LD ++DP+N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ +I + +NL +A++ + + GF + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNLNQNSIDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei ATCC BAA-286] Length = 246 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 E ++G+ V A+ I +++ + L++ H V+ VP + +D Sbjct: 2 KEKEMIFGIRAVIEAIEAGKE-IDKVIIRRELQGDLSKELLALLKSHDVAVQRVPNERLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K HQG+ + + ++ + ++VLD + D N GAI R+ Sbjct: 61 RFTRK--NHQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGITDVRNFGAIARTCE 118 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + I+ + S + +A K+++GAL IP + NLT A+Q + + G + + S Sbjct: 119 VAGVNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQFLRNSGIKVVAASER 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + IA ++GAE G+ + A ++ + G I +LNVS AA V +Y Sbjct: 179 GADIYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYE 238 Query: 276 TQNH 279 Sbjct: 239 VIRQ 242 >gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] Length = 269 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 110/266 (41%), Gaps = 12/266 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84 ++ KK+Q +K++ + + + G+ S P ++ ++ +++ A Sbjct: 6 SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEV---PKSRLQKVYLSQSFARKEECEK 62 Query: 85 ANLPHPFPVKTVP-----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMV 137 L ++ I K + QG+ + + + LLM+ Sbjct: 63 ILLEKGISIEETEYVELVDDKIFKNLSDTVTPQGVLCLVKMENYTLSEILSGEENPLLMI 122 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + DP N+G ILR+ G+I ++ + + +S G++ +P I ++++ + Sbjct: 123 LEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEE 182 Query: 198 -ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L + G T + ++E A ++G EG GL + E+A ++ + M Sbjct: 183 EVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGLTEQLTESADTLIKIPM 242 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 G +++LN + A+ + +Y K Sbjct: 243 QGKVESLNAAMASGILMYEAYRQRRK 268 >gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] Length = 252 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + G H A N + + ++ L RL P+ V V P+ + ++ Sbjct: 30 RKSTYLIEGWHLFEEASANGA-VFEHIFVLEDFLERL------PNQEKVVVVTPEVLKEL 82 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E S + + +VL+ + DP N+G ++R+A A + + Sbjct: 83 SDSPSS-QGIVAEVQMDQSSLPETWQGP--YLVLEDIQDPGNLGTMIRTADAAAYQAVFI 139 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE 223 + + + ++ +S G+ H+P R ++ D L G + + + + + Sbjct: 140 SDKSADIYNSKTLRSMQGSHFHLPIYR-GSMADFLASFKQAGVRILATTLAEDSMDYRKI 198 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + AL++G EG+G+ +T + A + H+ MPG ++LNV+ AA + ++ Sbjct: 199 ERPESFALVMGNEGQGISEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMF 249 >gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] Length = 254 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ KI LK H K R +Y L G H + A Sbjct: 1 MKEIQSAKNPKIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + QG+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +L + + M GF G + L++ K + A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779] gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon aurantiacus ATCC 23779] Length = 246 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 13/242 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKI 104 LYG + V AL RK+ +LL A V V +DK Sbjct: 2 ELLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIARERRMQVAKVQRSELDKR 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+ALE +D + L+++ DH+ DP NIG ++R+A Sbjct: 62 TA-GANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLMRTAEIV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS- 216 GII R S S + + +++GA+EH+ +I+N+ ++ + + G+ D Sbjct: 121 GAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAGVEDDER 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ +AL++GAEG GL T+E + L M G + +LN + A ++ LY Sbjct: 181 AVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNAATAGSIILYHA 240 Query: 277 QN 278 Sbjct: 241 WR 242 >gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. Langeland] gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. 230613] Length = 259 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ + I + +G EG G+ + + MPG Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + + Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259 >gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] Length = 272 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 19/250 (7%) Query: 32 KMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 K + Q SRH + + + +G H V AAL NP R + ++ T+ AL +LD Sbjct: 14 KGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLD--- 70 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMV 137 LP P+ + ++V ++A HQGL +E PL L +DA L ++ Sbjct: 71 -LPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPL-VI 128 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHNIGA+LRSA AF I+T R+SP ES V+A+SASGALE +P++R+ NL+ Sbjct: 129 LDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNLSR 188 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL+++ + IGL D++ L + + K+AL+LG+EG G+R E +A L + Sbjct: 189 ALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLPIS 248 Query: 258 GIIKALNVSN 267 +++LN+SN Sbjct: 249 PRMESLNISN 258 >gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 256 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+EKI L AK R+ + L G H V A Sbjct: 1 MESISSPKNEKIKELVKLQTAKGRK-------------------KAGMYLLEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +I ++ T N L V V K+ E QG+ Sbjct: 42 IKERA-QIKLIVVTSNRLEDYKNLLA-QTDVQVLVVSQDVFHKLSMTETA-QGILAVVEI 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + + +VLD V DP N+G I+R+A A D ++ + + +S Sbjct: 99 VKQ---EILPHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239 G+ HIP + +NL + L + G Q + ++ +A+++G EG+G Sbjct: 156 QGSHFHIPVFQ-ANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATDVAIVVGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + A + + + G ++LNVS A+A+ +Y T Sbjct: 215 VSDDVIDLADVVVTIPIFGKAESLNVSIASALLMYKT 251 >gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++++ + G H V AL +P + Sbjct: 2 KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-TVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++L D D + + E Q A+ P + + Sbjct: 50 EILIKDETKIPSDLDV----SIQCYVLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + Q ++++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP Sbjct: 101 ASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPV 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R NL + ++ + G + G + + P + + ALI+G EG G+ E Sbjct: 161 VR-RNLHTYVDELKAEGVKVYGTALQNGAPYRDMSQAEFFALIVGNEGAGVNAALLEKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAA+ +Y + Sbjct: 220 LNLYVPLYGQAESLNVAIAAAILVYHLR 247 >gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] Length = 329 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 40/295 (13%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63 + A+ R H+ YK + +++ + S+ ++L + G + V AL Sbjct: 25 TPKAENRVYHKAYKAKKVADRRKMADPRLAARRRAAKFASESDDLVI-GRNAVLEALRCG 83 Query: 64 -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P+ ++ + R H + +D+I + + HQG+ ++ P Sbjct: 84 VPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQPF 142 Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L + L + LD V DP N+GA++RSA AF + Sbjct: 143 QYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +IGL + Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALV 262 Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E + D + ++LG+EG GL + T +A + M ++++LN S AA + LY Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317 >gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 249 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H++S A KIF K + PV VP + +D++ K Sbjct: 6 MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + LD + + L++LD + D N GAI R+A D Sbjct: 66 --NHQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 124 AIIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242 >gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] Length = 255 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 14/258 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ KK+ +KS+ + G P+ + + ++ L Sbjct: 7 SNEQIKKLIQLKEKSKVRKTTGTFTVEGKKMFVEI---PAEDLVSVYVSETFLKENGELV 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDH 140 + V Q KI QG+ S ++D + + ++VLD Sbjct: 64 KEKK---YQIVSDQVFKKISDT-VTPQGIVAVVK-QKSYSIDYIIEKRNKEKSCIVVLDR 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+ A GII +K + + + +S G++ +P+ + +L A+ Sbjct: 119 LQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVD 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G T + AL++G E +GL + A + + M G + Sbjct: 179 TLKDNGITTYAAHLKGE-LYNSGSLTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKV 237 Query: 261 KALNVSNAAAVALYITQN 278 ++LN + A A+ +Y Sbjct: 238 ESLNAAIATAILMYEAAR 255 >gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] Length = 292 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y ++ +S Q + AL + + L++ K A D Sbjct: 38 RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALAAGHQPVSFLMSEKWADDLADVLRAH 97 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P P + ++++ G LA P P ++ + + +L+ + D N+ Sbjct: 98 P-DTPAYVGSEEQLEQVTGFHLHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNV 156 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A + D ++ T R + + + G + +P+ R+ + LQ +H GF Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216 Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ + +E+ +++K+ALILG EG GL P+T + M + +LN Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 277 VAAASAVAFWETR 289 >gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 237 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGK 107 + +YGV+ V+ AL + ++ A K R + V + + ++ Sbjct: 1 MVVYGVNPVAEALRAGY-PVLKIYAEKTFRDREKILPFARKRGIKIVKVGKKKLFELAKT 59 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG+ +P+ + A+ + L+ LD + DPHN+GAI RSA AF GI Sbjct: 60 EK-HQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGI 118 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + + + K+++GA+ +IP+ +S+ AL+K G IGL S K + Sbjct: 119 VLPKDRSATITNTVVKASTGAVFYIPFSIVSSFRLALKKFKEAGGWLIGLES-GGKSISN 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L+ G+EGKGL T + + M G + +LNVSNA A+ LY+ +K Sbjct: 178 YSFPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQSK 237 >gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933] gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933] Length = 223 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 11/231 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 G H + A + +I +L T+ + + V + + + Sbjct: 2 EGFHLIEEA-ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTP 59 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ T D ++LD+V DP N+G ++R+A AF G++ K + Sbjct: 60 QGILAVMTLTSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADI 116 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIA 230 S + +S G+ H+P ++ +L D + M GF G + L++ K + A Sbjct: 117 YSTKVLRSMQGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFA 175 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I+G EG+G+ + ++ M G ++LNV AA + LY HF+ Sbjct: 176 IIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 222 >gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 261 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 105/253 (41%), Gaps = 5/253 (1%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPH 89 K + ++ ++ Q G+ TV A+ + + + T ++ R + Sbjct: 12 KAAAELKQKKYRQQQGLFLAEGLRTVEEAVRYGA--VQSIFYTAIEDDRTRAVLEEAAAK 69 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + V + + KI E QG+ + + + ++L+VLD V DP NIG Sbjct: 70 QIKLVCVSDKVLKKIADTE-TPQGIIAVCEMRSKRLDEFLASGKMLLVLDRVTDPGNIGT 128 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +LR+A A G++ + + + +++ G+L H+P + + +Q G++ Sbjct: 129 MLRTADAAGVGGLLLLQGCADIYAPKTVRASMGSLFHLPVLSGLSEELLVQAARKAGYEL 188 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D L + ++A ++G E G+ P A + M G ++LNV+ AA Sbjct: 189 LVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNVAMAA 248 Query: 270 AVALYITQNHFAK 282 + ++ K Sbjct: 249 GIVMFEALRQKLK 261 >gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] Length = 261 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 10/232 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++S + + G + V AL KIF +A V Sbjct: 8 RRSAPIEAESDGVIEGRNAVIEALRAGVTIDKIFIAKGETDATLGHIASTAREKGIVVVD 67 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 + +D + + HQG+ A T+D + L++V D ++DPHN+G Sbjct: 68 ADRRKLDGMSRTHS-HQGVIALCAVREYVTVDDILAIAQEKGEKPLIVVCDELSDPHNLG 126 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++R+A A G+I KR S +AV+AK+++GA+ H+P R+ NL AL+++ G Sbjct: 127 AVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVPNLVAALKELQQAGVW 186 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G +++ L Q A+++G+EG G+ E + M G I Sbjct: 187 VFGTAAEGTTSLYQADLKGPAAIVIGSEGDGMGRLVTENCDFTVSIPMFGKI 238 >gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] Length = 263 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 96/255 (37%), Gaps = 7/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K ++ +K + G+ V KI L+ T + Sbjct: 10 QNNVIKNIKELQKKKSARKSEGLFVIEGIRGVKEI--PSHVKIKYLITTSEVDEKELGAV 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + I ++ QG + + +VL+++ DP Sbjct: 68 KAEERL---EVSKEIYNSISDTQS-PQGAMAVAYMPTYDLVHFNIEAGHYLVLENLQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A AF G+ TK S + +S +L H+P + + + + Sbjct: 124 NLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIEEEIDTYMDFLKQK 183 Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + KP+ +K+A+I+G EG G+ + +E + + MPG ++LN Sbjct: 184 GVTLYTTALIPGAKPIYDVTFEEKVAIIIGNEGNGVSERVKEASDHTVIIPMPGAAESLN 243 Query: 265 VSNAAAVALYITQNH 279 + A ++ +Y Sbjct: 244 AAIATSICMYEITRQ 258 >gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101] Length = 257 Score = 212 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 116/257 (45%), Gaps = 9/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82 +N+ +K+++ +K ++ + + G+ V A+ + I ++ T++ + D Sbjct: 6 SKNNNLFKEIKRLKEK-KYRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPD 63 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + + + ++ E QG+ +++ +L++++D V Sbjct: 64 LFLKINENIKLIQMNEALLKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQ 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GI+ TK + +S G++ +IP + +L D ++ + Sbjct: 119 DPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G++ + S K +E K+ + +G EG G+ + + A + MPG ++ Sbjct: 178 KKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAES 237 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A ++ +Y Sbjct: 238 LNVAVATSIMIYEKIRQ 254 >gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] Length = 254 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 113/275 (41%), Gaps = 22/275 (8%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + +++ ++I S K+ + +K++ + ++ + + G H V AL + Sbjct: 1 MGEQRVKRIESPKNERV-------KQWKRLLTKKEREK----TGLFLVEGFHLVEEALKS 49 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + L+ ++ W + P+ V I ++ E QG+ L Sbjct: 50 --NIVELLIVSETKTIPTSWKVD---HIPMVIVTEAVIGELSDTE-TPQGIVAVCRHLQW 103 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 D Q + +D V DP N+G I+R+A A D ++ + +A + ++ G+ Sbjct: 104 NVADV----QTALFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGS 159 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L H P I+ ++ + + G S + + ALI+G EG G+ K Sbjct: 160 LFHFPVIK-GDIGQWIAHFQNRHIPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVNDK 218 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + T+ ++ + G ++LNV+ A + LY Q Sbjct: 219 WLQQTTANLYVPIYGQAESLNVAVATGILLYHLQK 253 >gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 244 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H + L + ++ L LD + V +D+++ Sbjct: 5 LIYGKHVIYELLKKHKNMVKEIWV--KNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNE 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +HQG+ + D + + L++VLD ++DP+N GAI+RS + DGII Sbjct: 63 LHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ I + +NL +A++ + + GF + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K +I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta thermophila DSM 6578] Length = 241 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 11/239 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++++ G V L +P ++ L T R + Q + + V Sbjct: 3 SVYITGKRAVETYLVDPGVKERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRYV 62 Query: 106 GKEAVHQGLALET-APLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G H+G ALE TL+ + + + LL+ LDH+ DPHN+GAILRSA F Sbjct: 63 G---THRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVGAILRSADQFGAL 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R + ++A ++KS+SGA +P + +NL AL + GF G + +P+ Sbjct: 120 GVIIPERRAVKDAASISKSSSGADAFVPVVVETNLRRALLHVKKAGFWVYGADMEG-QPV 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++ L+LGAEGKGL +E + + G + + NVS AA + +Y + Sbjct: 179 HEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVAAGILMYEVRRQ 237 >gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] Length = 329 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 21/294 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H AK + R K + R + + + G + V AL Sbjct: 37 TPKAEDRVYH--KAHRAK-QLAERSAAKRGPVTDQVRGRVKLTDETVSGRNPVLEALRAG 93 Query: 65 -SRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 K + R+ L PV +D++ G EAVHQG+ L+ P Sbjct: 94 IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152 Query: 122 LSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A +R LL+ LD + DP N+GAI+R+ AF DG+I +R Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKND 227 S +A ++++GA +P + NL L +H G+ +GL L + + Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVSLPGLALATE 272 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++GAEGKGL +E + + + +++LN S A ++LY A Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326 >gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801] gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801] Length = 260 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 16/273 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I SLK+ ++R+ HR ++ + L G H + A + L Sbjct: 2 ITSLKNPLVKQIRQLHR-----------TKGRREQNLLLFEGTHLLETACEVNC-SLDCL 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T +R W+ ++ V P+ + + +A P +S + Sbjct: 50 CYTAQWQSRYPQLWELATQKAQRIELVSPEVLQALATTVNPDGVIATAVNPKISKP--TI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++ ++L+ + DP N+G I+R+AVA DGI + ++ + +S++GA H+P Sbjct: 108 ADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPL 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +L+ ++ + G Q I + ++LG EG GL + A Sbjct: 168 IVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + I++LNV+ A A+ LY Q + Sbjct: 228 QTVSIPLGNTIESLNVAIACALLLYERQRQIRQ 260 >gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 257 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 115/271 (42%), Gaps = 22/271 (8%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 E+I S+ + H +D++K+Q+ + + L G H V A ++ R I Sbjct: 2 REQITSVHNQHV-------KDWRKLQTRKGRKKF----GQYLLDGWHLVQEASHSNQRLI 50 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + + + D A + V V P+ I I QG+ P ++ Sbjct: 51 ALIGSAEELSQHEDIVARFEN---VYEVTPEIIKHITETN-TPQGIVAVV---EMPDVNQ 103 Query: 129 VRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 V N + ++LD V DP N+G ++R+A A G++ +KR + + + +S G+ H Sbjct: 104 VTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFH 163 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + +++L + G + K AL++G EG+G+ + Sbjct: 164 LQLV-VADLKRWINDFQDDQHPVYGTQLNPLAKNFRHVQPGKDFALVMGNEGQGMAEELL 222 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 T+ ++ M G ++LNV+ +A + ++ Sbjct: 223 NQTTTNLYIPMRGNAESLNVAVSAGILMFQL 253 >gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] Length = 260 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 16/273 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I SLK+ ++R+ HR ++ + L G H + A + L Sbjct: 2 ITSLKNPLVKQIRQLHR-----------TKGRREQNLLLFEGTHLLETACEVNC-SLDCL 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T +R W+ ++ V P+ + + +A P +S + Sbjct: 50 CYTAQWQSRYPQLWELATQKAQRIELVSPEVLQALATTVNPDGVIATAVNPKISKP--TI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++ ++L+ + DP N+G I+R+AVA DGI + ++ + +S++GA H+P Sbjct: 108 ADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPL 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +L+ ++ + G Q I + ++LG EG GL + A Sbjct: 168 IVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + I++LNV+ A A+ LY Q + Sbjct: 228 QTVSIPLGNTIESLNVAIACALLLYERQRQMRQ 260 >gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 248 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++++ + G H V AL + Sbjct: 2 KRIDSAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKTEG-AVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++L D D + + E Q A+ P D++ Sbjct: 50 EILVKDEGKIPPDLDM----SIHCYILSEDAFSAVTETETPQQIAAVCRMPE-----DSL 100 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++D V DP N+G ++R+A A D ++ + + +SA G+ HIP Sbjct: 101 TSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFHIPI 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ NL ++++ + G + G S + ++ ALI+G EG G+ E Sbjct: 161 VK-RNLHVFIEELKASGVKVYGTSLQNGSAFQETAPIGSFALIVGNEGAGVDSAILEKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAAV LY + Sbjct: 220 LNLYVPLYGQAESLNVAIAAAVLLYHLR 247 >gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402 065] Length = 259 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD + +++D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL + ++ Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF+ + S D+ + I + +G EG G+ + + MPG Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + + Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259 >gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] Length = 266 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 3/259 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 L + K +K +H + + G+H V AL++ + K L Sbjct: 4 LSPQNARAKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECLAYDVDKGIPQEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + Q A+ +R + L++VLD + Sbjct: 63 RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGLVVVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+RSA A G++ + + + +S G+L H+P + +L L + Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE-GDLLSILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + ++ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V +Y Sbjct: 242 SLNAAMAASVLMYEALRQR 260 >gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 279 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 106/257 (41%), Gaps = 10/257 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANL 87 K + S K+R + + + GV VS P+ + ++ ++ + + Sbjct: 26 KHVISLLSKARERKKNKEYVVEGVRMVSEV---PADLLVKIYMSERFHSNNPEYVHELVK 82 Query: 88 PHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 ++ V D++ + QG+ S D + ++ LL++++++ DP Sbjct: 83 KQGISSDSIEIVADNVFDRM-SQTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDP 141 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR G+I + + +S G++ +P++ + + +DA+ + + Sbjct: 142 GNLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKN 201 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + D K E + A ++G EG GL + A ++ + M G +++LN Sbjct: 202 AGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTEDITKQADTLIRIPMQGEVESLN 261 Query: 265 VSNAAAVALYITQNHFA 281 + A + Y + Sbjct: 262 AAIACTILTYEAVRQRS 278 >gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.] Length = 247 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102 P L+G H ++A L + ++ A ++A R + ++ Sbjct: 2 PRLKLLHGFHAITARLRAFPATVNEVWYDPARQDARMRAFLHLAASANARLIAADASRLN 61 Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G E HQG+ L LD + LL+ LD V DPHN+GA LR A Sbjct: 62 ALSG-EKRHQGVVARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I +R + +A AK+A+GA E +PY+ + NL AL+ + + G Q IG + D+ Sbjct: 121 GAHAVIAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVIGTADDAT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + +AL++GAEG G+R T+E + + + G +++LNVS A+ + L+ Sbjct: 181 TSLFDIQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAV 240 Query: 278 NHFAK 282 K Sbjct: 241 RQRLK 245 >gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] Length = 268 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 17/276 (6%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 SE I S K+S LR +R ++ + L G ++ AL + I Sbjct: 2 SEVISSFKNSKIKFLRSLYR-----------KKYRRRNNKFILEGSRIITDALEAKA-DI 49 Query: 69 FQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 Q+ + L++ + A L + + ++KI A QG+ Sbjct: 50 DQIFYSAQFLSQQKNKELLAQLREVTEIIEITDSLLNKIADT-ATPQGIIAIVNQPEFEL 108 Query: 126 LDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 D + ++ L +++D + DP N+G ILR+A DG+ K + ++ G+L Sbjct: 109 EDFLIEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRATMGSL 168 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P +++ +D + Q + ++K + N AL++G EG G +P+T Sbjct: 169 FRVPVFGLNSPSDLTDILQMKDIQMVAADIEAKDYYYELDYNQPTALVIGNEGAGAQPET 228 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + I +LN + A+ + +Y Sbjct: 229 LKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQR 264 >gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 292 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y ++ +S Q + AL + + L++ K A D Sbjct: 38 RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALVAGHQPVSFLMSEKWADDLADVLRAH 97 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P P + ++++ G LA P P ++ + + +L+ + D N+ Sbjct: 98 P-DTPAYVGSEEQLEQVTGFHLHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTNV 156 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A + D ++ T R + + + G + +P+ R+ + LQ +H GF Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216 Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ + +E+ +++K+ALILG EG GL P+T + M + +LN Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 277 VAAASAVAFWETR 289 >gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 259 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 108/256 (42%), Gaps = 7/256 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ + ++K + G+ P+ +I L +++ + + + Sbjct: 7 NARVKQVMNLSKKVKARKTSGLFVTEGLRMFKEI---PADRIDSLFVSEDFI-KDEAHKR 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA--PLLSPTLDAVRNSQLLMVLDHVNDP 144 L +TV + K++ QG+ + L A LMVL+++ DP Sbjct: 63 LLAGMKYETVSREVF-KVMSDTQTPQGILALVRQHAFRTEDLLAAPGPAFLMVLENIQDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ G++ ++ + + + +S G++ +P++ +L +L+ + + Sbjct: 122 GNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTEDLPASLKALKA 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + + E+E ++G E GL +T A + + M G +++LN Sbjct: 182 GGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVKIPMKGKVESLN 241 Query: 265 VSNAAAVALYITQNHF 280 + AA+V ++ Sbjct: 242 AAVAASVLMFEAARQR 257 >gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella anatipestifer DSM 15868] gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella anatipestifer DSM 15868] Length = 258 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 11/257 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHP 90 M+ + + + F++G+ V A+ K+F + ++ H Sbjct: 1 MKQDYTSHQKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYVELKALLAKHK 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143 VP + ++ K HQG+ + + +++AV + L++LD + D Sbjct: 61 IRPNYVPIEKLNHFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N GAI R+A D II ++ + ++ K+++GAL ++ + NL + + Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++K + AL++G E KG+ + + L + G ++L Sbjct: 179 QSGVSVFSATEKAEKLIYDVDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238 Query: 264 NVSNAAAVALYITQNHF 280 NVS A LY Sbjct: 239 NVSVACGAILYEVVRQR 255 >gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 245 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTID 102 E ++G+ TV A+++ + I ++ K+ L + N + + VP + ++ Sbjct: 2 EETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLN 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ K HQG+ +P+ +L+ + + L ++LD + D N GAI+R+A Sbjct: 61 KL-SKNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII ++ S +A K+++GA+ +IP +++++ DA+ + ++ + I + Sbjct: 120 CCGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + IA+I+G E KG+ ++ A L M G I +LNVS A LY Sbjct: 180 TDDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYE 239 Query: 276 TQNHF 280 Sbjct: 240 AVRQR 244 >gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] Length = 231 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + L + G ++V A NN I ++ + +A FPV+ + + +++ Sbjct: 2 KKLIMCGKNSVVDAYNNNW-PIEKVFLLHEQNKKFFKNAK----FPVEVIRKEKMEEWT- 55 Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG + L+++ +L++VLDH+ DPHN+GAI+RSA A II Sbjct: 56 -NENHQGFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIIL 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223 + S ++ + K +SG I +IR+++++ + + + F + D K + Q Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQV 174 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++++ALI+G EG G+ T A ++ G +++LNVS A + L+ Sbjct: 175 SYSEQVALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFE 226 >gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 244 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 103/240 (42%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + + L+++LD ++D +N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ I + +NL +A++ + + F + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J] Length = 245 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + I + T+ + + P+ V P+ + ++ Sbjct: 23 RKNSYLIEGWHLFEEA-QKSKQPILSVFLTE------ELENFKNSECPIYIVTPEVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A SP + ++L+ V DP N+G ++R+A A DG+I Sbjct: 76 T-ESPSPQGIVAEIAMPDSPLP--LSQKGKYLLLEDVQDPGNLGTMIRTADAACFDGVIL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + +S G+ H+P R +++ Q + S G + + + + Sbjct: 133 SEKTVDLYNQKTLRSMQGSHFHLPVWR-TDVYSFCQTIQSNGVPVLATTLSKDSIDYKAL 191 Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ND L++G EG+G+ + A + H++MPG ++LNV+ AA + ++ Sbjct: 192 PQNDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGILIF 242 >gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] Length = 247 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + +YG+H ++ +L + S I ++ K A+ + PV VP + +++ Sbjct: 3 KQKLIYGIHALNESLASHS-DIDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ +P+ L+++ +++LD V D N GAI R+ Sbjct: 62 FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 I+ +R S S +A +++GAL I R +L A + + G Q +G D+ Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239 Query: 277 QNH 279 Sbjct: 240 VRQ 242 >gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] Length = 329 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 21/294 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H AK + R K S + R + + + G + V AL Sbjct: 37 TPKAEDRVYH--KAHRAK-QLAERSAAKRGSVTDQVRGRVKLTDETVSGRNPVLEALRAG 93 Query: 65 -SRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 K + R+ L PV +D++ G EAVHQG+ L+ P Sbjct: 94 IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152 Query: 122 LSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A +R LL+ LD + DP N+GAI+R+ AF DG+I +R Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKND 227 S +A ++++GA +P + NL L +H G+ +GL L + + Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVCLPGLALATE 272 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++GAEGKGL +E + + + +++LN S A ++LY A Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326 >gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] Length = 274 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 41/270 (15%) Query: 50 FLYGVHTVSAALNN--------------------------PSRKIFQLLATKNALARLDW 83 + G H + L PS ++ A + + Sbjct: 3 IITGFHAIEELLRAVEAQLEKNFSGTKSSQIGKKAGGGKTPSVRLKLFYAKQGPRVKKIL 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVG----KEAVHQGLAL--ETAPLLSPTLD--------AV 129 P++ +DK+V H+G+ L E SP L A Sbjct: 63 AQAEKLSVPIERRTDAELDKLVAPLPEYLQNHRGIILIDERPQEQSPKLSSDALLAELAS 122 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R ++VLD + DPHN GAI+RSA FS D ++ +R S + ++K ++GA +P Sbjct: 123 REKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWVPL 182 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +NL ++++ GF G + + PL DK LI+G+EG G+ + + Sbjct: 183 LYTANLVRTVEELKRNGFWVFGADAQGE-PLPHTKFPDKTLLIMGSEGSGISRLLKTSCD 241 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S + G + +LNVS AA + +Y + Sbjct: 242 SFTAIPTSGKLDSLNVSVAAGILMYEVRRQ 271 >gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 248 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 19/248 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G V AL I +L ++ L V+ VP + +D Sbjct: 3 DFIEGKRPVIEALRTGV-PIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61 Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + HQG+ + A + + L+++LDH+ D N+GA+ RS Sbjct: 62 SDRGS-HQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + KIAL++G E +G+ E + L + G + +LNV+ AA + Sbjct: 181 EHASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240 Query: 274 YI--TQNH 279 Y QN Sbjct: 241 YEWLRQNQ 248 >gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] Length = 263 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 17/246 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVP--PQTIDKI 104 ++ G V AL + I ++L N ++ F V+ VP + +D Sbjct: 3 DYIEGKRPVIEALRS-EMPIRRVLIADNLKRDGQVADILRKARKFDVEVVPVPRKELDAK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAILRS 153 + HQG+ ET P + + + L++VLDH+ D N+GAI RS Sbjct: 62 -SERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVLDHITDAGNLGAIARS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A GII + S S +A KS++G++ H+ +++NL L+++ GF G S Sbjct: 121 AEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAVLERLKKNGFWVAGAS 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + KIAL++G EG G+ Q+ + L G + +LNV+ A+ + Sbjct: 181 EQAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEGKVGSLNVAQASTAVM 240 Query: 274 YITQNH 279 Y Sbjct: 241 YEWLRQ 246 >gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 263 Score = 211 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 5/260 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L + K+ +K ++ + + G+H V AL + + ++ + ++ Sbjct: 4 LSAQNPRVKEWAGLLEK-KNRDKQGKYLIEGIHLVQEALQSRADVECVCYDLEHGIP-VE 61 Query: 83 WDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A V V I K ++ A+ + + L++VLD Sbjct: 62 LQAAASAGLDVDWIGVSAAVIAKCSDTKSPQPVFAVVRKDRGTVAPLLAKERSLVVVLDG 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+RSA A + DG+I + + ++ G+L H+P + ++L + L Sbjct: 122 VQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRATMGSLFHLPVV-HADLAEVLP 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + G S + + L+ G+EG GL P +E + M G Sbjct: 181 QAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEGGGLSPAVRELMDDGLLIPMRGQA 240 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AA+V LY Sbjct: 241 ESLNVAMAASVLLYEAMRQR 260 >gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] Length = 361 Score = 211 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQ 99 + F+ G + V AL L+A DA V V Sbjct: 108 RRGETDEFVVGRNAVVEALRAGVPASSLLIAGGLEFDERVADARRLAGRAGLTVVDVGRV 167 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQGLAL P D V L++ LD V DP N+GA++RS Sbjct: 168 ELDRLC-PNAPHQGLALSVPPFEYAHPDDVLAATQSAAPGLVVALDGVTDPRNLGAVVRS 226 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF +G++ +R + +A K+++GA +P R NLT L+ G +GL+ Sbjct: 227 AAAFGANGVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 286 Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D + ++ ++ D + L++G+EG+GL E + M G +++LN A +A Sbjct: 287 ADGEVDIDDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIA 346 Query: 273 L 273 L Sbjct: 347 L 347 >gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera] Length = 569 Score = 211 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 38/310 (12%) Query: 1 MNLISKKKSEKIF----SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF------ 50 M +I + +KI D R R + K +++ +K+ E+ Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKT-WKEATESTIPKIVGE 298 Query: 51 -LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTV 96 +YGV V AAL+ R+ + L + + L +K + Sbjct: 299 GIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDL 358 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++ +V HQGL L+ +PL L P L L + LD V DP N+GA Sbjct: 359 SKHDLN-MVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGA 417 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA F G++ + S S V++K+++G+LE + N+ L G+Q Sbjct: 418 IIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQV 477 Query: 210 IGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPG--IIKALN 264 +G S + PL + L+LG+EG GLRP + + T + + +P +++LN Sbjct: 478 LGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLN 537 Query: 265 VSNAAAVALY 274 VS AA V L+ Sbjct: 538 VSVAAGVLLH 547 >gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 256 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 118/243 (48%), Gaps = 13/243 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTI 101 S + +YG + V + L + L++ + + + + P + V + + Sbjct: 6 SGAGDDLVYGRNPVMSLLEGGGDCLKVLISRRRSDPVRERIVEICRARGIPFQEVDGKVL 65 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRN---------SQLLMVLDHVNDPHNIGAILR 152 D++VG + HQG+ +P+ L+ + + L+V+DHV DPHN+GA++R Sbjct: 66 DRMVGT-SSHQGVVARVSPVGILKLEDLYRLAGASDPVAAFALLVVDHVEDPHNLGAMIR 124 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIG 211 +A A ++ R + V+ K+++GA +P I + N++ A++++ G +G Sbjct: 125 TAEAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIRRVKEDLGLWAVG 184 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L + + + E +IAL++G+EGKGL + + M G +LNVS AA + Sbjct: 185 LEAQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGASGSLNVSVAAGI 244 Query: 272 ALY 274 +Y Sbjct: 245 VMY 247 >gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925] gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925] Length = 260 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 9/241 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPP 98 + +Q + G V AL + + +L +++A + D + V V Sbjct: 23 YRTQEAKFLVEGFRFVQEALKSTFEVPY-VLISEDANEKCDSFNIYELIQDNTKVYLVRD 81 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + ++ QG+ + ++ +++D + DP N+G I+RSA A Sbjct: 82 DILKEVCDTN-NPQGILAVV---NNKVMEIEDQEGFYVLVDRIQDPGNMGTIIRSANASG 137 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+ITTK + +S G++ IP + N + L+ + S GF+ + S D+K Sbjct: 138 ALGVITTKGTVDVYNDKTLRSTMGSIFKIPIVE-DNDFEVLKNLKSKGFKVVVSSLDTKN 196 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K + +G EG G+ E + MPG ++LN AA++ +Y Sbjct: 197 NFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVR 256 Query: 279 H 279 Sbjct: 257 Q 257 >gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] Length = 246 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 101/248 (40%), Gaps = 9/248 (3%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 + +KS + + G+ P +I ++ A+++ + + + + Sbjct: 2 NLIKKSGVRKERGLFVIEGIRMFVEI---PKDRIVKIYASESFAYD---NKEMLCDYRYE 55 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILR 152 V K++ QG+ L D + +L+VL+++ DP N+G I+R Sbjct: 56 IVADNVF-KMMSDTKTPQGILAVVKMLEYDIEDLFKKDKVPMLVVLENIQDPGNLGTIIR 114 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A GII + + + +S G+L +P++ ++ A+ + + Sbjct: 115 TAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSEDVVAAIHSLKQQNIKVFAA 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +E +A+++G EG GL + + A + M G +++LN + + AV Sbjct: 175 HLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVI 234 Query: 273 LYITQNHF 280 LY Sbjct: 235 LYEAMRQR 242 >gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681] gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681] Length = 262 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 99/262 (37%), Gaps = 6/262 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 + N+ K+ +K +H ++ + G+H V AL + K A L Sbjct: 4 ISPNNARVKEWAQLLEK-KHRARQHKYIVEGIHLVQEALRSDVAVETVAYDLDKGIPAEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139 + + P V I K Q + A+ L+MVLD Sbjct: 63 NGLNPVDQPVEWVPVSAAVIAKCTDT-KTPQSVFAIVRKEERSVFSALLEQPDALVMVLD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G I+RSA A G+I + + +S G+L H+P I +L + L Sbjct: 122 GVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIE-GSLEEFL 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S G + I S D+ L++G EG+G+ T + M G Sbjct: 181 PQAKSKGARLISTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQ 240 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LN + A+ V L+ Sbjct: 241 AESLNAAMASTVLLFEAMRQRN 262 >gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 258 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ + Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +++ T LA + + V + + I QG+A A S L A Sbjct: 50 EVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LD V DP N+G ++R+A A G++ +R + + +S G+ H+ Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L + S G + K D ALI+G EG+G+ Sbjct: 167 FE-GDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] Length = 263 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 100/257 (38%), Gaps = 6/257 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWD 84 + K + + +K + + + G+ P + ++ A+++ R D Sbjct: 7 NAKVKHLANLKRKRKLRDEEGVFLVEGIRMFRE---TPKMLLKEVYASESFYKKERRMTD 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVND 143 L + T+ V QG+ L +A + L+VL+ + D Sbjct: 64 EALKGSGAYLEILSDTVFGYVSDTKTPQGILCVVKQLDYRLEEAAAGRAAHLIVLNRLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GI+ + + +S G++ +P+ +L + ++ Sbjct: 124 PGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQDLKKDIGRLK 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++ ++ A ++G EG GL + + A + + M G +++L Sbjct: 184 DKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKIPMKGRVESL 243 Query: 264 NVSNAAAVALYITQNHF 280 N + A++V ++ Sbjct: 244 NAAIASSVLMFEAARQR 260 >gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] Length = 246 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 35/278 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + + K K R++ + + G H A Sbjct: 1 MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119 + N KI + + + R+ FP V V + + + QG+ E A Sbjct: 40 V-NAQAKIRHIFVLEEFVDRV-------QDFPQVYVVTAEILADLADS-KTPQGIVAELA 90 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + ++ L L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 91 FEEATIPSVLKGKYLF--LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRS 148 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGK 238 G+ H+P R+ D L + + +++ AL+LG EG+ Sbjct: 149 MQGSHFHLPIYRVK-TADFLDLAKQAQLPILATTLSKDSMDYRKLAPLSNFALVLGNEGQ 207 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ + E A + H+ M G ++LNV+ AA + ++ Sbjct: 208 GISSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245 >gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822] gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822] Length = 264 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 111/272 (40%), Gaps = 16/272 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I SL++ ++R+ HR ++ + + G H + A S + + Sbjct: 2 ITSLQNPLVKQMRKLHR-----------AKGRREQNLFLIEGTHLLETACKVKS-SLMVV 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T + R W+ + V P+ + + G+ A + +PT + + Sbjct: 50 CCTPDWQNRYPQLWELASQKAQRAEIVTPEILAAMT-TTVNPDGVVASAARISNPT-ELI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L +VL+ + DP N+G I+R+AVA +G+ + ++ + ++++G +P Sbjct: 108 SPLSLGLVLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVPM 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL ++ S Q I K + +++G EG GL + A Sbjct: 168 RVSQNLPQVIEDYKSQNVQVIATLPQGTKTYWEIDFTRPTLILMGNEGAGLSDELISLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G +++LNV+ A A+ LY + A Sbjct: 228 IGVNIPLGGGVESLNVAIATALLLYEAKRQRA 259 >gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10] gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10] Length = 266 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 3/259 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 L + K +K +H + + G+H V AL++ + K L Sbjct: 4 LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECVAYDVDKGIPQEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + Q A+ +R + +++VLD + Sbjct: 63 RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGMVVVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+RSA A G++ + + + +S G+L H+P + +L L + Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE-GDLLSILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + ++ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V +Y Sbjct: 242 SLNAAMAASVLMYEALRQR 260 >gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 262 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 9/243 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G P+ +I ++ A+++ A+ + + Sbjct: 6 SNAQIKELAKLQKKSRLRDEKGIFLVEGPRMTEEI---PAERIEKVYASES-FAKKNKEF 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHV 141 + PV+ + V QG+ L D + + + L+VLD++ Sbjct: 62 SEKLQAPVELLTDTVF-AYVSDTKTPQGILAIVKRLNYTMNDLMQVKNQKAPHLVVLDNL 120 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I R+A A GI+ +K + + +S GA+ +P++ + +L + +++ Sbjct: 121 QDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVEDLPEKIKE 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G +T + ++E A ++G EG GLR + + A + + M G + Sbjct: 181 LQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRIPMEGEAE 240 Query: 262 ALN 264 +LN Sbjct: 241 SLN 243 >gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 28/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I + ++ + K H K R + + GVH + A Sbjct: 1 MDPIESTSNPRVKTWKKLHSRKGRE-------------------KTGLFLVEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + ++W + P V + + +I E QG Sbjct: 42 LKAFIH-MKELVIDVDKEIPVEWKVS---NVPQVFVTNKVMKEICETE-TPQGFVAICE- 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + LD + DP N+GAI+R+A A +G++ + + + ++ Sbjct: 96 -LPDNKNVPLERGKFLFLDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRAT 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P R+ +L +A+Q G S D ALI+G EG G+ Sbjct: 155 QGSIFHLPVQRM-DLKEAVQICKEKNIPVFGTSLQGST-YNAIQPQDNFALIVGNEGSGV 212 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNVS A + LY + Sbjct: 213 EDTLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249 >gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3] Length = 257 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 114/272 (41%), Gaps = 22/272 (8%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + K ++I S K+ +D+KK+ + ++ + + G H AL + Sbjct: 7 RNKVKRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKG 55 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 L+ ++A+ A+L P + + E + + Sbjct: 56 TVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQR--IAAVCHMPEEK 108 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 D ++ L+++D V DP N+G ++R+A A D ++ + S +SA G+ Sbjct: 109 PDPLK---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHF 165 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 HIP ++ L + + ++ S G G + ++ + + ALI+G EG G+ Sbjct: 166 HIPILKRP-LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLL 224 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ + G ++LNV+ AAA+ +Y + Sbjct: 225 QKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256 >gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] Length = 261 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 16/270 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+++ ++R+ HR ++ + L L G H V A + L Sbjct: 2 ITSIRNPLIKQIRKLHR-----------TKGRREQNLLLLEGTHLVETAYQEGC-SLMTL 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T+ R W+ + V + + I G+ TA T + + Sbjct: 50 CYTEQWRDRYPQLWENVSKRVKRSELVSIEVLSNIT-TTVNPDGVVA-TALFQPRTEEEI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + QL +V++ + DP N+G I+R+A A D I + ++ + ++++G+ +P Sbjct: 108 TDFQLGLVIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQVPI 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+LT ++K + G I D+ + Q ++LG EG GL A Sbjct: 168 FVTSDLTTVIKKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + + +++LNV+ A A+ LY + Sbjct: 228 NLVSIPLGPGVESLNVAIATALLLYEAKRQ 257 >gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2] gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2] Length = 262 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 6/261 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 + N+ K+ +K +H ++ + G+H V AL + + K A L Sbjct: 4 ISPNNARVKEWSQLLEK-KHRTRQHKYIVEGIHLVQEALRSNAAVESVAYDLDKGIPAEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139 + + P V I K Q + A+ L+MVLD Sbjct: 63 NGLDSADQPVEWIPVSAAVIAKCTDT-KTPQSVFAIVRKEERSAFAALLEQPDALVMVLD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G I+RSA A G+I + + +S G+L H+P I +L + L Sbjct: 122 GVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIE-GSLEELL 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S G + + S D+ L++G EG+G+ T + M G Sbjct: 181 PQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESVFIPMQGQ 240 Query: 260 IKALNVSNAAAVALYITQNHF 280 ++LN + A+ V L+ Sbjct: 241 AESLNAAMASTVLLFEAMRQR 261 >gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] Length = 247 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 119/245 (48%), Gaps = 14/245 (5%) Query: 49 LFLYGVHTVSAAL--NNPSRKIFQLLAT--KNALARLDWDAN--LPHPFPVKTVPPQTID 102 ++L+G + + L ++ + + +++ T KN ++L A F ++ + P+ + Sbjct: 1 MYLHGRNVLRELLTVDSSALNVKRIVFTNQKNVDSQLLELAEESKARGFRIEEMAPEKLA 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + +E HQG+ ++ + + + + +++LD + DPHN+GAI+R++VA Sbjct: 61 NLC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDPHNLGAIIRTSVA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I T S + + K ++G IP I+I N+ + + GF + Sbjct: 120 VGADAIAITSSNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKEKGFWIYASDMEG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + ++K A++ G EGKG+R +E + + + M + +LNV+ +AA+ L+ Sbjct: 180 -IPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIILFDR 238 Query: 277 QNHFA 281 + A Sbjct: 239 RRQLA 243 >gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 287 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 7/258 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + + AL+ I L+ T++ + Sbjct: 18 YARLTEGQLLNRHEPEKGIFIAESPKVIERALDAGCVPISLLMETRHVGTQARDIIQRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G L P L D ++ + VL++V +P NIGA Sbjct: 78 EIPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205 + RSA A D ++ T S + + G + IP+ R S + ++ Sbjct: 138 VFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGM 197 Query: 206 GFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T ++ D ++ + DK+A+ILG EG GL +T + M + + Sbjct: 198 GFKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDS 257 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A+AV + F Sbjct: 258 LNVAAASAVMFWQIGRAF 275 >gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 20/270 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I SL++ H + +KK+Q+ + + + G H V AL + Sbjct: 2 EVITSLQNVHV-------KTWKKLQTRKGRQK----SGQYLVEGFHLVEEALAQDGL-VK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +++ TK+ + F V V + + QG+ +L P++ + Sbjct: 50 EVIYTKDTILPFSLTETA---FDVYEVTREV-SHAISDTKTDQGVFAVV-EMLEPSILML 104 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+V D V DP N+G ++R+A A D ++ + + + + +SA G+ HIP Sbjct: 105 FGKRFLLV-DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIPV 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 I+ +NL + + + G IG D LE + +AL++G EG G+ E Sbjct: 164 IQ-ANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGISAPIVERL 222 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G ++LNV+ AA + +Y + Sbjct: 223 SERVYIPIYGKSESLNVAVAAGILMYGIRK 252 >gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 372 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 103/291 (35%), Gaps = 52/291 (17%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPF 91 + R + G AL + +LL +N A L Sbjct: 79 RPRRERGVRAPMIEGRRACFEALEAH-LPLKKLLVQENMNAALQTADVERLITCARERGI 137 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129 + V +D + HQG+ E AP V Sbjct: 138 ACEYVKKSAMDSLSS-HGAHQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADASAA 196 Query: 130 ---------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + + L+++LDHV D N GAI+RSA +I Sbjct: 197 DASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANAR 256 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S K+++GA+ H+P +++ NL A+ ++ GF IG S +++ + K Sbjct: 257 CASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGK 316 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + LI+G+E G+ Q+ + L G I++LNV+ AA V Y Sbjct: 317 VCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 367 >gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 248 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPH-PFPVKTVPPQTID 102 ++ ++G++ V AL ++ K N A+L + VP + + Sbjct: 3 KKDYTVFGIYPVKEALAAEI-VFDKVYVQKDINNPKIEQIVADLEKLNVSISNVPEEKLY 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ + HQG+ T+P+ L+ V + L ++LD ++D N GAILR+A Sbjct: 62 KLT--KGNHQGIVALTSPIEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 +I K+ S K+++GA+ +IP I++ ++ DA+ + G TI + Sbjct: 120 CTGVHAVIVQKKGGAPVSGDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S+K + + +A+++G+EG+G+ + A L + G I +LNVS A LY Sbjct: 180 SEKTIYDQTLTTPVAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYE 239 Query: 276 TQNHF 280 Sbjct: 240 IVRQR 244 >gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 249 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 11/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++ F++G+ V A+ KIF A + + + VP + +++ Sbjct: 2 KDDFIFGLRPVIEAIEAGKTIDKIFVQNALQGPIYAELKAILAKNKIRPNYVPVEKLNRF 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG+ + + ++ + + L++LD + D N GAI R+A Sbjct: 62 TRK--NHQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFGAICRTAECV 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I ++ + ++ K+++GA+ +I + +NL + + G S ++ Sbjct: 120 GIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGISVYAASEKAQ 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + A+++G E G+ + A L + G ++LNVS A LY Sbjct: 180 KLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAV 239 Query: 278 NH 279 Sbjct: 240 RQ 241 >gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581] gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae] Length = 229 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 12/228 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+ G H++ A+ N + TK L N + VP ++++ + Sbjct: 4 FICGKHSLLEAIENNI-PFKFIYLTKKPTEALLAKQN------YQIVPMSFLNQLT--TS 54 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG + P+ L+ + L++LDH+ DP+N+GAI+RSA A II + Sbjct: 55 NHQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNK 114 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226 + + V K +SG I +I +++L+ A++K+ WGF + D S ++ N Sbjct: 115 RASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLN 174 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G+E KG+ + A + ++ M G +++LNVS A + L+ Sbjct: 175 TPAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222 >gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium johnsoniae UW101] Length = 244 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + ++ K L D VP + ++++ Sbjct: 7 IFGIRAIIEAIQAGQE-VDKVFIQKEISGELMKDLMKVMKRANINFSYVPVEKLNRLTPN 65 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG +P+ ++ A + L ++LD ++D N GAI+R+A + Sbjct: 66 --NHQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVN 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S + K+++GA+ ++P ++ ++ DA+ + G +T+ + + + + Sbjct: 124 GIIVQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY Sbjct: 184 YDLSLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM 15829] Length = 367 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 103/291 (35%), Gaps = 52/291 (17%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPF 91 + R + G AL + +LL +N A L Sbjct: 74 RPRRERGVRAPMIEGRRACFEALEAH-LPLKKLLVQENMNAALQTADVERLITCARERGI 132 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129 + V +D + HQG+ E AP V Sbjct: 133 ACEYVKKSAMDSLSS-HGAHQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADASAA 191 Query: 130 ---------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + + L+++LDHV D N GAI+RSA +I Sbjct: 192 DASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANAR 251 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S K+++GA+ H+P +++ NL A+ ++ GF IG S +++ + K Sbjct: 252 CASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGK 311 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + LI+G+E G+ Q+ + L G I++LNV+ AA V Y Sbjct: 312 VCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 362 >gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] Length = 324 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 14/255 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVK 94 +S Q + G ++V AL P+ ++ + + +A R+ + P+ Sbjct: 72 RSGTQRQRGTEVIGGRNSVLEALRARIPATTLY-VASRVDADDRIREILRIGTGRALPLI 130 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 +D++ AVHQG+ L P + L++ LD + DP N+ Sbjct: 131 ETTKTELDRLAD-GAVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRNL 189 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+LRSA AF G++ R S +A K+++GA +P R +NL ALQ+ + G Sbjct: 190 GAVLRSAGAFGAHGVLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAGC 249 Query: 208 QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL D + + + + + L++G+EGKGL +ET +A + + +++LN S Sbjct: 250 FVVGLDGDGPGMVGDLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNAS 309 Query: 267 NAAAVALYITQNHFA 281 AA++ALY A Sbjct: 310 VAASIALYEVARRRA 324 >gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 278 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +S+ + +S AL + + L +++ A Sbjct: 18 YTQLTHAQLRSQRDPEKGIFIAESGKVISCALKAGCQPLSCLTESRHLPALTQLLPPPWD 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ T P + ++ G E L P L + R+++ L+VL+++ D NIGA Sbjct: 78 NIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPEEICRSARRLVVLENITDSTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHS 204 I RSA A DG++ + + + G + IP+ + + + S Sbjct: 138 IFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHGDAFQWPQPGIATLRS 197 Query: 205 WGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF T ++ D+ +E + D K+A++LG+EG GL +T A + M + Sbjct: 198 LGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTARIPMYHGVD 257 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A AV + + Sbjct: 258 SLNVAAAGAVIFWQLRAR 275 >gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] Length = 258 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + NQK++ + G A P I ++ ++ L + Sbjct: 6 QNTQVKNIIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKIYVAESMLEDEEVMK 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144 + F V ++ + QG+ D ++ LLMVL+ + DP Sbjct: 63 KV-RRFSWDAVENGVFRQMCDTQ-TPQGILTVLRQPSYELEDLLKEEKPLLMVLEDLQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G I+R+ G+ TK + + ++ G++ IP+ + ++ QK+ Sbjct: 121 GNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVEDVVSLKQKLQG 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + K ++E D A ++G EGKGL + + A + + M G +++LN Sbjct: 181 RGIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIRIPMCGQVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 + AA + +Y Sbjct: 241 AAMAAGILMYEAARQR 256 >gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208] Length = 248 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 112/268 (41%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++ + + G H AL + Sbjct: 2 KRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKGTVKE 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ ++A+ A+L P + + E + + D + Sbjct: 51 ILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQR--IAAVCHMPEEKPDPL 103 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+++D V DP N+G ++R+A A D ++ + S +SA G+ HIP Sbjct: 104 K---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPI 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ L + + ++ S G G + ++ + + ALI+G EG G+ + Sbjct: 161 LKRP-LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAA+ +Y + Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 11/228 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G +++ A+ N I ++ TK + + NL + + V V +DK+ K Sbjct: 4 YICGKNSLLDAIKNNV-PIKKIYLTK-----IVPNLNL-NTYQVHIVEKSFLDKLA-KGI 55 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E + ++++ N + ++VLDH+ D HN+GAI+RSA A II K Sbjct: 56 NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + +SG I +I +++L +K+ F S S + KPL+Q + N Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIVFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + ++ R++ +N V V P+ + ++ Sbjct: 24 REQSYLIEGWHLFEEA-EKANAEFLNIFVLEDFADRVEHMSN------VTFVTPEVLKEL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + P + + +VL+ V DP N+G ++R+A A DG++ Sbjct: 77 TDS-KTPQGIIAEVAMPILPLANL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 + + + + +S G+ H+P R +N+ +A + + + G I + S + Sbjct: 134 SDKSADIYNQKTLRSMQGSHFHLPVWR-TNVYEACETLQNLGVPIIATTLSKDSVDYKTV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG G+ K A +AH+ MPG ++LNV+ A + L+ Sbjct: 193 KHDGNFALVMGNEGNGISNKMTNQADVLAHIIMPGQAESLNVAVATGIVLF 243 >gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 238 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 18/233 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 + GV+ V LNN + I +L K + + + Sbjct: 4 VIGVNPVLEVLNNREKTIEKLEVYKGVRGEILQKIQRLASERNVKIFYTNKKV------- 56 Query: 108 EAVHQGLALETAPLLS-----PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG + L+ A R+ +L++LD + DP N GA++RSA F D Sbjct: 57 -ENSQGFCIFLTDYDYYQDFDEFLERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVD 115 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R S + + K+++GA+E++P I+++NL++A++K+ + G + +++ Sbjct: 116 GILIPERNSVRINETVVKTSTGAIEYVPIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSC 175 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++E K+ LILG EG GLR K +E + + M G I +LNVS A + L Sbjct: 176 QEEQYPKKVVLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILL 228 >gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 253 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ I + + Q + + P+ P + + +VLD++ DP Sbjct: 66 KLKDDKVIQITD--AIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI ++ L A+ Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILA-AISSFKEN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + K L I ++AL++G E G ETA ++ + G ++LN Sbjct: 181 GIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 241 AAVAAGIMIY----HFS 253 >gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 258 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ + Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +++ T LA + + V + + I QG+A A S L A Sbjct: 50 EVVGTAEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LD V DP N+G ++R+A A G++ +R + + +S G+ H+ Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L + S G + K D ALI+G EG+G+ Sbjct: 167 FE-GDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ KI + K K +R + L G H V A Sbjct: 1 MEYIQSNQNTKIKAAKKLTVKKNQR-------------------KENTYLLEGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + I Q+ AT+ + F + + + + + QG+ Sbjct: 42 IQNKA-VIRQVFATEKYVDERALRGLYDDTFEI----APEVAQHLSETKAPQGIFAVVEM 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +P + + LL LD V DP NIG ++R+A A G++ + L +S Sbjct: 97 SETPMPEKLTGRYLL--LDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239 G+ H+P + NL D ++K +S G + + + K +ALILG EG G Sbjct: 155 QGSHFHLPIYQ-GNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T ++ +PG ++LNV+ AA + ++ Sbjct: 214 VAKDVLAATTQNLYIPIPGNAESLNVAVAAGILMF 248 >gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 258 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ +Q ++ Q L G H + A+ + Q+ AT + Sbjct: 4 SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNW-PLLQVCATPAWQNQHPQ 61 Query: 84 D-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P +TV + + G+ A P ++ LL+ ++ + Sbjct: 62 LWQQAIQAAPEQTVSDDLLAYLC-TTVNPDGVVAIAA--RQPQRQPPTSASLLIAVETLQ 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A DG+ T + + ++++G +P ++L L+ Sbjct: 119 DPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSW 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+Q + + L Q L+LG EG GL P A S + +++ Sbjct: 179 QQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ AAA+ LY + Sbjct: 239 LNVAIAAALLLYEARRQR 256 >gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 254 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + S + ++ K L ++ N VP + ++++ K Sbjct: 11 IFGLRAIIEAIESGS-TLNKIYLQKELRGSLFYELNQLIKEKGITTSLVPIEKLNRL-SK 68 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG + +P+ L+ + L ++LD ++D N GAI+R+A + Sbjct: 69 NGNHQGAVAQISPVEFYDLEELIEKTLESNKVPLFLLLDQLSDVRNFGAIIRTAECTGVN 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K S +A K+++GA IP ++ ++ DAL + + +T+ + ++ L Sbjct: 129 GIIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEIKTVAATEKTEDVL 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N IA+++G+E +G+ P + A L + G I +LNVS A LY T Sbjct: 189 YDINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSVACGAFLYETIRQR 248 >gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 258 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 17/272 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +D+KK+Q+ + Q L G H V A + ++ Sbjct: 2 EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +++ T LA + + V + + I QG+A A S L A Sbjct: 50 EVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LD V DP N+G ++R+A A G++ +R + + +S G+ H+ Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L + S T G + K D ALI+G EG+G+ Sbjct: 167 FE-GDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] Length = 257 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 98/257 (38%), Gaps = 10/257 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + + + ++ + + + G P +I + T+ + + Sbjct: 6 SNAKVKNIMNLKKSAKARKKEKCFLVEGPRMFFEI---PKDRIEECYLTEEFEDKYAEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143 N H + + + K + QG+ + + + +L+++ D Sbjct: 63 NGWH----YELISENVCKHLSDTKTPQGVIAVVRRTEPSIEELLHKEKNPCFFLLENLQD 118 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A GII + + + +S GA+ +P++ +L + + ++ Sbjct: 119 PGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRSTMGAIFRVPFVIADSLPEVIFQLK 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G ++ D A ++G EG GL + A + M G +++L Sbjct: 179 QNGVSVYAGHLKGDV-FYKQDYRDGSAFLIGNEGNGLTDEITALADYKIKIPMKGKVESL 237 Query: 264 NVSNAAAVALYITQNHF 280 N + +A + +Y T Sbjct: 238 NAAVSATILMYETMRQR 254 >gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 271 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 8/263 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS N++ K + K ++ + + G+ V A+ ++ ++N Sbjct: 9 DSMEIITSLNNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEAVKLKYSEVVC-FISEN 66 Query: 77 ALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRN 131 + + + + + V + ++K+ G + QG+ ++ +N Sbjct: 67 VTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHT-QGIVAIVKKRCINLGTLKYKN 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ + LD V DP N+G I+R+A A D +I +K + S +S+ G++ IP + Sbjct: 126 NERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVT 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + ++ + +G S +P Q + I G EG G+ K + Sbjct: 186 DVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGISQKILNISDKK 245 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 ++ + +++LNVS A AV L+ Sbjct: 246 IYIPLKSNVESLNVSIATAVILF 268 >gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4] gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4] Length = 261 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI K+E++ +++KK+QS R + + G H + A Sbjct: 7 MELILSTKNERV---------------KNWKKLQS----RRGRQKAGAYLIEGFHLIEEA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N + I +++ ++ + + + + T I K++ + QG+ Sbjct: 48 LKNHA-IILEIMISEEVVVGDIPEFDEAKQVEIST----EIAKLLSETETSQGIFAVVKK 102 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + LD ++ + LD+V DP N+G ++R+A A G++ K ++ + +S Sbjct: 103 I--DQLDKPILTKPFLFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSM 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKG 239 G+ H+P + +L + F G + + +EI+ + L++G EG G Sbjct: 161 QGSHFHLPVYQ-GDLNEWFDLFFELEFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNG 219 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + T ++ + G ++LNV+ AA + ++ Sbjct: 220 MAAELLKRTTKNLYIPIVGQAESLNVAVAAGILMF 254 >gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] Length = 258 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 31/280 (11%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ K+++ I + H +K RR R + + G H V AL Sbjct: 7 ITSKQNQSIKEWRKLHTSKGRRKARAF-------------------LIEGDHLVQEALK- 46 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + L+AT L + + H P + + + + QG+ Sbjct: 47 AGLPLQALMATPAYLGDHEELFDQDHCDTYLLTP--GLAQYLSQTQQDQGVFAVVESKQK 104 Query: 124 P-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P +LD + L++LD + DP N+G ++R+A A D +I + + + ++ G Sbjct: 105 PASLD--PSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQG 162 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 ++ H+P I +L A+ + + + + + ++ +DK+ALI+G EG G+ Sbjct: 163 SIWHLPVIHY-DLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVA 221 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A ++ M G ++LNV+ A + L+ HF Sbjct: 222 GDLIQAADHSVYIPMLGQAESLNVAVATGILLF----HFN 257 >gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] Length = 246 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 36/282 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I +++KI + H N +D KKMQ + G H V A Sbjct: 1 MEIIESIQNQKIKQIAKLH------NRKDRKKMQ-------------QFIIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +N+ L + L +A + + + +K+ EA QG+ Sbjct: 42 VNSNIDIEMILTVNPDRLT----EAMVAGSKQQYEITFKVAEKLSQTEA-PQGIYAVCNM 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + R ++ LD + DP N+G I+R+A A D +I K + + +++ Sbjct: 97 KDGKDAELNR----VIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I + D + + G S + + ++ I +D ++LG EG+G+ Sbjct: 153 QGSVFHIPVIEM----DFDEVSSKFNGTIYGTSLEEARDYKEVIPSDNFMIVLGNEGQGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 P+ ++ + G ++LNV+ A + +Y HF K Sbjct: 209 NPEILSATDENLYIPIYGRAESLNVAVCAGILMY----HFVK 246 >gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] Length = 258 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 25/252 (9%) Query: 51 LY-GVHTVSAALN-----NPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102 +Y G H V + P ++ +K R+ +L F V V + +D Sbjct: 5 IYTGFHAVEEKVKLYSVSKPKEISLKIFYSKPG-PRIKKIISLAKDSNFEVSLVNEKELD 63 Query: 103 KIVG----KEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 +V H+G+ L L + + +++VLD V DPHN+GA Sbjct: 64 SMVSSLPETARDHRGIILLVEGEKENSKNQIQLEQWITCCPENAVVIVLDSVTDPHNVGA 123 Query: 150 ILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 ILRS F ++ S + + ++A++++GA + ++ NL A+Q + S GF Sbjct: 124 ILRSCDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAKVPNLVRAVQILKSAGF 183 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + L + K +I+G+EG G+ QE + + G I +LNVS Sbjct: 184 WIYGADA-GGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSV 242 Query: 268 AAAVALYITQNH 279 AA V LY Sbjct: 243 AAGVLLYEAYRQ 254 >gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 225 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 11/228 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G +++ A+ N I ++ TK + + NL + + V V +DK+ K Sbjct: 4 YICGKNSLLDAIKNNV-PIKKIYLTK-----IVPNLNL-NTYQVHIVEKSFLDKLA-KGI 55 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E + ++++ N + ++VLDH+ D HN+GAI+RSA A II K Sbjct: 56 NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + +SG I +I +++L +K+ F + S + KPL+Q + N Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIVFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68] gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68] gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] Length = 254 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + E L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + V + +D + QG+ A Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAANKEISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TAEGTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +LT+ + M GF G + L++ K+D A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33] gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33] gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1] gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14] Length = 246 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K + + +K K R + + + G H + A Sbjct: 1 MEIIRSKANHLVKQVKKLQQKKYRTS---------------------SYLIEGWHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + I + + ++ AN V V P+ + ++ QG+ + A Sbjct: 40 MEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQELADS-KTPQGVVAQLAL 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +VL+ V DP N+G ++R+A A DG+ + + + + + +S Sbjct: 92 PSQRLPETLDGK--FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+ ++ L + S Q + + S+ +EI AL++G EG+G Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIQILATTLSSQSVDYKEITPHSSFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A + H+ MPG ++LNV+ AA + L+ Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243 >gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] Length = 232 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 19/231 (8%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G++ V L + I +L K + + + + + Sbjct: 6 GINPVIEILKS-QTTIEKLEIYKGINKGHIKQLLELASKRNLKIFYTDKR--------DD 56 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+ + + +++ +++LD + DP N GAI+RS F GI Sbjct: 57 NSQGVVAYISEYDYYIDFSAFLEKELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGI 116 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I R + + + KS++GA+EH+ ++++N+ D+++K+ +G+ G ++ +K + Sbjct: 117 IMQDRNNVKVTETVVKSSTGAIEHVDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYE 176 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E K AL+LG+EGKG+R + +E+ S+ +H+ G I +LNVS AA + L Sbjct: 177 EKYPKKKALVLGSEGKGMRKRVRESCDSILKIHLKGEINSLNVSVAAGILL 227 >gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL S4-171] Length = 190 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRS 153 I+K+V VHQG+A + A LD + N+ ++LD + DPHN+G+I+R+ Sbjct: 1 IEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMRT 58 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 59 ADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTD 118 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ L Sbjct: 119 AKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLL 178 Query: 274 YITQN 278 Y Sbjct: 179 YEVYR 183 >gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 254 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 11/238 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F+ G +V AL + + ++ + D + H + I Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEIEYIVMGEGVKIDIPKGDFEIAH-------TTERIF 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K + Q + ++ + ++ D++ DP N+G I+R+A AF I Sbjct: 76 KKLSDTVTPQMVMAIIKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I ++ L K+ G + ++K + + Sbjct: 136 FTINNCVDIFNPKVLRASMGSIFHIPVIATTS--QILLKLKRRGIKVFATHLKAQKLVHE 193 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DKIA +LG E KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 194 CNISDKIAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249 >gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 257 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 112/272 (41%), Gaps = 18/272 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +++KK+Q+ + Q L G H V+ A+ ++ Sbjct: 2 EELTSVHNQHV-------KNWKKLQT----KKFRRQSGEYLLDGWHLVNEAVK-AGNQLR 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL+ T + LA + V P+ + + QG+A + + A Sbjct: 50 QLIGTADQLA--AHQDLVARAAEAYVVTPEIMQHVTDT-VTPQGIAAVVDLPDAHRVPAN 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD V DP N+G ++R+A A G++ R + + +S G+ H+ Sbjct: 107 IQGA-WLLLDRVQDPGNVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTL 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L +Q G G + + K ALI+G EG+G+ + Sbjct: 166 LE-GDLHKWIQDFKQLGAPVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKET 224 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T+ ++ M G ++LNV+ +A + ++ Sbjct: 225 TANLYIPMRGDAESLNVAVSAGILMFQLNREL 256 >gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 12/238 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + F+ G+++V AL++ + + ++ D + F + + + Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFKLIRIANKLFK 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 KI Q + + D ++ + ++ D+V DP N+G I+R+A AF D + Sbjct: 76 KISDT-VTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAV 134 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I +N + L K+ G + +K + + Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFVHE 192 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ILG E +G+ + + M G ++LNVS AAA+ LY +Q Sbjct: 193 VEIDKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248 >gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 249 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 18/246 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103 +YG+H + A+ + R I +L + + P+ VP + Sbjct: 6 IIYGIHPLIEAIQS-KRSISKLFFQIGWKKKCNPYYKKLISLSKRENIPIHIVPKNKFHQ 64 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ +P+ + +++ + + LL++LD + D N G+I+R+A Sbjct: 65 L--NNKNHQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTAAC 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II +Y+ + K++SGAL +P + N+ ++ + G + + + S Sbjct: 123 AGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATEKS 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI- 275 + + A+ILG E G+ PK E A + I +LNVS A + LY Sbjct: 183 NIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEV 242 Query: 276 -TQNHF 280 Q F Sbjct: 243 FRQREF 248 >gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 11/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDK 103 + GVH V+AA++ ++ QL + A H + I++ Sbjct: 3 EDWAIGVHAVAAAIDAG--EVEQLWVAREREEDRRIREVVAAAELHGIRPRWAATAEINR 60 Query: 104 IVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + G HQGL AP L+ L+ + LL++LD + DPHN+GA LRSA A Sbjct: 61 L-GGGPQHQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGA 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 + ++ K ++ +A + K+A+GA +P + ++NL ++ + +G+ GL+ ++ + Sbjct: 120 NAVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQD 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL+LG+E KGLR +E + H+ M G +++LNVS A A+AL+ + Sbjct: 180 LYEADLRGPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALFEARRQ 239 Query: 280 F 280 Sbjct: 240 R 240 >gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] Length = 252 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 110/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A+ P V + + + QG+ Sbjct: 46 VQAGV-TIEKIFALENYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGEADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+S+ L+K G + + +E+ + L++G EG+G Sbjct: 156 QGSHFHLPIYRMSSQA-LLEKAKKAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 215 ISSLMAESADQLVHISMKGQAESLNVAVAAGILIF 249 >gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] Length = 275 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYTPLSLLMERKQITGPAADILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T +T+ + G E L PL + RN++ + VL+ + D N+GA Sbjct: 78 DAPVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204 I RSA A + D ++ T + + G + +P+ +I + + ++HS Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHS 197 Query: 205 WGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD ++ + K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A+AVA + N Sbjct: 258 SLNVAAASAVAFWQLGNR 275 >gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 262 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 16/270 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+++ ++R+ HR ++ + L L G H V A + L Sbjct: 2 ITSIRNPLIKQIRKLHR-----------TKGRREHNLLLLEGTHLVETAYKENC-SLITL 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T+ AR W++ + V + + G+ TA T + + Sbjct: 50 CYTEEWQARYPQLWESVSKRVKRSELVSADVLASMT-TTVNPDGVVA-TARFQPRTEEEI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +L ++++ + DP N+G I+R+A A D I + ++ + ++++GA +P Sbjct: 108 TDFRLGLIIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQVPI 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+LT ++K + G + ++ + Q ++LG EG GL A Sbjct: 168 FVTSDLTTVIKKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALAD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +++LNV+ A A+ LY + Sbjct: 228 ELVSIPLSQGVESLNVAIATALLLYEAKRQ 257 >gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542] gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542] Length = 339 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 12/261 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP-- 88 + + + + + + G + V AL + T+ A R + Sbjct: 77 RPSGRGKGPKKSGSATHEMVSGRNAVLEALRARIPVTTVYIGTRLEADDRTREILQIASG 136 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHV 141 + + V +D++ ++VHQG+A++ P + + L++ LD V Sbjct: 137 RGYNLLEVTKPELDRLTD-DSVHQGVAIQVPPYEYRDPEDLLDIAAELEQPALIVALDGV 195 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA+LRSA AF G++ +R S +A K ++GA +P R +NLT L + Sbjct: 196 TDPRNLGAVLRSAGAFGAHGVLVPERRSAGVTASAWKVSAGAAARVPVARATNLTRTLLE 255 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 S G +GL + + + D I L++G+EGKGL +ET ++A + + + Sbjct: 256 YKSAGCFIVGLDGGGEVSVGDLAFSVDPIVLVVGSEGKGLSRLVRETCDAIASIPIASAV 315 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN AA +ALY A Sbjct: 316 ESLNAGVAAGIALYEVAKVRA 336 >gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 253 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 12/238 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + F+ G+++V AL++ + + ++ D + F + + + Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFMLIRIANKLFK 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 KI Q + + D ++ + ++ D+V DP N+G I+R+A AF D + Sbjct: 76 KISDT-VTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAV 134 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I +N + L K+ G + +K + + Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFVHE 192 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ILG E +G+ + + M G ++LNVS AAA+ LY +Q Sbjct: 193 VEIDKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248 >gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] Length = 246 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 17/246 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTID 102 F++GV +V+ + N + I +L + L R + PV VP ++ Sbjct: 4 DFVFGVQSVTETI-NAGKPIDKLFIQRE-LGRNSPKVAYILEEAKKREVPVAKVPLDKLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 +I K HQG+ + + L + + L+++LD + D N GAI R+A Sbjct: 62 RITRK--NHQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 I+ R S S+ K++SGAL ++P R +NL ++ + G Q + + Sbjct: 120 CAGIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + A+++G+E G+ A +A + + G I +LNVS A AV +Y Sbjct: 180 TSETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 AVRQRS 245 >gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 251 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+H V A+ KIF K AL + P VP + + ++ Sbjct: 11 IFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSYVPIEKLQRLT--R 68 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ L+ + L ++LDH++D N+GAI+R+A +G Sbjct: 69 GNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRTAECTGVNG 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ K+ S S + K+++GA+ ++P ++ NL DA+ + G + +G + + L Sbjct: 129 ILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGATEKASSLLY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ +A+++GAE G+ + A L + G +LNVS A LY Sbjct: 189 DFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFLYEVVRQR 247 >gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 11/223 (4%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V AL+ P KI+ ++ + + + PV + P++ + + + Sbjct: 11 IEGRNAVLEALSASMPLNKIYIKKGERHGVMQKIRELARSSGIPVVELDPKSFEHMA-RT 69 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+ ++P ++D + R + + VL+ + DP N+G+ILR+A G Sbjct: 70 RNPQGVIALSSPKEYVSVDDILETAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHG 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + + + K + GA ++ R++N+ L+ + G +G D + P Sbjct: 130 VIIPKRRACGVTPAVVKVSEGAAGYVNVARVTNIASTLECLKEKGLWVVGADMDGE-PYH 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + +AL++G E KGL +E + L M G + +LN Sbjct: 189 RVDLTGPVALVIGGEDKGLGRLVREKCDLLVKLPMRGHVPSLN 231 >gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] Length = 246 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 11/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++G+H+V AL KI+ A + R PV VP + +++ Sbjct: 3 KEKIIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIPVLEVPAERLNRF 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG A + L+ + L+++L+ V D N GAI RSA Sbjct: 63 T--RGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAECA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ +R S S SA +++GAL IP R+ +++ A+ + G Q + + ++ Sbjct: 121 GAHALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKAE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+E +G+ P+ AT + G I +LNVS AA + L+ + Sbjct: 181 NTYYTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESL 240 Query: 278 NH 279 Sbjct: 241 RQ 242 >gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] Length = 266 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 105/261 (40%), Gaps = 7/261 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLD 82 ++ + ++ ++ R + GV V AL + I+ +N + Sbjct: 7 DNPRIRYLKHLAKR-RFRETEGKFIIEGVRFVEEALASAMSVEAVIYSAKLFQNNRGKEL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDH 140 + P V ++ + A QG+ + + + + QLL+++D Sbjct: 66 LECIYKSNVPFWEVTEPILESLSDT-ATPQGVVAVIKSVPTGLQEILTRVKKQLLVLVDG 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R++ A D +I ++ + ++ G+L H+P I A + Sbjct: 125 IQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEPVQAAE 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + + +P+ +AL++G+E G+ + ++ MPG Sbjct: 185 LLLQAGIRLVVGMPQDCQPVYSVDLTGPVALVVGSEANGVSEGLKRLPAIPVNIPMPGHA 244 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN + AAA+ LY + Sbjct: 245 ESLNAAIAAAIMLYEAVRQRS 265 >gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 260 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 8/257 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DW 83 + K+M+ +Q ++ + L G H + A+ + + T A+ DW Sbjct: 6 QNPLIKQMRKLHQ-GKYRRAQQQFLLEGTHLLLEAVETGY-PLEVICFTPQWQAKQAPDW 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A L ++ V Q + I G+ P L+ L + ++ + D Sbjct: 64 LAQLEQLTRLEVVSEQVLAAIA-TTVNPDGVVALAPFQPRPPLEI---HHLGLAVETLQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A +G++ + E+ + ++ +G +P + LQ Sbjct: 120 PGNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDFQAELQHYR 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + ++ +LG EG GL A + + +++L Sbjct: 180 QQGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIPLQPGVESL 239 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ LY Q Sbjct: 240 NVAIAAALLLYEAQRQR 256 >gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] Length = 261 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 108/254 (42%), Gaps = 8/254 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N++ K + K ++ + + G+ V A+ ++ ++N + Sbjct: 8 NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEAVKLKYSEVVC-FISENVTEKERIQN 65 Query: 86 NLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDH 140 + + + + V + ++K+ G + QG+ ++ +N++ + LD Sbjct: 66 LIKNGNLLKWKILFVSEKVMNKLSGTKHT-QGIVAIVKKRCINLGTLKYKNNERYVFLDE 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A D +I +K + S +S+ G++ IP + + + ++ Sbjct: 125 VQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVSTDELIK 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + +G S +P Q + I G EG G+ K + ++ + + Sbjct: 185 WKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGVSQKILNISDKKIYIPLKSNV 244 Query: 261 KALNVSNAAAVALY 274 ++LNVS A AV L+ Sbjct: 245 ESLNVSIATAVILF 258 >gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] Length = 255 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 123/277 (44%), Gaps = 24/277 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ ++ + + +Q+ + + L G H V A Sbjct: 1 MEIITSNQNSRV---------------KIWTSLQTLKGREK----SGTYMLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + I ++AT+ + + D +P P V + + + + K QG+ +T+ Sbjct: 42 LNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ ++LD + DP N+G ++R+A A G+ +K + + + ++ Sbjct: 98 PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ ++ +L D + K+ + + G S++ + + ALILG EG+G Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P+ Q + H++ G ++LNV+ A + ++ Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFAL 254 >gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter thermophilus TK-6] Length = 240 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG + V AL + L+A + ++ VP I+++ G + Sbjct: 1 MIVYGKNPVIEALRSGKDIEKVLVAHDSHPPYQVAKLCKERGVKIQKVPRAKIEELAGTK 60 Query: 109 AVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 QG+ +P+ + DA++ + ++VLDH+ DP N+G +LR+ G + Sbjct: 61 KT-QGILAIISPINYVSSNELFKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGAL 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 S + V+ K+++G++ H+ ++ +L+ AL+ G I + K Sbjct: 120 LPTHRSSPINQVVVKASAGSVFHLKISKVPSLSKALKDFKKQGGWVISVERGGKDIRYTS 179 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 I AL+LG+EG+G+ E + + + M G I +LNVS+A A+A++ Sbjct: 180 IPL-PCALVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWE 230 >gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] Length = 169 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 1/147 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LL++LD + DPHN+G+ILR+A A + G+I K + + V+AK+A+GA+EH+P Sbjct: 19 EENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPI 78 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL+ L K+ GF T G + P + KIALI+G EGKG+ ++ Sbjct: 79 ARVTNLSQTLDKLKDEGFWTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVD 137 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 M + M G +++LN S AAA+ +Y Sbjct: 138 EMITIPMNGHVQSLNASVAAAILMYEV 164 >gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] Length = 278 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 33/285 (11%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 N+I+ + + I +K K R H + + G+ V + Sbjct: 4 NMITSETNSIIKYVKSLQLKKNRMKHMQFT-------------------VEGLRIVEECV 44 Query: 62 NNPSRKIF-----QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + + ++ +T+ A LD A + + V Q KI E QG+ Sbjct: 45 KHNGDIAYIIYSEEIYSTQGAEKLLDKIALA--GYTLYEVSSQLFSKISTTE-NPQGIMA 101 Query: 117 ETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 + + +L+ +++ + ++LD + DP N+G I+R+A + + D +I TK Sbjct: 102 VVH-MKNRSLEEIKSQKGKELFFVILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPY 160 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 ++ ++ GA+ H+P I+ + L + + I D+ K N I +I Sbjct: 161 NSKTLRATMGAIFHMPIIQCDD-DRWLDDLKENEVKLIAADLDTDKTYIDIDYNTSIGII 219 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +G E G+ + + G I++LN S AA++ +Y Sbjct: 220 IGNEANGISEALLSKVDQRVIIPILGKIESLNASVAASILIYKAA 264 >gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] Length = 261 Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 99/255 (38%), Gaps = 6/255 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + ++R G VS A P+ +I + A++ AR + Sbjct: 7 NARVKNVIQLQTRARARKDSRQFVAEGFRMVSEA---PADRIVSIYASE-TFARCNSGYM 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPH 145 P + V ++ QG+ D + ++ L ++++++ DP Sbjct: 63 STIQVPYEMVSDNVFAQMSDTR-TPQGILAVIKMAEYGIGDIIAHDNGLYVIVENLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R + A DGII + + +S G+L +P++ + L++M S Sbjct: 122 NLGTIIRMSEAAGVDGIIMSPNTVDIYNPKTIRSTMGSLYRVPFVYADDFAGTLEQMKSK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + + A ++G EG GL ++ + M G +++LN Sbjct: 182 GVELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTNICSNRIRIPMAGKVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + AA+V + Sbjct: 242 AIAASVLTFEAARQR 256 >gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 259 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 8/257 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--W 83 + K+++ + ++ + L G H V AA I + T R W Sbjct: 6 QNPLVKQIRQLHT-AKGRREEGLFILEGTHLVEAACAVNW-DIMAVCCTPQWEERHRDLW 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + V + I + G+ V + L +VL+ V D Sbjct: 64 ELAVKRADRTEQVSDRLIAAMT-TTVNPDGVVAIARRRDQTP---VPITSLGLVLETVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A +G+ + + ++++GA +P S+L L + Sbjct: 120 PGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSDIQ 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + +D+ + A++LG EG GL P A + + G +++L Sbjct: 180 KQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADYHIRVPLLGNVESL 239 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AA+ LY Q Sbjct: 240 NVAICAALILYEAQRQR 256 >gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 269 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 6/264 (2%) Query: 19 HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 HY + + R DY + + + + + AL + + Sbjct: 4 HYLESAADPRVTDYTTLTDVHLRKLREPREGMYIAESSKVLRRALAAGHQP-RSFFLAEK 62 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L LD PV +++I G +A P P + N+Q + Sbjct: 63 WLEDLDDVFKAHPDVPVYIGKASLLEEITGFHLHRGAMAAMHRPAPVPLATLLANAQRIA 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+ + Sbjct: 123 VLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182 Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAH 253 D L ++ GF + D+ L+ K+AL+LG EG G+ +T Sbjct: 183 DHLAQLKEQGFTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVK 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AVA + + Sbjct: 243 IPMRAGVDSLNVAAASAVAFWELR 266 >gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] Length = 254 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + E L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + QG+ A Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +LT+ + M GF G + L++ K+D A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-QDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 242 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 5/238 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++ G + + L++ +I + K L +K Q + +V Sbjct: 2 QKKYWIMGKNCIETILDHSPERIIEFFTAKKDSDPLLEKVR-SKGIKIKLASKQKLFDLV 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 ++ HQ + SP L N +L+++LD++NDP N+GAILR+A F D +I Sbjct: 61 NSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAILRAAECFGVDAVI 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ 222 +K S + AK+ GA E +P I +SNL + ++K G+ + SD PL Sbjct: 120 WSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAVTAEISDRASPLNA 179 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +K LI+G+EGKG++P + A ++ M G I +LNVS A AV L Q F Sbjct: 180 FQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQATAVLLSHYQKCF 237 >gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6] gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6] Length = 246 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---AAFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +D + + L+ V DP N+G I+R+A A G+I +++ + S +S Sbjct: 92 EEVGQVDLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSEKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+S+ L++ + + +E+ + L++G EG+G Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae 7-10-1-b] Length = 248 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 17/246 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPH-PFPVKTVPPQTIDKI 104 ++ G + AL I ++L NA D H V TVP +T+D Sbjct: 3 DYIEGKRPIIEALRT-QVPIKRILLADNAKRDGLVEDILRKAKHFDVDVTTVPRKTLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMVLDHVNDPHNIGAILRS 153 + HQG+ ET P + + L+++LDH+ D N+GAI RS Sbjct: 62 -SERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHLTDAGNLGAIARS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ + S A KS++GA+ H+P ++ NL + ++ GF G S Sbjct: 121 AEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMARLKERGFWVAGAS 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + KIAL++G E +GL +E+ + L G + +LNV+ A+ + Sbjct: 181 EQTDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACM 240 Query: 274 YITQNH 279 Y Sbjct: 241 YEWLRQ 246 >gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B] gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] Length = 259 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 9/261 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 L +++ K+ + +K ++ + + G V A+ + S I + + AL + Sbjct: 3 KILSKDNNLIKETRKLKEK-KYRIEKGLFLVEGFRFVEEAVKS-SFIIKSIFIDEKALEK 60 Query: 81 LDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 L + +P Q I E QG+ + + Sbjct: 61 LSDYNIETERIHANIYIIPSQIFKTISTTE-TPQGIIAVV---ENKEFAVKNEKGFYIYA 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+G I+R+A A G+I ++ + +S G++ IP I ++ Sbjct: 117 DKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFRIPVILDKDMNK- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+++ + GF+ I S D+ K + + +G EG G+ + + + MPG Sbjct: 176 LKELKAQGFKLIVSSLDTNKNFFDVDLSQMSIIAVGNEGNGVSDELYNLSDEKVKIPMPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 ++LNV+ AA++ + Sbjct: 236 GAESLNVAVAASIMAFEAVRQ 256 >gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 259 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 22/263 (8%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-- 84 HR KK+ S +QKS +L+G V L I +LL + A ++ D Sbjct: 4 HRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHEDCR 54 Query: 85 -ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLD 139 P + + ++++ K HQG+ P LD + ++ LL++LD Sbjct: 55 QLAEERDIPCRIESARRLEQL-SKAKDHQGILARLGPFPYAALDEILGQLTSASLLLMLD 113 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N GAI+R+A A +G+I R + S+ + +S++GA+ HIP + NL D L Sbjct: 114 RVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQDTL 173 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + Q++ + + ++ E + + LI+G E +G+ P E ++ H+ Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTVHI 233 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 M G +++LN + AA + ++ + Sbjct: 234 PMQGAVESLNAAVAAGILMFALR 256 >gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 246 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------TYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A P V + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALESYRDQL---AAFPQTV---WVSEEVLLDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGK--FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ +L +++ + + S K + + AL++G EG+G Sbjct: 150 QGSHFHLPIYRM-SLASFVEEAKKSNLPILATTLSKDSKDYHELSPIENFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 246 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 37/277 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + KIF L + +N L A P V + + + QG+ Sbjct: 40 VQAGVTIEKIFALESYRNQL------AAFPQTI---WVSEDILLDLADSQ-TPQGIVAVV 89 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +D + + L+ V DP N+G I+R+A A G+I + + + S + Sbjct: 90 QKEEVGQVDFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR 147 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEG 237 S G+ H+P R+S+ L++ + + +E+ + + L++G EG Sbjct: 148 SMQGSHFHLPIYRMSS-QRLLEEAKKASIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 206 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 207 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 243 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 117/253 (46%), Gaps = 19/253 (7%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + +K ++ + + G H + A + + I +L + N Sbjct: 8 NTKIKQWAKYKEK-KYRDADQKFLIEGEHLLQEA--HTAGLIECILVEQG--------KN 56 Query: 87 LPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P+ +PV V + + K+ ++V + S +++LD V DP Sbjct: 57 IPYEQYPVYYVTREILKKLT--DSVSGSWVMAVCHFPE---QQALTSDKIIILDGVQDPG 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A++FS I+ +K + + +S GAL H+ IR + L A++++ Sbjct: 112 NLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIR-TELLTAIEELKEK 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ G S PL Q + ALI+G EGKG+R + ++ M ++LNV Sbjct: 171 GYKIYGTSLHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEMD-TFESLNV 229 Query: 266 SNAAAVALYITQN 278 + AAA+ +Y +N Sbjct: 230 AVAAAICMYTFKN 242 >gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 246 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A+ P V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+S+ L++ + + +E+ + L++G EG+G Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMVESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 277 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + V AL+ + LL K+ Sbjct: 18 YARLTEGQLLNRHEPEKGLFIAESPKVVERALDAGCIPVSLLLERKHIEGEARDVLARCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P L + ++ + VL++V +P N+GA Sbjct: 78 DVPVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHS 204 I RSA A D ++ T S + + G + IP+ ++ + ++ + S Sbjct: 138 IFRSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKS 197 Query: 205 WGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 F T ++ DS P+ + K+A+ILG+EG GL T + M + Sbjct: 198 LCFGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWELCR 274 >gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 230 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 12/233 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++G ++V A+ I ++ K + N V + ++DK+ + Sbjct: 4 IVFGKNSVLEAIEY-EFPIEEIYLQKGLVN------NNLKFKKVVYLDRNSLDKLT-ENG 55 Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG A + L ++ S +++LDH+ DP N GAI+RSA F II K Sbjct: 56 NHQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226 + + + K++SG +++ I++++L DA++++ + GF + + K L N Sbjct: 116 RACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQN 278 +KIA+I+G EG G+ + + + ++ +++LNVS A + LY N Sbjct: 176 EKIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVFN 228 >gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 218 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 102/226 (45%), Gaps = 12/226 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 + G H A + + + R++ ++ V V P+ + ++ Sbjct: 1 MIEGWHLFEEA-QKADAEFLNIFVLEEFSDRVEGLSH------VTYVTPEVLKELTDS-K 52 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 QG+ E P D + +VL+ V DP N+G ++R+A A DG++ +++ + Sbjct: 53 TPQGIIAEVVMPSLPLADL--KADRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKTA 110 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 + +S G+ H+P +N+ +A QK+ S G + + S + + Sbjct: 111 DIYNQKTLRSMQGSHFHLPV-WCTNVYEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGE 169 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G EG G+ + + A +AH+ MPG ++LNV+ A + L+ Sbjct: 170 FALVMGNEGNGISEQMTKQADILAHIIMPGQAESLNVAVATGIVLF 215 >gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 271 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 11/258 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + +S+H + + + AL R +A K + D P Sbjct: 16 DYTNLTDIVLRSKHEPEKGLFIAESSNVIRRALAAGLRPRSFFMAEKWVESMADVVEQWP 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVN 142 PV P+ ++ I G LA P+ + + ++ + + + V Sbjct: 76 -DVPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGGEGARRVAIFEDVV 134 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GA RSA A D ++ T R S + + G + +P+ RI + ++ Sbjct: 135 DHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIP-WPSGIGEL 193 Query: 203 HSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + GF L+ SD L++ E KN+K A I G EG GL +T E S+ + M G Sbjct: 194 QAAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPMAGG 253 Query: 260 IKALNVSNAAAVALYITQ 277 + +LNV+ +AAV Y T+ Sbjct: 254 VDSLNVAASAAVVFYATR 271 >gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12] gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12] gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] Length = 254 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + E L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + A QG+ A Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPA-PQGILAVMAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +LT+ + M GF G + L++ K+D A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-KDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] Length = 409 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 11/235 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96 SR + G + V AL + + A RLD L V V Sbjct: 150 SRADRGEPEELVVGRNAVVEALRAGVPASVLYVAAGTEYDERLDEARRLAPRAGVAVADV 209 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 +D++ G A HQGLAL P D + LL+ LD V DP N+GA+ Sbjct: 210 ARGDLDRLCGS-APHQGLALSVPPFRYAHPDDLLARAQEAPPGLLVALDGVTDPRNLGAV 268 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF G++ +R + +A K+++GA +P R +NL AL G + Sbjct: 269 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQAGLFVV 328 Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GL++D + L++ E+ +D + L++G+EG+GL E + M G +++LN Sbjct: 329 GLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESLN 383 >gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 247 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + + G H V AL NP RK+ ++ T+ + R + N+ V + +DK Sbjct: 5 SFLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKELDKY 64 Query: 105 VGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 K+ +H G E + P L +N + +D V DP NIG+++RSA +F D Sbjct: 65 TSKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHID 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R PS+S ++ K+ASG +EHI +SN+ L+ + F G + +K Sbjct: 125 GLIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGEKDF 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K L+ G+EG G+R T + + + +++LN+SN+AA+ + Sbjct: 185 TEIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFH 238 >gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 253 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 15/244 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDK 103 +YG+ + A+ + + I +L + + + P++TVP Q + Sbjct: 5 EIVYGIRPLIEAIRS-KKTISKLFFQRGFRKISNAYKELISLSKKENIPIQTVPKQKFYQ 63 Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG+ +P+ L P + LL++LD + D N G+I+R++ Sbjct: 64 L--KNKNHQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDVRNFGSIIRTSAC 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K+Y+ + K++SGAL +P + N+ + ++ + + G + + + S Sbjct: 122 VGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMNSGLKIVSATEKS 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ALILG E KG+ PK E + A + I +LNVS A V LY Sbjct: 182 NIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVILYEV 241 Query: 277 QNHF 280 Sbjct: 242 FRQR 245 >gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] Length = 264 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 8/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K++ S Q+ ++ ++ + G+ ++ + + I ++ ++ + Sbjct: 6 SKDNKTIKRIVSLGQR-KNRNKHGEYIVEGIRSIRDI--SSNGVIKTIVIRESKFKDNNI 62 Query: 84 DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +A L P DKI QG+ A + + LD Sbjct: 63 EALLALDSMQSIPTYIAQDPIFDKI-DNTVNGQGIIAIVAKPNHSIESISIEDGVYITLD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G I+R+AVA GI K + +S AL IP L+ Sbjct: 122 GVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPVYEDVTLSMLN 181 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + T + + KP + + LILG EG G+ P+ + M G Sbjct: 182 DLIAESNMSTYVTALEESKPYNMVTYDKRCMLILGNEGNGVTPEVMNLCKHRIMIPMYGD 241 Query: 260 IKALNVSNAAAVALYITQNHF 280 I++LNVS AAA+ +Y Q Sbjct: 242 IESLNVSVAAALCMYKAQEQL 262 >gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 246 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I K + + +K K R + + + G H + A Sbjct: 1 MDIIRSKTNNLVKQVKKLQQKKYRTS---------------------SYLIEGWHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + I + + ++ AN V V P+ + + QG+ + A Sbjct: 40 MEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQDLADS-KTPQGVVAQLA- 90 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L S L + + +VL+ V DP N+G ++R+A A DG+ + + + + + +S Sbjct: 91 LPSQLLPETLDGKF-LVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+ ++ L + S + + + S+ +EI AL++G EG+G Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A + H+ MPG ++LNV+ AA + L+ Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243 >gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 244 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + I ++ K L + VP + ++++ Sbjct: 7 IFGIRAIIEAIKSGK-TIDKVFMQKGLRGELFQELEHLLRSESINSSYVPVEKLNRLT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG + +P+ +D + + L ++LD ++D N GAI+R+A + Sbjct: 64 RGNHQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVN 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ + K+++GA+ IP ++ ++ DA+ M S G + I + + + Sbjct: 124 GIIIQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFV 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+I+G+EG+G+ P + + A L + G I++LNVS A LY Sbjct: 184 YDVSFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLYEAVRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] Length = 246 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + R I ++ A ++ +L A P V + + + QG+ Sbjct: 40 VQAGVR-IEKIFALESYRDQL---AAFPQTV---WVSEDILQDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFSQGK--FLFLEDVQDPGNVGTMIRTADATGFTGVIVSDKSADIHSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ +L +++ + + S K + + AL++G EG+G Sbjct: 150 QGSHFHLPIYRM-SLATFIEEAKKSNLPILATTLSKESKDYRELSPLENFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] Length = 261 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 11/245 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQT 100 + + LYG + V A L + R+ ++ T++ D P++ + + Sbjct: 6 QKEQEDLLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKG 65 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153 +++++ VHQG+A TA + L V L++VLDH+ DPHN GAI+RS Sbjct: 66 LERML-PGKVHQGVAARTAGVELLELREVLARIPPAPEPVLVVVLDHLEDPHNAGAIVRS 124 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + R + + K+++GA +P RI N+ L+ + G +GL Sbjct: 125 AEAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLE 184 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ L + + ++AL++G+EGKGL T + + H+ M G +LN S AAA+ L Sbjct: 185 AQGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGL 244 Query: 274 YITQN 278 Y Sbjct: 245 YEWFR 249 >gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 360 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 29/303 (9%) Query: 2 NLISKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + K ++++ + A ++R D ++ + + + + + L + G + A Sbjct: 51 KGPTPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGTDSDELVI-GRNAALEA 108 Query: 61 LNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L PS +++ + R + +D+I HQG+ L+ Sbjct: 109 LRVGVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILK 167 Query: 118 TAPLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVA 156 P +L + + L + LD V DP N+GA++RSA A Sbjct: 168 VQPYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAA 227 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL Sbjct: 228 FGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGG 287 Query: 217 KKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K + E + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 288 DKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYA 347 Query: 276 TQN 278 N Sbjct: 348 VAN 350 >gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 257 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 19/271 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H + +KK+Q+ + Q L G H V+ A+ I Sbjct: 4 EKINSLQNAHV-------KAWKKLQT----KKGRKQQGQYLLDGWHLVNEAVKAHV-AIQ 51 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128 LL T LA + P + + K + QG+ AL T P L Sbjct: 52 TLLITAKQLATEPDLTHFPAVIEI----SDEVAKHISATVTPQGVFALATLPAAIEDLSQ 107 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 108 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 167 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQET 247 I ++L + ++ + G G + + LI+G EG G+ + Sbjct: 168 LIS-TDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLAR 226 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G ++LNV+ AA V ++ Sbjct: 227 TDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 257 >gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] Length = 245 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ +++ + + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36] gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus sanguinis SK36] gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678] Length = 246 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A RL + V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D AL++G EG+G+ P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 193 DSKDSFALVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIF 243 >gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 332 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%) Query: 5 SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + K ++++ + A ++R D ++ + + + S + L + G + AL Sbjct: 25 TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 82 Query: 64 --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 PS +++ + R + +D+I HQG+ L+ P Sbjct: 83 GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQP 141 Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 142 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQSLRERGWYAIGLDGGGDKL 261 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY N Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321 >gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 246 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + + D+ + H V V P+ + ++ Sbjct: 24 RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A P D + +VL+ V DP N+G ++R+A A DG++ Sbjct: 77 TDS-KTPQGIIAEVAMPSLPLADL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R +++ +A QK+ + I + S + Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N AL++G EG G+ + A +AH+ MPG ++LNV+ A + L+ Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 244 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 16/253 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + +K +H + + + G H + A + + +L Sbjct: 8 NAKVKQWAKYKEK-KHREKDQKFLVEGEHLIEEA--ARAGLVEAILVEAGRGHDFL---- 60 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 +PV V P+ + K+ + +A+ P + + ++VLD V DP N Sbjct: 61 ---QYPVYEVTPEILKKLQSSISGTWIMAVCRMPQY----NTADYGERVIVLDDVQDPGN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+RSA++F D ++ + + + +S GAL H+P IR + D LQ++ G Sbjct: 114 VGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIR-GEVVDMLQELKRKG 172 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + S + PL + +++ AL+ G EG G+ A + ++ M ++LNV+ Sbjct: 173 IRILATSLRNATPLHEIAASERFALVFGNEGSGVSEDVLYLADTHVYIEMD-TFESLNVA 231 Query: 267 NAAAVALYITQNH 279 AA + +Y + Sbjct: 232 VAAGICMYTLKRR 244 >gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] Length = 326 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 18/297 (6%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAA 60 + K ++++ R+ +++ N+ + + P + + G + V A Sbjct: 30 KGPTPKAEDRVYHPAHKRKLAAEAARREQARLEKANRLRPELSLAPGHELIAGRNAVLEA 89 Query: 61 LNNPSRKIFQLLATKNA--LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + + + ++ + RL P+ +D++ AVHQG+A+ Sbjct: 90 VRSGI-PLSRVFVSGGVASDERLGEVVRTATALGAPLFEASRTELDRMTD-GAVHQGVAI 147 Query: 117 ETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E P ++ + L++ LD V DPHN+GA++RSA AF DG++ + Sbjct: 148 EVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFGADGVVVPE 207 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S +A + K ++GA +P R+ NL AL K+ + G+ +GL +E Sbjct: 208 RRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDTAIEDISFA 267 Query: 227 D-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 D I L+ G+EGKGL T+ET ++A + + +++LNV+ A +ALY A+ Sbjct: 268 DAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRAR 324 >gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] Length = 251 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 21/263 (7%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I SL++ +KK+ + ++ + + L G H V AL + ++ Sbjct: 4 IQSLQNPQVKH-------WKKLTAKKEREKTFT----YLLEGFHLVEEALK--EEVVTEI 50 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + + W+ PV TV I K + QG+ P+ R Sbjct: 51 IVEEGVDLPNRWNT---EGVPVTTVT-HEISKTLADTETTQGIFAVCRMKKQPSKIIGR- 105 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++D V DP N G ++R+A A D +I K + S + ++A G+ H+ ++ Sbjct: 106 --RYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQGSHLHVGLLK 163 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L ++K++ G + ++ + D A+++G EG G+ P Sbjct: 164 -GDLNMWIEKLNEAAVPVYGTALENGVTFREVNPGDAFAILVGNEGSGVHPDLLAQTEQN 222 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ AA + +Y Sbjct: 223 LSIPIFGKSESLNVAVAAGILMY 245 >gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 244 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 102/240 (42%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + + L+++LD ++ +N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSCSLLNVDGII 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222 + ++ + K++SG+ I + +NL +A++ + + F + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] Length = 257 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 12/257 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82 R + K S + + F G + R AT+ ALA+ Sbjct: 8 SRENPKIKYACSVRDSEKQRAADGLFFAEGPKLCLELAKSCTPRT---AYATEAALAKTP 64 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A+L +P P V P +K+ G ++ L P P L + +++ ++ L+ V Sbjct: 65 ALASL-NPMP---VAPHVAEKLAGTKSSQGVFVLFETPQTDPAL--LDSARRILALEGVQ 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRSA AF D ++ + S +S+ GA +P + NL L ++ Sbjct: 119 DPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVHTENLPGTLHRL 178 Query: 203 HSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G + + +PL++E + +++G+EG+GL +T + + + M + Sbjct: 179 RERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACDAAVRIPMTDRV 238 Query: 261 KALNVSNAAAVALYITQ 277 ++LN A +V L+ + Sbjct: 239 ESLNAGVAGSVLLWHFR 255 >gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis E264] Length = 281 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 7/264 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + L G+H SA L+ + + T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDG 76 Query: 77 ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 AL+ + + P + V P + + GL L A + V N+ Sbjct: 77 ALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTS-- 134 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 135 VVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++++ S + + +A + G EG G+ + ++ AT + Sbjct: 195 GTLIERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIP 251 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 PG +++LNV+ AAAV L+ Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275 >gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 273 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y + +S V AL+ R + L++ K A D Sbjct: 19 RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPLSFLMSEKWADDLSDVLTKY 78 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + P + +++I G LA P D + + + +L+ + D N+ Sbjct: 79 -NNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ T R + + + G + +P+ RI+ L+ +H GF Sbjct: 138 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 197 Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ D ++ + K+ALILG EG GL P T + M + +LN Sbjct: 198 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 257 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 258 VAAASAVAFWETR 270 >gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 255 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 19/271 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H + +KK+Q+ + Q L G H V+ A+ I Sbjct: 2 EKINSLQNAHV-------KAWKKLQT----KKGRKQQGQYLLDGWHLVNEAVKAHV-AIQ 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128 LL T LA + P + + K + QG+ AL T P L Sbjct: 50 TLLITAKQLATEPDLTHFPAVIEI----SDEVAKHISATVTPQGVFALATLPAAIEDLSQ 105 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 106 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQET 247 I ++L + ++ + G G + + LI+G EG G+ + Sbjct: 166 LIS-TDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLAR 224 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G ++LNV+ AA V ++ Sbjct: 225 TDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 255 >gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 263 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 5/254 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK S QK ++ + + GV V + S + T L Sbjct: 9 QNETVKKAASLQQK-KYRLREGLFLVEGVRAVREV-RSSSWTVTAYFFTD--LPEDFQKE 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P V + K+ E Q LA L++VLD ++DP Sbjct: 65 AQGSDIPYYEVTGDIMKKLTATEE-PQSLAALVRLKERSLETVHPERGLILVLDEIHDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A + G+I + + + ++A G L HIP + Sbjct: 124 NVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGNLFHIPVFTGITEDALMTFAQKA 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ + + D L K LI+G+E +G+ E + + + M G ++LNV Sbjct: 184 GWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNV 243 Query: 266 SNAAAVALYITQNH 279 AA + LY Sbjct: 244 GVAAGILLYEAMVQ 257 >gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 261 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 16/270 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+++ ++R+ HR ++ + L L G H V A + L Sbjct: 2 ITSIRNPLIKQIRKLHR-----------TKGRREEGLLLLEGTHLVETAYEANC-SLMTL 49 Query: 72 LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T+ R W+ ++ V + + + G+ TA T + Sbjct: 50 CYTEQWRTRYPQLWENVSKKVQRLELVSLEVLTAMT-TTINPDGVVA-TALFEPFTEGEI 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +L +V++ + DP N+G I+R+A A DGI + + + ++++GA +P Sbjct: 108 TDFRLGLVIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVPI 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+L ++K + GF + ++ + ++LG EG GL A Sbjct: 168 FISSDLKRIVEKYKNNGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLAN 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + I++LNV+ A A+ LY Sbjct: 228 EIVSIPLSEGIESLNVAIATALILYEAXRQ 257 >gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] Length = 255 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 123/277 (44%), Gaps = 24/277 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ ++ + + +Q+ + + L G H V A Sbjct: 1 MEIITSNQNSRV---------------KIWTSLQTLKGREK----SGTYMLDGWHLVQDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + I ++AT+ + + D +P P V + + + + K QG+ +T+ Sbjct: 42 LNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ ++LD + DP N+G ++R+A A G+ +K + + + ++ Sbjct: 98 PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ ++ +L D + K+ + + G S++ + + ALILG EG+G Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P+ Q + H++ G ++LNV+ A + ++ Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFAL 254 >gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] Length = 263 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 13/265 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83 R +KK F Q + + + G + A+ +IF L + Sbjct: 2 EQRKFKKPGGFRQHA--PRPKASSLVIGRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLM 136 + P+ VP + ++ + A HQG T + L V + L + Sbjct: 60 QLAEQYNIPINLVPVEKLNGLTS--ANHQGCVAITGNINYLDLQDVISHVTEQGQTPLFL 117 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD + D NIGAI RSAV II R + + KS++GALE I R+++L Sbjct: 118 ILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSLL 177 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ +H G + I +++ L + +A+I+G+E KG+ P + + ++ H+ M Sbjct: 178 KAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIPM 237 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 G ++ NVS AA + LY Sbjct: 238 AGNFESFNVSVAAGIILYEAMKQRG 262 >gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42] gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42] Length = 248 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 110/268 (41%), Gaps = 22/268 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S K+ +D+KK+ + ++ + + G H AL + + Sbjct: 2 KRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKG-TVK 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++L + D D P + + E + + D + Sbjct: 50 EILVNDESAIPADLDM----SIPCYVLSEDAFSAVTETETPQR--IAAVCHMPDKRPDQL 103 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+++D V DP N+G ++R+A A D ++ + + + +SA G+ HIP Sbjct: 104 K---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPI 160 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ L + ++ S G G + ++ + + ALI+G EG G+ + Sbjct: 161 LKRP-LDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTD 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AAA+ +Y + Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 275 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +SR + +S AL+ + L+ + Sbjct: 18 YARLTQNQLRSRLEPEKGIFIAESPKVISRALDAGFVPVSLLMERRQITGPAAEILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ T + + + G E L P + RN++ + VL+ + D N+GA Sbjct: 78 DAPIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELCRNARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204 I RSA A + D ++ + + G + +P+ +I L ++++ Sbjct: 138 IFRSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEKGLAQLNA 197 Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD ++ E K+A++LG EG GL T + + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLSHTTIASCDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGKQ 275 >gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] Length = 279 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 27/261 (10%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G V P +I +L +++ R + Sbjct: 6 SNAQIKELAKLQKKSRLRDERRIFLVEGPRMVEEI---PKERIERLYISES-FERKNPAY 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------- 134 P + + V QG+ L D + S L Sbjct: 62 IRELGMPAEVLSDPVFS-YVSDTKNPQGILAVVKRLEYTMEDVLGKSALKCEEKSGEKEK 120 Query: 135 -----------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++VLD++ DP N+G I R+A A GI+ + + + +S GA Sbjct: 121 NPENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGA 180 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P+ + +L A++ + S G +T + K ++E + A ++G EG GLR + Sbjct: 181 VFRMPFFYVKDLPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDE 240 Query: 244 TQETATSMAHLHMPGIIKALN 264 E A + + M G ++LN Sbjct: 241 VSECADCLIRIPMCGKAESLN 261 >gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] Length = 245 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +N+ +++ + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] Length = 244 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 110/240 (45%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ + ++ I ++ K L + VP + ++++ Sbjct: 7 VFGLRAIIEAI-SSNKSIDKVFLQKELKGELFNELVQLIKKNSINSSYVPVEKLNRLT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG + +P+ + + ++ L ++LD ++D N GAI+R+A Sbjct: 64 KGNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFGAIIRTAECTGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ K+ + K+++GA+ +P ++ ++ DA+ + + G + I + + + Sbjct: 124 GIVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVKVIAATEKTNDTV 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++G+EG+G+ P + A + A L + G I++LNVS A LY Sbjct: 184 FDVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVACGAFLYEAIRQR 243 >gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] Length = 261 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 10/249 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95 R + +LYG + V+ AL R +A T + L A + PV Sbjct: 2 RRLQPGRPSEYLYGRNAVAEALRGRRRHRRLFVASGIETHGRIVALMEAARV-RGIPVIV 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILR 152 +P +D++VG HQG+ LET+P + + ++++LDH+ DP NI +LR Sbjct: 61 IPRSELDRMVGS-VNHQGVVLETSPYPYVDFATLLDPAPESIVLLLDHLQDPQNIATLLR 119 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A G++ +R + + + +++GA+EH+ ++NL A+ + G+ + L Sbjct: 120 TAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTLREHGYWIVAL 179 Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + L + + L++GAEG GL P + A + M G I++LN + A ++ Sbjct: 180 EPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSI 239 Query: 272 ALYITQNHF 280 ALY Sbjct: 240 ALYEIVRRL 248 >gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15] gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15] Length = 254 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + E L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + QG+ A Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKGISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ +LT+ + M GF G + L++ K+D A+I+G EG+G Sbjct: 157 QGSNYHLPVLQ-QDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ M G ++LNV AA + LY HF+ Sbjct: 216 VSQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253 >gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] Length = 254 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+N+ + I + ++ + ++ D V V P+ + +I Sbjct: 30 RTDSYLIEGWHLYEEAVNHQA-PIEHVFVLEDFVDKIKVDTK------VTIVTPEVLSEI 82 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 ++ QG+ E + P ++L+ V DP N+G ++R+A A DG++ Sbjct: 83 TDSKS-PQGIVAEIK--IQPIQHLQLTQGRYLLLEDVQDPGNVGTMIRTADAAGFDGVLL 139 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 T + + + +S G+ H+P IR+ L + + S + +Q Sbjct: 140 TDQSADLYNMKTLRSMQGSHFHLPVIRLPK-EQLLTAIEESQLPIYATTLSQNSVDYKQV 198 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L++G EG+G+ K E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 199 EKVPAFVLVMGNEGQGISSKMAESADQLVHITMPGQAESLNVAVAAGILIF 249 >gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555] gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016] gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 266 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 28/282 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I K + I K K R + + + G V A Sbjct: 1 MDIIRSKDNLHIKEAKKLKEKKYR-------------------IRRKEFIIEGFRFVKEA 41 Query: 61 LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 +N+ I Q+ ++ N R + N P+ V + + I E QG+ Sbjct: 42 INS-EFYISQIFLSEYFTNREERFFLERNNKVKCPIYFVTDEILRSISCTE-NPQGIIAV 99 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + L+ ++ D + DP N+G I+RSA A GIITTK + Sbjct: 100 VK---NKELNIKDEQGFYILADRIQDPGNMGTIIRSAHASGALGIITTKGTVDVYNEKTL 156 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ G++ +IP I+ NL + + GF+ I S DS KI + +G EG Sbjct: 157 RATMGSIFYIPIIQDENLEK-VSTLRQMGFKLISSSLDSDINFYDMDLRGKIIIAIGNEG 215 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL ++ + ++ MPG ++LN + AA++ ++ Sbjct: 216 NGLLQDVKKISDIEVNIPMPGNAESLNAAVAASIMMFEVVRQ 257 >gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 244 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G + A+ K+F N+L + VP + ++K+ + Sbjct: 7 IHGTRAIIEAIEAGKEVDKVFLQKGLHNSLLSELNTLIKKNGIQTSFVPIEKLNKLT--Q 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ + + + L ++LD ++D N GAI+R+A G Sbjct: 65 LNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFGAIIRTAECTGAHG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K+ + V K+++GA +P ++ ++ DA+ + G Q + + + L Sbjct: 125 VIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQVVAATEKTDNTLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G E G+ P + A L + G I +LNVS A LY Sbjct: 185 DVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQR 243 >gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0017] Length = 258 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 5/239 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANAEVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + QG+ L + ++ ++LD++ DP N+G ++R+A A G Sbjct: 82 NSL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220 +I K + + + +S G+ H+P ++ LT+ +Q G G ++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAY 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 199 YEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6] gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6] Length = 252 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 46 VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 156 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 215 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 249 >gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 246 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A+ P V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALESYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+S+ L++ + + +E+ + L++G EG+G Sbjct: 150 QGSHFHLPIYRMSSQA-LLEEAKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio] Length = 387 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 119/282 (42%), Gaps = 26/282 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--- 73 S KLR + S + S+ E ++GV AL R L Sbjct: 98 SSELQKLRFEDLSESESSSIRKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSG 157 Query: 74 ---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLS 123 ++A+ R+ +A + +K V QT++K+ VHQGL L+ + Sbjct: 158 EGPERDAILRVCQEA-IRRGVQIKRVNKQTLEKMCD-GKVHQGLCLQASCLGFIKEERPI 215 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +L+ L +VLD V DP N+GAILRSA D I+++ S + ++K+++G Sbjct: 216 TSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGV 275 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAE 236 +E + SNL ++ G+Q +G S + + L++G E Sbjct: 276 MEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGE 335 Query: 237 GKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274 G GL + ++ + + M +++LNVS A + L+ Sbjct: 336 GDGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLH 377 >gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232] gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 245 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ +++ + + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 269 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 6/264 (2%) Query: 19 HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 H+ + + R DY ++ + + + AL + + Sbjct: 4 HHLQSADDPRVSDYTRLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L LD PV ++ I G +A P P + N++ + Sbjct: 63 WLEDLDDVFEQFPDVPVYIGSAALLEDITGFHLHRGAMAAMQRPSPVPLPGLLANARRVA 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+ + Sbjct: 123 VLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182 Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAH 253 L + GF + D +++ DK+AL+LG EG G+ P+T Sbjct: 183 GDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDLAVR 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AVA + + Sbjct: 243 IPMRAGVDSLNVAAASAVAFWELR 266 >gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] Length = 257 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 99/255 (38%), Gaps = 9/255 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ +++ + SR + G+ P + ++ + + L + Sbjct: 6 QNKQIRQVIKLKKSSRERKRTGLFVAEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144 P + V P+ +I E QG+ S + + R+ +++L+++ DP Sbjct: 63 ---KGIPFEEVSPKVFREISDTE-TPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDP 118 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII ++ + + +S G++ +P+ +L + ++ + Sbjct: 119 GNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQ 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + E + A ++G EG GL + A + M G +++LN Sbjct: 179 QSVHVYAAHLNG-TDYTDESYDKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLN 237 Query: 265 VSNAAAVALYITQNH 279 + A + +Y + Sbjct: 238 AAMAGGLLMYEARRQ 252 >gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) (MRM1) [Danio rerio] Length = 321 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 26/262 (9%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90 + S+ E ++GV AL R L ++A+ R+ +A + Sbjct: 52 RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 110 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVND 143 +K V QT++K+ VHQGL L+ + +L+ L +VLD V D Sbjct: 111 VQIKRVNKQTLEKMCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQD 169 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILRSA D I+++ S + ++K+++G +E + SNL ++ Sbjct: 170 PMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKV 229 Query: 204 SWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH- 255 G+Q +G S + + L++G EG GL + ++ + + Sbjct: 230 EEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPP 289 Query: 256 ---MPGIIKALNVSNAAAVALY 274 M +++LNVS A + L+ Sbjct: 290 RRHMHPGVESLNVSVATGILLH 311 >gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] Length = 290 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y + +S V AL+ R + L++ K A D Sbjct: 36 RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPLSFLMSEKWADDLSDVLTKY 95 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + P + +++I G LA P D + + + +L+ + D N+ Sbjct: 96 -NNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 154 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ T R + + + G + +P+ RI+ L+ +H GF Sbjct: 155 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 214 Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ D ++ + K+ALILG EG GL P T + M + +LN Sbjct: 215 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 274 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 275 VAAASAVAFWETR 287 >gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes MGAS315] gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1] gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ +++ + + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710b] Length = 281 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 7/264 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + E L G H SA L+ + + T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDG 76 Query: 77 ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 ALA + + P + V P + + GL L A +P L A R + Sbjct: 77 ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTS 134 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 135 VVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++++ S + + +A + G EG G+ + +E AT + Sbjct: 195 GTLIERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIP 251 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 PG +++LNV+ AAAV L+ Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275 >gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 22/207 (10%) Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + R + P VK + + +D I+ K + L Sbjct: 9 EQEARRNKHVRSAPSKIAVKALGEEVLDGILDKSSN----------------------PL 46 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++LD V DPHN+GAILR+A D +I + S + + + + GA E +P+I+++N Sbjct: 47 LLILDCVQDPHNLGAILRTADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTN 106 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L ++++ S G G S + L + AL++GAEG+G+R T+E + + Sbjct: 107 LARTMKQLQSRGIWIFGTSDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCDFLLRI 166 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M G I LNVS A V LY + Sbjct: 167 PMKGSIPCLNVSVATGVCLYEMVRQRS 193 >gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 275 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + + AL+ + + L+ K + Sbjct: 18 YARLTQNQLRNRLEPEKGIFIAESPKVIDRALDAGYKPVSLLMERKQITGPAAGILSRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G E L P P + +N++ + VL+ + D N+GA Sbjct: 78 DAPVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELCKNARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-----IRISNLTDALQKMHS 204 I RSA A + D ++ + + G + +P+ + +HS Sbjct: 138 IFRSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEKGMDILHS 197 Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD ++ E K K+A++LG EG GL T + + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIASCDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGKQ 275 >gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 255 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 10/255 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ +K S K + + F+ G + N R I Q+ ++ + Sbjct: 7 QNQIFKDALSLQNK-KLRDKNGLFFVEGKKQIYEIPKN--RTIKQIFISEKYKNDVTNLK 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N V + K+ ++ QG+ D ++NS L ++L+++ DP Sbjct: 64 N------VIMLSNHLFSKLSATKS-PQGIMAIVEKKYYAVEDIIKNSGLFILLENIQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA AF + +K + S ++ G++ H+P I N+ + L M + Sbjct: 117 NLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFHLPIIDSINIKNTLNLMKNK 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 S +K L +K A ++G E GLR +T+ +A ++ ++MPG ++LN Sbjct: 177 KISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETENSADTLVKIYMPGNTESLNA 236 Query: 266 SNAAAVALYITQNHF 280 + AA++ +Y + Sbjct: 237 ATAASIIMYEAAKNR 251 >gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7] Length = 274 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 10/260 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + + + Q N+K + + AL+ I L+ K+ + Sbjct: 18 YARWTENQLLNRKDPDNA---MFIAESPKVIQTALDAGYEPISCLVEKKHVEGQAAPILA 74 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV T + ++ G L + L D +N++ + +L+ V +P N Sbjct: 75 QCGDIPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTN 134 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKM 202 +GAI RSA A DGI+ T S + + G + IP+ ++S A+ ++ Sbjct: 135 VGAIFRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRL 194 Query: 203 HSWGFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 H GF+ ++ D Q + +K+A++LG EG GL T + M Sbjct: 195 HEMGFKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHG 254 Query: 260 IKALNVSNAAAVALYITQNH 279 + +LNV+ A+AVA + + Sbjct: 255 VDSLNVAAASAVAFWEMRRR 274 >gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 245 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 14/232 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + I + + RL V V P+ + ++ Sbjct: 23 RKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E + L+ L+ + DP N+G I+R+A A + DG+ Sbjct: 76 TSS-PNPQGIIAEVKFCQQALPTSYAGKYLI--LEDIQDPGNLGTIIRTADAANFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ Q M + + S+ ++ + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDIYQVSQAMQQQKIPVLATTL-SQDSIDYKD 190 Query: 225 KNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL+LG EG+G+ P+ A + H+ MPG ++LNV+ AA + ++ Sbjct: 191 LSARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242 >gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] Length = 197 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 1/167 (0%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L+ L L++ + + +++LD V DPHN+GA +R+A D +I K + + Sbjct: 31 LKQEDELESFLES-KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDT 89 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + + G + R+ N+ ++K+ G G S + + L +AL++G+ Sbjct: 90 VMSVSCGGASNTAIFRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGS 149 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 EGKG+R T+E + + M G + LNVS A V LY A+ Sbjct: 150 EGKGMRRLTEEKCDFLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAE 196 >gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 226 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---LLSP 124 +F L + + P V+ +++K+ G HQG+ P L Sbjct: 4 LFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL-PFHQGVVAAVRPHPTLNEK 62 Query: 125 TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LD + LL+ LD V DPHN+GA +R+A A +I + S S + K A+ Sbjct: 63 DLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAA 122 Query: 182 GALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239 G E + +I+++NL L + + IG D P+++ + + +++GAE G Sbjct: 123 GGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTG 182 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LRP TQ A++ M G +++LNVS A +ALY ++ Sbjct: 183 LRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQRSE 225 >gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] Length = 267 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 5/262 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 L + K +K +H + + G+H V AL++ + K L Sbjct: 4 LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECIAYDMDKGIPLEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + A+ +R + L++VLD + Sbjct: 63 RQIPDRGQGAEWIGVSHAVISKVSDTPSPQPVFAVVRKEARQWQDLIMRENGLVIVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R A A G+I + + + +S G+L H+P + L L + Sbjct: 123 QDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLE-GELLSILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + K+ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIVDDAIRIPMPGQAE 241 Query: 262 ALNVSNAAAVALYI--TQNHFA 281 +LN + AA+V +Y Q H+A Sbjct: 242 SLNAAMAASVLMYEALRQRHYA 263 >gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 246 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H AL++ + + + A L V + P + + Sbjct: 24 RTDSYLIEGWHLFEEALSSGAE-VISIFALPEYADHLSGCKQ------VYWLSPDLLRDL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E + + L L+ V DP N+G I+R+A A DGI Sbjct: 77 ADS-KTPQGIVAEVRLQQEVLPEKLSGKYLF--LEDVQDPGNLGTIIRTADAAGFDGIFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223 ++ + + +S G+ H+P R++ D + SD E+ Sbjct: 134 SEHSADLYNLKTLRSMQGSHFHLPIYRLA-TADLIDLAKKSDLPIFASTLSDDSIDYEKL 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++G EG+G+ + A + H+ M G ++LNV+ AA + ++ Sbjct: 193 KGSQNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245 >gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 255 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 10/259 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + L + + K+++ QK ++ +Q + G H V A+ + I L T Sbjct: 2 NRMKEILSKKNILIKEVKKLAQK-KYRNQTNTYIIDGWHLVQEAIAASA-PINYLFVTDK 59 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + V + + + QG+ + + + + Sbjct: 60 GIQETGNQLKDYQD-KVFRISDEV-AAFLSDLPTPQGIFAVIE--KETVQETIHGN--WL 113 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD+V DP N+G ++R+A A G+ + S + +S G+ H+P + ++ Sbjct: 114 ILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILE-GDVP 172 Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +QK+ + G G + + K A ILG EG+G+ P ++ Sbjct: 173 AFIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYIP 232 Query: 256 MPGIIKALNVSNAAAVALY 274 + G ++LNV+ AA + +Y Sbjct: 233 IYGQAESLNVAIAAGILMY 251 >gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] Length = 319 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 17/241 (7%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-----ATKNALARLDWDANLPHPFPVK 94 ++ L G + V AL P+ ++ + AT + AN P+ Sbjct: 67 QRAEEAPELLLGRNPVVEALRAEIPATALYVVTGDARTATDERITEALHLAN-DRGLPLL 125 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNI 147 V D++ A+HQG+ L+ P D + + L++ +D V DP N+ Sbjct: 126 EVGKAEFDRM-SNGALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNL 184 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA++RSA AF G++ +R S +A ++++GA +P R NL AL G Sbjct: 185 GAVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGL 244 Query: 208 QTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 T+GL+ D L D +AL++GAEG GL +E + + + ++LNVS Sbjct: 245 MTVGLAGDGDVDLHDFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVS 304 Query: 267 N 267 Sbjct: 305 V 305 >gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] Length = 245 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A +G+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFNGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ +++ + + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 225 -KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 TYHERLALVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 260 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 18/255 (7%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWD 84 K ++S + +RH + + + GV V+ AL + L A T A L+ Sbjct: 13 KWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRL 72 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +LPH FP P I E +A T P L P L +VLD + DP Sbjct: 73 RHLPHCFP---ATPAVIVAAADTEQPQGVVAAVTWPELPP------RPGLRLVLDAIQDP 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G +LRSA A ++ + +A++A GA +P R+S ++ S Sbjct: 124 GNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPL-RVSPWETIRAELQS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + S ++P ALI+G E GL + A + M G I++LN Sbjct: 183 --YTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN 240 Query: 265 VSNAAAVALYITQNH 279 A ++ L+ Sbjct: 241 AGVAGSIILFEALRQ 255 >gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis ATCC 14018] Length = 331 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 29/300 (9%) Query: 5 SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + K ++++ + A ++R D ++ + + + + + L + G + AL Sbjct: 25 TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGTDSDELVI-GRNAALEALRV 82 Query: 64 --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 PS +++ + R + +D+I HQG+ L+ P Sbjct: 83 GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQP 141 Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + + L + LD V DP N+GA++RSA AF Sbjct: 142 YQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 261 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY N Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321 >gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] Length = 278 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 11/240 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA 109 G V L + ++ + AR L PV + I+ K+ Sbjct: 33 GFQAVRDTLQSKDGTFREIWIAEGKSSARTQEIIKLATSKNIPVHFKQRHYLSDIL-KDM 91 Query: 110 VHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + S L L+V DH+ D N+GA++R+A F G+ Sbjct: 92 AHQGIVGIADAFDYSNFHLLLKSALEAGPSALLLVADHITDSGNLGALMRTAAFFGAHGL 151 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + K +SGA +P R++NL+ AL ++ +G + ++++ + Sbjct: 152 IIPKDRSAGITPTVLKRSSGAHTKLPVARVTNLSRALNELSRNELWIMGAAGEAEESIYD 211 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L+LG E KGL P ++ + + PG +LN+S A V L K Sbjct: 212 FDWRRPLVLVLGNERKGLSPSARKQCHGLVSIPSPGNTDSLNISVAGGVILSEICRQRQK 271 >gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 274 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 7/254 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL++ + I L+ K+ Sbjct: 18 YARISEIQLLNRAEPEKGIFIAESPKVIERALDSGCQPISFLVEHKHVEGEAKELIRRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G + L P L +D +N++ + VL++V +P NIGA Sbjct: 78 DIPVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSW 205 I RSA A D ++ T S + + G + IP+ T+ ++ + + Sbjct: 138 IFRSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAM 197 Query: 206 GFQTIGLSSDSKK-PLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+T ++ ++ + +K+A++LG EG GL +T + M + + Sbjct: 198 GFKTAAMALREDSFDIDDPHLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257 Query: 263 LNVSNAAAVALYIT 276 LNV+ A+AVA + Sbjct: 258 LNVAAASAVAFWQL 271 >gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] Length = 254 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 13/239 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTI 101 + F+ G +V AL + + ++ ++P F + + Sbjct: 23 RYEEGLFFVEGTTSVLEALKSNFEIEYIVMGE-------GVKIDIPTGNFKIVHTTERVF 75 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 KI Q + +++ + ++ D++ DP N+G I+R+A AF Sbjct: 76 KKISDT-VTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASA 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I T + + +++ G++ HIP I ++ L K+ G + ++K + Sbjct: 135 IFTINNCVDVFNPKVLRASMGSIFHIPVIVTAS--QILLKLKQRGIKVFATHLKARKLVH 192 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +DK+A +LG E KG+ + + M G ++LNVS AA + LY +Q Sbjct: 193 ECNISDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQR 249 >gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG] gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11] gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98] gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG] gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11] gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98] gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX2137] gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0043] gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1346] Length = 258 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 5/239 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTWLAEQETEKLI-FVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + QG+ L + ++ ++LD++ DP N+G ++R+A A G Sbjct: 82 NSL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220 +I K + + + +S G+ H+P ++ LT+ +Q G G ++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAY 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 199 YEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 259 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 18/271 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + SL++ ++R+ H ++ + L G H + AA I L Sbjct: 2 LTSLQNPLVKQIRQLHT-----------AKARREEGLFILEGTHLIEAACAVNWE-IITL 49 Query: 72 LATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T R W+ + V + I + G+ V Sbjct: 50 CCTPQWQERHPELWELAAKTADRTEQVSDRLIVAMT-TTVNPDGVVAIARRQDQTP---V 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L +VL+ V DP N+G ++R+A A +G+ + + ++++GA +P Sbjct: 106 PITSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPI 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+L L G Q + +D+ + A++LG EG GL P A Sbjct: 166 AVHSDLITQLSNSQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLAD 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +++LNV+ AA+ LY Q Sbjct: 226 YHIRVPLLGNVESLNVAICAALILYEAQRQR 256 >gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] Length = 246 Score = 205 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 112/277 (40%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + + G H A Sbjct: 1 MTIITSKANSVVKNTKKLHQKKYRKS---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + KI ++ A +L + +P V +D + QG+ Sbjct: 40 VQAGA-KIEKIFALVEYGDKL-----VDYPQTVFVAEEILLD--LADSQTPQGIVAIVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEEQLPDLSQGKYLF--LEDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ + +++ + + S + K + + + AL++G EG+G Sbjct: 150 QGSHFHLPIYRMP-VETFVEEAKKNHLPILATTLSQNSKDYRELDRLEDFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P + A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 245 >gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] Length = 248 Score = 205 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--GK 107 +YG + V L I ++ N + + ++K+ Sbjct: 9 IVYGRNAVLELLQQKPESIEKIYFQFNTAHPKLKEIIIGARRQKIVTGKARLEKLSLIAG 68 Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + + +LD V +S LL+VL ++DPHNIGAI+R+A A + D + Sbjct: 69 TTKHQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAV 128 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + +AV+ K+++GAL H+ ++ +L AL+ +H Q I D++ Sbjct: 129 VLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDAELNYND 188 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A++LG EG G+ P+ + + + M G +++LNVS A V LY + Sbjct: 189 ADMKRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYESMRQR 246 >gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] Length = 270 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 4/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K + ++ Q E GV A +I ++ T+ AL R Sbjct: 7 SKENPAVKHAARLLKSAKFRRQEEAFLAEGVRLCRDA-AYSGVRILRMFYTEEALERYPK 65 Query: 84 DANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHV 141 D L + + Q + + QG+ A L LD + S L+ L+ + Sbjct: 66 DVELLREKAERAFLLSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDI 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LR+A A G+I T+ S + + + GA+ +P + + A+ Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNA 185 Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF T+ D +P+ Q + + +++G EG GL+P+T + M G Sbjct: 186 LEQKGFVTMAAVPDREAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRA 245 Query: 261 KALNVSNAAAVALYITQN 278 ++LN S AA++ ++ Sbjct: 246 ESLNASVAASLLMWEMMR 263 >gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus VCS1703A] Length = 242 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDK 103 +++ G+H + ALN+ + + +L ++ LA L DA + TVP ID Sbjct: 3 TIWIGGIHALRQALNDGN--LLRLEVSEGKTSKNLASLVADAKAAQ-IEIITVPRHYIDH 59 Query: 104 IVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + HQG+A L + ++VLD + DPHN+GA LR+A+A Sbjct: 60 RL-PDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGV 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ + + V+ K A GA E + R++NL ++ M G +G + +++K Sbjct: 119 DAVVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKS 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + + +I+G E KG+ ++T +A + M +++LNVS A + L+ + Sbjct: 179 LFDLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQ 238 Query: 280 F 280 Sbjct: 239 R 239 >gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 260 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 13/261 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHV 141 + + + Q + + ++ ++ ++ ++LD + Sbjct: 66 LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINMTVKINRPKHFAFSYGKWVLLDDL 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ Sbjct: 125 ADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIAS 183 Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + D + K L ++ALI+G E G+ P+ + A ++ + G Sbjct: 184 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 243 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN + AA + +Y HF+ Sbjct: 244 ESLNAAVAAGIMIY----HFS 260 >gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 289 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 20/275 (7%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 ++ S++ RR + ++F + R G V AL P + + Sbjct: 5 ELTSIRSPRVKSARRLAK-----RTFRHRERR------FLAEGPQAVREALGLPG-VLTE 52 Query: 71 LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L T A +R PV V + + ++ + QGL + DA Sbjct: 53 LFTTAEAESRHAELVTAAERAGVPVLRVSGEVMAELA-QTVTPQGLLGVCTFVDVSLADA 111 Query: 129 VRNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L+ VL HV DP N G +LR+A A CD ++ T + ++++G+L H+ Sbjct: 112 LSPPPTLVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHV 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPK 243 P + + + + G + + L+ + A + G E GL + Sbjct: 172 PVVAGTRFETLIGALRECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEE 231 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + G ++LN++ AAAV LY + Sbjct: 232 ILRAVDHVVRVPIYGRAESLNLATAAAVCLYASAR 266 >gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS] gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] Length = 245 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ +++ + + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYETPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] Length = 216 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 87/195 (44%), Gaps = 5/195 (2%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPH 145 + + ++ G + HQG+ + +++ + + L+++LD + DPH Sbjct: 18 RGIRYSFESEENLRRLSGTKK-HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPH 76 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R++V +GII K S + + K ++G + ++NL ++++ Sbjct: 77 NLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKER 136 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + P+ +E A + G EG+G+R +E + + M I +LNV Sbjct: 137 GVWVYASDVNG-TPIYEEDFTLPTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNV 195 Query: 266 SNAAAVALYITQNHF 280 S + + L+ Sbjct: 196 SVSVGIVLFEAVRQR 210 >gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 272 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 8/258 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP 88 K ++ + + ++ + + + G+ V + L L Sbjct: 16 KHIKGLSLR-KNRIKHQQFTIEGLRIVEECFLHGGPIDHILYCDHIHQVQGGPHLLEKLK 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLD-AVRNSQLLMVLDHVNDPH 145 +P KI E QG+ +LD + + ++VLD + DP Sbjct: 75 EKYPCHQTMDSLFLKIADTE-TPQGIIAVVEMKNHQLESLDLEKKENPFIVVLDEIQDPG 133 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A D II TK ++ ++ GA+ H+P I+ +N + + + + Sbjct: 134 NLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSNNNEEWIYYLKAN 193 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + ++ K Q N+ IA+I+G E +G+ P + + G I++LN Sbjct: 194 AVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVDERVKIPILGKIESLNA 253 Query: 266 SNAAAVALYI-TQNHFAK 282 S AA + +Y Q F K Sbjct: 254 SVAAGILIYQGIQGRFLK 271 >gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 248 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+ V A+ ++ +L ++ +LD A L P + P +D+ Sbjct: 4 LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDRRSA- 62 Query: 108 EAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG L +D + + + LD V DP N GA++RSAVA Sbjct: 63 GGRHQGAVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGA 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ + S + ++++GA+EH R+ +L DAL+ + + G I L + Sbjct: 123 RAILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIALDAQGPVE 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +A+++GAE KG R + +A L M G I +LN S A A+ALY Sbjct: 183 LGELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQ 242 Query: 280 F 280 Sbjct: 243 R 243 >gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34] gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34] Length = 246 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + + D+ + H V V P+ + ++ Sbjct: 24 RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A P D + +VL+ V DP N+G ++R+A A DG++ Sbjct: 77 TDS-KTPQGIIAELAMPSLPLADL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R +++ +A QK+ + I + S + Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTI 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N AL++G EG G+ + A +AH+ MPG ++LNV+ A + L+ Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39] gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39] gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 246 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] Length = 245 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 110/272 (40%), Gaps = 33/272 (12%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 IS K + I K + K R++ + + G H A Sbjct: 3 ISSKANPIIKQSKKLLHKKYRKD---------------------SYLIEGWHLFEEA-KK 40 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + ++ + R+ D V V P+ + ++ QG+ E Sbjct: 41 AQVSFLHIFVLEDYVDRVAADGK------VIVVTPEVLKELTDS-PTPQGIVAEVKQEQL 93 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + LL L+ V DP N+G ++R+A A DG++ +++ + + +S G+ Sbjct: 94 DLPSIGKGKYLL--LEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSMQGS 151 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRP 242 HIP R +++ + M S + + + +++ L++G EG+G+ Sbjct: 152 HYHIPVWR-TDIYAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGIST 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K E ++ + H+ MPG ++LNV+ AA + ++ Sbjct: 211 KMAEHSSQLVHISMPGQAESLNVAVAAGILIF 242 >gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 13/258 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K++++ ++S + + G V + I + +A R L Sbjct: 11 KQVKALGRRS-ARDKAGLFLVEGRQAVRELIRFAPMSIRDVYLDADAAERHPDLRELAGE 69 Query: 91 FP----------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLD 139 + V PQ + + E QG+ P+ P D + S +++ Sbjct: 70 WADGAAAGERRFVHDCSPQVLAAMCDTEQ-PQGIIAVARPIDRPLADVLAGSPKFVVICT 128 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +V DP N G ++R A A D +I + + L +S+ G+L H+P R S++ + Sbjct: 129 NVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVRSSVGSLWHLPISRGSSIEEIF 188 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G + L A ++G E GL P+ +E + + + G Sbjct: 189 AACRAAGLTLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYGH 248 Query: 260 IKALNVSNAAAVALYITQ 277 ++LN++ AA V LY + Sbjct: 249 AESLNLAMAATVCLYASA 266 >gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 266 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 106/263 (40%), Gaps = 13/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84 N+R + + + +K++ + + G + P ++ + +++ L + Sbjct: 7 NNR-VRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKA 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMV 137 + L + V + + + QG+ A L + V+ + LM+ Sbjct: 63 SKLLQGICFEEVSDDVMKYMSDTQ-TPQGILAVAAQLSHSLNEIVKGDGIKRNSPAHLMI 121 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + DP N+G ILR+ G++ + + + +S G++ +P++ + + Sbjct: 122 LETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQ 181 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL ++ + G + K E E ++G E GL +T A + M Sbjct: 182 ALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMA 241 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +++LN + AA++ ++ T Sbjct: 242 GQVESLNAAVAASILMFETARQR 264 >gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] Length = 262 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 50 FLYGVHTVSAALNNPSRK------IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + G H V + + + + A + A P K +DK Sbjct: 5 IVTGFHAVEEYVRRAAVQEKQPAALQLFYAAPGPRVKKILAAAEKAGIPCKKTESGELDK 64 Query: 104 IVGKEAV----HQGLALETAPLLSPTLDAVR--------------NSQLLMVLDHVNDPH 145 + +V H+G+ L + TL+ + Q ++VLD V DPH Sbjct: 65 LTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAERQTVVVLDSVTDPH 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEHIPYIRISNLTDALQKM 202 NIGAILRS + +R S V++++++GA +P SNL A+ ++ Sbjct: 125 NIGAILRSCDQLGVSLAVLPERRGVKNVDGSEVISRASAGASAWVPISIASNLVRAVGQL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + GF G S P+ + LI+G+EG G+ E + + G + + Sbjct: 185 KAAGFWIYGADS-GGTPVTDVDFPPRTVLIMGSEGSGISRLLAEQCDRIVSIPTCGKLDS 243 Query: 263 LNVSNAAAVALYITQN 278 LNVS AA + LY Sbjct: 244 LNVSVAAGILLYDIYR 259 >gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] Length = 269 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R Q + AL + L K+ P Sbjct: 20 LTEAQLRNRIDPQRGIFIAESPKVIRVALEAGYEPVSLLCERKHLTGDAADIVQRMAHLP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + ++ G L P P + R ++ ++V+ V D NIGAI R Sbjct: 80 VYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T + + + G++ +P+ + L+++ GF+T + Sbjct: 140 SAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVD---RPLEQLKELGFRTAAM 196 Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D PL+ + ++AL++G EG GL E A + + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWELR 264 >gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] Length = 245 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + RL + L V PQ + ++ Sbjct: 23 RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + + QG+ E + +VL+ V DP N+G I+R+A A DG+ Sbjct: 76 IDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +N+ +++ + + K + + Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191 Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 266 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 106/263 (40%), Gaps = 13/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84 N+R + + + +K++ + + G + P ++ + +++ L + Sbjct: 7 NNR-VRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKA 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMV 137 + L + V + + + QG+ A L + V+ + LM+ Sbjct: 63 SELLQGICFEEVSDDVMKYMSDTQ-TPQGILAVAAQLSHSLNEIVKGDGIKRDSPAHLMI 121 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + DP N+G ILR+ G++ + + + +S G++ +P++ + + Sbjct: 122 LETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQ 181 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL ++ + G + K E E ++G E GL +T A + M Sbjct: 182 ALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMA 241 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +++LN + AA++ ++ T Sbjct: 242 GQVESLNAAVAASILMFETARQR 264 >gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 259 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 7/252 (2%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K++ + +K++ + G+ P +I L +++ L + L P Sbjct: 11 KQVMNLAKKAKARKETGLFVAEGLRMFKEI---PRDRIDSLFVSESFL-KNPEGRKLIGP 66 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 + V + QG+ D + LLM+LD + DP N+G Sbjct: 67 LAFEAVADDVFKTMSDTT-TPQGVLALVKQYAYTIDDILDRPGPALLMILDTIQDPGNLG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILR+ G+I + + + +S G++ +P++ + L L + G + Sbjct: 126 TILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRVPFVYTAALPQTLANIKKRGVR 185 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + E+E ++G E GL +T A + + M G +++LN + A Sbjct: 186 LYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMADAYVKIPMMGKVESLNAAVA 245 Query: 269 AAVALYITQNHF 280 A+V ++ Sbjct: 246 ASVLMFEAARQR 257 >gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 269 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 6/264 (2%) Query: 19 HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 HY + + R DY + + + + + AL + + Sbjct: 4 HYLESASDPRVSDYTTLTDVHLRKLREPREGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 LA LD PV +++I G +A P P + + ++ + Sbjct: 63 WLADLDDVFQAYPDVPVFIGKAALLEEITGFHLHRGAMAAMERPDPVPLPELLAGARRVA 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+ + Sbjct: 123 VLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182 Query: 197 DALQKMHSWGFQTIGLSSDS-KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAH 253 LQ + GF L + ++ D++AL+LG EG G+ P+T Sbjct: 183 QDLQVLKDHGFTVAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAVK 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AVA + + Sbjct: 243 IPMRNGVDSLNVAAASAVAFWELR 266 >gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 246 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 36/280 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+E+I + K H K R Q + G H V A Sbjct: 1 MKRIESVKNERIKAWKKLHSKKGR-------------------DQTGRFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALET 118 + K+ +L T A+ FP + V + ++ + QG+ Sbjct: 42 WKSDW-KVETVLTT----------ADDASLFPGECIGVSEAVMKEL-SETKSPQGIVAVC 89 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 T + ++ ++LD V DP N+G I+R+A+A G++ + +A + + Sbjct: 90 QKKQWHTPERLKGR--FVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIR 147 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GAL H+P + +L ++ + G G S P +Q ++ AL+LG EG+ Sbjct: 148 ATQGALFHLPV-YMGDLVTWIEALKESGIPVYGTSLQDATPHDQFHSQEQFALLLGNEGE 206 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G++ + AT + ++LNVS AA + L+ ++ Sbjct: 207 GVQSHLLDAATENLFIRQNRKAESLNVSVAAGILLFALKS 246 >gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 254 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 11/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + Q + + ++ + + ++LD + DP Sbjct: 66 LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVK--INQSEHFFFSYGKWVLLDDLADPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ + + Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + K L ++ALI+G E G+ P+ A ++ + G ++LN Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 242 AAVAAGIMIY----HFS 254 >gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 246 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + + D+ + H V V P+ + ++ Sbjct: 24 RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A P D + ++L+ V DP N+G ++R+A A DG++ Sbjct: 77 TDS-KTPQGIIAELAMPSLPLADL--KAGRYLILEDVQDPGNVGTMIRTADAAGLDGVLI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R +++ +A QK+ + I + S + Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N AL++G EG G+ + A +AH+ MPG ++LNV+ A + L+ Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] Length = 147 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 76/144 (52%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D + DPHN+GAILR+ DG+I TK S + + K+++GA +P ++NL+ Sbjct: 1 MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+ + G+ +G + + + + L++G+EG+G+ ++ M +L M Sbjct: 61 TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120 Query: 258 GIIKALNVSNAAAVALYITQNHFA 281 G I +LN S AAA+ +Y N Sbjct: 121 GSITSLNASVAAAILMYEVYNQRN 144 >gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059] Length = 269 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + I A ++ L V V P+ + + Sbjct: 47 RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 99 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 100 ADS-KTPQGIVAEVAFEREKIPAELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 156 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 157 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSRLPILASTLSSTSIDYREV 215 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 216 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 266 >gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] Length = 247 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A ++ + ++ +L V V + + ++ Sbjct: 25 RKGSYLIEGWHLFDEA-QKAHQEFVHIFLQEDMADKLRSLEG------VILVTNEVLKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E L+ ++ LL L+ V DP N+G ++R+A A G+ Sbjct: 78 TDS-PNPQGIIAEIKMPSPTVLEDMQGKYLL--LEDVQDPGNLGTLIRTADAAGFTGVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223 + + + + +S G+ H+P R N+ Q+ G I SD + Sbjct: 135 SDKSADLYNPKTLRSMQGSHFHLPVWR-DNVLQFCQQAKEVGVPVIASTLSDQSVDYQSI 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG G+ + E A ++ H+ MPG ++LNV+ AA + ++ Sbjct: 194 ETPESFILVMGNEGAGISSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244 >gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104] Length = 258 Score = 204 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ QN+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFQNN 257 >gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76] gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] Length = 258 Score = 204 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G H V A+ + + L + W A + V + ++ Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLN 82 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + QG+ L + ++ ++LD++ DP N+G ++R+A A G+ Sbjct: 83 SL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGV 140 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE 221 I K + + + +S G+ H+P ++ LT+ +Q G G ++ Sbjct: 141 ILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] Length = 331 Score = 204 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%) Query: 5 SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + K ++++ + A ++R D ++ + + + S + L + G + AL Sbjct: 25 TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 82 Query: 64 --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 PS +++ + R + +D+I HQG+ ++ P Sbjct: 83 GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQP 141 Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 142 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 261 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY N Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321 >gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae CGSP14] Length = 252 Score = 204 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 46 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 156 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ A + ++ Sbjct: 215 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 249 >gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] Length = 264 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 104/259 (40%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLD 82 + K ++ Q++ + L + GV V AL + R ++ A +N Sbjct: 7 QNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141 + V + ++ E QG+ D + L++V+D V Sbjct: 66 LELAQRKCAQTYQVTAHIMSQLSDTE-TPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGV 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+RSA A G++ K + ++ G+L H+P ++ ++ AL Sbjct: 125 QDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLPVVKAEDVDGALAY 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S G I +P+ + +A+++G EG G R ++ MPG + Sbjct: 185 LASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKHVKVNIPMPGRAE 244 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A ++ LY Sbjct: 245 SLNVAMATSIMLYEAVRQR 263 >gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150] Length = 246 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 12/234 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + I A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 ++ + + +S G+ H+P RI + D ++ S + + S + Sbjct: 134 SRLSADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLAQSSSLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ + Sbjct: 193 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246 >gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str. 13] gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13] gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] Length = 257 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100 H + + G+ V A+ + I ++ T++ + D + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + ++ E QG+ +++ +L++++D V DP N+G I+R+A A Sbjct: 82 LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK + +S G++ +IP + +L D ++ + G++ + S K Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254 >gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] Length = 246 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 109/277 (39%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] Length = 247 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 9/244 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101 + E+ L G H VS+ + S I + ++ R + + + Sbjct: 2 KKEDTVLAGFHAVSSRMKRDSSSIRIVYYDPKRRDQRMRRMIEEIEKAGIRLMQADNNRL 61 Query: 102 DKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 D E HQGL AP+ +D + + LL++LD V DP N GA LR A A Sbjct: 62 DG-FSHEVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +IT K S + +A K+++GA E +P +R++NL ++ ++ G IG + ++ Sbjct: 121 AGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + + + +LGAEG GLR T+ + +A + M G +++LNVS AA + L+ T Sbjct: 181 QKTIYEFDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 267 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 7/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + G V L++P + LL +A L D Sbjct: 17 DFRDLTTADRRPDRPGGRGLVIAEGTVVVRRLLDSPY-PVRALLGVPKRIAELADDLATV 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147 + P Q + +VG +G+ PT D V N+++L VL+ VND N+ Sbjct: 76 NA-PAYVTSAQIMSDVVGFHLN-RGVLAVADRAPKPTFDEVVANARVLAVLEGVNDHENL 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+ R+A AF DG++ + + + G + +P+ AL ++ +GF Sbjct: 134 GAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGF 193 Query: 208 QTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ S+ + E ++IAL+ G+EG GL + A S + M + +LN Sbjct: 194 HLAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLN 253 Query: 265 VSNAAAVALYITQN 278 V+ AAAVA Y Sbjct: 254 VATAAAVAFYELTR 267 >gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] Length = 267 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ ++ + S G V A+ L+A K D + Sbjct: 17 DYRDLRDVELRKSLESSEGLFLAEGEKVVRRAVTGGFEPRSFLMAPKWLDGLADVLES-- 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147 P + + +++ G VH+G P++++ + ++ ++VL+ + D N+ Sbjct: 75 TDAPCYVMSEKAAEEVTGFH-VHRGALASLKRRPLPSVESVLEGARSVLVLEDIVDHTNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS A D ++ R + K A GA+ +P+ R+ + +AL + + GF Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEALPSLSAAGF 193 Query: 208 QTIGLSS-DSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T+ L+ D +E+ ++ DK+AL+LG+EG GL P+ Q+ A A + M I +LNV Sbjct: 194 TTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMSAGIDSLNV 253 Query: 266 SNAAAVALYITQNH 279 + A AVA Y+T Sbjct: 254 AAATAVACYVTARR 267 >gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] Length = 257 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 119/266 (44%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S ++S + +KK+ + +K R ++ L G H V A+ + K Sbjct: 2 DRILSNQNSRV-------KAWKKLAT--KKGRQENR--TYLLDGWHLVEEAIKASA-KFH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT+ +A ++PH P + + I G QG+ E + Sbjct: 50 AVMATEEQMA--THLPDVPHGVPAFEISDEVAKHIAGTN-TPQGIFAEISLPDKTFDPTY 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD++ DP N+G ++R+A A G++ + + + S + ++ G+ H+ Sbjct: 107 VHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEV 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L + + + G +S + + + ALI+G EG+G+ + E Sbjct: 167 LN-GDLNEWADALTANNLSVYGSQLNESAQSYRAIEPSTQFALIVGNEGQGMSNELAEKT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + ++ Sbjct: 226 TTNLYIPIQGQAESLNVAIAGGILMF 251 >gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis Bt4] gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 262 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 107/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T AL+ Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A + V N+ +VL Sbjct: 61 HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1] gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1] Length = 267 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 17/276 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S ++ + KK+ N + + + G+ V AL++ + L Sbjct: 2 ITSSQNLRV-------KLVKKLAQRNFRQKERKLA----VEGIRFVEEALSSTWQTEILL 50 Query: 72 L---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 A + ++ D V V + ++ E QG+ D Sbjct: 51 YTDQACQAQRGKILLDLARDKGVEVLAVSDAIMKELSDTE-TPQGMLAVLRQPDYTLEDI 109 Query: 129 VR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R L++++D V DP N+G I+RSA A G+I K + ++ G+L H Sbjct: 110 IRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFH 169 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P I++S++ +AL+ + S G + P+ + + +I+ EG G R + Sbjct: 170 LPVIQVSDVNEALEYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGPREEIFR 229 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + MPG ++LNV+ A ++ LY K Sbjct: 230 YNHQKITIPMPGCAESLNVAIATSIILYEAIRQRHK 265 >gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160] Length = 246 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P RI + D ++ S + + S + Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLAQSSRLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] Length = 284 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + ++ AL + + L+ K+ + Sbjct: 26 FTRLTEAQLRNRLEPEKGIFIAESPKVIARALEAGYQPLSLLMERKHLEGQGREIMERCG 85 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P+L + ++ + VL+ + D N+GA Sbjct: 86 DIPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGA 145 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204 I RSA A D ++ T + + G + IP+ RI L ++++ Sbjct: 146 IFRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNA 205 Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD+ ++ DK+A++LG EG GL T + M + Sbjct: 206 LGFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVD 265 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A+AVA + + Sbjct: 266 SLNVAAASAVAFWQLRTR 283 >gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] Length = 246 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] Length = 180 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 7/169 (4%) Query: 116 LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + P L+ + + L++LD + DPHN+G+ILR+A A DGII +R + Sbjct: 1 MAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRA 60 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++V+AK+++GA++++P +R++NL + + G+ G + K Sbjct: 61 SGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN-YTNWDARGKC 119 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G EGKG+ P + + M G +++LN A + LY N Sbjct: 120 VLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 168 >gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 250 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 17/241 (7%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKI 104 ++ G + V L R+ F+LL + + L PV VP +D + Sbjct: 3 EWICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDSL 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMV-LDHVNDPHNIGAILRSAVAF 157 HQG+ALE + L + R LL + LD + +P N+G +LRSA A Sbjct: 63 S---ESHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEAV 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSD- 215 G++ + + + +++SGA EH+ + +NL AL+ +GL Sbjct: 120 GAHGVVIPLARAAGITPAVVQASSGASEHLLVAQ-ANLAQALETFKEEADAWVVGLEGSP 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +P ++ + + L++G EG+G+RP + + L M G I++LN + A ++ LY Sbjct: 179 ESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIMLYK 238 Query: 276 T 276 Sbjct: 239 A 239 >gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] Length = 268 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 15/265 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----L 81 ++ K + N+ + + + + G+ P ++ Q+ ++ A R L Sbjct: 8 SNPKIKNINKLNKNASFRKEEQVFIVEGIRMFREL---PVDRVKQVFVSETAYQRYGTEL 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLL 135 + V + + QGL D + N Sbjct: 65 PEKGITEQDRRLVVVSDSVFRSM-SQTKTPQGLLAVVERYHYTMEDLISVMDKRENGNTF 123 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+ + DP N+G I+R+A A GII + + +S G + +P++ + + Sbjct: 124 LVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVRSTMGTIFRVPFVYVDDP 183 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 A+ ++ G G D L A ++G EG GL + A + + Sbjct: 184 AKAVDRLKEHGIVVYGAHLDG-CDLYAGKLKRNNAFLIGNEGNGLTDELSSKADRLLRIP 242 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 M G +++LN + +A + Y Sbjct: 243 MAGQVESLNAAISATLLAYEAYRQR 267 >gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] Length = 244 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + ++G+ + A+ + +++ L T++ L VP + +D+ Sbjct: 2 EETVTIFGIRAILEAIESGKSLDRVWLLKGTQSKLFEQLLHVLRNKNIAFSFVPVERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K HQG L + ++ + + + + ++LD V D N GAILRSA A Sbjct: 62 FSSK--NHQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D + + S + + K+++G +P ++ +L D + + + T+G++ S Sbjct: 120 TGVDAVFISSTGSAPLNGDVVKTSAGGAFKVPISKVQHLKDVVYYLKAHDIPTLGITEKS 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L +AL+ GAE G+ + A L M + +LNVS A AV Y T Sbjct: 180 TETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYET 239 Query: 277 QNHF 280 Sbjct: 240 IRQR 243 >gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] Length = 257 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100 H + + G+ V A+ + I ++ T++ + D + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + ++ E QG+ +++ +L++++D V DP N+G I+RSA A Sbjct: 82 LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRSAHAAGAA 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK + +S G++ +IP + +L D ++ + G++ + S K Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254 >gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 268 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83 + K + +K+R + G+ V AL + QLL A L Sbjct: 11 QNPLIKNIGILLEKARERRKQGLFVAEGLIEVGMALRAGYE-VEQLLYDPEITSFAALQS 69 Query: 84 DANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 LP P K V ++KI + V +A+ P + + + L++VL+ V Sbjct: 70 LPKLPANLPQKLIEVSGSVMEKIAYRANVPNVVAVLKTPERALNNFSPGKNPLILVLETV 129 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+GAILR+A A + + + + +++ GA+ +P ++ DAL Sbjct: 130 EKPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTVPVFTVA-AADALNW 188 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + ++ P + IA ++G E G+ E A + M G + Sbjct: 189 LQMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEAAQQRVIIPMHGQVD 248 Query: 262 ALNVSNAAAVALYITQNHF 280 ++NVS + A+ L+ Sbjct: 249 SMNVSVSTAILLFEALRQR 267 >gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] Length = 246 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQTDLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] Length = 261 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 101/260 (38%), Gaps = 9/260 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K++ + +KS + + G+ +I + +++ A Sbjct: 7 NKKIKELMALIKKSSARKKQNAYIIEGIRMFREL---KKDEILDVFVSESFDALNKKL-- 61 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVN 142 + +P V I + V QG+ + + + L++LD + Sbjct: 62 ISEIYPGYEVVSDKIFESVSDTKTPQGVMVVVKRKEYTLENILTVRGEFPHNLLILDSLQ 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+ GII + + + +S G++ +P+I + +L D ++++ Sbjct: 122 DPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFIYVKDLKDIIEEL 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ S + + IA I+G E G+ + + + M G +++ Sbjct: 182 YARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKNKVKIPMLGEVES 241 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + A ++ +Y K Sbjct: 242 LNAAVAGSILMYEAARQRRK 261 >gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] Length = 246 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 108/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALESYREQL---AAFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+S+ L++ G + + +E+ + L++G EG+G Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSLMAESADQLVHISMKGKAESLNVAVAAGILIF 243 >gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 254 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 11/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + Q + + ++ + + ++LD + DP Sbjct: 66 LAYDESKLIKISQSVASHLSST-KNSQDIFMTVK--INQSEHFAFSYGKWVLLDDLADPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ + + Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + K L ++ALI+G E G+ P+ A ++ + G ++LN Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 242 AAVAAGIMIY----HFS 254 >gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 382 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 136/317 (42%), Gaps = 55/317 (17%) Query: 7 KKSEKIFSLKDSHYAKLRRNHR---------DYKKMQ--SFNQKSRHTSQ--------PE 47 K+S + K + K R R D + ++ F +K R +Q Sbjct: 62 KESSDLSKPKGTLLKKFWRQFRAQALPPGTTDLQGLRNDDFPRKKRVRAQVVLPVERSDG 121 Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTI 101 + L+G+ S AL R +L T A +R D PV+TVP + + Sbjct: 122 SEMLFGIAPCSLALATSKRSFSRLFLKAGVTPTTEAFSRQAED----RKIPVQTVPRKVL 177 Query: 102 DKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQ----LLMVLDHVNDPHNIGA 149 D++ VHQG+ LE PL + L+ + L + L+ + DP N+GA Sbjct: 178 DRL-SHGGVHQGVCLEATPLHPTGWTQAPAHRLEGATTEEAPQLLWLALEGIQDPMNLGA 236 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +LRSA DGI+ +++ S + V++K++SGA+E + +L L+ G++ Sbjct: 237 VLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSKEGWEV 296 Query: 210 IGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---- 258 +G + +K L+LG EG GL P+T+ M + PG Sbjct: 297 LGTVAHAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSPETKSLCRRMLTIA-PGRELE 355 Query: 259 -IIKALNVSNAAAVALY 274 I++LNVS AA + L+ Sbjct: 356 PGIESLNVSVAAGILLH 372 >gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] Length = 257 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100 H + + G+ V A+ + I ++ T++ + + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPELFLKINENIKLIQMNEAL 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + ++ E QG+ +++ +L++++D V DP N+G I+R+A A Sbjct: 82 LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK + +S G++ +IP + +L D ++ + G++ + S K Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254 >gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057] Length = 246 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A RL + V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSHLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 193 NSRESFALVMGNEGQGISPEMTEAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + P + AL I L+ K+ R PV T + Sbjct: 42 YEPAPGIFIAESPKVIERALETGCEPISLLMEQKDFDTRGKNIIAKCKSIPVYTAKLGVL 101 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++I G + L P + +N++ + VL++V +P N+GAI RSA A + D Sbjct: 102 EQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAIFRSAAALNMDA 161 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSS-- 214 ++ T S + + G + +P+ I N + +H +GF+T+ ++ Sbjct: 162 VLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRN 221 Query: 215 DSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 DS + ++++ +K+A+ILG EG GL +T + M + +LNV+ A+AVA Sbjct: 222 DSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAF 281 Query: 274 YI 275 + Sbjct: 282 WE 283 >gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773] Length = 257 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S ++S + + K+ + + + + L G H V A+ + K Sbjct: 2 DRILSNQNSRV-------KAWAKLAT----KKGRLENKTYLLDGWHLVEEAIKAKA-KFH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT+ +A + ++PH P + + I G QG+ E + + Sbjct: 50 AVMATEAQMA--EHLPDVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPDKTFDPSY 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DP N+G ++R+A A G++ + + + S + ++ G+ H+ Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLEV 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L + + + G G D + + Q + + ALI+G EG+G+ + Sbjct: 167 LN-GDLNEWTDALTANGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAAKT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + ++ Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251 >gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis TXDOH] Length = 262 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T AL+ Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A S + V ++ +VL Sbjct: 61 HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPASALPERVSDTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 270 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 ++ + S +++ S + GV V L + R + LL T L+ L D P Sbjct: 16 SFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-P 73 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA P P D ++ ++ + VL+ VND N+G Sbjct: 74 VDVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D ++ + + + G +P+ R+ +L ++ GF+ Sbjct: 134 SIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFR 193 Query: 209 TIGLSSDS-KKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ K L I +K+AL++GAEG GL + + M +LN Sbjct: 194 LLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLN 253 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 254 VATAAALAFYERAR 267 >gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] Length = 246 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H AL++ + + + A RL V + P + + Sbjct: 24 RTDSYLIEGWHLFEEALSSGAE-VISIFALPEYADRLSGCEQ------VNWLSPDLLRDL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E + + L L+ V DP N+G I+R+A A DGI Sbjct: 77 ADS-KTPQGIVAEVRLQQEVLPEKLSGKYLF--LEDVQDPGNLGTIIRTADAAGFDGIFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 ++ + + +S G+ H+P R++ + + + + Q++ Sbjct: 134 SEHSADLYNLKTLRSMQGSHFHLPIYRLA-TANLIDLAKKSDLPILASTLSDDSIDYQKL 192 Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K K L++G EG+G+ + A + H+ M G ++LNV+ AA + ++ Sbjct: 193 KGSKNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245 >gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC 13124] Length = 257 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 8/239 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100 H + + G+ V A+ + I ++ T++ + D + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNETL 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + ++ E QG+ +++ +L++++D V DP N+G I+R+A A Sbjct: 82 LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK + +S G++ +IP + N D ++ + G++ + S K Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVE-DNSLDFVKSLKKEGYKLVVSSLQGKNNF 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254 >gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV104] gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 246 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] Length = 251 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + G V R++ +++ +A PV+ +PP+ +++ E V Sbjct: 19 VEGRRAVLECFRAGRRRVRRVIVEAGREPEAIIEAAARAGVPVELLPPERFERVARTE-V 77 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ + P++ LD + + LL+V+DH+ DPHN+GA+LRSA AF DG++ + S Sbjct: 78 HQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSV 137 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKI 229 + + K A+G +E + + +S++ AL+++ + G ++GL +D+ + + +++ Sbjct: 138 PLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSVGLDADAATSVFSLTLATERL 197 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++GAEG+GL P + A + + + +LN S AA++AL Sbjct: 198 ALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAASIAL 241 >gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058] Length = 246 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L++V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFERKEIPSELSGRYLF--LENVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSSLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G EG+G+ P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 193 VNKESFVLVMGNEGQGISPEMTEAADLLVHISMKGQAESLNVAVAAGILIF 243 >gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115] Length = 246 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + + ++ A RL A+ V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAVSSGAE-LIRIFALAEYAERL---ADFSQMI---FVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREKIPEELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + + +S G+ H+P R+ + D + S G + + S +E+ Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIILAQSSGLPILASTLSSASIDYREV 192 Query: 225 -KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 GSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 245 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E+ +YG+ + A+ K++ + L + VP I+K Sbjct: 2 TEDTKIYGLRAIIEAIEAGKDIEKVYLQKELEGDLFKELESLIKSKRISSSYVPEIKIEK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156 + K HQG + AP+ + N S + ++LD ++D N GAI+R+A Sbjct: 62 L-SKGRNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFGAIVRTAEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 II +K S +A K+++GA+ +IP ++ ++ DA+ + S + + + + Sbjct: 121 TGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVKIVAATEKT 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ALI+G+EG+G+ P + A L + G I++LNVS A LY Sbjct: 181 DNTIYDVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVATGAFLYEA 240 Query: 277 QNHF 280 Sbjct: 241 IRQR 244 >gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 254 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 111/257 (43%), Gaps = 11/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + Q + + ++ + + ++LD + DP Sbjct: 66 LAYDEGKLIKISQSVASHFSST-KNSQDIFMTVK--INQSEHFFFSYGKWVLLDDLADPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ + + Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + K L ++ALI+G E G+ P+ A ++ + G ++LN Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 242 AAVAAGIMIY----HFS 254 >gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + ++ R + H V V P+ + ++ Sbjct: 25 RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLEDYADR------VSHFSMVTYVTPEILKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + S L+ ++ +VL+ V DP N+G ++R+A A DG++ Sbjct: 78 TDS-KTPQGIIAELA-MPSLPLENLK-VGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R +N+ +A QK+ + I + S + Sbjct: 135 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYEACQKLQNLDVPLIATTLSKESVSYKTV 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N AL++G EG G+ + A +AH+ MPG ++LNV+ A + L+ Sbjct: 194 EHNGNFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246 >gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 250 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 24/252 (9%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 N +YG+H + + N S KI +L K+ + + +K V + ++KI Sbjct: 2 NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISNEKNIKIKFVDKKFLNKI 61 Query: 105 VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ P L L+ + + ++LD + DP N+G+ +RSA F Sbjct: 62 T-NNKKHQGIVAYIKNSKILKEPFLLKMLEN-KKNYFFLILDGIMDPRNLGSCIRSAYIF 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S S+ + K ASG+L+ IP I ++NL + + + Q IG S ++ Sbjct: 120 GVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKAQ 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVA 272 + + IA+++G+E G+ +E ++ ++ +P LN+S A + Sbjct: 180 LDICNKKLKQSIAVVMGSENLGISRLVKENCDNILNIPTVKNNLP-----LNISVATGIC 234 Query: 273 LYI--TQNHFAK 282 ++ +N+ K Sbjct: 235 IFEIIRKNYLNK 246 >gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 254 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 11/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + Q + + ++LD + DP Sbjct: 66 LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINRPKHFAFSYGK--WVLLDDLADPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ + + Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + K L + ++ALI+G E G+ P+ + A ++ + G ++LN Sbjct: 182 DIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRAESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 242 AAVAAGIMIY----HFS 254 >gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 270 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 106/265 (40%), Gaps = 10/265 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNAL 78 +++ K++ ++ + + G+ A+ + K+ + T+NA Sbjct: 5 SKDNPKIKQLAKLYVSRKYRRETGLFVIEGLRGCVDAVRDDVEHDGLLKVDGVYYTENAF 64 Query: 79 ARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQL 134 + + P + + D+I ++ QG+ + L + D ++ Sbjct: 65 DSAEGFGEVLEKIPDSRRFVITREIADRISDTDSC-QGVFVTAKRLDKALSADGLKAGGK 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD + DP N+G ++R+A A DG++ + + +SA G++ + + Sbjct: 124 YLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVGSMPRVDIFVEKD 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + G +T D ++Q A+++G EG+GL + E + + Sbjct: 184 FEAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGCAVVIGNEGRGLSQEHVEMCSDRVTI 243 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G I +LN + AA + L+ Sbjct: 244 KMYGHIDSLNAATAATIFLWEMTRR 268 >gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] Length = 208 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 9/198 (4%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHV 141 H + +D++ G + HQG+AL T+ + + L++ LD V Sbjct: 6 HGIALMQATRGELDRMTG-GSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALDKV 64 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI+RSA AF G++ R S S +A K+++GA IP +NL AL K Sbjct: 65 TDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGK 124 Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G+ +GL+ ++ + + +++G+EG GL T+++ +A + + + Sbjct: 125 FAAAGWMIVGLAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDV 184 Query: 261 KALNVSNAAAVALYITQN 278 ++LN S AA++ALY Sbjct: 185 ESLNASVAASIALYEAAR 202 >gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] Length = 332 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 15/290 (5%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAA 60 + + ++ K A+ + + + K R ++ L G + V+ A Sbjct: 35 KGPTPRAENRVGHPKARAKARAESRAAQPTRAKQLEKIKRRFDVPEDHEILCGRNAVAEA 94 Query: 61 LNNPSRKIFQLL--ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 S I ++ + + RL PV +D + A HQG+A+ Sbjct: 95 -AYASVPITRVFMAVSAQSDDRLGAVVRRAALLGAPVLETTKLDLDALTDS-ATHQGVAI 152 Query: 117 ETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 E T A+ ++ LL+ LD V DPHN+GA+LRSA AF DG+I +R S Sbjct: 153 EVPAYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRS 212 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-K 228 +A + K ++GA + R +NL L+++ G +GL +E D Sbjct: 213 VGVNATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVEDLTLADSP 272 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ GAEG GL +ET +A + + +++LN + A ++LY Sbjct: 273 LVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDR 322 >gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 268 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 105/248 (42%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 20 LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 80 VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ + L + ++ GF+T + Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLDGTIGDLNKLGFRTAAM 196 Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D ++ I ++A+++G EG+GL KT A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAA 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWQLR 264 >gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] Length = 257 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100 H + + G+ V A+ + I ++ T++ + D + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + ++ E QG+ +++ +L++++D V DP N+G I+R+A A Sbjct: 82 LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK + +S G++ +IP + +L D ++ + G++ + S K Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E K+ + +G EG G+ K + A + MPG ++LNV+ A ++ +Y Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254 >gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] Length = 262 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A +P L A R + +VL Sbjct: 61 HEEARGIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] Length = 271 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 20/280 (7%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 E+I SL+++ +++ ++ + + G H V AL++ Sbjct: 3 EEEIRSLQNARV-------KEWAALRRGKE----RRRRGTFLAEGPHLVGEALHSGLGIE 51 Query: 69 FQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETA----PLL 122 L ++ + PV+ V + ++++ + QG+A P+ Sbjct: 52 VVLFDPRDQTPEVASLVEEARGKGCPVQPVDRRVLERVC-EVITPQGIAAVVRIPERPMP 110 Query: 123 SPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++A L++ LD + DP N+GA+LR A A G++ + + S +S+ Sbjct: 111 GFAVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSM 170 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA +P R L + + + H+ G + + + ++ N + ++LG EG+G+ Sbjct: 171 GAAFTVPI-RQGRLVNMIGEWHAKGVEPVETAVGEGVRYDRWNWNIPVMIVLGNEGRGIS 229 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 P+ + H+ MPG ++LNV+ AAA+ LY + H Sbjct: 230 PEVRHLCRGKVHIPMPGGGESLNVAVAAALLLYEARRHRG 269 >gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae OXC141] gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] Length = 246 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ A + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243 >gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei DM98] gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 14] gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 9] gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei B7210] gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 7894] gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei NCTC 13177] gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei BCC215] gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344] gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1] gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229] gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668] gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106a] gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247] gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] Length = 262 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A +P L A R + +VL Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056] Length = 246 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A RL + V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSHLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 193 NSRESFALVMGNEGQGISPEMTEAADILVHISMNGQAESLNVAVAAGILIF 243 >gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 221 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 13/220 (5%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 NQ+S+ + F+YG H AL K+ K V+ Sbjct: 2 NQQSK--APANTDFIYGHHASVEALKAGQTINKVLLQSGLKGKHINEILQLAKKKQLVVQ 59 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147 +VP +D+I + HQG+AL A TLD + + ++LD + DPHN+ Sbjct: 60 SVPKSKLDEI-SEGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPHNL 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+ILR+A A G+I KR + +A +AK ++GA+EH+P +R++NL + + + G Sbjct: 119 GSILRTADAAGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKERGL 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 G + + AL++G EGKG+ P ++ Sbjct: 179 WIFGTDM-AGEDYRHLDATGPTALVIGNEGKGISPLLKKK 217 >gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium spinosum DSM 4136] Length = 193 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 79/151 (52%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L++VLD + DPHN+GA LR+A A CD ++ K + S + + A G E++P Sbjct: 35 KPNPLVLVLDCIQDPHNLGACLRTADAAGCDLVVMPKDKTAPISDTVIRVACGGAENVPI 94 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++NL A+ K+ G +G + K+ + I +++GAEG+G+R T E Sbjct: 95 ARVTNLARAMDKLKDLGVWFVGTEDEGKQSIYDVDLKGPIGIVMGAEGEGMRRLTGERCD 154 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G + LNVS A V L+ Sbjct: 155 FLVKIPMTGQVPCLNVSVATGVCLFEVVRQR 185 >gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] Length = 274 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 7/257 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + AL+ I L+ K+ ++ Sbjct: 18 YARLTEGQLLNRHEPDKGVFIAESPKVIERALDAGCVPISMLMEKKHVESQAREIIQRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV + ++ G L P L + ++ + VL++V +P N+GA Sbjct: 78 EIPVYAAEFDVLTQLTGFHLTRGMLCAMYRPPLPGPEEICEGARRIAVLENVMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205 I RSA A + DG++ T S + + G + IP+ R+S + + + Sbjct: 138 IFRSAAALNMDGVLLTSACSNPLYRRAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLREL 197 Query: 206 GFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF T ++ D ++ + +K+A+ILG EG GL T + M + + Sbjct: 198 GFATAAMALNDDSVSIDDSGLMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDS 257 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A+AVA + Sbjct: 258 LNVAAASAVAFWQLGRR 274 >gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 91] Length = 262 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A +P L A R + +VL Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IERLS---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae TIGR4] gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4] gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV200] Length = 246 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNTKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] Length = 286 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 12/233 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + E+ + G H AL + +R I ++ A RL A V P+ + + Sbjct: 64 RSESYLIEGWHLFEEALASQAR-ILRIFALAEYEERL---AAFSQTI---FVSPEILSDL 116 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + + + L L+ V DP N+G I+R+A A G+ Sbjct: 117 ADS-KTPQGIVAELAFEEQNIPEKLEGAYLF--LEDVQDPGNVGTIIRTADAAGYQGVFI 173 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223 + + + +S G+ H+P R+S D L Q + S+ ++ Sbjct: 174 SSHSADIYNLKTLRSMQGSHFHLPIYRVSR-EDMLALARQSDLQILASTLSEYSVDYQKV 232 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K++ L++G EG+G+ + E A + H+ M G ++LNV+ AA + ++ Sbjct: 233 EKHEDFLLVMGNEGQGISQEMTEVADVLVHISMKGQAESLNVAVAAGILMFAL 285 >gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 313 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%) Query: 5 SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + K ++++ + A ++R D ++ + + + S + L + G + AL Sbjct: 7 TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 64 Query: 64 --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 PS +++ + R + +D+I HQG+ ++ P Sbjct: 65 GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQP 123 Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 124 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 183 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 184 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 243 Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY N Sbjct: 244 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 303 >gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora erythraea NRRL 2338] Length = 287 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 4/249 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V + +P + LL + + L D P Sbjct: 37 DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRRRIEALA-DLLAP 94 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P P + +VG LA+ V S+ L VL+ V D N+G Sbjct: 95 LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 154 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ R+A A DG++ + S + + G + +P+ R+ + D L + GF+ Sbjct: 155 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 214 Query: 209 TIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ D+ E + + +A++LG+EG GL + A + M G + +LNV+ Sbjct: 215 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 274 Query: 267 NAAAVALYI 275 A A+A + Sbjct: 275 TAGAIAFHA 283 >gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 270 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 9/269 (3%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I L D +L DY +++ + + R ++ G V A+ + Sbjct: 3 QIVRLDDPSDPRL----HDYTELRDVSLRRRLETERGLFIAEGEKVVRRAVESGHAPRSF 58 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV 129 L+A + D P + I+ + G VH+G LA P P + Sbjct: 59 LMAPRWIDG--LGDVIDGTDAPCYVLEESVIEHLTGFH-VHRGALAALERPPARPAATVL 115 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++VL+ + D N+GAI RSA A D ++ + R + K + GA+ +P+ Sbjct: 116 AGARRVVVLEDLVDHTNVGAIFRSAAALGWDAVLLSPRCADPLYRRSIKVSMGAVFRLPW 175 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R+ + + + GF + ++ + P+++ + +AL++G+EG GL + + Sbjct: 176 ARVDDWASTPELLADAGFTAVAMTLGEGAVPIDEVDTDRPLALVVGSEGHGLTRHWESAS 235 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M I +LNV+ + AVA + + Sbjct: 236 PVRATIPMAEDIDSLNVAASVAVACWQLR 264 >gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] Length = 276 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 22/289 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D I G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG+GL + E A + M +LNV+ A+ +AL + F+K Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274 >gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 254 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 11/257 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + QK ++ + + G H V AL S K ++LAT+ AL+RL Sbjct: 8 NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + Q + + ++LD + DP Sbjct: 66 LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINRPKHFAFSYGK--WVLLDDLADPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + + + +S G+ H+ I+ ++L DA+ + + Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + K L ++ALI+G E G+ P+ + A ++ + G ++LN Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRAESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 + AA + +Y HF+ Sbjct: 242 AAVAAGIMIY----HFS 254 >gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1, mitochondrial-like [Pongo abelii] Length = 353 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 28/253 (11%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 L+G+ AL R + +LL A L PV Q +D Sbjct: 50 ELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + + VHQG+ +E +PL + QL +VLD + DPHN GA+LRSA Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRSAHF 168 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214 D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228 Query: 215 ------DSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261 S+ P+ + + + L+LG EG GL + Q + + + +P ++ Sbjct: 229 SAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288 Query: 262 ALNVSNAAAVALY 274 +LNVS AA + L+ Sbjct: 289 SLNVSVAAGILLH 301 >gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 254 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 11/238 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F+ G V AL + + ++ + D + H + I Sbjct: 23 RYEEGMFFVEGTTNVLEALKSDFEIEYIVMGEGVKIDIPKGDFEIVH-------TTERIF 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K + Q + ++ + ++ D++ DP N+G I+R+A AF I Sbjct: 76 KKISDTVTPQMVMAIIKIPKYVENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I ++ L K+ G + ++K + + Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIAATS--QILLKLKQRGIKVFATYLKAQKLVHE 193 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DK+A +LG E KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 194 CNISDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249 >gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087] Length = 269 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + I A ++ L V V P+ + + Sbjct: 47 RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 99 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 100 ADS-KTPQGIVAEVAFEREKIPAELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 156 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 + + + +S G+ H+P R+ + D ++ S + + + + Sbjct: 157 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLPILASTLSLTSIDYREV 215 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 216 DSKESFVLVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 266 >gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] Length = 260 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 16/255 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 Q + ++G + V+ L + ++ + A+A VK VP Sbjct: 8 QAPQHTDTLVWGKNPVTELLKSGETVDTVYLADSLPQAVAGYYTALAKQSGAVVKRVPGN 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 + K+ G HQG+A A + +L+ + + L++ D V DPHN+GAI+R Sbjct: 68 KLQKLCGTPD-HQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPHNLGAIIR 126 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA G++ KR + + K+++GA +P R++NL A++ + Sbjct: 127 SAYLCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEHNVFVYCA 186 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNA 268 PL + + +AL+LG+EG G T++ + L M + + NVS A Sbjct: 187 DLGGA-PLSRTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATGVDSYNVSVA 245 Query: 269 AAVALY-ITQNHFAK 282 A + Y + + A+ Sbjct: 246 AGILCYDVLRRRTAQ 260 >gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae NEM316] gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316] Length = 247 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + T+ A+ RL P V V + ++ Sbjct: 25 RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRL----RKPEEAIV--VTDDVLKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + +VL+ V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R+ + + + G I + S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 194 PKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414] gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414] Length = 261 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 105/270 (38%), Gaps = 15/270 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + SL++S ++R+ H ++ + + L G H + A + Sbjct: 2 LTSLQNSLVKQIRKLH-----------STKERHKQQLCLLEGTHLLQEACVVNYPLVTVC 50 Query: 72 LATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + A + W+A H V+ V + + I G+ ++ T V Sbjct: 51 CTPEWQTAHPELWEAACSHSDRVEIVSKEILAAIA-TTVQPDGVVATAQRAINQT--QVP 107 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L++ L+ + DP N+G I+R+A A G+ + +S + ++++G + Sbjct: 108 FTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWFRVATA 167 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L +Q+ G Q + + ++LG EG GL P A Sbjct: 168 VSQDLKATIQQSQQAGMQVVATLPTANLTYWDVDWRKPSLILLGNEGAGLSPDLASMADK 227 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++LNV+ AAA+ +Y Q Sbjct: 228 QVKIPLSSGVESLNVAIAAALMMYEAQRQI 257 >gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 246 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis EO147] gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis C6786] Length = 262 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPELCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L + V ++ +VL Sbjct: 61 HAEAREIVGRVEPARLVTLPDALFGQLSNVVNGVGLLLLVERPAPALPERVVDTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + ++ Sbjct: 119 DGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDVDTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + ++ + + + G EG G+ + ++ AT + PG Sbjct: 179 IERLA---VPVALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAA+ L+ Sbjct: 236 GMESLNVAAAAAICLFEQCRQ 256 >gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 255 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 113/275 (41%), Gaps = 25/275 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I+ ++++ +D+KK+ + + + L G H V A Sbjct: 1 MDIITSSSNQRV---------------KDWKKL----SQKKARIKQGKYMLDGWHLVKEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++L T++ R + + +P V + K + + QG+ Sbjct: 42 ILFDQ-PISEILVTQDFKHRNELE--VPDNVEVIEISDNV-AKHLSETPSPQGIFAVVNL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + + LD V DP NIG ++R+A A G++ + + + ++ Sbjct: 98 PENAEEKPKKATGAWLFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ NL + ++ G D + +Q ++ AL++G EG G Sbjct: 158 QGSQFHLKLCS-GNLIEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K + + ++ + G ++LNV+ AA + ++ Sbjct: 217 MSEKLLKETSLNLYIPIKGHAESLNVAVAAGILMF 251 >gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] Length = 279 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 104/273 (38%), Gaps = 23/273 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ + K++ + G+ ++ L T++ + + Sbjct: 6 SNKQVKRVVNLRAKAKARREENCYVAEGLRMCREL---SPDQVEMLYVTED-FGSVPGNR 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------------- 131 FP +TV ++ + QG+ + + Sbjct: 62 RWLAGFPHETVSDVVMNYMADT-KTPQGVLAVVKQRHYRLEELLPQAGKQIPKTSVPVGK 120 Query: 132 ----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 LM+L+ + DP N+G ILR+ G++ + + + + +S G++ + Sbjct: 121 NPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRV 180 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ + +L+ AL ++ S G + +QE I ++G E GL +T Sbjct: 181 PFVYVDDLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAM 240 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G +++LN + A++V ++ Sbjct: 241 ADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273 >gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5] gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5] Length = 240 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 109/239 (45%), Gaps = 9/239 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++G + + AL R + ++ ++ + + V+ + + ++++ Sbjct: 2 EKKFVIWGRNPIIEALR-AGRNLEKIYVAHDSHPPKELLELAKKRGVKVQRISRKKVEEL 60 Query: 105 VGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G + QG+ +P+ + + + +V+DH+ DP N+G +LR+ Sbjct: 61 AGTKKT-QGVVALLSPVNYVSPHELFKECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGG 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G + +K + + + K++SGA+ H+ ++S+L+ L+ G + K Sbjct: 120 VGALISKDRTSPINETVVKASSGAVFHLKISKVSSLSRELKNFQKMGGWVFAVE-KGGKD 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + +AL+LG+E KG+ + + + + M G + +LNV +A A+A++ T Sbjct: 179 IREVDIPLPVALVLGSEDKGVSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAK 237 >gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162] Length = 258 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + NQK++ + G A P I ++ ++ L + Sbjct: 6 QNTQVKNVIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKVYVAESLLDD-EEIM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144 F V ++ + QG+ D ++ + LLMVL+ + DP Sbjct: 62 QKAGRFSWDAVENSVFRQMSDTQ-TPQGVLTVLRQPSYQLEDLLKQEAPLLMVLEDLQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G I+R+ G+ TK + + ++ G++ IP+ + ++ QK+ + Sbjct: 121 GNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVEDVVLLKQKLQN 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + K ++E + A ++G EGKGL + + A + + M G +++LN Sbjct: 181 CGIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 + A + +Y Sbjct: 241 AAMAGGILMYEAARQR 256 >gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] Length = 246 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQR 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 264 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 105/252 (41%), Gaps = 6/252 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++ + + + L G H V A+ + +++ + Sbjct: 10 QNQQIKELKKLFTR-KGRKKAGQYLLEGPHLVEMAVKADAEIQMIYYVPESSHQNVMQIQ 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L P+ V P+ + + HQ + + +LD + ++ L++LD V DP Sbjct: 69 ALKADLPLTQVTPEVAKALSQTD-HHQDIFAVANIPQAKSLDIDQLTKGLLILDQVQDPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A AF ++ + + +S G+ + + +L + + ++ Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSMQGSHFAVNTYEV-DLVEVIPQLQEA 186 Query: 206 GFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ ++ K AL++G EG G+ T + A + ++ M G ++ Sbjct: 187 GYFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSGSAES 246 Query: 263 LNVSNAAAVALY 274 LNV+ A A+ +Y Sbjct: 247 LNVAVAGAIVMY 258 >gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 595 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 132/336 (39%), Gaps = 64/336 (19%) Query: 1 MNLISKKKSEKIF----SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF------ 50 M +I + +KI D R R + K +++ +K+ E+ Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKT-WKEATESTIPKIVGE 298 Query: 51 -LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTV 96 +YGV V AAL+ R+ + L + + L +K + Sbjct: 299 GIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDL 358 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++ +V HQGL L+ +PL L P L L + LD V DP N+GA Sbjct: 359 SKHDLN-MVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGA 417 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA F G++ + S S V++K+++G+LE + N+ L G+Q Sbjct: 418 IIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQV 477 Query: 210 IGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------------- 255 +G S + PL + L+LG+EG GLRP + + T + + Sbjct: 478 LGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVE 537 Query: 256 ------MPGI-----------IKALNVSNAAAVALY 274 M +++LNVS AA V L+ Sbjct: 538 DVDTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLH 573 >gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330] gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513] gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1] gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1] gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99] gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 276 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG+GL + E A + M +LNV+ A+ +AL + F+K Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274 >gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 278 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I LL L L D + Sbjct: 27 DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLASRFDPI-ALLGVDRRLEELAGDLD-G 84 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D + +S+ + VL+ VND N+G Sbjct: 85 VDVPYYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHSRTVAVLEGVNDHENLG 144 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L + GFQ Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204 Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + L + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 205 LISLTPNPGAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 265 AAAMAFYERVR 275 >gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] Length = 273 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 10/229 (4%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 A I L+ ++ + PV T + ++ G L Sbjct: 47 AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L +++ +++L++V +P N+GAI RSA A + D I+ +K S + Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166 Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALIL 233 + G + IP+ + + D + ++ G++ + ++ D ++ E DK+A+IL Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTDRSVSIDDEALMSEDKLAIIL 226 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG GL +T + + M + +LNV+ A+AVA + AK Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271 >gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201] Length = 275 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 9/274 (3%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 SE+I L D ++ DY + + + + + + AL+ R Sbjct: 6 PLSERIVELSDPADPRV----ADYTSLTDVSLRRKLEPERGLYLAESSKVLRRALDAGHR 61 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + L L D + PV + +++I G +A P P Sbjct: 62 P-RSFFMAEKWLDGL-RDVLEAYDVPVYVGADEVLEQITGFHLHRGAMAAMHRPEPLPLE 119 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + +++ + +L+ + D N+GAI RSA A D ++ T R + + + G + Sbjct: 120 SVLASARRVAILEDIVDHTNVGAIFRSAAALDVDAVLVTPRCADPLYRRAVRVSMGTVFQ 179 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPK 243 +P++R+ + T LQ++ GF T L+ SD ++ +K+ALILG EG+GL Sbjct: 180 VPWVRLEHWTADLQRVKDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAA 239 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ A+AVA + T+ Sbjct: 240 TLHHADRHVIIPMSHGVDSLNVAAASAVAFWETR 273 >gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] Length = 245 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + I + + RL V V P+ + ++ Sbjct: 23 RKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKEL 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E + L+ L+ + DP N+G I+R+A A DG+ Sbjct: 76 TSS-PNPQGIIAEVKLCQQALPTSYAGKYLI--LEDIQDPGNLGTIIRTADAAKFDGVFL 132 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R +++ Q M + + S+ ++ + Sbjct: 133 SEKSADVYNQKTLRSMQGSHFHLPIWR-TDIYQVSQVMQQQKIPVLATTL-SQDSIDYKD 190 Query: 225 KNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL+LG EG+G+ P+ A + H+ MPG ++LNV+ AA + ++ Sbjct: 191 LSARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242 >gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200] gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200] Length = 246 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTAEAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ A + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243 >gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 266 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 102/253 (40%), Gaps = 11/253 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANL 87 K + Q SR + + L G+H + L + ++ + A + + +L Sbjct: 17 KALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGE-LSRIYLNEAAAGKPEVRRLLDSL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P V ++P + K+ + G L +P SP + ++ ++L+ + DP N+ Sbjct: 76 PPGSTVVSLPEAVMSKVTALASA--GELLALSPRPSPEAPPAQAAR--VMLEDIQDPGNL 131 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A A + +K S + ++ GA + ++L ++ +G Sbjct: 132 GTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGAHFALRIHEHADLAG---ELSRFGG 188 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + L +A + G EG G+ A + + MPG ++LNV+ Sbjct: 189 RKLVTHLEGSSSLYGHDLTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHAESLNVAM 248 Query: 268 AAAVALYITQNHF 280 AA V L+ Sbjct: 249 AATVCLFERVRQL 261 >gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942] Length = 258 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 12/261 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R + K+++ +Q ++ Q L G H + A+ + Q+ AT + + Sbjct: 4 SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNW-PLLQVCATPACRINTRN 61 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV- 141 + P +TV + + G+ + + + ++ D V Sbjct: 62 SGSRAIQAAPEQTVSDDLLAYLC-TTVNPDGVVANRSTAAPAS-----TAHFSLLADAVE 115 Query: 142 --NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 DP N+G I+R+A A DG+ T + + ++++G +P ++L L Sbjct: 116 TLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTL 175 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G+Q + + L Q L+LG EG GL P A S + Sbjct: 176 RSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAG 235 Query: 260 IKALNVSNAAAVALYITQNHF 280 +++LNV+ AAA+ LY + Sbjct: 236 VESLNVAIAAALLLYEARRQR 256 >gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Equus caballus] Length = 355 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 28/270 (10%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---- 87 +++ + S+ L+G+ AL R++ +LL A L Sbjct: 35 RLRLDDLAPTVRSETGLELLFGLSPCLLALQAARRRVARLLLQAGRSGLQGERAELLRAA 94 Query: 88 -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLD 139 PV + +D + + VHQG+ +E +PL R ++ L ++L+ Sbjct: 95 EAQDIPVLRPRRKQLDALCHYQ-VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILE 153 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+GA+LRSA D +IT++R S + V++K+++GA+E + +L L Sbjct: 154 GLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFL 213 Query: 200 QKMHSWGFQTIG--------LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETA 248 Q G+ G S S+ P+ + + + L+LG EG GL + Q + Sbjct: 214 QVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASC 273 Query: 249 TSMAHL-H---MPGIIKALNVSNAAAVALY 274 + + +P +++LNVS A + L+ Sbjct: 274 QVLLTILPGRQLPPGLESLNVSVATGILLH 303 >gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] Length = 252 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 46 VQAGV-TIEKVFALESYRDQL---VAFPQTI---WVSEEILLDLADTQ-TPQGIVAVIQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 98 EEVGLPDLHQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ L +++ + + S K + + L++G EG+G Sbjct: 156 QGSHFHLPIYRMP-LVSFVEEAKKSNLPILATTLSRESKDYRELSSLENFVLVMGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 215 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 249 >gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] Length = 246 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ L +++ + + S K + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMP-LVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 267 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + +++ + GV V L++ LL +L D Sbjct: 17 DFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTP-SALLGVARRYDQLAADLA-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + +IVG LA+ P + V ++ + VL+ VND N+G Sbjct: 75 VDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ R S + + G + +P+ R+ D L + GFQ Sbjct: 135 SMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQ 194 Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I ++ D + + L + +++AL+LGAEG GL + A + M +LNV+ Sbjct: 195 LIAMTPDPAARNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERVR 265 >gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] Length = 270 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 4/251 (1%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + V AL+ I L+ ++ + Sbjct: 18 YARLSEGQLLNRHEPEKGIFIAESPIVVERALDAGCEPISILVEDRHIKNQAKNIIERCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ T P + I G + L P L + ++ + + VL+++ +P N+GA Sbjct: 78 NIPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQ 208 I RSA A + D ++ T S + + G + IP+ I ++ +H+ GF+ Sbjct: 138 IFRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFK 197 Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T ++ D+ ++ +K+A+ILG EG+GL T ++ + M + +LNV Sbjct: 198 TAAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNV 257 Query: 266 SNAAAVALYIT 276 + A+AVA + Sbjct: 258 AAASAVAFWEL 268 >gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] Length = 244 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 117/250 (46%), Gaps = 19/250 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N++ K+ QK + + + G H V A + + +L + Sbjct: 6 NNKKIKEYAKLIQK-KERDKTNLFLVEGEHMVKEA--YNANALQELFILEG--------I 54 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P F +TV Q ++K+ + + + + + L P + +++LD+V DP Sbjct: 55 ECPIQFNYETVTQQVLNKLSNQNSNSKMIGVCKKLNLKPVKEEN-----ILLLDNVQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A +F D I +K + + +S+ GAL +IP I+ ++L + ++K+ Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQ-TDLVEEIKKLQER 168 Query: 206 GFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + K K L+ + K A+++G EG+G+R + + + + + M ++LN Sbjct: 169 NIEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEME-TFESLN 227 Query: 265 VSNAAAVALY 274 V+ A ++ +Y Sbjct: 228 VAIATSICMY 237 >gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae 2603V/R] gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 247 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + T+ A+ RL V + ++ Sbjct: 25 RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDVLKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + +VL+ V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R+ + + + G I + S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 194 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 284 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 12/259 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD---A 85 Y ++ ++R + ++ AL + + L+ ++ A AR + A Sbjct: 17 YARLTEAQLRNRLEPERGLFIAESPKVIARALAAGMQPLSFLMERQHLAAARTLIEGCTA 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV T + + ++ G E L P L D + N++ + VL+ + D Sbjct: 77 EDGSDIPVFTGSTEILSRLTGFELTRGVLCAMRRPALPSVEDLLANARRVAVLEGIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQ 200 N+GA RSA A D ++ T + + G + +P+ RI D L+ Sbjct: 137 NVGAAFRSAAALGIDAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGLE 196 Query: 201 KMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++H+ GF T ++ SD+ L N +++A+I+G EG GL +T + M Sbjct: 197 RLHACGFSTAAMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCDFTVRIPMR 256 Query: 258 GIIKALNVSNAAAVALYIT 276 + +LNV+ A+AVA Y Sbjct: 257 HGVDSLNVAAASAVAFYQL 275 >gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 255 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 7/249 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + + + + + G H AL + L+ + WD Sbjct: 8 QNSLVKHWKKLSTTRKERDKFAEFLVEGFHLTEEALRK-KDLVKSLIVREGVDIPEGWDI 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +V +I E QG+ A T D ++ L+++D V DP Sbjct: 67 ---EGVAHYSVTATVAKEISETEHT-QGIFAHCA-QPEFTEDEQKSWTKLLMIDAVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A D +I K + + +SA G+ I ++ L + ++ + Sbjct: 122 NIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVK-GELMEWTEQTKAS 180 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G + + P+ + ++ ALI+G EG G+ P + + + G ++LNV Sbjct: 181 GIPIFGTALQNSTPVHEAKTLEQFALIVGNEGSGVDPVLLQQTDQNLMVPLYGNAESLNV 240 Query: 266 SNAAAVALY 274 + A + LY Sbjct: 241 AVATGILLY 249 >gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 270 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 4/249 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V + +P + LL + + L D P Sbjct: 20 DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRRRIEALA-DLLAP 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P P + +VG LA+ V S+ L VL+ V D N+G Sbjct: 78 LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 137 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ R+A A DG++ + S + + G + +P+ R+ + D L + GF+ Sbjct: 138 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 197 Query: 209 TIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ D+ E + + +A++LG+EG GL + A + M G + +LNV+ Sbjct: 198 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 257 Query: 267 NAAAVALYI 275 A A+A + Sbjct: 258 TAGAIAFHA 266 >gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 276 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 13/251 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLD--WDANLPHPF 91 ++ + + G ++V+ LN +R + L T++A R D L Sbjct: 19 RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGA 149 V V + I + +A + LL L A + ++LL V VN+P N G Sbjct: 79 SVALVTDRAIKALSDTVTPPGLVA--VSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGT 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++R A A D I + + +S++G+L H+P +R + ++++ + G Q Sbjct: 137 VIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQI 196 Query: 210 IGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + ++D + L++ + A + G E GL P A + + G ++LN++ Sbjct: 197 LATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLAT 256 Query: 268 AAAVALYITQN 278 AAA+ LY + Sbjct: 257 AAAICLYASAR 267 >gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 271 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 11/251 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY ++ + R + G T+SA L++ LL L L Sbjct: 17 RDYHNIREKDLVGRQ----QQFIAEGKITLSALLHSKEFSALSLLIVAKRLPGLLPLLEK 72 Query: 88 PHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVN 142 P P+ VP + +D I G VH+G+ +T P L L + L++VL ++ Sbjct: 73 TQPPCPIYCVPQKVMDDITGFH-VHRGILGIGKRKTLPSLQSFLKNLPEKALILVLCGIS 131 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 + N+G+I R+A AF+ GII K + ++GA +PY + +++ D + + Sbjct: 132 NHDNMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDIIAAL 191 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H F LS + L Q K + ALI G EG GL P + +T++ + M + Sbjct: 192 HDENFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDS 250 Query: 263 LNVSNAAAVAL 273 LNV+ A+ +AL Sbjct: 251 LNVATASGIAL 261 >gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 18/273 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+++ ++R+ HR +R + + G H + AL Sbjct: 2 ISSVQNPLIKQIRKLHR-----------TRERQEQNLSLIEGTHLLETALALNCSLETVC 50 Query: 72 LATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 K + + + V+ V P+ + + G+ A L V Sbjct: 51 YTEKWQQRQAELAEKFQNQAKRVEIVSPEVLASLA-TTVNPDGVIATIA---RDHLHPVP 106 Query: 131 NSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L +VL+ + DP N+G I+R+AVA GI + ++ + +S++G P Sbjct: 107 QNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSP 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S+L+ ++K + G + I + K + ++LG EG GL P+ A Sbjct: 167 LVVESDLSALVKKYQAQGVKAIATLPTATKSHWEIDFTRPTLILLGNEGAGLSPQLAALA 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +++LNV+ A AV LY + + Sbjct: 227 DETVKIPLFGGVESLNVAIATAVILYEARRQLS 259 >gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] Length = 248 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 7/233 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L +YG + V A+ + L+A + ++ VP + I+++ G + Sbjct: 4 LIIYGRNPVLEAIRSGRSVEKVLVAHDSHPPHQLVKLCKEKNIKLQKVPRKKIEELAGTK 63 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 QG+ +P+ + + L+VLDH+ DP N+G +LR+ G + Sbjct: 64 KT-QGVLAILSPVHYVKEEELFRKTLERGSFLLVLDHLTDPQNVGNLLRTCEVLGGVGAL 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + + K++SGA+ H+ R+S+L +L+ G + + K + Q Sbjct: 123 LPKDRSCPINQTVIKASSGAVFHLLLSRVSSLRRSLENFKRVGGWIVVVE-RGGKDIRQV 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+LG+EG+G+ E A + + M G I +LNVS+A A+A++ T Sbjct: 182 DIPLPCALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWET 234 >gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] Length = 213 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 10/211 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N + ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P L LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + Q +A+++GAEG G+R T+ET Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCD 212 >gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] Length = 248 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 10/237 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + Q + G H V A+ + ++L + L+ D + + + Sbjct: 22 YRYQSLEYIVEGEHLVLEAIK--MNVVKEVLVKEGTTLHLNEDYHAVSN--IYLLKENLF 77 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D+I E Q + ++N L++LD V DP N+G +LRSAVAF DG Sbjct: 78 DQIASTE-TPQPIMAVCEMKTM----NIKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +S GA+ +P + NL +A+ + G + G S + +PL Sbjct: 133 VILGDGCVDLYNEKVIRSTQGAIFKLPILN-QNLEEAVTSLKEQGVRIYGTSLQNGRPLN 191 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+A ILG EG G+ + + M I++LNVS A ++ +Y + Sbjct: 192 EIEETMKMAFILGNEGSGVSKELLSLTDGNIFIEMSENIESLNVSIAGSIIMYRFRQ 248 >gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268] gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268] Length = 260 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 11/254 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+++ +K++ + G L+ P+ + QL ++ L Sbjct: 13 KEIRELTKKAKKRWEKGMFVAEGERL---LLDLPASSLLQLYVQEDYKGALPRGIE-KED 68 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + ++ I E L L P L ++L+++ DP N+G + Sbjct: 69 SRICILSKKAMESISTTEHGQGILGLLRFPKKEK-----PKGDLFLILENIQDPGNLGTL 123 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+A A + I ++ S + +S G+L +P+ +L + + S G Q Sbjct: 124 FRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEEDLFFLCESLKSAGVQVF 183 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L D KK Q A + G EG GL + + AT + M G I++LNV+ +A+ Sbjct: 184 ALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLLIPMEGKIESLNVATSAS 243 Query: 271 VALYI--TQNHFAK 282 + LY Q + K Sbjct: 244 IVLYEAVRQRRYIK 257 >gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus castenholzii DSM 13941] Length = 248 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 13/242 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDANLPH--PFPVKTVPPQTIDKI 104 LYG + V AL R +LL + A L L PV+ + + +D+ Sbjct: 3 DLLYGRNAVREALRARRRAFQRLLVSAGAQETGALGEIVRLAGEIGVPVERIDRRELDRR 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +A HQG+ALE LD LL++LDH+ DP N+G +LR+A Sbjct: 63 L-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPALLLMLDHIQDPQNVGTLLRTAEVV 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS- 216 G+I R + + + +++GA+EH+ + +SNL ++++ G +G+ D Sbjct: 122 GVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVSNLAATIERVQHAGVWVVGVEDDER 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ + + L+LGAEG GL T+E + L M G I +LNV+ A ++ LY Sbjct: 182 ARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLVRLPMRGRIASLNVAVAGSIVLYHA 241 Query: 277 QN 278 Sbjct: 242 WR 243 >gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] Length = 264 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 99/259 (38%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81 ++++ K++ S Q+ ++ + + G+ ++ AA+ + + ++ Sbjct: 6 SKDNKTIKRIISLRQR-KNRQKNGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKNILD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + P DK V QG+ + L + LD V Sbjct: 65 LLDLDTVQSVPKYIAQDPVFDK-VDNTVNGQGVVAIVSKPTYDIESISIVDGLYITLDGV 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+AVA GI K + +S AL IP LT Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLTLLHDM 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + P + L+LG EG G+ P+ T+ + M G ++ Sbjct: 184 VTESNMTSYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS AAA+ +Y Q Sbjct: 244 SLNVSVAAALCMYKVQEQL 262 >gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 277 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 16/271 (5%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I ++K +RR + + R + G + AL P + + Sbjct: 3 EITNVKSPRVKAVRR-------LTKRAFRDRDRA----FLAEGPQAIREALRTPGVTV-E 50 Query: 71 LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT A AR PV + + ++ + QGL + P +A Sbjct: 51 LYATTEAEARHPDIVAAARDAGVPVHRTSGEVMAELT-QTVTPQGLVAVCRFVHVPLEEA 109 Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 VR ++L+ VL HV DP N G +LR+A A D ++ T + ++++G+L H+ Sbjct: 110 VRPGARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHL 169 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + + +++ G + + + + L++ + A + G E GL P+ E Sbjct: 170 PVSINARFPETVRQAREAGLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLEL 229 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + + G ++LN++ AAAV LY + Sbjct: 230 ADEVVRVPIYGRAESLNLATAAAVCLYASAR 260 >gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] Length = 589 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49 + + + + +K+ R+ +R++ + +S+ +K+ + E Sbjct: 255 VEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGE 314 Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDAN---------LPHPFPVKTV 96 +YGV V AAL+ R+ + L + R D +K Sbjct: 315 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKET 374 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++ +V HQGL L+ +PL L P L + LD V DP N+GA Sbjct: 375 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGA 433 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA F G++ + S SAV++K+++G+LE + N+ L+ G++ Sbjct: 434 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 493 Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259 +G S K L + + L+LG EG GLRP + + T + + MP Sbjct: 494 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESD 553 Query: 260 ------------IKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 554 DAEGEGFRSFLAVESLNVSVAAGLFLH 580 >gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] Length = 229 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + T+ A+ RL P V V + ++ Sbjct: 7 RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRL----RKPEEAIV--VTDDVLKEL 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + +VL+ V DP N+G ++R+A A + D + Sbjct: 60 TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R+ + + + G I + S+ + Sbjct: 117 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 176 PKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226 >gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1] Length = 305 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 10/250 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPV--K 94 ++S P + +G V + N + +LL N LD +L V + Sbjct: 46 RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105 Query: 95 TVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148 V P+ +DK+ E HQG+A L P L A+ L++VLDHV DPHN+G Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA A + ++R S + K+++GA +P I + N+ L ++ + GF Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 T+GL + L ++ ++AL++GAEG+GL E+ + + + G + +LN S A Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284 Query: 269 AAVALYITQN 278 AA ++ Sbjct: 285 AAFGMFEWSR 294 >gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] Length = 248 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVP-PQTIDKIV-- 105 +YG + V L I ++ N +L K V ++K+ Sbjct: 9 IVYGRNAVLELLQQKPESIEKIYFQFNTSHPKLKEIVITARRL--KLVSGKARLEKLSLI 66 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + +L+ V LL+VL ++DPHNIGAI+R+A A + D Sbjct: 67 AGTTKHQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAVAAD 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + +AV+ K+++GAL H+ ++ +L AL+ +H Q + +++ Sbjct: 127 AVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAELNY 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A++LG EG G+ P+ + + + M G +++LNVS A V LY Sbjct: 187 TDADMKKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAMRQR 246 >gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] Length = 251 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 114/250 (45%), Gaps = 12/250 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q + +++ + + G H V AL+ ++ + +++ +++ D+ Sbjct: 6 SNKRIKDIQKLKE-NKNIKKYGRYLIEGKHLVEEALD--AKVVEEIIVSESFEEYNIVDS 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + I QG+ ++ LD + N +++LD + DP Sbjct: 63 FEGDLIK---VTDSVLKSISDT-ITSQGIIA-VCRIVKKELD-INNYSKVLILDKIQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A AF+ D II K + + +S G+ HI +L + + +MH Sbjct: 117 NLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNIDLVELIDEMHE- 175 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 F S + K +EQ K+A++ G EG G+ + ++ + MPG ++LN Sbjct: 176 -FNIFATSLKADKYIEQLDNITGKVAVVFGNEGAGVSEEILSKVNNLLKISMPGRAESLN 234 Query: 265 VSNAAAVALY 274 VS AA + ++ Sbjct: 235 VSIAAGIVMH 244 >gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] Length = 271 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 28/260 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----------------------ANL 87 +++G H VSA ++ +L + + D NL Sbjct: 12 WIWGRHLVSATIHAKYWIPLELHYDSHRFSPHDPLGDPIVGDFPLGDSIEEAHSTSLKNL 71 Query: 88 PHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVN 142 ++ V + +++ E HQGLA + + +QL L++LD + Sbjct: 72 CEAVGIQLVASTADQLSRLIRAED-HQGLAARMPEFPYADFEGLFQAQLPALLVILDGIQ 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI+R A A GI+ ++ ++ A+S++GA+ +P R+ L A+ ++ Sbjct: 131 DSFNLGAIIRCAEALGAGGIVLPEKGQSGVNSQAARSSAGAVNFLPIYRVPALDRAIDQL 190 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S G + + + S++ L + + LI+G EGKG+ + M G + Sbjct: 191 KSRGMKILAATEKSEQSLWNVVIPAPLCLIIGNEGKGVSSALLSACDIQVRIPMAGQTSS 250 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + AA + L Q K Sbjct: 251 LNAAVAAGILLAEIQRQSLK 270 >gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis MSMB43] Length = 262 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK+++S + + L G+H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A +P L A R + +VL Sbjct: 61 HAEAREIVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVA-RPAPALPA-RVADTSVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDIDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] Length = 255 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 106/231 (45%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + ++ + R+ D V V P+ + ++ Sbjct: 33 RTDSYLIEGWHLFEEA-KKAQASFLHIFVVEDCVDRVATDDK------VIVVTPEVLKEL 85 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E P L ++ + ++L+ V DP N+G ++R+A A DG++ Sbjct: 86 TDS-PTPQGIVAEVK-QEKPDLPSIGKGK-YLLLEDVQDPGNLGTMIRTADAAGFDGVLL 142 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ HIP R +++ + M + + + SD +Q Sbjct: 143 SEKSADVFNQKTLRSMQGSHYHIPVWR-TDVYAFCRTMKTKEMPILATTLSDQSIDYKQV 201 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG+G+ PK E ++ + H+ MPG ++LNV+ AA + ++ Sbjct: 202 GTLTDFILVMGNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGILIF 252 >gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] Length = 264 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81 ++++ K++ S Q+ ++ + + G+ ++ AA+ + + ++ Sbjct: 6 SKDNKTIKRIISLGQR-KNRQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKHVLD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + P DK V QG+ + + L + LD V Sbjct: 65 LLDLDTVQFVPKFIAQDPIFDK-VDNTVNGQGVVAIVSKPKYDMESIHIDDGLYITLDGV 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+AVA GI K + +S AL IP L+ Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSLLHDM 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + T + + P + L+LG EG G+ P+ T+ + M G ++ Sbjct: 184 VTESNMTTYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS AAA+ +Y Q Sbjct: 244 SLNVSVAAALCMYKVQEQL 262 >gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334] Length = 253 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K K H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ + D L + T +++ + + QG+ P Sbjct: 42 LASGQTP-YDIYATE----KYVEDRALKPFYEKITQISESVSEHLSDTQTPQGIFA-VMP 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L + Q L+ LD + DP N+G ++R+A A ++ + + + ++ Sbjct: 96 RRAEQLPEPLSGQFLL-LDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239 G+ H+ + L ++ +H G G + K K +++ ALI+G EG G Sbjct: 155 QGSQFHVRIVSAK-LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + + ++ + G ++LNV+ AAAV ++ Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMF 248 >gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 273 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 10/229 (4%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 A I L+ ++ + PV T + ++ G L Sbjct: 47 AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L +++ +++L++V +P N+GAI RSA A + D I+ +K S + Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166 Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALIL 233 + G + IP+ + + D + ++ G++ + ++ D ++ E DK+A+IL Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMYRLKELGYKNVAMALTDRSVSIDDEALMSEDKLAIIL 226 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG GL +T + + M + +LNV+ A+AVA + AK Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271 >gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 260 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 99/258 (38%), Gaps = 8/258 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ + +KS + + G+ +I ++ +++ Sbjct: 6 SNKKIKELLALVKKSSVRKKQNAYIVEGIRMFKEL---EPEEILEVFVSESFENENKGLL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVN 142 +P +TV + D I QG+ ++ + ++LD + Sbjct: 63 KNIYP-EYETVSDRIFDSISDT-KTPQGVLAVAKRKEYTIDSILKEAGRPFSFLILDSLQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A II + + + +S G++ +P+I + +L + K+ Sbjct: 121 DPGNLGTLVRAAEGAGITCIIMNENTVDIYNPKVIRSTMGSIFRVPFIYVKDLKKVIDKL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + S + ++ IA ++G E G+ + + M G +++ Sbjct: 181 QSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVES 240 Query: 263 LNVSNAAAVALYITQNHF 280 LN + A ++ +Y Sbjct: 241 LNAAVAGSILMYEAARQR 258 >gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 244 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 9/233 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E L++ G ++V AL + I + LA+ ++ Sbjct: 15 EKLYVCGRNSVEDALK-VNLPIETIYVNSFQLAQKLKQITKAK---IEMKDNSFFANY-- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+ L+ ++ N + ++VLDH+ DPHN+GAI+R+A +I Sbjct: 69 RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 128 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 +K S + ++ + K +SG ++ I++++++ L K+ W + + D + + + Q Sbjct: 129 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 188 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 189 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYEL 241 >gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 294 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 7/212 (3%) Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 L +++ + H PV + + KI G + L P L +N Sbjct: 79 LQSRDLTQKSLVYREDEHVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKN 138 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ + +L++V +P N+GAI RSA A D ++ T + ++ + G + IP+ Sbjct: 139 ARRVAILENVVNPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTY 198 Query: 192 IS----NLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244 A+ +H G++T ++ D ++ E + +K+A++LG EG GL T Sbjct: 199 FDKNACWPDGAMDVLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHT 258 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 259 IADCDYTVKIPMTHGVDSLNVAAASAVAFWQL 290 >gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] Length = 246 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1] gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3] gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1] gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1] gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1] gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3] gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1] gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1] gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX4000] gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2141] gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0031] gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0312] gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0645] gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1302] gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309B] gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309A] gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62] gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467] Length = 258 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] Length = 246 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W] gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II] Length = 253 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K K H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ + D L + T +++ + + QG+ P Sbjct: 42 LASGQTP-YDIYATE----KYVEDRALKPFYDKITQISESVSEHLSDTQTPQGIFA-VMP 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L + Q L+ LD + DP N+G ++R+A A ++ + + + ++ Sbjct: 96 RRAEQLPEPLSGQFLL-LDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239 G+ H+ + L ++ +H G G + K K +++ ALI+G EG G Sbjct: 155 QGSQFHVRIVSAK-LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + + ++ + G ++LNV+ AAAV ++ Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMF 248 >gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1342] Length = 258 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 276 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 11/250 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLD--WDANLPHPF 91 ++ + + G ++V+ LN +R + L T++A R D L Sbjct: 19 RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150 V V + I + GL + L P AV + ++LL V VN+P N G + Sbjct: 79 RVALVTDRAIKALSDTVTPP-GLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTV 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A A D I + + +S++G+L H+P +R + ++++ + G Q + Sbjct: 138 IRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQIL 197 Query: 211 GLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 ++D + L++ + A + G E GL P A + + G ++LN++ A Sbjct: 198 ATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATA 257 Query: 269 AAVALYITQN 278 AA+ LY + Sbjct: 258 AAICLYASAR 267 >gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] Length = 246 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 40 VQAGV-TIEKIFALESYRDQL---VAFPQTI---WVSEEILRDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDLHQGK--FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ L +++ + + S K + + AL++G EG+G Sbjct: 150 QGSHFHLPIYRLP-LASFVEEAKKSYLPILATTLSRESKDYRELSPLENFALVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 243 >gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] Length = 269 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 9/262 (3%) Query: 19 HYAKLRRNHRDYKKMQSF-NQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKN 76 H + N D +++++ N + + ++ F+ G T+SA L++ LL N Sbjct: 2 HLNIITINKTDDPRLKAYHNIREKDLVGRQHQFIAEGKVTLSALLHSKDFSAISLLIVAN 61 Query: 77 ALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131 L+ L P P+ VP + +D I G VH+G+ +T P L L + Sbjct: 62 RLSGLLPLLEKTQPLCPIYCVPQKVMDNITGFH-VHRGVLGIGKRKTLPSLQSFLQHLPE 120 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++VL +++ N+G+I R+A AF+ +GII K + ++GA +PY + Sbjct: 121 KALILVLCGISNHDNMGSIFRNAAAFASNGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQ 180 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +++ D + + F LS + L+Q K ++ALI G EG GL + + Sbjct: 181 NADINDIIAALKDKNFHLYALSPSASHTLKQANKTKRMALIFGTEGDGLPTHILQQS-KT 239 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M +LNV+ A+ +AL Sbjct: 240 LRIPMTNGFDSLNVATASGIAL 261 >gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 270 Score = 201 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 18/275 (6%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 SE + S K+ KLR+ HR S+ + + G H + AL + Sbjct: 3 SELLTSPKNPWIRKLRQLHR-----------SKGRREQGAFLVEGSHLIEEALRVGW-PL 50 Query: 69 FQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTL 126 L T + +R A+LP + V + + + E+ +A+ + + SP L Sbjct: 51 QALCYTPDWASRHPHLLADLPKGLRRQPVSSEVMAALCTTESPEGAVAVAVSWQISSPPL 110 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +R L +V++ + DP N+G+++R A DG+ + E+ + ++++G Sbjct: 111 SKLR---LGLVVETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAGQWFR 167 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P + +L +Q G Q + + + + +LG EG GLR T Sbjct: 168 RPPQVVPDLAAWIQSCRCHGIQVLAATLSPTANCYWDQDLTRPTLFLLGNEGAGLREATI 227 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + M +++LNV+ + LY Sbjct: 228 QQADAQVRIPMAEGVESLNVAMTGGLLLYEALRQR 262 >gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 353 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 28/259 (10%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 L+G+ AL R + +LL A L PV Q +D Sbjct: 50 ELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + + VHQG+ +E +PL + QL +VLD + DP N GA+LRSA Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHF 168 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214 D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228 Query: 215 ------DSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261 S+ P+ + + + L+LG EG GL + Q + + + +P ++ Sbjct: 229 SAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS AA + L+ N Sbjct: 289 SLNVSVAAGILLHSICNQR 307 >gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 274 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 11/257 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARLDWDAN 86 K + ++ Q E G V AL + + ++ AT A + D Sbjct: 16 KHARRLATRAFRAEQRE-FLAEGPQAVREALAHGGADHRGTVIEVFATSEATDQHDDLVT 74 Query: 87 LPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVND 143 V V P +D + A QG+ A + P + R+ L+V + D Sbjct: 75 AARRDEVVWHVVAPDVLDALTDTVA-PQGVVARCAMVDRPLKALLDRSPTFLVVCADIRD 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N GA++R A A DG++ T + ++ G+L H+P + ++ L + Sbjct: 134 PGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLFHLPLVIDRDVEGTLAALQ 193 Query: 204 SWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 S G Q + L A ++G E GL T+ A + + + G + Sbjct: 194 SAGLQVLAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRAE 253 Query: 262 ALNVSNAAAVALYITQN 278 +LN++ AAAV LY T Sbjct: 254 SLNLATAAAVCLYTTAR 270 >gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862] Length = 256 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 17/271 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I S+++S + ++K+Q+ +K R S+ L G H V A+ + K+ Sbjct: 2 ETITSVQNSRV-------KSWQKLQT--KKGRQASK--TYLLDGWHLVQEAIQHEG-KLH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT LA + LP PV + K+ QG+ E + + Sbjct: 50 AIMATPEQLA--EHQEALPLGVPVFEITTDIAKKLSDL-VTPQGVFAEVSLPTATREPRF 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + LD + DP NIG ++R+A A G++ S ++ G+ H+ Sbjct: 107 IHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALRAMQGSQFHMTL 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L D G D L + ALI+G EG+G+ + Sbjct: 167 -TTGDLQDWTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGMAADLAKMT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T ++ + G ++LNV+ AA +A++ + Sbjct: 226 TKNLYIPLTGDAESLNVAVAAGIAMFALKAR 256 >gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] Length = 246 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D N + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADL--NQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 261 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 11/262 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALA 79 +++ K++++ Q+ R F+ G+ V+ A+ + I QL+ ++ A Sbjct: 4 SKHNPAIKQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLLRSQFA 61 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVL 138 + + P+ V + + K+ QGLA + D + L + L Sbjct: 62 QDLVEQQRQQAIPILEVSGEVFASLSSKDG-PQGLAAVVRQQWASLADVRPDQGLCWIAL 120 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + ++DP N+G ILR+ A G+I + +++ G L ++ + + Sbjct: 121 NAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFSQRLVKAT-WAEF 179 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 Q GF +G + + + L++G+E +GL + Q ++ + M G Sbjct: 180 SQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRG 239 Query: 259 IIKALNVSNAAAVALYI--TQN 278 +LN++ A V LY Q Sbjct: 240 QADSLNLAVATGVLLYEILAQR 261 >gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] Length = 247 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + T+ A+ RL V + ++ Sbjct: 25 RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDILKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + +VL+ V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R+ + + + G I + S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 194 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] Length = 229 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + T+ A+ RL V + ++ Sbjct: 7 RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDVLKEL 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + +VL+ V DP N+G ++R+A A + D + Sbjct: 60 TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 116 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +++ + + +S G+ H+P R+ + + + G I + S+ + Sbjct: 117 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 176 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226 >gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 253 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K K H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ +D A P + + + + E QG+ P Sbjct: 42 LASGQTP-YDIYATE---KYVDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFA-VMP 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L + + Q L+ LD + DP N+G ++R+A A +I + + + ++ Sbjct: 96 RQAGQLPDLLSGQFLL-LDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + L ++ + G G D K + + L++G EG G Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248 >gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 276 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG+GL + E A + M +LNV+ A+ +AL + F+K Sbjct: 231 GTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL----SRFSK 274 >gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] Length = 234 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 5/233 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGK 107 L G H + A+ + Q+ AT + P +TV + + Sbjct: 4 FLLEGTHLLQEAIATNW-PLLQVCATPAWQNQHPQLWQQAIQAAPEQTVSDDLLAYLC-T 61 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 G+ A P ++ LL+ ++ + DP N+G I+R+A A DG+ T Sbjct: 62 TVNPDGVVAIAA--RQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTAD 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + ++++G +P ++L L+ G+Q + + L Q Sbjct: 120 GVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTR 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+LG EG GL P A S + +++LNV+ AAA+ LY + Sbjct: 180 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232 >gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] Length = 222 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + P Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET 247 + KIALI+G EGKG+ + Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKNK 219 >gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0012] Length = 258 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWRTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEKSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 272 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 7/242 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + ALN + I L+ K+ PV T + + Sbjct: 28 YEPEPGIFIAESPKVIERALNAGYQPISFLVEHKDLEGEAQEILKQYPDVPVYTAEYELL 87 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L L + RN+ + VL++V +P NIGAI RSA A D Sbjct: 88 VKLTGFALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAIFRSAAALHMDA 147 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS--D 215 ++ T S A+ + G + IP+ D +Q + + GF+T ++ D Sbjct: 148 VLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLGFKTAAMALRDD 207 Query: 216 SKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S ++ +++ +K+A+ILG EG GL +T + M + +LNV+ A+AVA + Sbjct: 208 SVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFW 267 Query: 275 IT 276 Sbjct: 268 EL 269 >gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] Length = 242 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 19/249 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N++ K + K + + + G H V A + + D Sbjct: 6 NNKTIKDLVKLKNK-KTRDEKGLFLVDGFHMVEEAKKAGLCDLV-----------ISTDE 53 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +L V V ++K+ Q + + +++ +++LD V DP Sbjct: 54 SLEGQDKVLVVSDSVMEKL-SYTKTPQPIMAVCHKKD----NILKHYDRVLILDGVQDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILRSA+AF I+ + + +S GA+ H+ +R +L + ++ Sbjct: 109 NLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR-DDLHHVIPELQKL 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + I S + ++ DK+A ++G EG G+R +T + + ++ + +++LNV Sbjct: 168 GVRVIATSLHNASSIDDIKSTDKMAFVMGNEGNGVRDETIAMSDASLYIPID-TMESLNV 226 Query: 266 SNAAAVALY 274 AA + +Y Sbjct: 227 GVAAGIVMY 235 >gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 289 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R LL T+ LA L D Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 79 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P P + ++VG LA + + S+ + VL+ VND N+GA Sbjct: 80 PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 139 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D +I + + + G +PY R ++ L+ + GF+ Sbjct: 140 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGFRL 199 Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ L + + + D++A+++GAEG GL P + + M +LNV Sbjct: 200 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 259 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 260 ATAAALAFYERSR 272 >gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 268 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 8/250 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + L K+ P Sbjct: 23 LTEAQLRNRLEPEKGVFIAESPKVIRVALDAGYEPLALLCERKHLAGDAADILARCPDIP 82 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + ++ G L P + + ++ ++V+ V D NIGAI R Sbjct: 83 VYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEEVCGGARRIVVIHGVTDTTNIGAIFR 142 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIG 211 SA A DG++ T + + + G++ IP+ DA L + GF+T Sbjct: 143 SAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWT----WADAPLAALRRLGFRTAA 198 Query: 212 LS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ SD PL+ ++AL++G EG GL T A + M + +LNV+ A Sbjct: 199 LALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAEADYTVRIPMAHGVDSLNVAAA 258 Query: 269 AAVALYITQN 278 +AVA + + Sbjct: 259 SAVAFWELRR 268 >gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG+GL + E A + M +LNV+ A+ +AL + F+K Sbjct: 231 GTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274 >gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] Length = 264 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81 ++++ K + + Q+ ++ + + G+ ++ AA+ + + ++ Sbjct: 6 SKDNKTIKHIIALGQR-KNRQKSGEYIVEGIRSIRDIAAMGAVKTVVIRESKAQDKNVLD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V DKI QG+ + L + LD V Sbjct: 65 LLTLDSAQSAHTYIVQDPVFDKI-DNTVNGQGVVAIVSKPKHNIESVSIEDGLYITLDGV 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+AVA GI K + +S AL IP L+ Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSMLHDI 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + T + ++ +P + L+LG EG G+ P+ T+ + M G ++ Sbjct: 184 VAESNMTTYVTALENSEPYHSVNYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS AAA+ +Y Q Sbjct: 244 SLNVSVAAALCMYKVQEQL 262 >gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R LL T+ LA L D Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 79 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P P + ++VG LA + + S+ + VL+ VND N+GA Sbjct: 80 PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 139 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D +I + + + G +PY R ++ L+ + GF+ Sbjct: 140 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRL 199 Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ L + + + D++A+++GAEG GL P + + M +LNV Sbjct: 200 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 259 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 260 ATAAALAFYERSR 272 >gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 236 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 9/239 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGK 107 + +YG + V A+ + R I ++ ++ + L + +D++ G Sbjct: 1 MVIYGRNAVEEAVRSG-RNIEKVYLLHGKFFEPEFLSLLQERGVRFQWAKRPQLDRLAGT 59 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ +P+ TL + V + L+ + +P N+GAI RS F G+ Sbjct: 60 GK-HQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIARSVELFGGVGL 118 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S + V K+++GAL H+ +R+ L + L G L + + + Sbjct: 119 LLPQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGNVYALETGGRDIRDS 178 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++K +A ILG+EGKG+ + E A + G + +LNVS AA +A + A Sbjct: 179 QLKR-PLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRRGA 236 >gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] Length = 246 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + + K K R++ + + G H A Sbjct: 1 MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +N + + V V + + QG+ E A Sbjct: 40 VQAQAEF-------RNIFVLEIFFDKVKDFSQVHVVTADILADLADS-KTPQGIVAEIAF 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ L L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 92 EKQSAPSFLKGKYLF--LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239 G+ H+P R+ D L+ + + +E+ AL+LG EG+G Sbjct: 150 QGSHFHLPVYRVK-TADFLELAKQVQLPILATTLSKDSMDYRELAPLSDFALVLGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + E A ++ H+ M G ++LNV+ AA + ++ Sbjct: 209 ISHEMAEAADNLIHISMKGRAESLNVAVAAGILIFAL 245 >gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 231 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 9/233 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E L++ G ++V AL + I + LA+ ++ Sbjct: 2 EKLYVCGRNSVEDALK-VNLPIETIYVNSFQLAQKLKQITKAK---IEMKDNSFFANY-- 55 Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+ L+ ++ N + ++VLDH+ DPHN+GAI+R+A +I Sbjct: 56 RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 115 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 +K S + ++ + K +SG ++ I++++++ L K+ W + + D + + + Q Sbjct: 116 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 176 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYEL 228 >gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 273 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 10/229 (4%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 A I L+ ++ + PV T + ++ G L Sbjct: 47 AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L +++ +++L++V +P N+GAI RSA A + D I+ +K S + Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166 Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIK--NDKIALIL 233 + G + IP+ + + D + ++ G++ + ++ ++ ++ E DK+A+IL Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTARSVSIDDEALMSEDKLAIIL 226 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG GL +T + + M + +LNV+ A+AVA + AK Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271 >gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255] Length = 265 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 113/262 (43%), Gaps = 10/262 (3%) Query: 26 NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79 N +D +K++ KS++ ++ + G V AL + I + K Sbjct: 6 NSKDNEKLKYTRALLKSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138 +L D + + + + ++V E QG+ + +++ + + +++L Sbjct: 66 KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+G I+R+A + D II K + + +S G++ + I S + Sbjct: 124 DRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNIIDASQ-DET 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + S F + +++ ++ K+AL++G E G+ + + + + + G Sbjct: 183 VDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242 Query: 259 IIKALNVSNAAAVALYITQNHF 280 ++LN + ++A+ +Y + + Sbjct: 243 KAESLNAAISSAILMYEIKKYL 264 >gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 228 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 63 NPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N +R +++ T A +L + L + + ID ++ + HQG+ + + Sbjct: 2 NKNRVKYEVYFTSEAERKLRSEVKLESYNIITIRKTREEIDLVLKGISNHQGICIRVEKI 61 Query: 122 LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 P L + + ++ +LD ++DP N+GAI RSA+AF DGII T S +E++ L Sbjct: 62 QPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFL 121 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+AS A++ IP+ +I N++ ++ + G+ GL +++ + +KI ILG+E Sbjct: 122 AKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGSE 181 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KG+R T + M +++LNVSNAAA+ ++ N Sbjct: 182 SKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223 >gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] Length = 264 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 14/265 (5%) Query: 20 YAKLRRNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 Y L H D K + Q +R + + + L G+H + AAL Q + AL Sbjct: 5 YRSLTSPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVP-AQCFINEAAL 63 Query: 79 ARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 R + A LP VP + K+ + + +A+ P R S Sbjct: 64 GRAEVSVLLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP------RRSGSC 117 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L+ + DP N+G ILRSA A + +K + S + ++ GA + ++L Sbjct: 118 LLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHEAADL 177 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + L + + + L + +A + G EG G+ + A + Sbjct: 178 AEVLGGFAGRK---LVTHLEGSQSLYAQDLRGDVAFVFGNEGAGVSAGLLQLADCRVRIP 234 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 MPG ++LNV+ AA + L+ Sbjct: 235 MPGHAESLNVAMAATICLFERVRQL 259 >gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 113/211 (53%), Gaps = 9/211 (4%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 T+NA LD + P I + AVHQG AL+T+ + +L+AV Sbjct: 3 VTRNAATELDDTFRKLADIEL----PGQITSRLPDGAVHQGFALKTSAPPAESLNAVLEP 58 Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 LL+VLD + DPHN+GAILRS AF +I R SP L K+A G E IP + Sbjct: 59 THGLLVVLDQITDPHNVGAILRSCAAFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQV 118 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQET 247 +++N+ D L + G IGL+ +++ L EI + L+LGAEG GLRP+ E Sbjct: 119 QVTNIADTLIALQEAGRHVIGLAGEAEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAEH 178 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +S+A + M ++LNVSNAAA+ALY Sbjct: 179 CSSLARIPMGPKAESLNVSNAAAIALYEASR 209 >gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] Length = 244 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++G + A+ I ++ K L + N VP + ++K+ Sbjct: 7 IFGTRAIIEAIQAGKE-IDKVFLQKGLHNPLLSELNTLIKKKGVQTSHVPIEKLNKLT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG + + + + N+ L ++LD ++D N GAI+R+A Sbjct: 64 QQNHQGAIAVVSAISFYDFEELVNAVVETEAAPLFILLDQLSDVRNFGAIIRTAECTGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ + V K+++GA +IP ++ ++ DA+ + G Q + + ++ L Sbjct: 124 GIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVDHIKDAIYYLQGSGVQVVAATEKTETTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G E G+ P + A L + G I +LNVS A LY Sbjct: 184 FETDFTSPTAIVMGREDSGVSPGVLKIVDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5] gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum indicum S5] Length = 228 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 8/228 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 GV++V AL S I ++ +++ A H P+K + +D G+ Q Sbjct: 5 GVNSVREALRCGSN-IEKIFLSRSLPD--IETAAREHDIPIKILNRDKMDSQFGQHN--Q 59 Query: 113 GLALETAPLL-SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 G+ + L + ++ +++ D V DP N+GAI+RSA AF D ++ T+ S Sbjct: 60 GVGAIVGAIATQDPLTFLVDASCIVLADRVQDPGNLGAIIRSAAAFGAD-VVITEHQSAP 118 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 S + K+++G + H R+ N ++K GF T+ L + + L + + KI L Sbjct: 119 ISDTVIKASAGNIYHTRVGRVVNAARYVEKAKENGFWTVALDGEGE-SLFRLKLDGKILL 177 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G EG GL+ A A + M +++LN S A A+ALY Sbjct: 178 MVGNEGSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225 >gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974] gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A V + + + QG+ Sbjct: 40 VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + + L+ V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239 G+ H+P R+++ L + + + +E+ + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243 >gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana] Length = 577 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49 + + + + +K+ R+ +R++ + +S+ +K+ + E Sbjct: 243 VEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGE 302 Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDAN---------LPHPFPVKTV 96 +YGV V AAL+ R+ + L + R D +K Sbjct: 303 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKET 362 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++ +V HQGL L+ +PL L P L + LD V DP N+GA Sbjct: 363 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGA 421 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA F G++ + S SAV++K+++G+LE + N+ L+ G++ Sbjct: 422 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 481 Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259 +G S K L + + L+LG EG GLRP + + T + + MP Sbjct: 482 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESD 541 Query: 260 ------------IKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 542 DAEGEGFRSFLAVESLNVSVAAGLFLH 568 >gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] Length = 260 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 8/259 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R + K + + G ++ L T++A+A+ Sbjct: 4 KITSRENAKIKYACRLSSSAAFRRSEGRFLAEGRKLCPEL--ARGAQLETLFYTESAMAK 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP V DK+ HQG+ TLD V+ + L+ Sbjct: 62 CPELAGLPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLDEVKAGGRYLALER 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G +LRSA AF DG+I + + + +++ GA IP I + DA+ Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEAGAMPDAIT 177 Query: 201 KMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + G + + +PL Q + +++G+EG+GL +T +S + M Sbjct: 178 QLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAACSSTVRIPMTD 237 Query: 259 IIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 238 RVESLNAGIAGSILLWHFR 256 >gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] Length = 233 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 13/238 (5%) Query: 47 ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + L++ G ++V A+ P ++ L +K+ +L +N+ V + K Sbjct: 2 KKLYMCGKNSVIDAIKAKLPIEAVYVL--SKSHADKLKEFSNIKI-----VVKDASFFKE 54 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG L +D ++ N + +++LDH++DPHN GAI+R+A A I Sbjct: 55 YNSE-NHQGYLLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHI 113 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLE 221 I K S ++ + K +SG + I++SN+ +++K+ WGF L ++ P Sbjct: 114 IIPKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYN 173 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + AL++G E KG+ ++ G ++++NVS A + L+ N Sbjct: 174 KVQYTGNCALVVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231 >gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] Length = 286 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 20/267 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDW 83 Y ++ +++ + + + AL + L+ A + L R+ Sbjct: 17 YARLTEAQLRNKLEPEKGIFIAESLKVIDRALAGGMVPLSVLMTPEWMDAAADMLERIQQ 76 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMV 137 P+ P + K+ G + L P + D + ++ + V Sbjct: 77 AGEGGADVPIYVGPADELQKLTGFKLTRGILCAMRRPKMPSAEDLLATCRNGGPARRVAV 136 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-----I 192 L+ + D N+GAI RSA A + D ++ T + + G + +P+ R Sbjct: 137 LEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVH 196 Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETAT 249 L+++H+ GF+T ++ SD L +K+AL+ G EG GL P+T T Sbjct: 197 DWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283 >gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] Length = 262 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A +P L A R + +VL Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 273 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 6/221 (2%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+ + L K+ PV T P + + G L Sbjct: 47 ALDKGCEPLALLCEHKHIAGDAAAIIARCGDLPVYTGPRPVLAALTGYTLTRGVLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PLL + R ++ ++V+ V D NIGAI RSA A D ++ T+ + + Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDK-IALILGAE 236 + G++ +P+ + L D++ + GF+T ++ D PL+ + + +A+++G E Sbjct: 167 SMGSVFLVPW---TWLDDSIASLSRLGFRTAAMALTDRSVPLDDPALATEPRLAIVMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL +T E A + + M + +LNV+ A+AVA + + Sbjct: 224 GDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264 >gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196] gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291] gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196] gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291] Length = 265 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 113/262 (43%), Gaps = 10/262 (3%) Query: 26 NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79 N +D +K++ KS++ ++ + G V AL + I + K Sbjct: 6 NSKDNEKLKYTRALLKSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138 +L D + + + + ++V E QG+ + +++ + + +++L Sbjct: 66 KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+G I+R+A + D II K + + +S G++ + I S + Sbjct: 124 DRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ-DET 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + S F + +++ ++ K+AL++G E G+ + + + + + G Sbjct: 183 VDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242 Query: 259 IIKALNVSNAAAVALYITQNHF 280 ++LN + ++A+ +Y + + Sbjct: 243 KAESLNAAISSAILMYEIKKYL 264 >gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] Length = 233 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + L++ G ++V+ A+ I + N A + +KTV Sbjct: 2 KKLYMCGKNSVTDAIK-AKLPIEAVYVMSNFHAE-----KIKEFSNIKTVVKDANFFKDY 55 Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG L +D ++ N + +++LDH+ DPHN GAILR+A A II Sbjct: 56 NSENHQGYLLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIII 115 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 K S ++ + K +SG + I++SN+ ++ K+ SWGF D + P + Sbjct: 116 PKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKV 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N+ AL++G E KG+ T ++ G ++++NVS A + L+ N+ Sbjct: 176 EYNEHCALVVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFELVNN 231 >gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] Length = 277 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 9/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R H +KK+ +R L G+H + + L + + L+ +++ + Sbjct: 6 SREHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVL-LIVSESGSQHPEI 64 Query: 84 DANLPH--PFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 L H P KT + T+ + G+ + ++L Sbjct: 65 SQLLIHIDKDPQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNSFSILL 124 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + DP N+G++LRSA A +G+ + + + S ++ GA + +L Sbjct: 125 EGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDLIQV 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + + L + + G EG G+ + ET + MPG Sbjct: 185 ARQFAGN---VVATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPMPG 241 Query: 259 IIKALNVSNAAAVALYITQNH 279 ++LNV+ AAA+ L+ Sbjct: 242 CTESLNVATAAAICLFEKVRQ 262 >gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355] Length = 246 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A++N + I A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAVSNGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L++V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFERKEIPSELSGRYLF--LENVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P RI + D ++ S + + S + Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLARSSSLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 VSKESFVLVMGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032] gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus SAFR-032] Length = 247 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 23/253 (9%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S K++H + +KK+ + ++++ + G+H V AL + R + +L Sbjct: 4 IESAKNTHI-------KQWKKLHTKKERTK----TGLFLVEGIHLVEEALKS--RAVKEL 50 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + T + +++ + + + + E A+ T P+ + Sbjct: 51 MVT----SPDKLPSHIDPDIELYELSEEAFFAMTETETPQHIAAVCTVPVFEE-----KK 101 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++LD V DP N+G ++R+A A D +I + + +SA G+ H+P ++ Sbjct: 102 YERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQGSHFHLPILK 161 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L + G G + ++ K + ALI+G EG G+ P+ + Sbjct: 162 -QSLQQTIAACKEQGIPVYGSALNNAKAYKSVTAEGPFALIVGNEGGGINPEILQMTDHN 220 Query: 252 AHLHMPGIIKALN 264 ++ M G ++LN Sbjct: 221 LYVPMYGQAESLN 233 >gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] Length = 291 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 101/261 (38%), Gaps = 12/261 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87 Y ++ +S + + AL I L ++ L L+ L Sbjct: 19 YARLTERELRSVLEPEKGLFIAESAKVIERALEAGMEPI-SFLVAEDRLESLEPILALVD 77 Query: 88 -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P P+ + + + G LA P L ++ + + + VLD + D N Sbjct: 78 AAEPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTN 137 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQK 201 +GA RSA A + D ++ + + + G + +P+ R S D + Sbjct: 138 VGAAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMAT 197 Query: 202 MHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + GF L+ D L+ I D++AL G EG+GL + E + + M G Sbjct: 198 LRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAG 257 Query: 259 IIKALNVSNAAAVALYITQNH 279 + +LNV+ A+AV + H Sbjct: 258 GVDSLNVAAASAVVFWQLCPH 278 >gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49] Length = 246 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + I A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAISSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFERKEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAACFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLLILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D L++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 DSKDSFVLVMGNEGQGISPEMTAAADVLVHISMKGQAESLNVAVAAGILIF 243 >gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 255 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 18/261 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ KK+ NQK ++ + + G H A+ +K +L T+ AL +++ D Sbjct: 8 NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIK-AGKKYQYILGTEEALDKVNEDY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHV 141 NL + + I + + Q + + +D R ++LD++ Sbjct: 66 NLELDGKNVILINKAIARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNL 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A DG++ + + + ++ G+ HI I+ +L DA+ Sbjct: 120 ADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIK-RDLADAITD 178 Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 D S K L+ K ++ALI+G E G+ + ++ + G Sbjct: 179 FQDAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKA 238 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN + AA + +Y HFA Sbjct: 239 ESLNAAVAAGIMIY----HFA 255 >gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] Length = 213 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 K+ D + L + V Q + K++ QG+ + L+ Sbjct: 11 KSRFQSFDIKSKLQKSTKIYWVSEQVL-KLLSDTETPQGITAVV---DNKELNVENKEGF 66 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++D V DP N+G I+R+A A G+I TK + +S G++ H+P I+ ++ Sbjct: 67 YVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDND 126 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + GF + S ++ K K + +G EG G+ + A + Sbjct: 127 LNK-VNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEIYNMADIKVKI 185 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 MPG ++LNVS AA V ++ Sbjct: 186 PMPGGAESLNVSVAAGVMMFEVIRQ 210 >gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 273 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+ + L K+ PV T P + + G L Sbjct: 47 ALDKGCEPLALLCEHKHIAGDAAAIIARCGDLPVYTGPRPVLAALTGYTLTRGVLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PLL + R ++ ++V+ V D NIGAI RSA A D ++ T+ + + Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236 + G++ +P+ + L D++ + GF+T ++ D PL+ ++A+++G E Sbjct: 167 SMGSVFLVPW---TWLDDSIASLSRLGFRTAAMALTDRSVPLDDPALAAEPRLAIVMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL +T E A + + M + +LNV+ A+AVA + + Sbjct: 224 GDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264 >gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] Length = 432 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R LL T+ LA L D Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 222 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P P + ++VG LA + + S+ + VL+ VND N+GA Sbjct: 223 PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 282 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D +I + + + G +PY R ++ L+ + GF+ Sbjct: 283 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRL 342 Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ L + + + D++A+++GAEG GL P + + M +LNV Sbjct: 343 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 402 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 403 ATAAALAFYERSR 415 >gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] Length = 270 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 12/256 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82 +++++K ++ KS + L G + A + ++ T + Sbjct: 9 DNKNFKYLKKLYNKS-FRKKEGKFILEGYRLIMEA--CGKARFDRIFMTPYFAKTDEGEE 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE--TAPLLSPTLDAVRNSQLLMVLDH 140 PV V + + + E QG+A + L RN ++++LD Sbjct: 66 IIRKFKDHIPVHFVTGKLLYNVADTE-NPQGIAAITYVPRSGANILFHNRNRGIILILDR 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+AVA +GII K + + +++ GA+ IP + + LQ Sbjct: 125 IQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPILTGVSFKR-LQ 183 Query: 201 KMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 K+ ++ I ++ K + + + L++G E +G+R + A + + G Sbjct: 184 KIRDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSLADIKIKIPLMG 243 Query: 259 IIKALNVSNAAAVALY 274 I +LN + + A+ LY Sbjct: 244 NIDSLNAAVSTAIVLY 259 >gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + + AL+ I L+ K + Sbjct: 18 FARLTETQLRNRLEPEMGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQARGIITRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P L + ++ + VL+ + D N+GA Sbjct: 78 DIPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHS 204 I RSA A D ++ T + + G + +P+ RI + ++ + Sbjct: 138 IFRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRK 197 Query: 205 WGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T+ ++ + K Q + +K+A++LG+EG GL P T A + M + Sbjct: 198 LGFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVD 257 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ A+AVA + + Sbjct: 258 SLNVAAASAVAFWQLR 273 >gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 270 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 7/263 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALA 79 L R + K ++ + R + + GV V ALN+ + T+ Sbjct: 2 LSRQNSRIKYLRRLGSR-RFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITETRRG 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQLLMV 137 + P+ V ++ G QG + L A LL++ Sbjct: 61 EALLEKASFQGVPLVEVDESLFGELAGTT-TPQGALAVVKKGKVSLEDLQAGGEPALLVI 119 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D V DP N+G I+RSA A G+I K + +A ++ GA+ ++P ++ + Sbjct: 120 VDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVE 179 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A+ + G + + K + AL+LG+E G + MP Sbjct: 180 AMTYLKQLGIKAVAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMP 239 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G ++LNV+ ++AV L+ Sbjct: 240 GRAESLNVAVSSAVLLFEAVRQR 262 >gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 7/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + P + AL + L+ K+ PV T +T+ Sbjct: 30 NEPNPGLFIAESPKVIERALKAGYEPLSFLVEHKDLDGEAGDILARYPEIPVYTAEYETL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L L + +NS+ + +L+++ +P NIGAI RSA A D Sbjct: 90 VKMTGYALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGAIFRSAAALHMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS-DS 216 ++ T S A+ + G + IP+ D ++ + + GF+T+ ++ D Sbjct: 150 VLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNLGFKTVAMALRDD 209 Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + +K+A++LG EG GL +T + M + +LNV+ A+AVA + Sbjct: 210 SYSIDDPELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFW 269 Query: 275 ITQN 278 Sbjct: 270 ELGR 273 >gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12] gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 269 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + L K+ P Sbjct: 20 LTEAQLRNRLEPEKGLFIAESPKVIKVALDAGYEPLAILCEQKHITGDAANIIERCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R ++ ++++D V D NIGAI R Sbjct: 80 VYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ + + + + GA+ +P+ + L L + WGF+T+ + Sbjct: 140 SAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPW---TWLDGPLSDLARWGFRTVAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D+ ++ + K+A+++G EG GL + A + + M + +LNV+ A+ Sbjct: 197 ALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51] gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + + AL+ I L+ K + Sbjct: 18 FARLTETQLRNRLEPEIGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQAHGIITRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P L +A + + VL+ + D N+GA Sbjct: 78 DIPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHS 204 I RSA A D ++ T + + G + +P+ RI + ++ + Sbjct: 138 IFRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRK 197 Query: 205 WGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T+ ++ D+ ++ Q + +K+A++LG+EG GL P T A + M + Sbjct: 198 LGFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVD 257 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ A+AVA + + Sbjct: 258 SLNVAAASAVAFWQLR 273 >gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] Length = 290 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 7/254 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +RH + + ALN I L+ + ++ Sbjct: 33 YARFTEVQLLNRHEPEKGIFIAESPKVIERALNAGCVPISFLVEQRQVESQEQERLFRRG 92 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T P + ++ G L P + ++ + VL++V +P N+GA Sbjct: 93 NVPVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGA 152 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205 I RSA A + DG++ T+ S + + G + IP+ + S + + Sbjct: 153 IFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGIAHLREL 212 Query: 206 GFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GFQT+ ++ + + ++A++LG EG GL +T + M + + Sbjct: 213 GFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMSHGVDS 272 Query: 263 LNVSNAAAVALYIT 276 LNV+ A++VA + Sbjct: 273 LNVAAASSVAFWQL 286 >gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] Length = 233 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 11/237 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + L++ G ++V A+ I + +K+ +L +N+ V + K Sbjct: 2 KKLYMCGKNSVIDAIK-AKLPIEAVYVLSKSHADKLKEFSNIKI-----VVKDASFFKEY 55 Query: 106 GKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 E HQG L +D ++ N + +++LDH++DPHN GAI+R+A A II Sbjct: 56 NSE-NHQGYLLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHII 114 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQ 222 K S ++ + K +SG + I++SN+ +++K+ WGF L ++ P + Sbjct: 115 IPKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNK 174 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AL++G E KG+ ++ G ++++NVS A + L+ N Sbjct: 175 VQYAGNCALVVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231 >gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 278 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I LL L L D Sbjct: 27 DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLTSRFDPI-ALLGVDRRLEELTDDLA-H 84 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D + +++ + VL+ VND N+G Sbjct: 85 VDVPFYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHTRTVAVLEGVNDHENLG 144 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L + GFQ Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204 Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + L + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 205 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 265 AAAMAFYERVR 275 >gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 261 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 112/271 (41%), Gaps = 18/271 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + SL++S ++R+ H +S+ + + + G H + A + + Sbjct: 2 LTSLQNSLVKQIRQLH-----------QSKGRQEQQLFLVEGTHLLEEACKRNY-PLITV 49 Query: 72 LATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T + + L ++ V + I + + +A+ + + Sbjct: 50 CHTFEWQEKHKFLYELVSQKAQRIELVSTKIIQSLATTVSPDGVVAIA----PQSQTNFL 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L +VLD + DP N+G I+R+AVA + DG+ ++ + ++++G ++ Sbjct: 106 KITTLGIVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHK 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL + + K+ S G Q + +S + ++LG EG G+ + A Sbjct: 166 AISENLKNEILKLQSQGLQVLATVPNSNINYWEIDLRKPTIIVLGNEGSGISKDLIDLAD 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++LNV+ +AA+ LY Q Sbjct: 226 YSVKIPLSNGVESLNVAVSAAIILYEIQRQR 256 >gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] Length = 577 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49 + + + + +K+ R+ +R++ + +S+ +K+ + E Sbjct: 243 IEEEPDNTRWSEIKNRFNRYDVRDQGHDNAAYRNWNRQESWGRKTWQEATESSVPRLEGE 302 Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHPFPVKTV 96 +YGV V AAL+ R+ + L + + +K Sbjct: 303 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFEKVLKISEKLGLNLKET 362 Query: 97 PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 ++ +V HQGL L+ +PL L P S L + LD V DP N+GA Sbjct: 363 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKSSLWVALDEVTDPQNLGA 421 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA F G++ + S SAV++K+++G+LE + N+ L+ G++ Sbjct: 422 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 481 Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259 +G S K L + + L+LG EG GLRP + + T + + MP Sbjct: 482 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTELVRISGNMPNDVSVTESD 541 Query: 260 ------------IKALNVSNAAAVALY 274 +++LNVS AA + L+ Sbjct: 542 DAEGEGFRSFLAVESLNVSVAAGLFLH 568 >gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae BGR1] gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae BGR1] Length = 260 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ ++ + L G+H +A L+ + + T ALA + Sbjct: 6 SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCV-VTDGALAHDET 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + P + V P + + GL L + + V + ++VLD V Sbjct: 65 RAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPERVTGT--VVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + D + ++ Sbjct: 123 DAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G S + ++ + +A + G EG G+ +E A + PG +++ Sbjct: 183 ---GVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQCRQ 256 >gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 161 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 80/152 (52%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 63 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGE 122 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M G + +LN S AA++ +Y Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154 >gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 175 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++ Sbjct: 12 LFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKAST 71 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA+E+IP R++NL+ + ++ G G + K I L++G+EGKG+ Sbjct: 72 GAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMS 131 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + L M G + +LN S AA++ +Y Sbjct: 132 RIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168 >gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] Length = 271 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 8/247 (3%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 ++ + + ALN + L+ K PV T Sbjct: 25 NKDHPEEGMFIAESPKVIERALNAGYTPVAVLVEKKQIEGEAASVLARCDEIPVYTAEFD 84 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + ++ G + L L +N++ + VL++V +P N+GAI RSA A + Sbjct: 85 VLAQLTGFKLTRGMLCAMRRRGLPEVEKVCQNAKKVAVLENVMNPTNVGAIFRSAAALNM 144 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHSWGFQTIGLS- 213 D ++ T S ++ + G + IP+ I + + ++++H GFQT L+ Sbjct: 145 DAVLLTGGCSNPLYRRASRVSMGTVFQIPWTFIGEKQEDWIENGIRRLHGLGFQTAALAL 204 Query: 214 SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 SD ++ + + K+A+ILG EG GL +T + M + +LNV+ A+AV Sbjct: 205 SDDSVSIDDKRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAV 264 Query: 272 ALYITQN 278 A + Sbjct: 265 AFWELGR 271 >gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 296 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 7/196 (3%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H PV + + KI G + L P LS +N++ + +L++V +P N+ Sbjct: 95 EHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNV 154 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTD-ALQKMH 203 GAI RSA A D ++ T+ + ++ + G + IP+ + D A+ +H Sbjct: 155 GAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAMDVLH 214 Query: 204 SWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G++T ++ D ++ E + +K+A++LG EG GL T + M + Sbjct: 215 KLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGV 274 Query: 261 KALNVSNAAAVALYIT 276 +LNV+ A+AVA + Sbjct: 275 DSLNVAAASAVAFWQL 290 >gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353] gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72] Length = 246 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + K+ ++ A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAVSSGA-KLIRIFAL------AEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQE 223 ++ + + +S G+ H+P R+ + D ++ S + + S + Sbjct: 134 SQLSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSRLPILVSTLSSISIDYRKV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ALI+G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 DSKESFALIMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 250 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 9/243 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 Q+ ++ Q E G+ TV L + + L + +A A L + V + Sbjct: 5 QRKKYRDQEEMFLGEGLRTVRELLLHLPGPDSLVALFLSPDAEALLPE--AEAYRGKVFS 62 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 V ++ G E+ + P SP L ++++ LD V DP N G ILR+ Sbjct: 63 VDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNAGTILRT 122 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F D +++ + +S++G+L +P+ + +LTD L+++ G+ + S Sbjct: 123 AAWFGADALLSGPGTVDLYNPKTVRSSAGSLFSLPHYSVDSLTDELERLKQNGYGVLCSS 182 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGI--IKALNVSNAAA 270 + + E ++ L++G E G+ A + + G +++LN S +AA Sbjct: 183 LEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRVESLNASVSAA 242 Query: 271 VAL 273 V L Sbjct: 243 VLL 245 >gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 246 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 253 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K K H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ +D A P + + + + E QG+ Sbjct: 42 LASRQTP-YDIYATE---KYVDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + ++LD + DP N+G ++R+A A +I + + + ++ Sbjct: 97 QAGQLPDPLSGQ--FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + L ++ + G G D K + + L++G EG G Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248 >gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] Length = 287 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 46 PENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E LF+ + AL+ + LA K LA + + P+ P + + K+ Sbjct: 43 EEGLFITESPKVIERALDGGYEPV-SFLAEKGQLAEAEEILDRMEDVPIYVAPDEILTKL 101 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G L + + ++ + +L+ V +P N+GA+ R A A D +I Sbjct: 102 TGYHLTRGLWCTMRRRTLPTIEEVCQGAKRIAILEEVVNPTNVGALFRCAAALGMDAVIL 161 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWGFQTIGLSSDSKK- 218 T S ++ + G + IP+ +S A++ + GF+T ++ Sbjct: 162 TGGCSDPLYRRASRVSMGTVFQIPWTMLSKKDGVWPEQAMKTLKEMGFKTAAMALREDSV 221 Query: 219 --PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q +K+A++LG EG GL T + M + +LNV+ A AVA + Sbjct: 222 GIDDPQLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFWQL 281 Query: 277 --QNH 279 Q Sbjct: 282 GHQRQ 286 >gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] Length = 244 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 20/251 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +++ K+Q + ++ Q + G H + AL + + QLL + + Sbjct: 12 KNWAKLQ----QKKYRDQTGKFLVEGEHLIGEALKAGA--VEQLLIEAGRTNPFEREKEA 65 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + K+ + +A+ T +P +VLD V DP N+ Sbjct: 66 I------VCGESVMRKLSANVSGAWLIAVCTQKTTAPA------GLRTVVLDGVQDPGNV 113 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+AVAF D ++ + + + +S GAL HI R + L AL ++ G Sbjct: 114 GTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALFHIAISR-TELIPALNELKELGV 172 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IG + +PL + ++ IA++LG EG+G+RP T + A + M ++LNV+ Sbjct: 173 TVIGTALQGAQPLSELPVSENIAVVLGNEGQGIRPATLDICDQRALIEMS-SFESLNVAV 231 Query: 268 AAAVALYITQN 278 AA + LY + Sbjct: 232 AAGICLYRYRR 242 >gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405] gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1] gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408] Length = 246 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + I A ++ L V V + + + Sbjct: 24 RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAEQLADFSLVIFVSSEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFERKEIPLELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 ++ + + +S G+ H+P R+ + D ++ S + + S Sbjct: 134 SQLSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSRLPILASTLSSTSIDYRNV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG+G+ P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 193 DSKESFVLVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIF 243 >gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 264 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 18/273 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+++ ++R+ HR +R + + G H + AL Sbjct: 2 ISSVQNPLIKQIRKLHR-----------TRERQEQNLSLIEGTHLLETALAVNCSPETVC 50 Query: 72 LATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 K + L + V+ V P+ + + G+ + L + Sbjct: 51 YTEKWRQRQGQLAEKLQNQAKRVEIVSPEVLASLA-TTVNPDGVIATIS---RTHLHPIP 106 Query: 131 NSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L +VL+ + DP N+G I+R+AVA GI + ++ + +S++G P Sbjct: 107 QNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSP 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S+L+ ++K + G + I + K + ++LG EG GL P+ A Sbjct: 167 LVVESDLSALVKKYQAQGVKAIATLPTATKNHWEIDFTRPTLILLGNEGAGLSPQLATLA 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +++LNV+ A AV LY + + Sbjct: 227 DETVKIPLFGGVESLNVAIATAVILYEARRQLS 259 >gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 317 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 28/259 (10%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD----WDANLPHPFPVKTVP 97 + L+GV S AL+ R +F+L + RL PV V Sbjct: 49 ERTRGSEILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTSEFVLQAAARGVPVLHVG 108 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----------LMVLDHVNDPHN 146 + +D + G VHQG+ LE PL L+ L + L+ + DP N Sbjct: 109 RRELDTLCG-GRVHQGVCLEATPLRFKRLEEAEEPGLGDGESPNRQLLWLALEQIQDPMN 167 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA+LRSA D ++T++R S + ++K++SGA+E +L L+ + G Sbjct: 168 LGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDLRSFLKAKAAEG 227 Query: 207 FQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---- 255 ++ +G S S+ + N I L++G+EG GL +TQ M + Sbjct: 228 WEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLCHQMLVIPSGRA 287 Query: 256 MPGIIKALNVSNAAAVALY 274 + I++LNVS A + L+ Sbjct: 288 LHPGIESLNVSVATGILLH 306 >gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 258 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 17/272 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + SL++S ++R+ H ++ + + L G H + A + + Sbjct: 2 LTSLQNSLVKQIRKLH-----------STKERHKQQLFLLEGTHLLEEACAVNY-PLETV 49 Query: 72 LATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T + A W+ + V + ++ I G+ S T + Sbjct: 50 CCTSDWQAAHSSLWEKASSKSDRTEIVSEEVLNAIA-TTVQPDGVVATAKRTDSQT--QL 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L++ L+ V DP N+G I+R+A A G+ + +S + ++++G + Sbjct: 107 PFTGLVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAM 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL +Q+ G Q + + ++LG EG GL A Sbjct: 167 SVTENLKATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSLILLGNEGAGLSADLAAIAD 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++LNV+ AAA+ LY + + Sbjct: 227 KQVRIPLSPGVESLNVAIAAALMLYEARRQMS 258 >gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 260 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 110/259 (42%), Gaps = 9/259 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---N 76 Y K + N + K+ +++ ++ G T+ A+ + I + + N Sbjct: 2 YIKSKDNDKF--KLTKSLLTTKYRNKEGKYIAEGQRTIELAIEYGA-SIEFVFVNERFYN 58 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLL 135 ++ A+L V + ++V E QG+ + D +N + + Sbjct: 59 DPSKGVLIASLKESTHVYILDDSLFRQVVTTE-NSQGILAVINKKKMDSEDFNKNKHKKI 117 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+D V DP N+G I+R+A A D II K + + +SA G++ ++ + + N Sbjct: 118 VVVDRVQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLDN- 176 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +A + + D++ ++ + AL++G E G+ + + + Sbjct: 177 EEARDLLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKIP 236 Query: 256 MPGIIKALNVSNAAAVALY 274 M G ++LNV+ ++A+ +Y Sbjct: 237 MFGKAESLNVAVSSALLMY 255 >gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] Length = 175 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++ Sbjct: 12 LFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKAST 71 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA+E+IP R++NL+ + ++ G G + K I L++G+EGKG+ Sbjct: 72 GAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMS 131 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + L M G + +LN S AA++ +Y Sbjct: 132 RIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168 >gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 302 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 105/284 (36%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198 I RSA A D ++ T S + + G + +P+ +DA Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILG 234 + +H GF+T ++ D ++ + N +++A++LG Sbjct: 199 DKCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] Length = 252 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 109/275 (39%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A P V + + + + QG+ Sbjct: 46 VQAGV-TIEKIFALESYRDQL---AAFPQTV---WVSEEILRDLADSQ-TPQGIVAIVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D +R + + L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 98 EEVGLPD-LRQGKF-LFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ + ++ + + S K + + L++G EG+G Sbjct: 156 QGSHFHLPIYRMP-VATFVEGAKKSDLPILATTLSRESKDYRELSPLEDFVLVMGNEGQG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 215 ISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249 >gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188] gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188] gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1341] gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0630] Length = 258 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H + A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis audaxviator MP104C] gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis audaxviator MP104C] Length = 272 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 25/284 (8%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ + +E+I LK H K HRD G+ + AL Sbjct: 3 ITSRSNERIKYLKKFHEKK----HRDL---------------ENGFLAEGLKVIEEALQA 43 Query: 64 PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + LL T + L D + Q + + + LAL Sbjct: 44 GWE-VRMLLYTSDVLRHPRGVALLDKARATGTELWECEKQVLAVVTDTKTPQGALALIAK 102 Query: 120 PLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 P S L R + L++VLD + DP N+G I+R+A A G+IT + + + Sbjct: 103 PEHSLDVLLQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVR 162 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GAL H+P L+ G Q L + + AL +G E + Sbjct: 163 ASAGALFHLPAFGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGNEAR 222 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G A + + MPG ++LNV AA++ +Y K Sbjct: 223 GCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLK 266 >gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330] Length = 246 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+++ + + ++ A RL A+ V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAISSGAE-LIRIFALAEYAERL---ADFSQMI---FVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREKIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223 + + + +S G+ H+P R+ + D ++ S + + + + Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSRLPILASTLSFASIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 GSKESFALVMGNEGQGISPEMTAAADILIHISMRGQAESLNVAVAAGILIF 243 >gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] Length = 275 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYQPLSLLMERKQITGPAQEILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P +++ + VL+ + D N+GA Sbjct: 78 DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204 I RSA A + D ++ T + + G + +P+ +I + ++H+ Sbjct: 138 IFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197 Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD ++ K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGR 274 >gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 275 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGHQPLSLLMERKQITGPAQEILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P +++ + VL+ + D N+GA Sbjct: 78 DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204 I RSA A + D ++ T + + G + +P+ +I + ++H+ Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197 Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+T ++ SD ++ K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGR 274 >gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] Length = 296 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H PV + + KI G + L P LS +N++ + +L++V +P N+ Sbjct: 95 EHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNV 154 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMH 203 GAI RSA A D ++ T + ++ + G + IP+ A+ +H Sbjct: 155 GAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMDVLH 214 Query: 204 SWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G++T ++ D ++ E + +K+A++LG EG GL T + M + Sbjct: 215 KLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGV 274 Query: 261 KALNVSNAAAVALYIT 276 +LNV+ A+AVA + Sbjct: 275 DSLNVAAASAVAFWQL 290 >gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 267 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ ++ + + G V ++ L+A + + Sbjct: 17 DYRDLRDVELRKHLEATHGLFLAEGEKVVRRSVEAGFTPRSFLMAPRWLDGLAEVLDR-- 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147 P V +++ G VH+G P++D+ + ++ ++VL+ + D NI Sbjct: 75 SDAPCYVVSAALAEEVTGFH-VHRGALASLERRPLPSVDSVLSGARSVLVLEDIVDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS A D ++ R + K A GA+ +P+ R+ + AL ++ + GF Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLPDWYGALPELSAAGF 193 Query: 208 QTIGLSSDS-KKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T+ L+ + P+E + DK+AL+LG+EG GL P+ ++ A A + M I +LNV Sbjct: 194 TTVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAIIPMREGIDSLNV 253 Query: 266 SNAAAVALYITQNH 279 + A AVA Y+T Sbjct: 254 AAATAVACYVTARR 267 >gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 253 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 28/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K K H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ + D L + T +++ + + QG+ Sbjct: 42 LASGQTP-YDIYATE----KYVDDRALKPFYDKMTQISESVSEHLSDTETPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + ++LD + DP N+G ++R+A A +I + + + ++ Sbjct: 97 QAGQLPDPLSGQ--FLMLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + L ++ + G G D K + + L++G EG G Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248 >gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 272 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 8/256 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY ++ ++R GV + AL LL +++ L L Sbjct: 19 RDYTALKDVQLRARREPAEGLYLAEGVEVIRRALAAGHVP-RSLLLSRSRFEDLADV--L 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVND 143 P V P + G + LA P D + L+VL+ V D Sbjct: 76 PAGATVFVAPVAAFADLTGVDLHRGALASMQRPAQRSVPDLLASLPAGPARLVVLEDVVD 135 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA+ RSA AF DG++ + R + + + G + H+P+ R ++ L + Sbjct: 136 HTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDLDLLR 195 Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S GF L+ + L +++AL+LG EG GL + A + + M + + Sbjct: 196 SAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADLVVRIPMDPRVDS 255 Query: 263 LNVSNAAAVALYITQN 278 LNV+ A+AVAL+ T+ Sbjct: 256 LNVAAASAVALWETRR 271 >gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] Length = 255 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 24/252 (9%) Query: 49 LFLYGVHTVSAALNN---PSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDK 103 + + G H++ L R L K+ R+ V+ + +D Sbjct: 2 IIISGFHSIEERLRASTAEERSGITLYYAKSG-PRVKKIIAQAGQLGVQCIQSTDAQLDS 60 Query: 104 IVGKE----AVHQGLALETAPLLSP-------TLDAV------RNSQLLMVLDHVNDPHN 146 + H+G+ L S +++ + + S L+++ D + DPHN Sbjct: 61 MASSLPESLRAHRGVLLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI+RSA F D +I +R+S +S ++AK ++GA +P I + NL ++ G Sbjct: 121 IGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + + P+ + K LILG+EG G+ + S+ + G + +LNVS Sbjct: 181 FWVYGADASGE-PIGKLSFPQKTLLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVS 239 Query: 267 NAAAVALYITQN 278 AA + LY + Sbjct: 240 VAAGILLYEIRR 251 >gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 332 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 14/260 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLP 88 + Q K R + L G + V+ A S I ++ + + RL Sbjct: 65 RAKQLEKLKRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVRRA 123 Query: 89 H--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLD---AVRNSQLLMVLD 139 PV +D + A HQG+A+E LD ++ + LL+ LD Sbjct: 124 ALLGAPVLETTRLDLDALTDS-AAHQGVAIEVPAYEYTTARDLLDRARSLERTPLLVALD 182 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DPHN+GA+LRSA AF DG+I +R S +A + K ++GA + R +NL AL Sbjct: 183 QVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRAL 242 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ G +GL +E D + L+ GAEG GL +ET +A + + Sbjct: 243 EQVKREGCFVVGLDGSGSTDIEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISR 302 Query: 259 IIKALNVSNAAAVALYITQN 278 +++LN + A ++LY Sbjct: 303 SVESLNAAVATGISLYEVDR 322 >gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] Length = 289 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 9/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++ + +S AL+ + L+ K L + A L Sbjct: 31 YARLTEAQLLNKDHPEDGLFIAESPKVISRALDGGYELVSVLVEKKQVLEDAETIAVLGK 90 Query: 90 --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV T + + K+ G + L L + + VL++V +P N+ Sbjct: 91 CGNVPVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNV 150 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMH 203 GAI RSA A D +I T S ++ + G + IP+ + N + ++ + Sbjct: 151 GAIFRSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILR 210 Query: 204 SWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 GF+T ++ + + +K DK+A+ILG EG GL P+T + M + Sbjct: 211 ELGFKTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGV 270 Query: 261 KALNVSNAAAVALYIT 276 +LNV+ A+AVA + Sbjct: 271 DSLNVAAASAVAFWQL 286 >gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 257 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 18/272 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E++ S+ + H +++KK+Q+ + Q L G H V+ A+ + Sbjct: 2 EELTSVHNQHV-------KNWKKLQT----KKFRRQRGEYLLDGWHLVNEAVKAGIL-LR 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL+ T + L + V P+ + I + QG+A + + A Sbjct: 50 QLIGTADQLTAHRELVDRAAEA--YVVTPEIMQHIT-ETVTPQGIAAIVDLPDAHRVPAN 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD V DP N+G ++R+A A G++ R + + +S G+ H+ Sbjct: 107 IQGA-WLLLDRVQDPGNVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTL 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETA 248 + +L +Q G G + +++ ALI+G EG+G+ Sbjct: 166 LE-GDLHKWVQDFKRIGAPVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAET 224 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T+ ++ M G ++LNV+ +A + ++ Sbjct: 225 TTNLYIPMRGDAESLNVAVSAGILMFQLNQEL 256 >gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 245 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + + R + V V + ++ Sbjct: 23 RQHSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75 Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222 +++ + ++ +S G+ H+P R +++ ++M + + + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 191 VPHQESFALVMGNEGQGISAEMTTLADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] Length = 260 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 8/259 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R + K + G ++ L T+NAL + Sbjct: 4 KITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALEK 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP V DK+ HQG+ TL+ VR + L+ Sbjct: 62 CPELAALPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALER 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G +LRSA AF DG+I ++ + + +++ GA IP I + A+ Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAIT 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G + + +PL + +++G+EG+GL +T S + M Sbjct: 178 LLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMTD 237 Query: 259 IIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 238 RVESLNAGIAGSILLWHFR 256 >gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 263 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 95/258 (36%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNYDRFKE 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144 + + K + QG+ + + + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDAVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYI--TQNHF 280 + +A + +Y Q Sbjct: 243 AAISATLLMYECNRQRRL 260 >gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 277 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + LL T LA L D Sbjct: 24 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLAS-RFTAHALLGTDRRLAELAGDLA-GR 81 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + + ++VG LA V ++ + VL+ VND N+G+ Sbjct: 82 AVPFYRTSAEVMAQVVGFHLNRGVLAAARRVPEPTVAGLVEGARTVAVLEGVNDHENLGS 141 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D ++ + + + G +PY R ++ L+ + GF+ Sbjct: 142 IFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKMLKQKGFRV 201 Query: 210 IGLSSDSKK-PLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ DS L + + ++++IA+++GAEG GL P T + + + M +LNV Sbjct: 202 LAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNV 261 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 262 ATAAALAFYERAR 274 >gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 270 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 16/267 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K+S + R Y++ +SF +K L +YG + V AL +PS +I +L ++ Sbjct: 4 KNSTHNAQRTTLVSYEEKKSFYEK--------VLTIYGRNPVLEALEDPSLQIHRLHLSE 55 Query: 76 NALARLDWD----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + D ++T + + +I QG+AL+ T DA N Sbjct: 56 SNKPSKQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLN 115 Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHI 187 L+ LD V +P N+G I+RS A DGI+ + K +P S + K+++G L I Sbjct: 116 EHKRFRLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKI 175 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P IR +L L+ G + L S + + + ILG E +G+ P+ Sbjct: 176 PIIRADSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAAL 235 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M +++LNV+ A++ + Sbjct: 236 SDERIAIPMNRGVESLNVAVTASLLAF 262 >gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 269 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 103/262 (39%), Gaps = 11/262 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83 + K + + QKS + + G V + + +I L ++ L + Sbjct: 11 QNAKVKNLVALQQKSSERRKQGLFVVEG---VRELIHCAHAGYEIENLFCCRDILDKNPE 67 Query: 84 DANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLD 139 L + V +K+ + + +G+ E D + S L++VL+ Sbjct: 68 AWKLDSLIGQTTIYEVTQAVYEKMAYRGST-EGMMAEVKVKNRTLADLDLPESPLIVVLE 126 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N+GA+LRSA A D +I + + L +S+ GA+ +P + S+ + Sbjct: 127 SVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIFTVPTVACSSQA-CM 185 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + + P A+++G E GL ++ A + + M G Sbjct: 186 NFLKERNIKILTAQLQDSAPYYDSDMRGGTAIVMGTESTGLTDAWRKAADAHIRIPMLGQ 245 Query: 260 IKALNVSNAAAVALYITQNHFA 281 + +LNVS +AA+ ++ + Sbjct: 246 LDSLNVSVSAAILMFEAVRQRS 267 >gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] Length = 258 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVEIYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 261 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 8/256 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLD 82 + K +++ Q+ + + + G+ V+ A+ + + L+ L A Sbjct: 8 NPTIKALRALRQR-KARDEQGRYLIEGIRPVAEAIQCGA-PLDMLVVAPELLNSSFAHEL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 D + TV + K+ QGLA +P + +VL V Sbjct: 66 IDTYAAGGGKILTVSAAVFSSLADKD-NPQGLAAVGRIHYTPLPNLSPAPVGWVVLVEVA 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+A G+I + +++ GAL R ++ D L Sbjct: 125 DPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGALFSQQIAR-TSWPDLLTWA 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +G S + L+LG+E GL + + + M G + Sbjct: 184 RQHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDS 243 Query: 263 LNVSNAAAVALYITQN 278 LN++ AA + +Y Sbjct: 244 LNLAVAAGILMYEATR 259 >gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] Length = 246 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 12/231 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A+ + ++ ++ A ++ L V V P+ + + Sbjct: 24 RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E A + L L+ V DP N+G I+R+A A DG+ Sbjct: 77 ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223 + + + +S G+ H+P R+ + +D ++ S + + S + Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTSDFIRLARSSSLPILASTLSSTSIDYREV 192 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G EG+G+ P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 193 VSKESFVLVMGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIF 243 >gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] Length = 243 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 N +YG ++V LN +I ++ + N L + A H V + + + Sbjct: 2 NNVVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITARR-HRIAVGKARLEKLSE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFS 158 I G HQG+ + + ++ + + L+++L + DP+NIGAI+RSA A + Sbjct: 61 IAGTTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVA 119 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + +A + K+++GAL H+ ++ +L L+ + S FQ + +++ Sbjct: 120 ADAVVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAER 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI+G EG+GL E ++ L M G I++LNVS A V LY Sbjct: 180 NYTDIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMR 239 Query: 279 HF 280 Sbjct: 240 QR 241 >gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 260 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 8/259 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R + K + G ++ L T+NAL + Sbjct: 4 KITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALEK 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP V DK+ HQG+ TL+ VR + L+ Sbjct: 62 CPELAALPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALER 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G +LRSA AF DG+I ++ + + +++ GA IP I + A+ Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAIA 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G + + +PL + +++G+EG+GL +T S + M Sbjct: 178 LLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMTD 237 Query: 259 IIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 238 RVESLNAGIAGSILLWHFR 256 >gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1] Length = 263 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 96/258 (37%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFYDDRFKE 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144 + ++ K + QG+ + + + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYI--TQNHF 280 + +A + +Y Q Sbjct: 243 AAISATLLMYECNRQRRL 260 >gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4244] Length = 258 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H + A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQLLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 274 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TK+ + PV T + Sbjct: 30 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 90 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215 ++ T S + + G + IP+ ++ + + + GF+T ++ SD Sbjct: 150 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 209 Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 210 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 269 Query: 274 YITQN 278 + Sbjct: 270 WQLGR 274 >gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM 519] gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii] Length = 261 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 110/250 (44%), Gaps = 5/250 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ YK S Q S++ + + G+ V A+ NP I+ + ++ + + Sbjct: 8 DNPKYKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENPK-TIYLIFIQEDRINEPRYSN 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V P + + + QG+ S +D + + +++LD + DP Sbjct: 66 IIKNTGDKSFVVPSKLMETISDTVTSQGIVA-ICNFESFMIDDIDFNNDILILDKIQDPG 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A A +I TK + S+ + +SA G+L H+ + I + ++L + Sbjct: 125 NLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDY-ESLNILKKN 183 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ I S ++ K+A++LG E G+ K + + + G ++LN Sbjct: 184 DYKIISSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLN 243 Query: 265 VSNAAAVALY 274 V A + +Y Sbjct: 244 VGIAGGILMY 253 >gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 259 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 18/270 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI S +++ R G ++ Sbjct: 2 EKITSRENAKVKYACR----------LASSGAFRRAEGRFLAEGRKLCPELCRGA--ELE 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L T++AL + + LP V DK+ HQG+ TL+ V Sbjct: 50 TLFCTESALEKCPELSELPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEV 105 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+ V DP N+G +LRSA AF DG++ + + + +++ GA IP Sbjct: 106 KTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPV 165 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQET 247 I + +A+ + G + + +PL D + +++G+EG+GL +T Sbjct: 166 IEAGKMPEAIALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAA 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + M +++LN A ++ L+ + Sbjct: 226 CTGTVRIPMTDRVESLNAGIAGSILLWHFR 255 >gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 285 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96 ++ + + G ++V AA+ S + T A R + V + Sbjct: 29 RAAARKKAGVFLVEGENSVEAAIATGSAT--DVYVTLAAAERFEPIIRTAGYLNIYVHYI 86 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155 K + A GL P+L + +L+ V NDP N G ++R A Sbjct: 87 T-DKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPRLVSVPVETNDPGNAGTLIRVAD 145 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D ++ + +S A++++G+L H+P R +N+ D L ++ + G Q + ++D Sbjct: 146 AMGADAVVFVGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGMQILATAAD 205 Query: 216 SKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ EI A + G E GL + A + + G ++LN++ AA++ + Sbjct: 206 GEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICM 265 Query: 274 YITQN 278 Y + Sbjct: 266 YESSR 270 >gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1] Length = 281 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TKN + PV T + Sbjct: 37 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGHIPVYTAQFDVL 96 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 97 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 156 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215 ++ T S + + G + IP+ ++ + + + GF+T ++ SD Sbjct: 157 VLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 216 Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 217 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 276 Query: 274 YITQN 278 + Sbjct: 277 WQLGR 281 >gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 14/252 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPH--PFPVK 94 K R + L G + V+ A S I ++ + + RL PV Sbjct: 11 KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVRRAALLGAPVL 69 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNI 147 +D + A HQG+A+E T A+ + LL+ LD V DPHN+ Sbjct: 70 ETTRLDLDALTDS-AAHQGVAIEVPAYEYTTARDLLERARALGRTPLLVALDQVTDPHNL 128 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+LRSA AF DG+I +R S +A + K ++GA + R +NL AL+++ G Sbjct: 129 GAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQLKKEGC 188 Query: 208 QTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +GL +E D + L+ GAEG GL +ET + + + +++LN + Sbjct: 189 FVVGLDGSGSTAVEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAA 248 Query: 267 NAAAVALYITQN 278 A ++LY Sbjct: 249 VATGISLYEVDR 260 >gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 161 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 80/152 (52%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 63 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 122 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M G + +LN S AA++ +Y Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154 >gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 11/264 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R++ YK + + +R + L G H + A L+N + LL + A Sbjct: 5 KRITSRDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKH-LLLNEQAQQ 63 Query: 80 RLDWDANLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A L V +T + + + GL + V +SQ ++L Sbjct: 64 DAEIVALLDACVDVPQTQFEDALFAQLSELKTPNGLLALID--IPAAQVEVAHSQFALLL 121 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + DP N+G+ILRSA A CD + + + + S + ++ G + + ++L Sbjct: 122 EDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGGHFALSILESADLLKV 181 Query: 199 LQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + GF + + S ++K L K+A +G EG GL P+ A + M Sbjct: 182 -----ATGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFIIPM 236 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 G I++LN + A AV L+ Sbjct: 237 QGKIESLNAAAATAVCLFEASRQR 260 >gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] Length = 302 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 104/284 (36%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198 I RSA A D ++ T S + + G + +P+ +DA Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILG 234 + +H GF+T ++ D ++ + +++A++LG Sbjct: 199 DKCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 261 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 8/256 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLD 82 + K +++ Q+ + + + G+ V A+ + + ++ + L A Sbjct: 8 NPTIKMLRALRQR-KARDEQGRYLIEGIRLVGEAIQCGA-PLEMIIVAPDLLTSSFAHEL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + V TV + + + KE QG+ +P D V + L V Sbjct: 66 VEHYIAGGGRVLTVSAEVLGSLASKE-HPQGIIGVGRARYTPLADLVAGVNGWVALVDVA 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+A G+I +++ GAL R + L Sbjct: 125 DPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALFSQQIARAG-WDELLAWR 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + IG S + L+LG+E +GL + ++ + M G + Sbjct: 184 QARSLPVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDS 243 Query: 263 LNVSNAAAVALYITQN 278 LN++ AA + +Y Sbjct: 244 LNLAVAAGILMYEITR 259 >gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5] gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5] gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0027] Length = 258 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 24/279 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H + A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQLLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ T ++ M G ++LNV+ AA V ++ +N Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFEN 256 >gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] Length = 224 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 18/233 (7%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 GV++++ AL + ++ ++ R+ V V + + K Sbjct: 5 GVNSIAEALKAG--VVNKIYVGEHINPRVAKILAEAKKQKVPIVKVKNLKK--------- 53 Query: 113 GLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + +P+ D A+R + ++ LD V DP N+GA+LR+A F C G++ KR Sbjct: 54 -IEADVSPVKYYDFDFVVEKALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKR 112 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + + + + GA H+ R+ NL ++++K+ +GF +G K L Sbjct: 113 RAAQVTETVVEVSQGAAFHLKISRVENLANSIKKIKKYGFLVVGAEI-GGKDLRSVKFTP 171 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G E +G+ ++ + + G +LN+S AA + LY + H Sbjct: 172 PLALVVGGEDRGISQPVKKMCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224 >gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 4/269 (1%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S D R + K++++ R T + + GVH + A+ + R + Sbjct: 18 SPNDRLRLITSRQNNAVKELRAAFHTGRPTDDGYSA-VEGVHLLEEAIRSGLR-FKTIFF 75 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132 ++ A R H + P + QG+A D +R + Sbjct: 76 SQAAEDRAGKLLPQIHSNVETLLLPDEVFSSAVLTESPQGVAALVKLKTFKLEDLLRAEN 135 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L+ + V DP N+G ILRSA AF G++ + + + + + +SG++ +P +++ Sbjct: 136 PMLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVIRGSSGSVFRLPVVKV 195 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 AL+++ + G Q + SS +PL + +++G EG G+ + Sbjct: 196 E-WPAALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTL 254 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +++LN AA++ +Y Sbjct: 255 AIPHSPKVESLNAGIAASIVMYEAARQRN 283 >gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 23/269 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI S K+S +++ K+++ N + + L G H V AL + F Sbjct: 2 EKISSTKNSKV-------KEWVKLKTNNGRKKFKK----FLLEGRHPVETALEQATEYEF 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALE--TAPLLSPTL 126 ++ L L + V + + I + VH QG+ L Sbjct: 51 LIVQEDFDLGELAEQVDNDKLI---LVTKEVANHIS--DTVHDQGIFLIGYINEEDWQFP 105 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + +VLD+V DP NIG ++R+A A G++ + + + ++ G+ H Sbjct: 106 DDLSGK--WLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAMQGSQYH 163 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + R+ NL ++ G G D + + + D+ +LI+G EG G+ + Sbjct: 164 LQLKRL-NLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGMSERLI 222 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 E ++ + G ++LNV+ AA V ++ Sbjct: 223 EMTDMNLYIPIKGSAESLNVAVAAGVLMF 251 >gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] Length = 246 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A + + LD A P V + + + + QG+ Sbjct: 40 VQAGV-TIEKVFALE---SYLDQLAAFPQTV---WVSEEILLDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L L+ V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ + + + + + S K + + L++G EG+G Sbjct: 150 QGSHFHLPIYRMP-VATFVVEAKKSNLPFLATTLSRDSKDYRELSSLENFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 270 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V + + LL T L L D + Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA + P DA+ ++ + VL+ VND N+G Sbjct: 75 VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +P+ R + D L + GFQ Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDKGFQ 194 Query: 209 TIGLSSD-SKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D + L + +K+A ++GAEG GL + + + M +LN Sbjct: 195 LLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 255 VATAAALAFYERVR 268 >gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc gasicomitatum LMG 18811] Length = 257 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 114/275 (41%), Gaps = 25/275 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I ++ ++ + K R+ +R Y L G H V A Sbjct: 1 MDRILSNQNNRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K ++AT+ + ++PH P + + I G QG+ E + Sbjct: 42 VKANA-KFHAVMATEEQMQ--THLPDVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++LD + DP N+G ++R+A A G++ + + + S + ++ Sbjct: 98 PDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + +L + + + G +S + + + + ALI+G EG+G Sbjct: 158 QGSQFHLEVL-TGDLVEWTDALTANNLSVYGSQLNESARSYREIESSTQFALIVGNEGQG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T+ ++ + G ++LNV+ A + ++ Sbjct: 217 MSDELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1] Length = 302 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 104/284 (36%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198 I RSA A D ++ T S + + G + +P+ +DA Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILG 234 + +H GF+T ++ D ++ + +++A++LG Sbjct: 199 DKCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122] gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122] Length = 246 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKIGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11] gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46] Length = 246 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] Length = 263 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 96/258 (37%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNDDRFKE 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144 + ++ K + QG+ + + + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYI--TQNHF 280 + +A + +Y Q Sbjct: 243 AAISATLLMYECNRQRRL 260 >gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20] gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20] Length = 257 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 ++I S ++S + + K+ + +K R ++ L G H V A+ + K Sbjct: 2 DRILSNQNSRV-------KAWAKLAT--KKGRQENR--TYLLDGWHLVEEAIKAKA-KFH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT+ +A D +PH P V + I G QG+ E + Sbjct: 50 AVMATEAQMAEHLND--VPHGVPAFEVSEEVAKHIAGTN-TPQGIFAEISLPDKTFDPTY 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + LD++ DP N+G ++R+A A G++ + + S + ++ G+ H+ Sbjct: 107 VHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVRAMQGSQFHLEI 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L + + + G G ++ K + + ALI+G EG+G+ + Sbjct: 167 LN-GDLHEWTDALTANGLPVYGSQLNEAAKSYRTIQPSTQFALIVGNEGQGMAESLADKT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + ++ Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251 >gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan troglodytes] Length = 353 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 125/307 (40%), Gaps = 53/307 (17%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-----------------FLYGV 54 + +++D+ + +L H F+ +RH +P L+G+ Sbjct: 4 LSTVRDATWGRLVTRH--------FSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGM 55 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEA 109 AL R + +LL A L PV Q +D + + Sbjct: 56 SPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQ- 114 Query: 110 VHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ +E +PL + QL +VLD + DP N GA+LRSA D + Sbjct: 115 VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKV 174 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSD 215 IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 175 ITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ 234 Query: 216 SKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSN 267 S + + + L+LG EG GL + Q + + + +P +++LNVS Sbjct: 235 SSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSV 294 Query: 268 AAAVALY 274 AA + L+ Sbjct: 295 AAGILLH 301 >gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M] gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M] Length = 279 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 25 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKDDLA-G 82 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V P + ++VG LA + + V ++ + VL+ VND N+G Sbjct: 83 VGVPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLG 142 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +PY R ++ L + GF+ Sbjct: 143 SIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 202 Query: 209 TIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + + +AL++GAEG GL + + M +LN Sbjct: 203 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 262 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 263 VATAAALAFYERAR 276 >gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] Length = 283 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 19/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85 + ++ +S+ + + AL + L+ K A + A Sbjct: 16 FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P + K+ G E L P L D VR ++ + VL+ + + Sbjct: 76 RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHT 135 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------------S 193 N+GAI RSA A D ++ T + + G + +P+ RI Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250 D + +H GF+T + D PL+ N +++AL+ G EG GL T Sbjct: 196 WAPDGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AVA + + Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus CGS00] Length = 246 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 289 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 110/280 (39%), Gaps = 23/280 (8%) Query: 20 YAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +A LR + R DY +++ +SR + + A+ R L + Sbjct: 7 HADLREDPRLTDYTRLKDVKLRSRIEPERGLYMAESATVIERAIAAGHRP-RSFLVSARW 65 Query: 78 LARLDWDANLPHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 L L PV P + ++++ G LA P L + + + Sbjct: 66 LPTLRPLIAAATGSFEDGEVPVFVAPEEVLERMTGFHLHRGALAAMQRPQLPSVVQLLTS 125 Query: 132 S------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + ++VL+++ D N+GA RSA A D ++ T + + + G + Sbjct: 126 AQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVF 185 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI-------KNDKIALILGAEG 237 +P+ R+ + + + GF L+ + L+ + ++A+++G EG Sbjct: 186 QVPWTRLESWPGDIALLRDAGFTLASLALCEDSISLDDFAALPALRGPDARLAIVMGTEG 245 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL T + + M + +LNV+ A+AV + T+ Sbjct: 246 HGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 245 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + + + R + V V + ++ Sbjct: 23 RQQSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75 Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222 +++ + ++ +S G+ H+ R +++ ++M + + + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLSIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 191 VPHQESFALVMGNEGQGISAEMTALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 257 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S +++ + + K+ + + + L G+H V A+ + K Sbjct: 2 ERIISNQNARV-------KAWAKLAT----KKGRQENHTYLLDGLHLVEEAVKAGA-KFH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT+ +A D+ N+PH P + + I G QG+ E + + Sbjct: 50 AIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPEKTFDPSY 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DP N+G ++R+A A G++ + + + + ++ G+ H+ Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEV 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L++ + + + G + K K + + LI+G EG+G+ + E Sbjct: 167 LN-GDLSEWVAALAANNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + ++ Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251 >gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 269 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 6/266 (2%) Query: 19 HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 HY + + R DY ++ + + + AL + + Sbjct: 4 HYLESAADPRVSDYTQLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L L P +++I G +A P P D + ++ + Sbjct: 63 WLDDLQDVLGAYPDVPAFIGSAALLEEITGFHLHRGAMAAMQRPAPVPLPDLLAGARRVA 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+S+ Sbjct: 123 VLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWP 182 Query: 197 DALQKMHSWGFQTIG--LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAH 253 L + GF L++D++ +N +K+AL+LG EG G+ +T Sbjct: 183 QDLYLLKEHGFTVAALELTADARDVDAVAAQNPEKLALVLGTEGAGMSAETLAAVDLAVK 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M + +LNV+ A+AVA + + Sbjct: 243 IPMRNGVDSLNVAAASAVAFWELRAR 268 >gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus] gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a [Rattus norvegicus] Length = 320 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 28/251 (11%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIV 105 L+GV AL R + +LL A L PV Q +D + Sbjct: 50 LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQKLDALC 109 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158 G + VHQG+ +E + L D ++ QL +VL+ + DP N+GA++RSA Sbjct: 110 GYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSAYFLG 168 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL------ 212 D +IT++R S + V++K+++GA+E + +L LQ G+ +G Sbjct: 169 VDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTVGCPGP 228 Query: 213 --SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKAL 263 S SK P+ + I + L+LG EG GL T + + H+P +++L Sbjct: 229 EISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPPGLESL 288 Query: 264 NVSNAAAVALY 274 NVS A + L+ Sbjct: 289 NVSVATGILLH 299 >gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 280 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 7/242 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + + ALN + L+ K A + PV T + Sbjct: 30 NEPKPGIFIAESPNVIERALNAGYEPLAVLIEEKQADDLIPKLFFAYPELPVYTAKFDLL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + G L +L + + VL++V +P NIGAI RSA A D Sbjct: 90 TNLTGFALTRGLLCAMKRKILPSVAEICEGKHRIAVLENVMNPTNIGAIFRSAAALGMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWGFQTIGLSS-DS 216 ++ T S A+ + G + IP+ D L+ + S GFQT ++ + Sbjct: 150 VLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNADLSCGGLEALRSLGFQTAAMALKED 209 Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + +K+A+ILG EG GL T + M + +LNV+ A+AVA + Sbjct: 210 SVSIDDPKLLAAEKLAVILGTEGDGLASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFW 269 Query: 275 IT 276 Sbjct: 270 EL 271 >gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] Length = 246 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-IIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] Length = 282 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + AL+ + L ++ P Sbjct: 20 LTEAQLRNRLDPAKGVFIAESPKVIRVALDAGYEPLSLLCERRHLTGDAADILARVGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + ++ G L P + + ++++ ++V+ V D NIGAI R Sbjct: 80 VYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T + + + G++ +P+ L+ + GF+T L Sbjct: 140 SAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWAD---RPLECLKELGFKTAAL 196 Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D PL+ + ++AL++G EG GL + A +A + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWELR 264 >gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON] gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON] Length = 261 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 5/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S S + F+ G + A+ +F + ++ + L Sbjct: 7 NPRIKLVRSLA-SSHGRKKSGLYFIEGAKLIEEAIKANEDILFIVYSSDFGDSTLLKLI- 64 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPH 145 + +V P I A QG+ + + LL+VLD V DP Sbjct: 65 IDRDIDNFSVLPDVFVNIADT-ATPQGVLAVLKQQQRDWHEIMMLEHCLLLVLDAVQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A +I + + + + ++A G+ H+P L +AL ++ Sbjct: 124 NVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSFHMPVYNDVPLPEALTELMER 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + +++ D+ A+I+G E +G+ K + A + MPG ++LN Sbjct: 184 -VSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAAYTVSIGMPGRAESLNA 242 Query: 266 SNAAAVALYITQNH 279 S AA + +Y Sbjct: 243 SIAAGIIMYEISRR 256 >gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] Length = 236 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 15/247 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + +QK S + G H A+ I ++ A +N +L A P Sbjct: 3 KNAKKLHQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRNQL---AAFPQT 55 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + + QG+ D + + L+ V DP N+G I Sbjct: 56 V---WISEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G+I + + + S +S G+ H+P R+++ L + + Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168 Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + +E+ + + L++G EG+G+ P E+A + H+ M G ++LNV+ AA Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228 Query: 270 AVALYIT 276 + ++ Sbjct: 229 GILIFYL 235 >gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] Length = 262 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 112/266 (42%), Gaps = 11/266 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEMCV-VTEGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137 + A + + V P + + VH G+ L L +P + V + +V Sbjct: 61 HDEAQAIVSRIDSQRIVTLPDALFGQLS-NVVHGVGMLLLVEKLDTPLPETVGQT--CIV 117 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V D N+G+ILRSA A + + + S+ + +S GA + + Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAQT 177 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++++ + S + + + ++A + G EG G+ ++ + + P Sbjct: 178 LIERLA---VPVVITDSHGAEAIYDCDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQP 234 Query: 258 GIIKALNVSNAAAVALYI--TQNHFA 281 G +++LNV+ AAAV ++ Q A Sbjct: 235 GGMESLNVAAAAAVCMFEQCRQRRAA 260 >gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 297 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TK+ + PV T + Sbjct: 53 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 112 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 113 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 172 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215 ++ T S + + G + IP+ ++ + + + GF+T ++ SD Sbjct: 173 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 232 Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++ +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 233 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 292 Query: 274 YITQN 278 + Sbjct: 293 WQLGR 297 >gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum subsp. pallidum str. Chicago] Length = 292 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 47/276 (17%) Query: 49 LFLYGVHTVSAALNNPS--------------------RKIFQLLATKNALARLDWDANLP 88 + + G+ + L R + A +NA + Sbjct: 1 MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAA 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAV----HQGLAL---------------ETAPLLSPTLD-- 127 + +DK+ H+G+ + P + + + Sbjct: 61 RGIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERT 120 Query: 128 -----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 A L++VLD + DPHN+GAI+RSA FS D ++ + + + + ++G Sbjct: 121 LLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAG 180 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A+ +P +R+ NL + GF G + + K AL+LG EG G+ P Sbjct: 181 AVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEA-IGARTFPPKTALVLGNEGHGVSP 239 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G + +LNVS AA + LY + Sbjct: 240 LLRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRR 275 >gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413] gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413] Length = 260 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 101/272 (37%), Gaps = 17/272 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + SL++S ++R+ H ++ + L G H + A + + Sbjct: 2 LTSLQNSLVKQIRKLH-----------STKERHKQGLFLLEGTHLLEEACAMDY-PLEVV 49 Query: 72 LATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T A W+ + V + + I G+ S + Sbjct: 50 CCTPEWEASHTALWEEACNRCDRCEIVSEEVLQAIA-TTVQPDGVVATAK--RSELQSQI 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++ L+ + DP N+G I+R+A A G+ ++ ++ + ++++G + Sbjct: 107 PFTGVVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLAT 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L +Q G Q + +K + + ++LG EG GL P A Sbjct: 167 AVSEDLKATVQLCQQAGMQVVATLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMAD 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++LNV+ +A+ LY Q Sbjct: 227 QEVKIPLSPGVESLNVAITSALMLYEVQRQLN 258 >gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 257 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S +++ + + K+ + + + L G+H V A+ + K Sbjct: 2 ERIISNQNARV-------KAWAKLAT----KKGRQENHTYLLDGLHLVEEAVKAGA-KFH 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 ++AT+ +A D+ N+PH P + + I G QG+ E + + Sbjct: 50 AIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPEKTFDPSY 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD + DP N+G ++R+A A G++ + + + + ++ G+ H+ Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEV 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +L++ + + + G + K K + + LI+G EG+G+ + E Sbjct: 167 LN-GDLSEWVAALATNNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 T+ ++ + G ++LNV+ A + ++ Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251 >gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 285 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96 +S + + G ++V AA+ S + T A R + V + Sbjct: 29 RSAARKKAGVFLVEGENSVEAAIATGSAT--DVYVTLAAAERFEPIIRTAGYLNIYVHYI 86 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155 K + A GL P+L + QL+ V NDP N G ++R A Sbjct: 87 T-DKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPQLVSVPVETNDPGNAGTLIRVAD 145 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D ++ + +S A++++G+L H+P R +N+ D L ++ + G Q + ++D Sbjct: 146 AMGADAVVFAGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGLQILATAAD 205 Query: 216 SKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+ EI A + G E GL + A + + G ++LN++ AA++ + Sbjct: 206 GEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICM 265 Query: 274 YITQN 278 Y + Sbjct: 266 YESSR 270 >gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] Length = 244 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 117/240 (48%), Gaps = 17/240 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N +L +K + ++ + L ++ + + KI+G H+G Sbjct: 7 NSIIESIKNNKG--LRLYISKTSPKSINIE-KLAKEHKIQIIKVNDLAKIIGNND-HRGF 62 Query: 115 ALETAPL-----------LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ L L L+ + N+ +++LD + DP N GAILR++ F+ D Sbjct: 63 ALKLKTLKSNNTKKQDKNLEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNIDL 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +IT++R S ++A + +++SGA +++ + + N+ + ++ + GF K Sbjct: 123 VITSQRRSAKDNATILRTSSGASQYVNKLVVPNINNVIKYLKKNGFWIYASDIKGKAINT 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I + KIALI+G EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 183 TPINDTKIALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 245 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A + + + R + V V + ++ Sbjct: 23 RQHSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75 Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 76 TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222 +++ + ++ +S G+ H+P R +++ ++M + + + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 191 VPHQESFALVMGNEGQGISAEMTILADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] Length = 366 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 11/233 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP--P 98 + + G + V AL + RL L + V Sbjct: 115 RRPGETDELVVGRNAVVEALRAGIPAATLYVAGGLEFDERLTEARKLAGRAGMAVVDIGR 174 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152 +D++ G A HQGLAL P D + + LL+ LD V DP N+GA++R Sbjct: 175 FELDRLCG-VAPHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVVR 233 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ +R + +A K+++GA +P R +NL L+ G +GL Sbjct: 234 SAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVGL 293 Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++++ L+ D I L++G+EG+GL E + + M G +++LN Sbjct: 294 AANADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346 >gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635] gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635] Length = 246 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSEI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 281 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 31/280 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75 +++ K + +K++ ++ G A P + Q+ ++ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62 Query: 76 --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L R + + + V K V QG+ Sbjct: 63 MQDCMESCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119 Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ Q L++L+ + DP N+G ++R+ G+I + + +S Sbjct: 120 EYALEELIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P+ +L + + ++ K A ++G EG GL Sbjct: 180 MGSIYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + A + + M G +++LN + +A++ +Y T Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 256 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 19/267 (7%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI S+K+S +++ K+++ N + ++ FL G H V AL + + Sbjct: 3 EKISSVKNSKV-------KEWVKLKTNNGRKKYRR----FFLEGRHPVETALVEERQ--Y 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDA 128 + L + +AN+ + V + I + VH QG+ L + Sbjct: 50 EYLIVEEGFDLASLEANVDEDKLI-VVTKEVSKHIA--DTVHEQGIFLIGYVEDAVYEMP 106 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++LD+V DP NIG ++R+A A G+I + + + ++ G+ H+ Sbjct: 107 NDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQYHLQ 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R+ NL ++ H G D + +LI+G EG G+ P+ + Sbjct: 167 LKRL-NLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNGMSPELVKA 225 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA V ++ Sbjct: 226 TDCNLYIPIKGNAESLNVAVAAGVLMF 252 >gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] Length = 253 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 18/269 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S +S +++KK+ + + R L G+H V AL +K+ + Sbjct: 2 EITSTSNSRV-------KEWKKLNTKKGRKRQNK----YILDGLHLVKEALKAN-KKVEE 49 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LL T + L+ + +P V + + + K + + QG+ + + Sbjct: 50 LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++LD V DP NIG ++R+A A G+I + + + + ++ G+ HI I Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL+ ++ G + + ++ AL++G EG G+ + E + Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTS 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + ++LNV+ AA + ++ + Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253 >gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense DSM 16994] gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense DSM 16994] Length = 225 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 4/225 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG V A+ +I L K L + ++ + + F +K +P + +V K Sbjct: 1 MIIYGKQPVYYAIERHRERIKVLYLAKE-LDKKEYSSLMKMGFEIKRIPEKAAQSMV-KG 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG E + ++ ++ ++VL + D NIG+++RSA A ++ + Sbjct: 59 GNHQGFIAEISQVVPYASPFLKKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVISGIK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 P+ A++ +++SGA +P + I N+ D L ++ GFQ G D E + Sbjct: 119 DPNLEAMI-RTSSGAALDLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFAAKR 177 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+LG EG+GL + Q++ + M +LNV A A+ + Sbjct: 178 V-LVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM 221 >gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894] Length = 357 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 113 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 172 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++D + ++ L+ V +PHN+GAI+RS Sbjct: 173 ELTKASGTE-HHGGVCFLIKKRSGASVDQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 231 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ S ES ++A G EH+ I + +DAL + + G+ + SS Sbjct: 232 HFGVKGVVVQDA-SLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 290 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 PL + K+ L+LG E +G+ TQ A + G +++LNVS A V L Sbjct: 291 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 350 Query: 274 YITQN 278 + QN Sbjct: 351 WWRQN 355 >gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus N315] gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus Mu3] gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115] gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300] gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315] gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115] gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300] gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981] gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA131] gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA177] gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus T0131] gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21172] gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21193] gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21189] Length = 246 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 278 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 13/263 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL------- 81 D + + + +++ + G + V L + R LL T + L +L Sbjct: 16 DLRDLNNSDRRPDLPGGRGLVIAEGTYVVGRMLLSRFRP-HVLLGTDSRLQQLRREATAE 74 Query: 82 DWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 WDA+ V + +++G + LA P + V ++ L+VL+ Sbjct: 75 GWDADERAGDAVYLRTTKDVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGARTLVVLEG 134 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLT 196 VNDP N+GAI R+ A DG++ + + + G + +P+ + + Sbjct: 135 VNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGTPTTWQ 194 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 +L + GF+TI L+ ++ PL + + +K+A +LGAEG GL A + M Sbjct: 195 RSLDDLRERGFRTIALTPAAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACDVRAAIPM 254 Query: 257 PGIIKALNVSNAAAVALYITQNH 279 +LNV+ AAAVA Y Sbjct: 255 TDGTDSLNVATAAAVAFYERARR 277 >gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 264 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 100/258 (38%), Gaps = 9/258 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K++ + +++ + G+ + L T+ A + Sbjct: 7 NKQVKRVVNLRNRAKARREEGVYVAEGLRMCREL---SIKDTEILYVTEG-FAGDRENRK 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVN 142 F + V + K++ QG+ D ++ + +MVL+ + Sbjct: 63 WMDGFRFEIVTDVVM-KVMADTQTPQGVLAVARQKTYTLEDILKAPRNGKLAIMVLETIQ 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A GI+ + + + + +S G++ +P++ + ++ A Q M Sbjct: 122 DPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSICRMPFVCVDDIRQACQTM 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + +QE D + ++G E GL T A + M G +++ Sbjct: 182 KDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEAGGLTDGTAAMADCYVKIPMAGRVES 241 Query: 263 LNVSNAAAVALYITQNHF 280 LN + AA+V ++ Sbjct: 242 LNAAVAASVLMFEAARQR 259 >gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 246 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 118/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MIQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 246 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QKLIIPIYGKAESLNVAIAGSILLY 242 >gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 15/251 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97 ++ ++ G + V L P+ ++ + +N RL + + V Sbjct: 73 RAAEDGPEYVLGRNPVVECLRADVPATALYVAVGAQN-DERLTESVRMAADKGISILEVQ 131 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 +D++ + +HQG+AL+ P + + + +++ LD++ DP N+GA+ Sbjct: 132 RAELDRM-SENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDNITDPRNLGAV 190 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF G++ R S + +AV ++++GA +P + NL L + G Q + Sbjct: 191 IRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYAAAGLQIV 250 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL + L+ + + +++G+EGKGL +E S+ + + +++LN S AA Sbjct: 251 GLDAGGDVTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESLNASVAAG 310 Query: 271 VAL--YITQNH 279 V L + Q Sbjct: 311 VVLADFARQRR 321 >gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51] gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 285 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 31/289 (10%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 ++++ ++E++ + + H K R + + G V L Sbjct: 14 DMLTSLQNEQVKYVVNLHKRKFREEN-------------------GEFLIEGWRFVEEGL 54 Query: 62 NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + K+F KN +A PV V + + K+ E QG+ Sbjct: 55 ARGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTE-NPQGILAVVK 113 Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 D + +L++LD V DP N G ILR+A+A + T+ Sbjct: 114 QSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDL 173 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + +S GA+ + + L+ S ++ L + +AL Sbjct: 174 YNLKVLRSTMGAIFSLNIATHCQPEEILKVCRSHKIPVFVGDAEG-TDLYETHFAQPMAL 232 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G EG G + + M +++LNV+ A + LY + Sbjct: 233 VVGNEGNGPSAAFRGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRM 281 >gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 265 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 105/270 (38%), Gaps = 16/270 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I SL++ ++R+ HR + + + G H + A + + + + Sbjct: 2 ITSLQNPLIKQMRKLHR-----------PKGRREQNLFLIEGTHLLETAC-SVNSSLDVV 49 Query: 72 LATKNALA--RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T + W+ + V P+ + I G+ + +L A Sbjct: 50 CCTPQWQTNHKQLWEKAQSLAQRTEVVTPEVLAAIA-TTINPDGVVASATRIFEDSL-AK 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L ++L+ + DP N+G I+R+AVA D + T ++ + ++++G +P Sbjct: 108 SPLSLGLMLERLQDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPM 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL ++ Q IG K + ++LG EG GL P+ Sbjct: 168 RVSDNLGALIEGYKRQQVQVIGTLPQGNKTYWEIDFTRPTLILLGNEGAGLTPELVSLVD 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LNV+ AAA+ LY + Sbjct: 228 QQVTIPLGGGVESLNVAIAAALLLYEAKRQ 257 >gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] Length = 236 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 15/245 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + QK S + G H A+ I ++ A +N +L A Sbjct: 3 KNAKKLRQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRDQL---ATFSQT 55 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + + + QG+ D + + L+ V DP N+G I Sbjct: 56 V---WVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G+I + + + S +S G+ H+P R+++ L + + Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168 Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + +E+ + + L++G EG+G+ P E+A + H+ M G ++LNV+ AA Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228 Query: 270 AVALY 274 + ++ Sbjct: 229 GILIF 233 >gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 253 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 113/269 (42%), Gaps = 18/269 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S +S +++KK+ + + + L G+H V AL +K+ + Sbjct: 2 EITSTSNSRV-------KEWKKLNTKKGRKKQNK----YILDGLHLVKEALKAN-KKVEE 49 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LL T + L+ + +P V + + K + + QG+ + + Sbjct: 50 LLIT-SKFEHLN-EIEIPDETKVIMISKEV-SKSISETQTPQGIFGIVSIEEEKITYPQK 106 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++LD V DP NIG ++R+A A G+I + + + + ++ G+ HI I Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL+ ++ G + + ++ AL++G EG G+ + E + Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEILEMTS 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + ++LNV+ AA + ++ + Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253 >gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus ST398] Length = 246 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 116/265 (43%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQRGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +L + + + G + ++ ++ +D AL+LG EG+G+ P+ T Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] Length = 260 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ ++ + L G+H SA L+ + + T AL+ + Sbjct: 6 SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPELCV-VTDGALSHDET 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + P + V P + + G+ L + R ++ MVLD V Sbjct: 65 QAIVARVEPQRVVSLPDALFGQLSSVVNGIGMLLLVERPAAELP--GRVARTAMVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +S GA + + ++ Sbjct: 123 DAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEAEALIPRL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + ++ +A + G EG G+ +E A + PG +++ Sbjct: 183 ---DVPVALTDSHGAQAIDDCDLTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ AAAV L+ K Sbjct: 240 LNVAAAAAVCLFEQCRQQRK 259 >gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 269 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+ I LL P+ Q + +I G L Sbjct: 49 ALDAGYEPISLLLEKGQTEKEAAEIIERCENAPIYIAESQVLTQITGFHLTRGVLCAMRR 108 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +L V+++ + VL++V +P N+GAI+R+A A D ++ T + A+ Sbjct: 109 KVLPSVESLVKDAHRIAVLENVTNPTNLGAIVRNAAALGLDAVLFTHGSTDPLYRRAARV 168 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKN-DKIALILGAE 236 + G + IP+ + ++ + + GF+T+ ++ D+K + E+KN DK+A+ LGAE Sbjct: 169 SMGTVFQIPWTFLPEGSE-IDTIKGLGFKTVAMALRNDTKDISDPELKNADKLAIFLGAE 227 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G GL P+T + M + +LNV+ +AVA + Sbjct: 228 GDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAFWEL 267 >gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 270 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V + + LL T L L D + Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA + P DA+ ++ + VL+ VND N+G Sbjct: 75 VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +P+ R + D L + GFQ Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDKGFQ 194 Query: 209 TIGLSSD-SKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D + L + +++A ++GAEG GL + + + M +LN Sbjct: 195 LLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 255 VATAAALAFYERVR 268 >gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa] gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa] Length = 571 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 133/335 (39%), Gaps = 62/335 (18%) Query: 1 MNLISKKKSEKIF-SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF--------- 50 + ++ + +KI + + + D+++ + R T + F Sbjct: 217 LEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRWNRQDNWGRKTWKEATEFTVPKIVGEG 276 Query: 51 LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWD-----ANLPHPFPV--KTVP 97 ++GV V AAL+ R+ + L + N R D + + K V Sbjct: 277 VFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMAKKIGLSTKEVS 336 Query: 98 PQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 ++ IV HQGL L+ +PL L L L + LD V DP N+GAI Sbjct: 337 KHDLNMIVD-NRPHQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAI 395 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA F G++ + S S V++K+++G+LE + N+ L G++ + Sbjct: 396 IRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVL 455 Query: 211 GLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-------PGI--- 259 G S SK L + + L+LG+EG GLRP + + T + + G Sbjct: 456 GGSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPVDATVGGGDE 515 Query: 260 --------------------IKALNVSNAAAVALY 274 +++LNVS AA V L+ Sbjct: 516 VKDEEINLECSSAEFRSFLAVESLNVSVAAGVLLH 550 >gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2] gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2] gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] Length = 258 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K+ ++ K H K R + + G H V A Sbjct: 1 MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + + QG+ Sbjct: 42 VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ ++LD++ DP N+G ++R+A A G+I K + + + +S Sbjct: 99 LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P ++ LT+ +Q G G ++ ++ + ALILG EG G Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 218 VLPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 275 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 19/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ + ++ G + A+ R + +L T L RL A++ Sbjct: 15 DYVRLRDSELRKSLEAERGLFIAEGEKVIRRAVATGHR-LRSVLTTAKWLDRL---ADVI 70 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--------LLMVLDH 140 P V + + I G + VH+G P++ + +++L+ Sbjct: 71 GDVPTYLVSDEVMRGIAGFQ-VHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILED 129 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GAI R A A D II + R + K + GA+ IPY R+ + L Sbjct: 130 LVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLG 189 Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---- 255 ++ + GF+ + L+ D S PL + +++AL+LG+EG GL + + A + Sbjct: 190 EVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSPA 249 Query: 256 -MPGIIKALNVSNAAAVALYITQN 278 M + +LNV AAA+A + Sbjct: 250 AMARGVDSLNVVAAAAIACHGLMR 273 >gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] Length = 236 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 15/245 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + +QK S + G H A+ I ++ A +N +L A P Sbjct: 3 KNAKKLHQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRNQL---AAFPQT 55 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + + QG+ D + + L+ V DP N+G I Sbjct: 56 V---WISEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G+I + + + S +S G+ H+P R+++ L + + Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168 Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + +E+ + + L++G EG+G+ P E+A + H+ M G ++LNV+ A Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228 Query: 270 AVALY 274 + ++ Sbjct: 229 GILIF 233 >gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] Length = 275 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 6/246 (2%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +RH + + AL+ I LL + + + PV T Sbjct: 28 NRHEPEKGVFIAESPKVIGRALDAGCVPISLLLERAHVEGQGKEIISRCGEIPVYTAEFD 87 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + K+ G + L P L R ++ + VL++V +P NIGAI RSA A + Sbjct: 88 VLTKLTGFKLTRGMLCAMYRPKLPAVEAVCRGARRIAVLENVMNPTNIGAIFRSAAALNM 147 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDS 216 D ++ T S + + G + +P+ + ++ + GF+T ++ Sbjct: 148 DAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLGFKTAAMALSD 207 Query: 217 KKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + D++ALILG EG GL +T + M + +LNV+ A+AVA Sbjct: 208 ESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSLNVAAASAVAF 267 Query: 274 YITQNH 279 + + Sbjct: 268 WQLGSR 273 >gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 283 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 19/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85 + ++ +S+ + + AL + L+ K A + A Sbjct: 16 FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P + K+ G E L P L D VR ++ + VL+ + + Sbjct: 76 RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHT 135 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------------S 193 N+GAI RSA A D ++ T + + G + +P+ RI Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195 Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250 + +H GF+T + D PL+ N +++AL+ G EG GL T Sbjct: 196 WAPTGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AVA + + Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] Length = 258 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 13/260 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLD 82 R++ YK++ +R+ ++ L G H + A L+ LL A A + Sbjct: 6 SRDNPFYKELVKLTASTRNRNKAGQTLLDGAHLLKAYLDAGYTPRHILLNAAALQDAEIT 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 PV + + ++ + LAL P + ++ ++L+ V Sbjct: 66 SLRQRITGAPVTQLDDKLFAELSELKTPTGILALIDLPPAK-----IVTARFALLLEAVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G++LRSA A CD + + + + S + ++A G + +L Sbjct: 121 DPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMGGHFCLAIYEQQDLFKV---- 176 Query: 203 HSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G+ + + + + L IA ++G EG GL P+ + AT + MPG + Sbjct: 177 -AQGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALATHPVTIPMPGAV 235 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + A A+ L+ Sbjct: 236 ESLNAAAATAICLFEAVRQR 255 >gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] Length = 236 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 15/245 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + QK S + G H A+ I ++ A +N +L A Sbjct: 3 KNAKKLRQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRDQL---ATFSQT 55 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + + + QG+ D + + L+ V DP N+G I Sbjct: 56 V---WVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G+I + + + S +S G+ H+P R+++ L + + Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168 Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + +E+ + + L++G EG+G+ P E+A + H+ M G ++LNV+ A Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228 Query: 270 AVALY 274 + ++ Sbjct: 229 GILIF 233 >gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 239 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 12/230 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+NN + I ++ + ++ + + V + + H Sbjct: 5 FGKKALLDAINN-KQIISKVYLLEKNYELINLI--NKNQISYEVVNERWFKQ-FDHSLNH 60 Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 Q +A L +L++ + + L+++LD + DP N GAI+R+A AF DGII Sbjct: 61 QNIAFKLVKKSFQKTSLESFLKLIKKQENALILMLDEIEDPRNFGAIIRTANAFGVDGII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + S + ++ K++ GA+ +I I +SNL++A++ + + GF S + E+ Sbjct: 121 YKKYHQASINDLVIKTSMGAINYIHMIEVSNLSNAIKNLQNEGFWVYATSLLKSQSYEKV 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K I+G E KG+ P + A + M G +++LNV A + L Sbjct: 181 DYANKSVFIVGNESKGVSPLILKNADQSVRIDMFGDVQSLNVGVATGIIL 230 >gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 258 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ +++ + + L G H A L + +RKI + T++AL+ D+ Sbjct: 8 SKDNPKIKHLRGLIEQNTYRKKQGQTVLEGTHLSLAWL-HENRKIDSIFTTEHALSHPDF 66 Query: 84 DANLPHPFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + L + V +++ + LA+ T P + LD + ++L++V Sbjct: 67 EKILAKYTGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKAD---TLILENVQ 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRSA A + I+ TK + S + ++ GA + L L++ Sbjct: 124 DPGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGAHFTLQTFENIALEQILEQF 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 SS + L + ILG EG+G+ + A + PG ++ Sbjct: 184 Q---IPVYVTSSHRAESLYSKDLRKPCVWILGNEGQGVSDYAMQHA-EAVSIPQPGGQES 239 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A ++ + Sbjct: 240 LNVAIAGSICFFEMVRQR 257 >gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] Length = 226 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 4/225 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +Y V + N KI L K+ + ++ + F VK +P K+ K Sbjct: 1 MLIYAKQPVQYIIKNYPNKIRTLYLAKDVDKK-EYSELMKMNFEVKRIPADAAGKMC-KN 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A HQG+ E ++ + ++VL + D NIGAI+R+A A + I+ Sbjct: 59 ANHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + V+ ++++GAL +P+ N+ D + + + GF G + +IK + Sbjct: 119 KLNFEPVM-RTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQKR 177 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL+LG EG+GL + + + M +LNVS A A+ + Sbjct: 178 -ALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221 >gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 6/226 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGK 107 + +YG L + +I + K +L AN+ + + + + Sbjct: 1 MIIYGKQLFLHLLKHYPSRIKTVFLPKKCDTKLFSHIANVTQK--ICNIDERKAQALC-H 57 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E PL A++ L++LD V D NIGAI+RSA AF DG+I + Sbjct: 58 GGNHQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGM 117 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + A+L +++S A +P + + D L ++ GF G D +++ Sbjct: 118 KTCNLEAIL-RTSSAAAFELPIALVPSTKDMLNELKQIGFTLYGADMDG-VDVQKVTFAP 175 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K ALI+G+EGKGL PK +E ++ + M +LNVS AAA+ Sbjct: 176 KRALIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAILC 221 >gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] Length = 260 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H SA L+ + + T+ AL Sbjct: 2 KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V ++ +VL Sbjct: 61 HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S + + + +A + G EG G+ ++ AT + PG Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] Length = 260 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H SA L+ + + T+ AL Sbjct: 2 KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V ++ +VL Sbjct: 61 HAEAQAIVARIDMQRIVTLPDALFGQLSNVVNGVGFLLLVDRPTHPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S + + + +A + G EG G+ ++ AT + PG Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] Length = 265 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 7/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ +KSR + + G +S A+ +I LL + + + A Sbjct: 9 QNPLIKQLAQLKEKSRERKKSGLFLIEGKRELSLAIK-GGYEIKTLLFFPDLFSESEAKA 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVN 142 + + + + K+ ++ +G+ TL+A+ + L++V + Sbjct: 68 MSSYGIEIIEISKEVFQKLAHRDTT-EGVIAVVK-SKDHTLEALTLKSKNPLILVAEAPE 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIGAILR+A A S D +I S + + +S+ G + S+ DA+ + Sbjct: 126 KPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVGCVFTTEIAMASS-NDAILYL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + F +P + A+++G E GL ++ AT + M G+I + Sbjct: 185 QKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDS 244 Query: 263 LNVSNAAAVALYITQNHF 280 +NVS AA + ++ + Sbjct: 245 MNVSVAAGILIFEAKRQR 262 >gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] Length = 278 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 100/271 (36%), Gaps = 23/271 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-- 88 +++ +KSR + G+ V P+ + ++ ++ LA D Sbjct: 11 RQVCQLQKKSRIRRKEGLFVAEGLRMVCE---TPAELVREIYVSERFLAEHGEDRGYRDF 67 Query: 89 ----------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN- 131 V ++ + QG+ + + Sbjct: 68 LDSLEAGRNQNRKTQGGQTGPLEVSDPVMEYMSDT-VTPQGILAVVRQPAYQWEELLGGH 126 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LLM+L+++ DP N+G I R+A GI+ ++ S + +S G+L +P++ Sbjct: 127 KTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRVPWLI 186 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +L+ L++ G +K +Q ++G EG GLR T A + Sbjct: 187 TEDLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAALAEAR 246 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G +++LN + AA + +Y + Sbjct: 247 IRIPMGGRLESLNAAMAAGILMYEAARQRRR 277 >gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis RP62A] gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] Length = 246 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 24/267 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++S K++ ++ KK R + + G+H + A + I Sbjct: 2 EQITSAQNS---KIKNANKLKKK--------RERDKTGLALIEGIHLIEEAYQSQIEVIQ 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + + ++ D V + + + + G QG PT D Sbjct: 51 LFIVDPDRMSSSIVDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G++ HIP Sbjct: 103 QAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I D +H + G + ++ AL+LG EG+G+ P + T Sbjct: 162 I----FDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G ++LNV+ A ++ +Y Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244 >gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815] gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815] Length = 266 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK+++ + + + L G H SA L+ + + T+ AL Sbjct: 2 KAITSRDNPLYKRLKVLAGSTHQQRKSGHALLEGFHLASAYLDVAGQPETCV-VTEGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L P + V + +VL Sbjct: 61 HDEAQAIVARIDERRIVTLPDALFGQLSNVVNGVGMLLLVEKLDLPLPERVTHG--CVVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQIHEDIEAPTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +Q + S + + + + +A + G EG G+ ++ T + PG Sbjct: 179 IQLL---DVPVAITDSHGAEAIYETDLSGPVAWVFGNEGAGVSQPWRDAVTYRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens] gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Homo sapiens] gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens] gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [synthetic construct] Length = 353 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 28/253 (11%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103 L+G+ AL R + +LL A L PV Q +D Sbjct: 50 ELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + + VHQG+ +E +PL + QL +VLD + DP N GA+LRSA Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHF 168 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---- 212 D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228 Query: 213 ---SSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261 S + + + L+LG EG GL + Q + + + +P ++ Sbjct: 229 STEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288 Query: 262 ALNVSNAAAVALY 274 +LNVS AA + L+ Sbjct: 289 SLNVSVAAGILLH 301 >gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 297 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +++ + + AL+ + + L+ + Sbjct: 40 YARLTEAQLRNKLEPEKGVFIAESPKVIGTALDAGYKPLSFLMERRQIEGPAAGVLARCP 99 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V T ++ + G L P + RN++ + VL+ + D NIGA Sbjct: 100 DATVYTADRAVLESLTGYALTRGVLCAMHRPAPRTAEEVCRNARRVAVLEGIVDSTNIGA 159 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDA-LQKMHS 204 I RSA A D ++ + + + G + +P+ R+ + +A L ++H+ Sbjct: 160 IFRSAAALGMDAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGLARLHA 219 Query: 205 WGFQTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF T ++ D + P++ +K+A++LG EG GL +T + + M + Sbjct: 220 MGFTTAAMALDDRALPVDDPALQAAEKLAIVLGTEGDGLAAETIARCDATVMIPMQHGVD 279 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV AAAVA + + Sbjct: 280 SLNVGAAAAVAFWQLRAR 297 >gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 268 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 8/255 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ N + + G + A + LLA + D P Sbjct: 15 DYVQLREVNLRRLLEEEHGLFIAEGDKVIRRAADAGYEPRSFLLAPRWLDTLADVLEKWP 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPH 145 PV V + +++ G VH+G LD + + + D + D Sbjct: 75 EA-PVYLVSAELAEQVTGFH-VHRGALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDHT 132 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA R+A A D ++ + + K + G + +P+ R+++ AL ++ Sbjct: 133 NVGAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLREH 192 Query: 206 GFQTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF T + D L++ ++ K+ALI G EG GL P + M G + + Sbjct: 193 GFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVDS 252 Query: 263 LNVSNAAAVALYITQ 277 LNV+++AAVA Y T+ Sbjct: 253 LNVASSAAVAFYATR 267 >gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] Length = 339 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 12/269 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K K K+ A + + + +S+ L G + V AL P Sbjct: 54 PKKTKWKQEKERRAAAAEGRAPKAGRPKRPSTQSKRRDSDGVDVLVGRNPVVEALRAHVP 113 Query: 65 SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ + T+ + R + V +D++ + A+HQGL L+ P Sbjct: 114 GTALYVVNGTELDDRIRESIRLAGNRGISILEVSKSELDRLC-QGALHQGLGLQVPPFHY 172 Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 V LL+ LD V DP N+GA +RSA AF G++ +R + +A Sbjct: 173 EEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRSAAAFGAHGVVVPQRRAAGMTATA 232 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGA 235 ++++GA +P + +NLT A+Q+ G GL +D + L D + L++G+ Sbjct: 233 WRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLDADGEIDLFDLPAAVDPLMLVVGS 292 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALN 264 EG+GL E+ + + +++LN Sbjct: 293 EGRGLSRLVGESCDLRVRIPIASAVESLN 321 >gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] Length = 265 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 111/260 (42%), Gaps = 10/260 (3%) Query: 26 NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79 N +D +K++ KS++ ++ + G V AL + I + K Sbjct: 6 NSKDNEKLKYTKALLKSKNRNKESKFIIEGYRIVVLALECMANLDYVFINEDFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138 +L D + + + + ++V E QG+ + +++ + + +++L Sbjct: 66 KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+G I+R+A + + II K + + +S G++ + I S + Sbjct: 124 DRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNIINASQ-DET 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + S F + ++ ++ K+AL++G E G+ + + + + + G Sbjct: 183 VDMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LN + ++A+ +Y + Sbjct: 243 KAESLNAAISSAILMYEIKK 262 >gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 288 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 10/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 D++ + S +++ + P + GV + + + LD Sbjct: 30 DFRDLNSVDRRPDVPALPGGRVGKGLVIAEGVLVAQRMIASRFAP-HAFFGVDRRMGELD 88 Query: 83 WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 D P P + + +++G LA P+ +D + +++ + VL+ Sbjct: 89 ADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPVERTVVDVIEHARTVAVLEG 148 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 VND NIG+I R+A D ++ + + + G +P+ + + L Sbjct: 149 VNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKSQDWPGDLD 208 Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + GF T+ L+ + PL + K+A ++GAEG GL T A + M Sbjct: 209 VLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGLAEHTMRRCDVRARIPMSRG 268 Query: 260 IKALNVSNAAAVALYITQN 278 +LNV+ AAAVA Y Sbjct: 269 TDSLNVATAAAVAFYERAR 287 >gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 281 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 31/280 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75 +++ K + +K++ ++ G A P + Q+ ++ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62 Query: 76 --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L R + + + V K V QG+ Sbjct: 63 MQDCMESCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119 Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ Q L++L+ + DP N+G ++R+ G+I + + +S Sbjct: 120 EYALEEMLKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P+ +L + + ++ K A ++G EG GL Sbjct: 180 MGSIYRVPFFVTKDLPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKKKTAFLIGNEGNGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + A + + M G +++LN + +A++ +Y T Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] Length = 255 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 111/250 (44%), Gaps = 8/250 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 10 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N + V D++ E Q + + P+ P + + + ++LD++ DP Sbjct: 67 NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ +++ L + Sbjct: 124 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 182 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 183 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 242 Query: 265 VSNAAAVALY 274 + AA + +Y Sbjct: 243 AAVAAGIMIY 252 >gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032] gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter turicensis z3032] Length = 257 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 13 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 72 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L + ++ L+ V +PHN+GAI+RS Sbjct: 73 ELTKASGTE-HHGGVCFLIKKRSGASVEQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 131 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ S ES ++A G EH+ I + +DAL + + G+ + SS Sbjct: 132 HFGVKGVVVQDA-SLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 PL + K+ L+LG E +G+ TQ A + G +++LNVS A V L Sbjct: 191 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 250 Query: 274 YITQN 278 + QN Sbjct: 251 WWRQN 255 >gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 267 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 5/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 ++ + + + + G + V AA++ + + T+ A R V P Sbjct: 24 RAANRKKAKQFLIEGENAVDAAVSTGA--AVDVFVTEKAAERFGDIITACGYMGVYVHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 K + A GL P+L + L+ V ++P N G ++R++ A Sbjct: 82 TDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDA 141 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I S +A++++G+L H+P R N+ D L ++ G Q + ++D Sbjct: 142 MGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAADG 201 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L + + A + G E GL + E A + + G ++LN++ AA++ LY + Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYES 260 Query: 277 QN 278 Sbjct: 261 AK 262 >gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 290 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 104/268 (38%), Gaps = 20/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85 Y + ++R ++ AL + I L A D Sbjct: 17 YTNLTELQLRNRLEPSKGIFIAESPKVITRALAAGRQPISLLVEEPWIEGMADIFAFIDE 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + PV P+ + +I G LA L + N+ + VL+++ D Sbjct: 77 HWGDDIPVYVASPEQLRRITGYRLHRGALAAMHRWELPTVAEVCANATRIAVLENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDAL 199 N+GAI+RSA A D ++ T S + + G + +P+ RI L Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQGL 196 Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN---------DKIALILGAEGKGLRPKTQETAT 249 +++H GF T ++ SD L+ + DK+ALI G EG GL T A Sbjct: 197 EELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANAD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ ++AVA Y T+ Sbjct: 257 LTVKIPMSHDVDSLNVAASSAVAFYSTR 284 >gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] Length = 253 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 111/250 (44%), Gaps = 8/250 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 8 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N + V D++ E Q + + P+ P + + + ++LD++ DP Sbjct: 65 NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ +++ L + Sbjct: 122 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 180 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 181 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 240 Query: 265 VSNAAAVALY 274 + AA + +Y Sbjct: 241 AAVAAGIMIY 250 >gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo] gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo] Length = 246 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 117/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKTQNIKITKISINELDKIL-KNKDHRG 63 Query: 114 LALETA-----------PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ L+ + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKVEKNKNVKTQTKDFENLLETFKKKENVFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT+++S +++ + +++SGA +++ I ++N+ + + + GF + Sbjct: 124 LVITTQKHSAKDNSTVLRTSSGASQYVKKITVTNINNTINFLKKHGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ T++ + + + G I +LNVS +A + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLTKQNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] Length = 256 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 30/275 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K +EK ++K K R+ + G+ TV A Sbjct: 1 MAYIKSKDNEKFKTIKSL-----------------LASKKRYKEKK--YLAEGLRTVELA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALET 118 L + + I ++ + + LD V T+ D++ E QG + ++ Sbjct: 42 LEHGA-DIDMVILREGSEFDLDL-----KDLRVHTLSKDLYDQVSDTE-NSQGIMVVVKM 94 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L D R+ + ++VLD + DP N+G I+R+A A D I K + + + Sbjct: 95 RDLSKEDFDPSRHRK-VLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVR 153 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SA G+ ++ + + + L + G Q + S D+ ++ D AL+LG E Sbjct: 154 SAMGSGFYMDIL-LESQEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEAN 212 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ E + + + M G ++ NV+ +AA+ + Sbjct: 213 GINDFWIENSDLLVKIPMYGKAESFNVAISAALLM 247 >gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 285 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 9/248 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 ++ + E + G + V AA++ S + T+ A R V P Sbjct: 43 RAASRRKAERFLIEGENAVDAAVSTGSAT--DVFVTEKAAERFAHIVQTCGYMDVYVHPI 100 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLDHVNDPHNIGAILRSA 154 K + A GL P+L + L+ VL ++P N G ++R++ Sbjct: 101 TDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVL--TSEPGNAGTLIRTS 158 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DG+I +A++++G+L HIP R N+ D L K+ S G Q + ++ Sbjct: 159 DAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSSGMQVLATAA 218 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + L + + A + G E GL + + A + + G ++LN++ AA++ LY Sbjct: 219 DGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNLATAASICLY 277 Query: 275 ITQNHFAK 282 + + Sbjct: 278 ESVKQQNR 285 >gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 217 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 11/223 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AL + + ++ + D + H + I K + Q + Sbjct: 1 MEALKSDFEIEYIVMGEGVKIDIPKGDFEIAH-------TTERIFKKISDTVTPQMVMAI 53 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 ++ + ++ D++ DP N+G I+R+A AF I T + + Sbjct: 54 IKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVL 113 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +++ G++ HIP I ++ L K+ G + ++K + + +DK+A +LG E Sbjct: 114 RASMGSIFHIPVIATTS--QILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNEA 171 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 172 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 212 >gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 290 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 15/268 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K + QK ++ + + L G A + + T + + Sbjct: 21 SRQNAAVKNVIKLKQK-KNRDREKQFVLEGTKLFMEA-EAWKVEFTAVFVTPQWIEGAEE 78 Query: 84 DANLP------HPFPVKTVPPQTIDKIVGKEAVHQGLA------LETAPLLSPTLDAVRN 131 PV TV + + + L + Sbjct: 79 TVKSAFKRLKDTGIPVFTVDTSVFEAMSALKMPEGVLCTAHKIDASEKFFEKKCKKNGKK 138 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD V DP N+G I+R+A A DGII + + + + + + A G++ H+P ++ Sbjct: 139 CLSYVILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLPVLQ 198 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250 L + + G + IG S K L + K + +ILG E KG+ + Sbjct: 199 TGALEKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSMADLCDD 258 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M G ++LNVS AA + +Y Sbjct: 259 LYKLPMYGHAESLNVSVAAGILMYDIAR 286 >gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 246 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 24/267 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++S K++ ++ KK R + + G+H + A + I Sbjct: 2 EQITSAQNS---KIKNANKLKKK--------RERDKTGLALIEGIHLIEEAYQSQIEVIQ 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + + ++ D V + + + + G QG PT D Sbjct: 51 LFIVDPDRMSSSIVDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G++ HIP Sbjct: 103 QAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I D +H + G + ++ AL+LG EG+G+ P + T Sbjct: 162 I----FDDINNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G ++LNV+ A ++ +Y Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244 >gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 267 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 5/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 ++ + + + + G + V AA++ + + T+ A R V P Sbjct: 24 RAANRKKAKQFLIEGENAVDAAVSTGA--AVDVFVTEKAAERFGDIITACGYMGVYVHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 K + A GL P+L + L+ V ++P N G ++R++ A Sbjct: 82 TDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDA 141 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I S +A++++G+L H+P R N+ D L ++ G Q + ++D Sbjct: 142 MGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAADG 201 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L + + A + G E GL + E A + + G ++LN++ AA++ LY + Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYES 260 Query: 277 QN 278 Sbjct: 261 AK 262 >gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 264 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 99/257 (38%), Gaps = 3/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84 ++ K + ++S+ ++ + G + +I ++ ++ + + Sbjct: 6 SNSQIKNLIKLQKQSKVRNELKVFVCEGKKMFEEVASQQRNQIKKVYLAESYYHQYTKQN 65 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVND 143 + + Q + + + QG+ + D + L++L+ + D Sbjct: 66 PEYLKGLDFEVLSDQVMKE-ASETITPQGILAIVKQPIYTLKDMTSGDSIRLLLLEDIRD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A GI+ +K + + +S GA+ +P+ + L ++ Sbjct: 125 PGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQIK 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + ++ K A+++G E GL K +T + M G +++L Sbjct: 185 NEEIAIYAAHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESL 244 Query: 264 NVSNAAAVALYITQNHF 280 N + AAAV +Y + Sbjct: 245 NAAIAAAVLMYESYRQI 261 >gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 276 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G EG+GL + E A + M +LNV+ A+ +AL + F+K Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL----SRFSK 274 >gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 266 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 9/248 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 ++ + E + G + V AA++ S + T+ A R V P Sbjct: 24 RAASRRKAERFLIEGENAVDAAVSTGSAT--DVFVTEKAAERFAHIVQTCGYMDVYVHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLDHVNDPHNIGAILRSA 154 K + A GL P+L + L+ VL ++P N G ++R++ Sbjct: 82 TDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVL--TSEPGNAGTLIRTS 139 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DG+I +A++++G+L HIP R N+ D L K+ S G Q + ++ Sbjct: 140 DAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSSGMQVLATAA 199 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + L + + A + G E GL + + A + + G ++LN++ AA++ LY Sbjct: 200 DGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNLATAASICLY 258 Query: 275 ITQNHFAK 282 + + Sbjct: 259 ESVKQQNR 266 >gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1] Length = 259 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 104/280 (37%), Gaps = 27/280 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ ++++ + S++ H+ K R+ H L L G H + AL Sbjct: 2 IITSRQNQLVRSIRKLHHRKYRQGH---------------------LLLEGTHLIQEALA 40 Query: 63 NPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + W L V + + + G+ Sbjct: 41 SGYHLSVVCYTSAWQAKQSPTFWQRLLHRSDRAVEVSEEVLAALC-TTTTPDGVVAVA-- 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + L + L + DP N+G I+R+A A +G++ + + +++ Sbjct: 98 -DYTPLPTLPLQSLGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRAS 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P +++ L+ + G+Q + + Q L++G EG+GL Sbjct: 157 AGQWFRLPMQTVTDGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGL 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 P Q+ + + + +++LNV+ A AV LY Sbjct: 217 PPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQR 256 >gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568] gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568] Length = 366 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 122 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 181 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+GAI+RS Sbjct: 182 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLKEAPAKDCVLALEEVGNPHNLGAIVRSCA 240 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + ES ++A G EHI I + L G+ + SS Sbjct: 241 HFGVNGVLLQDP-AVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSH 299 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 PL Q K+ L+LG E GL + + G +++LNVS A + L Sbjct: 300 KGTPLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLAD 359 Query: 274 YITQNH 279 + QN Sbjct: 360 WWRQNQ 365 >gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 17/258 (6%) Query: 39 KSRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPV 93 K+ T P + F+ YG V AL+NP I +LL NA + V Sbjct: 2 KTNQTKHPRDKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------DAVRNSQLLMVLDHV 141 P+ I +I QG+ ++ P L + + + LD V Sbjct: 62 SRESPKYITRISRNGRHDQGVVVDVIPPAMEALSTYLERQQSHPPNQKPQTHKFLALDGV 121 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 +P N+G I+R+ +A DGII ++ P + ++ K+++G + +R + L+DALQ+ Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDALQQ 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + GLS + L + +LG E +G+ + + + + Sbjct: 182 LRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEFPAE 241 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV++AAAV + + Sbjct: 242 SLNVASAAAVVCFELKRQ 259 >gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 266 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 118/263 (44%), Gaps = 14/263 (5%) Query: 21 AKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNA 77 + R +K++ + + + + + G+ TV+ N P + L + Sbjct: 2 KQQEREPLSKEKLRKYTRLHQKKQREREGLFLAEGLRTVTELCRNLPDNDMLVALLIRET 61 Query: 78 LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQ 133 + D+ H F V ++ + ++ + QG+ P P + + + Sbjct: 62 QSD---DSGFAHAFSGKVFSISDKECLQLA-QTTTSQGVFGVFRQQPDPEPFGEGKKGAS 117 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VLD V DP N+G ILR+AV F DG+I + +A +S++G++ IP+ + Sbjct: 118 FIVVLDDVQDPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGVE 177 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ D L ++ + G+ I S + K E + +K L++G E G+ + Q + + Sbjct: 178 HVADELNRLKALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLVR 237 Query: 254 LHMPGI---IKALNVSNAAAVAL 273 + G +++LN S +AA+ + Sbjct: 238 IPHAGKKARVESLNASVSAAILI 260 >gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 283 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 32/288 (11%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP------ 64 + S++ +RR + ++F Q+ R G V AL Sbjct: 5 EFTSIRSPRIKGVRRLAK-----RTFRQRERR------FLAEGPQAVREALAAAVDGAQG 53 Query: 65 -------SRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 + + ++ AT A+ R DA P V + ++ + QG+ Sbjct: 54 RSPHGGAASGVVEVYATAEAMQRHIDLVDAARAVDVPTHRVSLDVMSELA-QTVTPQGVI 112 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + L+ V + +L VL HV DP N G +LR+A A D +I T + Sbjct: 113 A-VCEFVDVPLERVGDVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGK 171 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIAL 231 ++++G+L H+P + + A+ + G + ++ L + + Sbjct: 172 CVRASAGSLFHLPVVVGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGW 231 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +T + + G ++LN++ AAAV LY T Sbjct: 232 VFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLYTTARQ 279 >gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 255 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P D + + LL+ LD+++DP N+GAI+RS AF G Sbjct: 4 NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175 >gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 14/238 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEA 109 G V+ A+ + ++ AT+ AL+R F V V + + + Sbjct: 3 EGPQAVAEAVRAGG--VTEVFATEAALSRHTGLLAEAESFGARVFAVADSGLAALT--DT 58 Query: 110 VH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VH QG+ + + + VR L +VLD + DP N G ILR+A A ++ Sbjct: 59 VHPQGIVAVCGYVDTTLPETVR---LAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGS 115 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND- 227 + +++ G+L H+P +R + + L + + G + + + L+ I + Sbjct: 116 VDPYNGKCVRASVGSLFHLPVVRGGDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGL 175 Query: 228 ---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + G+E GL E A + + G ++LN++ AAAV LY + K Sbjct: 176 LRQPTAWLFGSEAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLYASAREHRK 233 >gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] Length = 253 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 114/269 (42%), Gaps = 18/269 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S +S +++KK+ + + + L G+H V AL +K+ + Sbjct: 2 EITSTSNSRV-------KEWKKLNTKKGRKKQNK----YILDGLHLVKEALKAN-KKVEE 49 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LL T + L+ + +P V + + + K + + QG+ + + Sbjct: 50 LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++LD V DP NIG ++R+A A G+I + + + + ++ G+ HI I Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL+ ++ G + + ++ AL++G EG G+ + E + Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTS 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + ++LNV+ AA + ++ + Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253 >gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018] gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018] gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 229 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 5/232 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG V L N + + ++ +K +L + L + + Q + K Sbjct: 1 MIIYGKQIVLYVLENHPKLVEEVFLSKEIDNKL-FSKFLKLGKKIHRLDNQKAQALA-KG 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG L+ + + ++ ++VLD V D NIGAI R+A + DGII + Sbjct: 59 GNHQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKN 226 + + S ++ ++++GAL +P+ D ++ GF IG + D + K+ Sbjct: 119 TINNSGIV-RTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIEKS 177 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 DK+AL LG+EG+G+ PK + + M +LNVS AA + +Y + Sbjct: 178 DKVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229 >gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 285 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 19/281 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF 69 I + D +L D++ ++ + + + G V L + P R + Sbjct: 3 ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLV 58 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128 A + A+L ++ +T+ ++ G + +H+GL L + Sbjct: 59 GFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELGLSEV 117 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++VL+ V D NIG+I R+A D I+ + + + G + +P Sbjct: 118 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 177 Query: 189 YI----RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKND------KIALILGAEG 237 + + +N L ++ GFQ + L+ PL+Q + + KIAL++GAEG Sbjct: 178 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 237 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL +T A + M +LNV+ AAA+ALY Q Sbjct: 238 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 278 >gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++G + + AL R + ++ ++ R ++ V Q ++++ G Sbjct: 3 DFVVWGRNPIIEALR-AGRDVEKIYVAHDSHPPRELIRLAKEKGVKLQKVSRQKVEELAG 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + QG+ +P+ + ++ + +V DH+ DP N+G +LR+ G Sbjct: 62 TKKT-QGVVALLSPVSYVAPQELFSETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + S + + K++SGA+ H+ +++NL L++ G + K E Sbjct: 121 ALIPRERSSPMNQTVVKASSGAIFHLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRE 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EI AL+LG+E KG+ E + + + M G +LNV +A A+A++ Sbjct: 181 LEIVL-PCALVLGSEDKGVSKSLLEVSDEVLSIPMKGKTTSLNVGSAGAIAMWEAVRKL 238 >gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 357 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 26/286 (9%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +S+ + E SLK H +++ D ++++ + E +YG + A N Sbjct: 85 VSRPEEE---SLKPDHGGISGKSYIDPEQLR--------RQRLEETRIYGENACLAMFQN 133 Query: 64 PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 I + ++ R L W A + V V Q + K G E H G+ Sbjct: 134 RPDAIVRAWFVQSVTPRFRNALKWMAANRKAYHV--VDDQELAKASGTE-HHGGVCFLIK 190 Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + L ++ L++V +PHN+GAI+RS F G++ + + ES Sbjct: 191 KRNGLGVETYLQQAPAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVVL-QDTAMLESGA 249 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234 ++A G EHI I TD L K + G+ + SS L Q +K+ L+LG Sbjct: 250 AVRTAEGGAEHIKGIDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVLVLG 309 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 E GL E + G +++LNVS A + L + QN Sbjct: 310 QESDGLSDSIWEDGDIRLSIGGTGRVESLNVSVATGILLAEWWRQN 355 >gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] Length = 308 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 19/281 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF 69 I + D +L D++ ++ + + + G V L + P R + Sbjct: 26 ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLV 81 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128 A + A+L ++ +T+ ++ G + +H+GL +L + Sbjct: 82 GFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELSLSEV 140 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++VL+ V D NIG+I R+A D I+ + + + G + +P Sbjct: 141 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 200 Query: 189 YI----RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKND------KIALILGAEG 237 + + +N L ++ GFQ + L+ PL+Q + + KIAL++GAEG Sbjct: 201 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 260 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL +T A + M +LNV+ AAA+ALY Q Sbjct: 261 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 301 >gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] Length = 246 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 115/241 (47%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + ++ + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKAQNIKIRRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFEHLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ I ++N+ + + + GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTINFLKKNGFWIYAGDVKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EG+G+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDRKIALILGNEGRGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD] gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD] Length = 260 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H A L+ + + AT+ ALA Sbjct: 2 KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L + P + V ++ +VL Sbjct: 61 HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ ++ AT + PG Sbjct: 179 AARL---DVPVALTDSHGAQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281 +++LNV+ AAAV L+ Q A Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260 >gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Monodelphis domestica] Length = 425 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 35/267 (13%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPP 98 S P L+G+ + AL R + +LL K A + DA PV+ + Sbjct: 115 SAPRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAE-ALGIPVQLMRR 173 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---------QLLMVLDHVNDPHNIGA 149 + +D + + +HQGL +E APLL R + +L ++L+ + DP N+GA Sbjct: 174 RELDALC-RGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGA 232 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 +LRSA D +IT++R S + V++K+++G +E + +L L+ G+ Sbjct: 233 VLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLV 292 Query: 210 IGLSSDSKKPLEQE-----------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 G + Q + + L+LG EG GL + + + + +PG Sbjct: 293 AGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTI-LPG 351 Query: 259 I-----IKALNVSNAAAVALY--ITQN 278 +++LNVS AA + L+ I+Q Sbjct: 352 RELPPEVESLNVSVAAGILLHSIISQR 378 >gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49] Length = 260 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + H + L G H SA L+ + + AT+ ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V S +VL Sbjct: 61 HAEAQAIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPERVTQSS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + DA Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDV-APDA 177 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L S + + + +A + G EG G+ ++ A + PG Sbjct: 178 LAA--RLDVPVALTDSHGAQAIYDCDLSGPVAWVFGNEGAGVSAFWRDAAAHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 268 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 14 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKEDLA-G 71 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V P + ++VG LA + + V ++ + VL+ VND N+ Sbjct: 72 VGAPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLS 131 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A +I + + + G +PY R ++ L + GF+ Sbjct: 132 SIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 191 Query: 209 TIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + + +AL++GAEG GL + + M +LN Sbjct: 192 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 251 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 252 VATAAALAFYERAR 265 >gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 100/288 (34%), Gaps = 31/288 (10%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +++ ++E++ + + H K R + + G V L Sbjct: 1 MLTSLQNEQVKYVVNLHKRKFREEN-------------------GEFLIEGWRFVEEGLA 41 Query: 63 NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + K+F KN +A PV V + + K+ E QG+ Sbjct: 42 RGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTE-NPQGILAVVKQ 100 Query: 121 LLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 D + +L++LD V DP N G ILR+A+A + T+ Sbjct: 101 SRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLY 160 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + +S GA+ + + + L+ S + L + +AL+ Sbjct: 161 NLKVLRSTMGAIFSLNIVTHCQPEEILKVCRSHKIPVFVGDVEG-TDLYETHFAQPMALV 219 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G EG G Q + M +++LNV+ A + LY + Sbjct: 220 VGNEGNGPSAAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRM 267 >gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX] gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX] Length = 268 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 7/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ N + ++ G V AL + LL + D Sbjct: 16 DYVRLRDTNLRRSLEAKHGLFLAEGEKVVRRALRAGYQPRSLLLTRRRRRVLDDVLDTF- 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147 PV V +++VG +H+G+ PT+ + V +++ ++VL+ + D N+ Sbjct: 75 -QAPVYVVDDAVAEQLVGFH-IHRGILASFHRKPLPTVPEVVASARRIVVLEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA D + R + K + GA+ +PY R+++ L+ + GF Sbjct: 133 GAIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGF 192 Query: 208 QTIGLSSDS-KKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264 + L+ + PL + + ++ K AL+ G+EG GL + + A A + M + +LN Sbjct: 193 TLVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLN 252 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 253 VTAAAAIACYELMR 266 >gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 246 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 24/265 (9%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++ ++++ ++ KK R + + GVH + A + I Sbjct: 2 EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL A + ARLD + + V + + + + G QG + Sbjct: 50 QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +Q ++++D V DP N+G ++R+A A D +I K + + +++ G++ H+P Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + +L + + + G + ++ ++ D AL+LG EG+G+ P+ T Sbjct: 162 MTL-DLDTFITQFNG---PVYGTALENAVAYKEVTSIDSFALLLGNEGEGVNPELLAHTT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G ++LNV+ A ++ LY Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242 >gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 273 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 12/259 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ + ++ G + A+ + +L ++ L L D Sbjct: 17 DYTRLRDVQLRKSLEAEHGLFIAEGEKVIRRAVRAGY-PVRSVLTSRRWLEPLS-DLLEG 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV + ++ + G VH+G LA L + + ++ ++VL+ + D N+ Sbjct: 75 VQAPVYLADERVLEGVAGF-PVHRGALAAMARTPLPSVPELIAAARRVLVLEDLVDHGNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R A A D ++ + R + K + GA+ IPY R+ + L + + GF Sbjct: 134 GAIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGF 193 Query: 208 QTIGLSSD-SKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GI 259 + + L+ D S P+++ + +++AL+LG+EG GL + + A + M Sbjct: 194 RLLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRG 253 Query: 260 IKALNVSNAAAVALYITQN 278 + +LNV AA++A Y Sbjct: 254 VDSLNVVAAASIACYGLMR 272 >gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] Length = 267 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 4/246 (1%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 +S + + G ++V AA++ + + T+ A + V P Sbjct: 24 RSSARKKANAFIVEGDNSVDAAVSTGAAT--DVFVTERAADKFADIVTAAGYMDVYVHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 K + G+ P+L + LL V ++P N G ++R++ A Sbjct: 82 TDRAAKSLSDTQTTMGIFALCTPVLWSAGKILNGKPKLLSVPVETSEPGNAGTLIRTSDA 141 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I + ++++++G+L HIP R +N+ D L K+ + Q + + Sbjct: 142 MGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARDTNIKDVLGKLRASNLQILATAPQG 201 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L++ A + G E GL + + A + + G ++LN++ AA++ LY + Sbjct: 202 DATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRVSIPLRGRAESLNLATAASICLYES 261 Query: 277 QNHFAK 282 K Sbjct: 262 AKAQNK 267 >gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 4/252 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ + + ++ AL R +L + L ++ Sbjct: 16 DYSRLTDVALRRVSEPEGGLYIAESTKVITRALAAGHRP-RSVLLQEQWLPDVEPLLAPF 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + ++ G LA P L +D +R ++ ++VL+ + D N+G Sbjct: 75 PEAPVFVGEAAALQRLTGYHLHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RS D ++ + R + + + G + +P+ RI +A + GF+ Sbjct: 135 AIFRSVAGLGADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGFE 194 Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ D L++ +++A++LG+EG GL + A + + M + +LNV Sbjct: 195 IAALALADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLNV 254 Query: 266 SNAAAVALYITQ 277 ++A+AVAL+ + Sbjct: 255 ASASAVALWALR 266 >gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] Length = 260 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H SA L+ + + T+ AL Sbjct: 2 KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L + P V S +VL Sbjct: 61 HAEAQAIVARVDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPVQPLPARVTQSS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAGAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S + + + +A + G EG G+ ++ AT + PG Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281 +++LNV+ AAAV L+ Q A Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260 >gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 225 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 13/234 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + ++G +TV AL K+ + + +T P+ + GKE Sbjct: 1 MIIHGRNTVEEALKLGIVKLLFVKVNSTFDTS-------KYDVETRTYGPKEFEHYYGKE 53 Query: 109 AVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 A QG+A E +L D + +++LD + DP N GAI+R+A F I+ Sbjct: 54 A--QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILV 111 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 ++ + K++SG + + + N AL+K+ G+ + K L+ Sbjct: 112 GLDRQAPITSAVCKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDVE 171 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K +I+G+EGKG+RP +TA + M G I +LNVS +AAV LY N Sbjct: 172 FAEKSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEYAN 225 >gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 272 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 9/241 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A + LL+ K A D LP Sbjct: 17 DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYTMRSMLLSAKWVDALRDVIDELP 76 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV TV P+ +++ G VH+G + PL T D +R ++ +++++ VND N Sbjct: 77 --APVYTVTPELAERVTGYH-VHRGALASMQRKPLP-ATADLLRTARRVVIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAG 192 Query: 207 FQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + L+ D K + L++ + D++AL+LGAEG GL + A + M + +L Sbjct: 193 FTLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72] Length = 263 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 27/274 (9%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ K + +R + G H + AAL+ + +L+ +++ A Sbjct: 2 KSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGW-PLKRLVVSESGYA 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----------LDA 128 R + + L T+P +D L +P+ +PT A Sbjct: 61 RAEIRSLLERA--PATIPALKLDDS---------LVAHVSPVDTPTGILAVADIPPAAPA 109 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L+VLD V DP N+G ILR+A A + ++ T + S ++ GA H+ Sbjct: 110 PAAGASLVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLR 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++L L + + D+ K L + +A + GAEG+GL + Sbjct: 170 IHECTDLAGLLATYPGA---VLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKAL 226 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AT + M I++LNV+ AAAV L+ + A Sbjct: 227 ATGTVLIPMAAGIESLNVAAAAAVCLFEQRRQRA 260 >gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] Length = 247 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 31/270 (11%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++ +++ + K ++ + + G H + AL Sbjct: 6 EKISSLQNAKI-------KNWTLLH----KKKYRDETGLFLVEGEHLIGEALAA------ 48 Query: 70 QLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 NA+ + D P F + V P + K+ + A LD Sbjct: 49 ------NAVETIVTDTTSPFDFEHIVEVTPAIMAKLSENVSN----VHYIAVCRQRKLDI 98 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++LL+ LD + DP N+G ++R+A++F DG+ + + +S GAL HIP Sbjct: 99 TKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALFHIP 157 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +R + + + + S G + I S + + + +A ++G EG+G+ A Sbjct: 158 VVR-KDFSTLIPALQSQGVKVIATSLQESTTMGEIPVTECMAFVMGNEGQGVHQDIIAQA 216 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + M G ++LNV+ A + +Y ++ Sbjct: 217 DFRVRIEMEG-FESLNVAVAGGIIMYHYRS 245 >gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 267 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 5/252 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D+ + + R + ++ AL +L + L + Sbjct: 16 DFANLTDVALRRRTEPEGGLYIAESSKVIARALRAGHVP-RAVLVLEQWLDDVAELLG-D 73 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + ++++ G LA P L + +++++ +++L+ + D N+G Sbjct: 74 SDAPVYVGESELLEQLTGFNLHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTNVG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ RSA A D ++ T R + + + G + +P+ RI N + + GF Sbjct: 134 AVFRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAGFH 193 Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ D L+ +++ALILG EG GL +T E A S+ + M + +LNV Sbjct: 194 LAALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSLNV 253 Query: 266 SNAAAVALYITQ 277 + A+AV +Y + Sbjct: 254 AAASAVGMYTLR 265 >gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 253 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 18/269 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S +S +++KK+ + + R L G+H V AL ++K+ + Sbjct: 2 EITSTSNSRV-------KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-VNKKVEE 49 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 LL T + L+ + +P V + + + K + + QG+ + + Sbjct: 50 LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++LD V DP NIG ++R+A A G+I + + + + ++ G HI I Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVI 166 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 NL+ ++ G + + ++ AL++G EG G+ + E + Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTS 225 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + ++LNV+ AA + ++ + Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253 >gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 290 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 108/270 (40%), Gaps = 23/270 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ +S+ + + + A+ L ++ L L Sbjct: 18 DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76 Query: 89 ------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135 P+ ++++ G +H+G + P+LD + ++ + Sbjct: 77 TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPSLDELLATAHGGTPARRV 135 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+++ D N+GA RSA A D ++ T + + + + G + IP+ R+ + Sbjct: 136 VVLENLVDHTNVGAAFRSATALGVDAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSW 195 Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQET 247 + + GF L+ SD L+ ++A+++G EG GL +T Sbjct: 196 PGDITALQEAGFTVASLALSDDSVSLDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAA 255 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M + +LNV+ A+AV + T+ Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A] gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A] Length = 260 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 5/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA 85 + K+++ + + + F G H + A + L K + W+ Sbjct: 7 NPLIKQIREL-RNVKKRREKGIFFFEGTHLLMTACEENCSLLTLLFTEKWKIENFKLWEI 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +TV P+ + I G+ L P A + +L ++L+ + DP Sbjct: 66 ASRLTKRYETVSPEVLKSIT-TTVNPDGVI--VTALSRPFDKAKTDIKLGLILERLQDPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+AVA + DGI + +++ + ++++GA P + SNL D + + Sbjct: 123 NLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQ 182 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + ++KK ++LG EG GL + A + + I++LNV Sbjct: 183 GVNVVATLPNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNV 242 Query: 266 SNAAAVALYITQNHF 280 + A+ LY + Sbjct: 243 AVTGALILYEAKRQR 257 >gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184] gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184] Length = 260 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H SA L+ + + T+ AL Sbjct: 2 KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V ++ +VL Sbjct: 61 LAEAQAIVARIDAQRIVTLPNALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S + + + +A + G EG G+ ++ AT + PG Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] Length = 246 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYAGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+GA++RS Sbjct: 177 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGTDDCVLALEDVGNPHNLGAMMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I ++ DA+++ G+ + SS Sbjct: 236 HFGVKGVLLQDA-ALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQFRKAGYSIVTTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 + PL + K+ L+LG E GL +A + G +++LNVS A V L Sbjct: 295 AGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVESLNVSVATGVLLAE 354 Query: 274 YITQN 278 + QN Sbjct: 355 WWRQN 359 >gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] Length = 260 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + + L G H A L+ + + AT+ ALA Sbjct: 2 KSITSRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V ++ +VL Sbjct: 61 HAEAQAIIARIDAQRVVTLPDALFGQLSNVVNGVGFLLLVERPAQPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ ++ AT + PG Sbjct: 179 AGRL---DVPVALTDSHGAQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281 +++LNV+ AAAV L+ Q A Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260 >gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis EAS054] Length = 197 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +HQG+AL+ P D + + LL+ LD+++DP N+GAI+RS AF G Sbjct: 4 NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175 >gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] Length = 260 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + H + L G H +A L+ + + AT+ ALA Sbjct: 2 KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L + P + V ++ +VL Sbjct: 61 HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ ++ AT + PG Sbjct: 179 AARL---DVPVALTDSHGAQAVFDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001] gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001] Length = 262 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 11/263 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ R + T+ ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRP-DMCIVTEGALA 60 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLM 136 + A + + T+P ++ VH G+ L L +P D V + + Sbjct: 61 HDEAQAIVSRIEDHLIVTLPDALFGQLS--NVVHGVGMLLLVEKLSAPLPDTVEET--CI 116 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD V D N+G+ILRSA A + + + S+ + +S GA + + Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAA 176 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + ++ + S + +++ + ++A + G EG G+ ++ + + Sbjct: 177 ALIGRLA---VPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQ 233 Query: 257 PGIIKALNVSNAAAVALYITQNH 279 PG +++LNV+ AAAV ++ Sbjct: 234 PGGMESLNVAAAAAVCMFEQCRQ 256 >gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 239 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 12/230 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + H Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60 Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 Q +A L L++ + + L+++LD + DP N GAI+R+A AF D II Sbjct: 61 QNIAFKLVKKNFQKTGLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S +P E+ Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKV 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K I+G E KG+ P + A + M G +++LNV A + L Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 253 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 15/242 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQ-----LLATKNALARLDWDA--NLPHPFPVKTVPP 98 + +++G T+ K L +N + LP V + Sbjct: 6 TRSEYIFGKRTLIELTEAHIGKEHSFPFTDLYVKENPGTDIVEKILNRLPSFVKVHRISG 65 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 +D +V HQG+ +P D +VLD + DP N+G IL Sbjct: 66 SKLDSLV-PGRNHQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVLDRIQDPGNLGNIL 124 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A F II +R S + V+ K +SGAL + + NL + L+ + G+ + Sbjct: 125 RTAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANTLELLKENGYWIVS 184 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + + + ++A+++G EG+G++ E + + + + G + +LNV+ A + Sbjct: 185 TSDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGI 244 Query: 272 AL 273 L Sbjct: 245 VL 246 >gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163] gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 383 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L + ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGENDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + L + G+ + SS Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRHAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 274 YITQNH 279 + QN Sbjct: 377 WWRQNQ 382 >gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +Y ++ + KI +L K + ++ + F +K +PP K+ K Sbjct: 1 MLIYAKQPINYIIQKHPTKIKKLYLAKEMDKK-EYSQLMKIGFEIKRIPPDAAGKMC-KN 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A HQG+ E + N + ++VL V D NIGAI+R+A A DG+I Sbjct: 59 ASHQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAIIRTAYALGVDGVIACGVK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S A++ ++++GAL +P+ N+ D L + GF + G + K Sbjct: 119 SLPIEAIV-RTSTGALFDMPFAIEQNVLDVLNDLKMSGFTSYGADM-GATDIRDVKIKQK 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+EG+GL + + + M +LNVS A A+ + Sbjct: 177 RALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAGAILM 221 >gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] Length = 282 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 K+ + G ++V AA+ + L T+ A + + V T P Sbjct: 34 KTAQRKKTHQFLAEGENSVEAAIATGAAT--DLFVTEQAAEKFEEIVRTAGYMNVYTHPI 91 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156 K + G+ +L AV S+L+ V +P N G ++R A A Sbjct: 92 TDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPGNAGTLIRVADA 151 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + + ++++G+L H+P R N+ D L ++ S G Q + ++D Sbjct: 152 VGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQGLQILATAADG 211 Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ E+ + A + G E GL + A + + G ++LN++ AA++ LY Sbjct: 212 EVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLY 271 Query: 275 IT 276 + Sbjct: 272 ES 273 >gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 270 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S + AL+ + L K+ + P Sbjct: 20 LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + G L P L + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ + + + + +L ++ GF+T+ + Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTVAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D ++ + K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] Length = 218 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 111/190 (58%), Gaps = 4/190 (2%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDP 144 +K V P I+ ++ + HQG+AL+ + + S T++ V + S +++LD V D Sbjct: 17 KNINLKQVNPNYINSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDI 76 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+I+RSAV F+ D II SPSE+ ++K++SGA++ IP + + N+ + ++ + Sbjct: 77 HNVGSIIRSAVCFNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKK 136 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ G + + L + + K +I G+E KG+R T+E + + + I +LN Sbjct: 137 AGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLN 196 Query: 265 VSNAAAVALY 274 VSNAAAVALY Sbjct: 197 VSNAAAVALY 206 >gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1] Length = 263 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 116/254 (45%), Gaps = 12/254 (4%) Query: 34 QSFNQKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDAN 86 Q F+Q S + + F +YG + V AL +P I +L +K L+ Sbjct: 10 QRFHQDSDEYLKKKAFFDKVLTIYGRNAVLEALEDPDITIHKLHLSKSNKDAPVLEQMKK 69 Query: 87 LP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAVRNS--QLLMVLDHV 141 + V+ ++ +I QG+AL+ D + + ++ LD V Sbjct: 70 IASKRGIEVQYHDKASLSRISKNAKQDQGVALDIVLEHFGDEKDFISKNINYRIIALDGV 129 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 +P N+G I+RS A + D I+ + + S ++ K++ G L + I+ SNL + L+ Sbjct: 130 TNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSNLKETLKH 189 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G LSS + K +++I ++K +LG E +G+ P ++ + + M ++ Sbjct: 190 FRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAIPMQRGVE 249 Query: 262 ALNVSNAAAVALYI 275 +LNV+ A++ ++ Sbjct: 250 SLNVAVTASLLAFL 263 >gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 252 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + G + V AAL + ++ AT++A R PV V Sbjct: 9 RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +A+ T P + T L+ V +++P N G ++R A A Sbjct: 64 KAAKALSDTVTPVGLVAVCTLPEVDLTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + ++++G++ IP I + D + ++ G Q + Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADVVTQLKDAGLQVLATVLGGSV 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++ + A + G E GL + AT+ + M G ++LNV++AAA+ LY Sbjct: 184 SLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVEIPMTGGAESLNVASAAAICLY 239 >gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314] gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314] Length = 272 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 K+ + G ++V AA+ + L T+ A + + V T P Sbjct: 24 KTAQRKKTHQFLAEGENSVEAAIATGAAT--DLFVTEQAAEKFEEIVRTAGYMNVYTHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156 K + G+ +L AV S+L+ V +P N G ++R A A Sbjct: 82 TDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPGNAGTLIRVADA 141 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + + ++++G+L H+P R N+ D L ++ S G Q + ++D Sbjct: 142 VGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQGLQILATAADG 201 Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ E+ + A + G E GL + A + + G ++LN++ AA++ LY Sbjct: 202 EVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLY 261 Query: 275 IT 276 + Sbjct: 262 ES 263 >gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301] gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301] Length = 261 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 103/261 (39%), Gaps = 12/261 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + R++ +K+++ SR L GVH + A + + ++ + Sbjct: 7 ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P +P ++ A G+ P L A + ++L+ + Sbjct: 67 GLIQTLTEIPTIMLPTLMFAELT-PVASATGILALVK---IPQLTAPEQPKFALMLEDIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G++LR+A A + + + + + S + GA +P + +NL + ++ Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANL---IAEL 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PG 258 ++ + + + L + A ++G EG GLR +T A + M G Sbjct: 180 DNFNGNSYATAMHGE-SLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LN AAA+ L+ + Sbjct: 239 SVESLNAGAAAAICLFERKRQ 259 >gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061] gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061] Length = 247 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 101/264 (38%), Gaps = 31/264 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ I K H K R ++ + G+H V A Sbjct: 1 MKYIESAKNTNIKQWKKLHTKKER-------------------TKTGLFLVEGIHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + +L+ T + +++ + + + + E A+ P Sbjct: 42 LKSGA--VKELMVT----SPDKLPSHIDPDIELYELSEEAFSAMTETETPQHIAAVCAVP 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L++LD V DP N+G ++R+A A D +I + + +SA Sbjct: 96 VFEE-----KKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSA 150 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ + L + G G + ++ K ALI+G EG G+ Sbjct: 151 QGSHFHLPILKQT-LQQTIPVCKEQGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALN 264 P+ + ++ M G ++LN Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLN 233 >gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + L + S G+ + SS Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRSAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 274 YITQNH 279 + QN Sbjct: 377 WWRQNQ 382 >gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] Length = 290 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 105/269 (39%), Gaps = 21/269 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ +S+ + + + A+ L ++ L L Sbjct: 18 DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76 Query: 89 ------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLM 136 P+ ++++ G LA P+L D + ++ ++ Sbjct: 77 TGGPDGADVPIFVADEDVLEQMTGFHLHRGALAAMQRPVLPTLADLLATARGGAPARRVV 136 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+++ D N+GA RSA A D ++ T + + + + G + +P+ R+ + Sbjct: 137 VLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESWP 196 Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQETA 248 + + GF L+ SD L+ + ++A+++G EG GL T + Sbjct: 197 GDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDARLAMVMGTEGDGLGRHTIAAS 256 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AV + T+ Sbjct: 257 DYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 285 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 112/281 (39%), Gaps = 23/281 (8%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + D H +L DY ++ + + ++ + A+ R +LA Sbjct: 5 ITDIHDDRLS----DYVRLTDVALRKKLETENGLYMAESSKVIQRAIAAGHRP-RSVLAD 59 Query: 75 KNALARLDWDANLPHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---T 125 + LA L PV + + +I G +A P L+ Sbjct: 60 ERWLADLAPSLTKAGGDGEGGDIPVYVCDEEKLQEIAGFHLHRGAIAAMNRPALADPRAM 119 Query: 126 LDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L+AV ++VL+++ D N+GAI RSA A D + T + + + G + Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE-------IKNDKIALILGAE 236 +P+ RI + + + G+ T L+ D L+ K+ KIA+ILGAE Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAE 239 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GLR T + M G + +LNV+ A AVA + + Sbjct: 240 GDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280 >gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 382 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 90/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 138 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 197 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L ++ L+ V +PHN+G I+RS Sbjct: 198 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTADEHDCVLALEDVGNPHNLGGIMRSCA 256 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F GI+ + ES ++A G EH+ I + L + G+ + SS Sbjct: 257 HFGVKGILVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRRAGYTIVTTSSH 315 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 316 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 375 Query: 274 YITQNH 279 + QN Sbjct: 376 WWRQNQ 381 >gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix jacchus] Length = 350 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 124/302 (41%), Gaps = 29/302 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M L+S + L H+A RR R S L+G+ Sbjct: 1 MGLLSTIRGATWGRLVTRHFAHAARRGERPGGDELSRLLLDDLVPTSRQELLFGLSPCLL 60 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL R + +LL A + PV Q +D + + VHQG+ Sbjct: 61 ALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRRQKLDAMCRYQ-VHQGV 119 Query: 115 ALETAPLLS-PTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +E +PL P ++A S L +VLD + DP N GA+LR A D IIT+++ Sbjct: 120 CMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRCAHFLGVDKIITSRK 179 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------DSKKP 219 S + V++K+++GA+E + +LT LQ G+ G SK P Sbjct: 180 NSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPGPKVPQSSKIP 239 Query: 220 LE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVA 272 + + + + L+LG EG GL + Q + + + +P ++LNVS A + Sbjct: 240 ITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGFESLNVSVVAGIL 299 Query: 273 LY 274 L+ Sbjct: 300 LH 301 >gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEED 198 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTAGEQDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + L + + G+ + SS Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 274 YITQNH 279 + QN Sbjct: 377 WWRQNQ 382 >gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 280 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 20/275 (7%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 ++ S + + RR R ++F K R G V A + + Sbjct: 5 ELISPRSARVTAARRLAR-----RNFRGKDR------LFLAEGPQAVREA-AGHGDTLVE 52 Query: 71 LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT A R + H V + I QGL L +P + Sbjct: 53 LFATAEAAERYADIVSEAHAAGARVHLADETVVADI-STTVTPQGLVGVCRFLDTPFAEI 111 Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +L+ VL HV DP N G +LR A A + ++ T + +++ G+L H+ Sbjct: 112 LAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHL 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPK 243 P + +A+ + G + + + L+ E+ A + G E GL + Sbjct: 172 PVAVGVPVEEAVAGLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEE 231 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+E A ++ + + G ++LN++ AAAV LY + Sbjct: 232 TRELADAVVRVPIHGKAESLNLATAAAVCLYASAR 266 >gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 239 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 12/230 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + H Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60 Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 Q +A L +L++ + + L+++LD + DP N GAI+R+A F D II Sbjct: 61 QNIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S +P E+ Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKV 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K I+G E KG+ P + A + M G +++LNV A + L Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 268 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ + S +++ + GV V L + LL L L D Sbjct: 17 DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D +R+++ + VL+ VND NIG Sbjct: 75 VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + G +P+ +I L + GFQ Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194 Query: 209 TIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + P L + + +++AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERIR 265 >gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] Length = 260 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + + L G H A L+ + + AT+ ALA Sbjct: 2 KSITSRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L + P + V ++ +VL Sbjct: 61 HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ ++ AT + PG Sbjct: 179 AGRL---DVPVALTDSHGTQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281 +++LNV+ AAAV L+ Q A Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260 >gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 267 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 5/246 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97 ++ + + G + V AA++ + + T+ A R V P Sbjct: 24 RAAARKKANQFIIEGENAVDAAVSTGAAT--DVFVTEKAAERFQDIVTACGYMDVYVHPI 81 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156 + + A GL P+L + L+ V ++P N G ++R++ A Sbjct: 82 TDKAARHLSDTATTTGLFALCKPVLWSAGKILNGKPNLVSVPVLTSEPGNAGTLIRTSDA 141 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I +A++++G+L HIP R N+ D L ++ G Q + ++D Sbjct: 142 MGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQLRKSGMQILATAADG 201 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L + + A + G E GL + QE A + + G ++LN++ AA++ LY + Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELQEEADMRVRIPILGRAESLNLATAASICLYES 260 Query: 277 QNHFAK 282 + Sbjct: 261 AKALNR 266 >gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49] gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49] Length = 263 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 8/259 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ KK+ + KSR + + G VS A+ + L + +A L+ Sbjct: 9 NNPLIKKINALTDKSRERKKQGVFIVEGAREVSLAIKGHHEILTLLFCPE--IADLNALP 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVN 142 N+ +V KI A +G+ TLDA+ + + L+++ + Sbjct: 67 NVADSVEKISVSLDVYQKIA-YRATTEGVIAIVK-NSKTTLDALVFPKQNPLILIAEAPE 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIGA+LR+A A D ++ + + + +S+ G + S+ D + + Sbjct: 125 KPGNIGALLRTADAAHVDAVLIANPRTDLYNPNIIRSSVGCVFTNQVAMASS-EDIIAFL 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +P + A+++G E GL ++ +T+ H+ M G I + Sbjct: 184 KKNNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDS 243 Query: 263 LNVSNAAAVALYITQNHFA 281 LNVS AAAV L+ + Sbjct: 244 LNVSVAAAVLLFEAKRQRG 262 >gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + L + + G+ + SS Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 274 YITQNH 279 + QN Sbjct: 377 WWRQNQ 382 >gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 262 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + +KS+ + + G + A I +L + +++ Sbjct: 8 QNPYIKSLVLLQEKSKARKKSGTFLIEGQREIELA-QKGGFVIETILFLPDLISQKQITQ 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + K+ ++ LA +T P L L + + L+++ + P Sbjct: 67 ITNQAHDIIEISKEVYQKLAYRDTTEGILAVAKTKPFLLSDL-KLSQTPLILIAEAPEKP 125 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGA+LR+A A + D +I S + + +S+ G L + + + + Sbjct: 126 GNIGALLRTADAANLDAVIIANPKSDLYNPNIVRSSVGCLFTTQIATGT-TQEIITYLKE 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + P + AL++G E GL + + AT + M G I ++N Sbjct: 185 NKINFYCATLQNATPYHTQDYTPPTALVVGTEATGLTQEWRNNATQNIIIPMQGEIDSMN 244 Query: 265 VSNAAAVALYITQNHFA 281 VS AAA+ ++ + Sbjct: 245 VSVAAAILIFEAKRQRG 261 >gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 12/260 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R N R + +F ++R +S + + G H V AL + + + ++ R++ Sbjct: 11 RTNPRLKQLRAAFQGQARLSS--GLIAVEGEHMVEEALKSGQ-ALKTVFLSE----RMEL 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141 A +P V +V I + QG+A P + L+++ + Sbjct: 64 PAYVPASVEVVSVASDVFASIA-ETRTPQGIAALLVPPAHSVEKMLEGPGEALILIAVGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ++RSA AF G++TT + ++++G++ +P + DA++ Sbjct: 123 QDPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAMRASAGSVFRLPVAVAT--PDAMET 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + + D + + A+++G EG GL A + PG ++ Sbjct: 181 LEQQGIKLLAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPCPGWVE 240 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LN + A ++ LY Sbjct: 241 SLNAAVAGSILLYEASRQRG 260 >gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638] gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638] Length = 365 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 121 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDE 180 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + + ++ L+ V +PHN+GA++RS Sbjct: 181 ELTKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 239 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I ++ DA+++ G+ + SS Sbjct: 240 HFGVKGVLLQDA-AIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFRKAGYSIVTTSSH 298 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 + PL Q K+ L+LG E GL TA + G +++LNVS A V L Sbjct: 299 TGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVSIEGTGKVESLNVSVATGVLLAE 358 Query: 274 YITQN 278 + QN Sbjct: 359 WWRQN 363 >gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 267 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S ++ ALN + L K+ P Sbjct: 20 LTEAQLRNRIESDKGLFIAESPKVINVALNAGYEPLALLCEQKHITGDAADIIERCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P + R ++ + V++ V D NIGAI R Sbjct: 80 VYTGARELLATLTGYTLTRGVLCAMHRPTPKSVEEICRGARRIAVIEGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D I+ T+ + + + G++ IP+ + ++H GF+T+ + Sbjct: 140 SAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSP---NELHKLGFRTVAM 196 Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + ++ I K+A+++G EG GLR +T A + + M + +LNV+ A+ Sbjct: 197 ALTEKSISIDSPILATEPKLAIVMGTEGDGLRNETITEADYVVRIPMANGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] Length = 251 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 12/250 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q + +++ + + G H V A+ + + ++ +++ ++ Sbjct: 6 SNKKIKDIQKLKE-NKNIKKYGKYLIEGKHLVEEAMQ--ANVVEEIFISESFD---EYKL 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + + QG+ + ++ + +++LD V DP Sbjct: 60 IEAFQGEITKVADSVMRHLSDTITT-QGIIAVCN--IEEKKLDIKKYKKVLILDRVQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A AF+ D II K + + +S G+ HI +L D L+ M Sbjct: 117 NLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVDLVDLLEHMKD- 175 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 F S + K +EQ +A+I G EG G+ + + ++ + MPG ++LN Sbjct: 176 -FSIFATSLKADKYIEQLDNIVGNVAVIFGNEGSGVSEEILDKVNNLLKISMPGKAESLN 234 Query: 265 VSNAAAVALY 274 VS AA + ++ Sbjct: 235 VSIAAGIVMH 244 >gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 303 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 9/237 (3%) Query: 46 PENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +F+ TV AL+ + I L K R + PV T + + + Sbjct: 60 EHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCGDIPVYTADSKIMSGL 119 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G E L P + RN++ + VL+++ D N GAI+RSA A D ++ Sbjct: 120 TGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAIIRSAAALGIDAVLI 179 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSS-DSKK 218 T + + G + IP+ I Q ++S GF+T ++ D+ Sbjct: 180 TPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNSLGFKTAAMALTDNSV 239 Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + +++A+ILG+EG GL KT + + M + +LNV AAAVA Sbjct: 240 SIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAAVAF 296 >gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1] gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] Length = 255 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 112/250 (44%), Gaps = 8/250 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 10 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N + V D++ E Q + + P+ P + + + ++LD++ DP Sbjct: 67 NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A S DG+I + + ++ + +S G+ H+ ++ +++ L + Sbjct: 124 NVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 182 Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G D + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 183 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 242 Query: 265 VSNAAAVALY 274 + AA + +Y Sbjct: 243 AAVAAGIMIY 252 >gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38] gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38] Length = 264 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 102/258 (39%), Gaps = 5/258 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WD 84 + K + +K++ Q + G + AL + +L ++ L+ + Sbjct: 8 QNPFIKSLVQLQEKAKVRKQTSTFIIEGKREIELALKGDYE-LETILFLPEIISELELKN 66 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + K+ ++ LA+ L+ + + + L+++ + + P Sbjct: 67 LIKSNGVDIIEISKEVYKKLAYRDTTEGILAIAKTKSLALSELKLSKNPLILIGESLEKP 126 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAILR+A A + D +I S + + +S+ G L + + + + + Sbjct: 127 GNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIA-VGTTEEVIAYLKA 185 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + AL++G E GL K + +T + M G I ++N Sbjct: 186 NNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGLSEKWRIESTKNIIIPMQGEIDSMN 245 Query: 265 VSNAAAVALYI--TQNHF 280 VS AAA+ L+ Q F Sbjct: 246 VSVAAAILLFEAKRQRQF 263 >gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] Length = 246 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKITRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 354 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + ++I + K + + +R+ K R ++ ++G + VS A Sbjct: 30 QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82 Query: 66 RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112 +L + + P++ +D++ + VHQ Sbjct: 83 VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141 Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128 G+ ET AP + Sbjct: 142 QYLDVMELWDLAVARAEAAGRAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKP 201 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247 + +NLT ALQ + G IGL L D + ++ G+EG+G+ ++T Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +++LN + A +ALY Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348 >gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 88/217 (40%), Gaps = 6/217 (2%) Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 P + ++ + + L + P + V P+ +I E QG+ S Sbjct: 12 PEEQRAKVFVSSDFLKLHGEEL---KGIPFEEVSPKVFREISDTE-TPQGILSLVKMKQS 67 Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + + R+ +++L+++ DP N+G ++R+ GII ++ + + +S G Sbjct: 68 TLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMG 127 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ +P+ +L + ++ + + E + A ++G EG GL Sbjct: 128 SIFRVPFTYTEDLAETVEYLRQQSVHVYAAHLNG-TDYTDESYDKISAFLIGNEGNGLTD 186 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + M G +++LN + A + +Y + Sbjct: 187 RIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223 >gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 266 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 11/256 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ T + GV V L + ++ T +LD A Sbjct: 17 DFRDLSTADKRPDTTR--GVVLAEGVPVVERMLASRFAP-HAIMGT---APKLDRLAGQA 70 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V + ++VG LA P + +++++VL+ VND N+G Sbjct: 71 PAVPRYAVTADLMAEVVGFHLNRGVLAAAERPAPLDPARLLDEARIVVVLEGVNDHENLG 130 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSW 205 +I R+ A D ++ R S + + G + +P+ + D L + Sbjct: 131 SIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMGHVLLVPFAHLPAAGWPGDGLALLAER 190 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF+T+ L+ + + Q + + +++AL++GAEG GL + A A + M +L Sbjct: 191 GFRTVALTPSGESTVAQALAGRPERVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSL 250 Query: 264 NVSNAAAVALYITQNH 279 NV+ A AVALY + Sbjct: 251 NVATATAVALYECMSQ 266 >gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 273 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 111/283 (39%), Gaps = 19/283 (6%) Query: 1 MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58 M I+ +++ + H KLR K+ + + R ++ YG+ V Sbjct: 1 MEFVKITSTQNDSVK-----HVIKLRDRRPREKEQLTVLEGYRELTRARE---YGMEIV- 51 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 P +N L+ A+ V V P ++K+ +E +A+ Sbjct: 52 EVFFAPEH-----FLGQNEFPLLETFAS--EGVKVCQVAPFLLEKMAYRERPEGLIAIAK 104 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + VR + L +V + V P N+G++LRSA A DG I + + + + + Sbjct: 105 MKRHTLAEMPVRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIR 164 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++GAL +P N +A + +T+ + + + +A+++G E Sbjct: 165 ASTGALFSVPLAEAEN-QEAYDWLKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGTEQT 223 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 GL E + + M G I +LNV+ A + LY Sbjct: 224 GLTELWMEHSDLPVRIPMLGKIDSLNVATATTILLYEAARQRN 266 >gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 268 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ + S +++ + GV V L + LL L L D Sbjct: 17 DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D +R+++ + VL+ VND NIG Sbjct: 75 VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + G +P+ +I L + GFQ Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194 Query: 209 TIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + P L + + +++AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERIR 265 >gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 276 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 15/278 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + D + +L DY+ + + + + G V L + + Sbjct: 4 IIRIDDPNDPRLD----DYRDLNHSDTRPDLPGGKGLVIAEG-SLVIPRLLESRFPVRSI 58 Query: 72 LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128 L + L L + PV V + + ++ G + +H+GL ++ + Sbjct: 59 LGFQPKLDSLLAALGDAGANDVPVYEVTREVLAEVAGFD-MHRGLVAAADRAPEYSVGEV 117 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V + L +L+ V D NIG+I R+A DG++ + + + + G + +P Sbjct: 118 VDGASTLCILEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLP 177 Query: 189 YIRI----SNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRP 242 Y + +N L + GFQ I L+ ++ + K A+++GAEG GL Sbjct: 178 YAHMEGKTTNWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTE 237 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +LNV+ AAA+ Y H Sbjct: 238 HAMRATDVRARIPMQPGTDSLNVATAAAIGFYEALRHR 275 >gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 20/268 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ ++R + ++ AL+ L+A ++ + Sbjct: 18 DYTRLKDVKLRARLEPERGLYMAESTSVITRALDAGHSPRSFLMAQRHLPGLAGAIESAT 77 Query: 89 H-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMV 137 P P+ T P + ++++ G LA P L + + ++ ++V Sbjct: 78 GSADGGPVPIFTAPEEVLEQLTGFHLHRGALAAMHRPALPRADELLATARGGAPARRVVV 137 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + D N+GA+ RSA A D ++ T + + + G + +P+ R+ D Sbjct: 138 LEDLVDHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWPD 197 Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETAT 249 + +H GF L+ SD PL+ K+A+++G EG GL +T + Sbjct: 198 -MGALHGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AV + T+ Sbjct: 257 YTVRIPMEHGVDSLNVAAASAVVFWATR 284 >gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] Length = 354 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + ++I + K + + +R+ K R ++ ++G + VS A Sbjct: 30 QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82 Query: 66 RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112 +L + + P++ +D++ + VHQ Sbjct: 83 VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141 Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128 G+ ET AP + Sbjct: 142 QYLDVMELWDLAVARAEAAGRAASAGCAVVSPAVHEAPSGVLGETPKSDLAPHETVATKP 201 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247 + +NLT ALQ + G IGL L D + ++ G+EG+G+ ++T Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +++LN + A +ALY Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348 >gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 289 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 32/292 (10%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I SL++ +L + + R + + G + AL R I Sbjct: 5 ERITSLQNPRVKQLVK-----------LRDRRPRDEAGVFLVEGYRQIRRALEKNVR-IN 52 Query: 70 QLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA---------- 115 +L + + D V + K+ +E LA Sbjct: 53 ELYFSSDWFLGENEPALIDQAAAAGAQVIELSKDAFAKVAYRERPDGLLAVAPQWRHSLA 112 Query: 116 -----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 L+ PL P D + L+V++ + P N+G ILRSA A D +I + Sbjct: 113 DLAARLDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTD 172 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + ++++G L +P I + + + + G +++ + + +A Sbjct: 173 LFNPNVVRASTGVLFSVPVIVAGS-GEVREWLRERGIRSVATTPSATTLHTDSDLRGPLA 231 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +++G+E GL A + + M G +LNV+ A + L+ ++ Sbjct: 232 IVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQRSE 283 >gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R] Length = 270 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S + AL+ + L K+ + P Sbjct: 20 LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + G L P L + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ + + + + +L ++ GF+T + Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTAAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D ++ + K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320] gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 11/247 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N I + + R + V + Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPEAIVRAWFLQEVTPRFREALKWMAANRKAYHVVEEE 181 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K + H G+ + L ++ L+ V +PHN+GAI+RS Sbjct: 182 EMVKAARTD-HHGGVCFLIKKRVGHDAQTYLKDAPTKDCVLALEDVGNPHNVGAIMRSCA 240 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G+I+ S ES ++A G E+I I N L++ G+ + SS Sbjct: 241 HFGVKGVISPD-SSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSH 299 Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273 PL + +K+ LILG E GL T + ++ G I++LNVS A+ V L Sbjct: 300 KGSVPLAKAQLPEKMVLILGQEKDGLSDSTLKQGDMSIYIGGTGHIESLNVSVASGVLLA 359 Query: 274 -YITQNH 279 + Q+H Sbjct: 360 EWWRQHH 366 >gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] Length = 238 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 117/255 (45%), Gaps = 23/255 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + QK ++ + + G H V A+ ++++ L++TK+ Sbjct: 6 SNNTIKTLIKLKQK-KYRDETGYYLVEGEHLVEEAMK--AKQVECLISTKD--------- 53 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + P+ V + + K+ Q + + + + + + ++LD + DP Sbjct: 54 -ITSDLPIVIVSNEVMSKL-SFTKSPQFIMAKCK---IKKENKLIDGKRYLILDDLQDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A+AFS D +I + + L +S GA HI I +L + + Sbjct: 109 NIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIY-DDLKTVISTLKKN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + IG + ++ + ++Q ++K+A I+G EG G+ + + ++ + I++LNV Sbjct: 168 NVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIPI-NTIESLNV 226 Query: 266 SNAAAVALYITQNHF 280 + A ++ +Y HF Sbjct: 227 AIAGSIMMY----HF 237 >gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] Length = 288 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 127/297 (42%), Gaps = 42/297 (14%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ +K S F +DS + HR+Y+ L+GV A Sbjct: 1 MSSELRKLSLDDFPEEDSRERLSKEEHRNYET------------------LFGVSPCLLA 42 Query: 61 LNNPSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 L R +L ++ A R + P++ V ++K+ VHQGL Sbjct: 43 LTQGRRNAHRLFVKEGEASRRASVRQVCEEAHRQGVPIQRVSKNDLNKMCS-GGVHQGLC 101 Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L+ + L T D L +VLD V DP N+GAILRSA D + ++ R Sbjct: 102 LQASCLGFLTDDKTSKPPRDSSHIPLWLVLDGVQDPMNLGAILRSAYFLGVDRVASSLRN 161 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEI 224 S + V++K++SG +E + +LTD L+ + G+Q IG + ++ P+ + Sbjct: 162 SCPLTPVVSKASSGVMEVMRVYGYDSLTDMLKVKLAQGWQVIGTVGAEAENAHVPVMKCS 221 Query: 225 K---NDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274 K L++G EG+GL + + M + + +++LNVS A + L+ Sbjct: 222 KFQMTKPTLLLMGGEGEGLSRELRLQCEVMLTIIPRRDLHPGVESLNVSVATGILLH 278 >gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 13/265 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPS----RKIFQLLATKNALAR 80 + R + + R+ + LF+ G V A+ + + +L T A R Sbjct: 8 SPRSPRVTAARRLAKRNFRGKDRLFIAEGPQAVREAVAHRGPDGEATLVELFTTVEAAER 67 Query: 81 LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMV 137 + H V + + V + QGL L SP D + +L+ V Sbjct: 68 YADIVDAAHAAGARVHHAADTVLAE-VSQTVTPQGLVGVCRFLDSPFEDILAARPKLVAV 126 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L HV DP N G +LR A A D +I T + +++ G+ H+P + Sbjct: 127 LAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSHFHLPVAVGVPVEQ 186 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAH 253 A+Q + G + + ++ L+ E+ A I G E GL +T+ A ++ Sbjct: 187 AVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEETRALADAVVR 246 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + + G ++LN++ AAAV LY + Sbjct: 247 VPIHGKAESLNLATAAAVCLYASAR 271 >gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 272 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 94/259 (36%), Gaps = 7/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + + R + + G + A++ + +K L + Sbjct: 16 QNQKIKDVVRLRDR-RQREKTGKFLIEGYRELLRAVDAGFEIESLFICSKLFLGSHETAL 74 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVN 142 PV + KI ++ L AP L + +V + + Sbjct: 75 ISRCGDPVYSCAEHVFRKISYRDRPDG--LLAVAPQKRRALKQLPTPDGSPFYVVAEAIE 132 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P N+G ILRS+ A DG+I R + + + +++ G L +P + + L+ + Sbjct: 133 KPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGTLFTVPVLEAEG-EETLKWL 191 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + ++ + +A+++G E GL E A + M G+ + Sbjct: 192 KERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSELWMEHADIQVRIPMMGVADS 251 Query: 263 LNVSNAAAVALYITQNHFA 281 LNV+ A + LY A Sbjct: 252 LNVATATTLLLYEAIRQRA 270 >gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 107/277 (38%), Gaps = 30/277 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84 Y + ++R + AL + LL + L + D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV P+ + ++ G L LL + R+++ + V++++ D Sbjct: 76 GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDH 135 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240 + ++ S GF T+ ++ + + E+ DK+ALI G EG GL Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEGDGL 255 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 354 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + ++I + K + + +R+ K R ++ ++G + VS A Sbjct: 30 QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82 Query: 66 RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112 +L + + P++ +D++ + VHQ Sbjct: 83 VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141 Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128 G+ ET AP + Sbjct: 142 QYLDVMELWDLAVARAEAAGCAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKP 201 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247 + +NLT ALQ + G IGL L D + ++ G+EG+G+ ++T Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + +++LN + A +ALY Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348 >gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi JD1] Length = 246 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46] gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46] Length = 270 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S + AL+ + L K+ + P Sbjct: 20 LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + G L P L + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ + + + + +L ++ GF+T + Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTAAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D ++ + K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 265 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 9/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + ++++ + S+ ++ E L G AL + +L AT AL + Sbjct: 3 ENPRSPRVRAVAKLSKRAARQETGLFLLEGPQAAREALAWAPETVLELYATPTALEKHTD 62 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDH 140 DA ++ +D + QG+ + D + S L+ + + Sbjct: 63 VRDAAEKAGVDLQYTTEAVLDAMADT-VTPQGIVAVARQSPTALKDVLAGSPRLIAICEE 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A D ++ T R + + +S +G+L H+P L ++ Sbjct: 122 VRDPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVDLELAHVVE 181 Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++H G + + D L +++ ++ A + G E +GL A L + G Sbjct: 182 RVHEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLSLRLPIFGR 241 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 ++LN++ AA+V LY T FA+ Sbjct: 242 AESLNLATAASVCLYETA--FAQ 262 >gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] Length = 303 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 9/237 (3%) Query: 46 PENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +F+ TV AL+ + I L K R + PV T + + + Sbjct: 60 EHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCGDIPVYTADSKIMSGL 119 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G E L P + RN++ + VL+++ D N GAI+RSA A D ++ Sbjct: 120 TGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAIIRSAAALGIDAVLI 179 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSS-DSKK 218 T + + G + IP+ I Q ++S GF+T ++ D+ Sbjct: 180 TPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNSLGFKTAAMALTDNSV 239 Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + ++A+ILG+EG GL KT + + M + +LNV AAAVA Sbjct: 240 SIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAAVAF 296 >gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] Length = 244 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 17/240 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N +L +K + + + + + + KI+G H+G Sbjct: 7 NSIIESIKNNKG--LELYISK-ISPKSINIEKIAREYNTQIIKVNDLAKIIGNN-NHRGF 62 Query: 115 ALETA-----------PLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ L L+ +N+ +++LD + DP N GAILR++ F+ D Sbjct: 63 ALKLKISKSNNTNKQDKNLEEFLEKFQYKNNVFILILDGIEDPQNFGAILRTSEQFNIDL 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +IT++R S ++A +++SGA +++ + + N+ + ++ + GF K Sbjct: 123 VITSQRRSAKDNATTLRTSSGASQYVNKLIVPNINNVIKDLKKNGFWIYASDIKGKAINT 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALI+G EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 183 IKINDTKIALIMGNEGKGIHKLIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 380 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V + Sbjct: 136 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDE 195 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ ++ L + ++ L+ V +PHN+G I+RS Sbjct: 196 ELARASGTE-HHGGVCFLIKKRRGLDVTAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 254 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ S ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 255 HFGVKGVLVNDA-SQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 313 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 314 KGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 373 Query: 274 YITQNH 279 + Q+H Sbjct: 374 WWRQHH 379 >gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] Length = 246 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 115/241 (47%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKTQNIKILRISINELDKIL-KTKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N+GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNLGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ I ++N+ + + + GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTIIFLKKHGFWIYASDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ ++ + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKQNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group] Length = 517 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 54/281 (19%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHPFPVKTVPPQ 99 +YGV V AAL R+ + L + ++ L +K + Sbjct: 225 VYGVGPVLAALMAERREFYALYIQEGMDLSVSNKKKKDKKGIEKVLQLAERIGLKVIEAS 284 Query: 100 TID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151 D +V HQGL L+ +PL + L+ VR + + + LD V DP N+GAI+ Sbjct: 285 KHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAII 344 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210 RSA F +G++ + S S V++K+++G+LE I + N+ L G++ + Sbjct: 345 RSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLG 404 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------------- 255 G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 405 GTVASKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTD 464 Query: 256 -------------MPG--IIKALNVSNAAAVALYITQNHFA 281 M +++LNVS AA V LY H A Sbjct: 465 GGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 501 >gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF] gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 273 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 9/256 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + G V AL++ + +L T+ L D Sbjct: 17 DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGH-GMRSMLLTEKWLP-AMADVIEA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V P+T +++ G VH+G PL +P D + ++ + V + + D N Sbjct: 75 SEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHAN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA R+A A D + T R + K + GA+ +PY R+ + + G Sbjct: 133 LGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAG 192 Query: 207 FQTIG-LSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F SD L+ + + ++AL+ G+EG GL P A + M I +L Sbjct: 193 FTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSL 252 Query: 264 NVSNAAAVALYITQNH 279 NV+ A AV Y T+ + Sbjct: 253 NVAAATAVVFYATRKN 268 >gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78] gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78] Length = 273 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 9/256 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + G V AL++ + +L T+ L D Sbjct: 17 DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGH-GMRSMLLTEKWLP-AMADVIEA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V P+T +++ G VH+G PL +P D + ++ + V + + D N Sbjct: 75 SEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHAN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA R+A A D + T R + K + GA+ +PY R+ + + G Sbjct: 133 LGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAG 192 Query: 207 FQTIG-LSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F SD L+ + + ++AL+ G+EG GL P A + M I +L Sbjct: 193 FTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSL 252 Query: 264 NVSNAAAVALYITQNH 279 NV+ A AV Y T+ + Sbjct: 253 NVAAATAVVFYATRKN 268 >gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 ALN + L K+ PV T + + + G L Sbjct: 47 ALNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + R ++ ++V++ V D NIGAI RSA A D I+ T+ + + Sbjct: 107 RTLPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236 + G++ IP+ + ++ GF+T+ ++ + ++ I K+A+++G E Sbjct: 167 SMGSVFLIPWTWLDGSP---NELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G GL+ +T A + + M + +LNV+ A+A+A + + Sbjct: 224 GDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 8/256 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ N + ++ G + A + L T+ LD D Sbjct: 16 DYTRLRDVNLRRHLEAEHGLFMAEGDKVIRRA-AAAGFEPRSFLLTERRAEALD-DVVAA 73 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P+ V T +K+VG + LA L P D + ++ ++VL+ + D N+G Sbjct: 74 SSAPLYVVGEDTAEKLVGFDLHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVDHTNVG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA D I+ R + K + GA+ +P+ R+ + L + + GF Sbjct: 134 AIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLRAAGFH 193 Query: 209 TIGLSS-DSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKA 262 + L+ + PL + D++ L+LG EG GL + E AT+ H+ M + + Sbjct: 194 LMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVDS 253 Query: 263 LNVSNAAAVALYITQN 278 LNV+ AAA+A Y Sbjct: 254 LNVTAAAAIACYELTR 269 >gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 289 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 96/280 (34%), Gaps = 31/280 (11%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75 +++ K + +K++ ++ G A P + Q+ ++ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVCVSESFYETCMQGN 62 Query: 76 --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L R + + + V K V QG+ Sbjct: 63 MQDCMKSCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119 Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ Q L++L+ + DP N+G ++R+ G+I + + +S Sbjct: 120 EYALEKLIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P+ +L + + ++ K A ++G EG GL Sbjct: 180 MGSIYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + A + + M G +++LN + +A++ +Y T Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC 13950] Length = 281 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 6/252 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 21 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFHP-HALLGTDRRLTELKDDLA-G 78 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA + + ++ + VL+ VND N+G Sbjct: 79 STVPFYRTSADIMARVVGFHLNRGVLAAARRVGEPSVAEVIAGARTVAVLEGVNDHENLG 138 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D ++ + + + G +PY R + L + GF+ Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATCWPAELMTLKENGFR 198 Query: 209 TIGLSSDSKK-PLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ PL + + + +++A+++GAEG GL P T + + M +LN Sbjct: 199 LLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVRVRVPMSRGTDSLN 258 Query: 265 VSNAAAVALYIT 276 V+ AAA+A Y Sbjct: 259 VATAAALAFYER 270 >gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 16/249 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ +K ++ + + + G H + A + + +L A+ Sbjct: 8 NAKVKQWAKLKEK-KYREKDQRFLVEGEHLIEEA--ARAGLVEAVLVEIGK-------AH 57 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 +PV V + K+ + +A+ P + ++VLD V DP N Sbjct: 58 TFVEYPVYEVTKDILRKLESSVSGTWIMAVCRMPQYHDA----EFGKRVIVLDDVQDPGN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+AV+F D ++ + + + +S GAL HIP IR ++ L + G Sbjct: 114 VGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIR-GDVQAMLMSLKQKG 172 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + S + L + D AL+ G EGKG+ + A + + M ++LNV+ Sbjct: 173 NRILATSLHNASALREIAVPDAFALVFGNEGKGVSEEVLRLADTHVFIEM-HTFESLNVA 231 Query: 267 NAAAVALYI 275 AA + +Y Sbjct: 232 VAAGICMYA 240 >gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 267 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 12/259 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLP 88 K +++ +++S S+ G V A+ ++ + T R DA L Sbjct: 11 KSVRALSRRS-VRSRTGQFLAEGPQAVREAVRCAPEQVRDIYVTAEGADRHPEIVDAALA 69 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPH 145 V P+ + ++ E QG+ P LS L A+ ++ VL +V DP Sbjct: 70 AHLFVHEASPEVLHEMCDAE-HPQGIVAVCRWAEPTLSAALGALPRDAVVCVLTNVRDPG 128 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R A A D ++ + S + +S G+L H+P + + L + + Sbjct: 129 NAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRSTVGSLWHLPIVTGVPVPVILDALRAR 188 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + L + A ++G E GL + ++ + + + G ++LN+ Sbjct: 189 GVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAESLNL 248 Query: 266 SNAAAVALYIT-----QNH 279 + AA + LY + Q H Sbjct: 249 AMAAMLCLYASAESRVQRH 267 >gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a] gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40] Length = 246 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEQLAKTQNIKIIRINANELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 248 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 5/238 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AAL + ++ AT++A AR A L V V + Sbjct: 13 RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARF---AALLVGADVHLVTERAAK 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P +S + +L+ V ++P N G ++R A A D + Sbjct: 68 ALSDTVTPVGLVAVCRMPEVSLDEILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + ++++G++ + + + + +H G + + D + L+ Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATTLDGEVSLDD 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + GAE GL P+ A + + M G ++LNV+ AAA+ LY + Sbjct: 188 AELSGPTAWLFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSARAL 245 >gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] Length = 246 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQNIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4] gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4] Length = 260 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK++++ + + + L G H A L+ + + AT+ ALA Sbjct: 2 KSITSRDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGAIPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + GL L P V ++ +VL Sbjct: 61 HAEAQAIVARIDAPRVVTLPDALFGQLSNVVSGVGLLLLVERPAQPLPARVTDTS--VVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +++ S + + + +A + G EG G+ ++ AT + PG Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] Length = 256 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLP--HPFPVK 94 +++ + L +YG + V A L + K+ L + +LD L V+ Sbjct: 8 QTKKQALRRWLTVYGRNPVEACLQDAQLRPKVLHLADSNQKSDKLDRLIALAEKRGCDVR 67 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGA 149 + +I + QG+AL+ L S L++LD V +P N+G Sbjct: 68 FHDRDALARISKNKKQDQGVALDVECQAFNDLSVFLQSTSEETCRLILLDRVTNPQNLGM 127 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILRS A G+I +R ++AK+++G L H P +R ++ ++AL + GF Sbjct: 128 ILRSTTAAGITGVIVPERGCAPLGPLVAKASAGTLFHAPVLRCTSSSEALDALLGLGFTC 187 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 LSS ++ +E K +LG E +G+ P + + M +++LNV+ A Sbjct: 188 YTLSSHTESNFFEEHIPAKAVFVLGNESEGVAPDIASRCQAKVRIPMHNGVESLNVAITA 247 Query: 270 AVALYITQN 278 A+ Y Sbjct: 248 ALIAYYLDR 256 >gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228] Length = 246 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 24/267 (8%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S ++S K++ ++ KK R + + G+H + A + I Sbjct: 2 EQITSAQNS---KIKNANKLKKK--------RERDKTGLALVEGIHLIEEAYQSQIEVIQ 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + + ++ D V + + + + G QG PT D Sbjct: 51 LFIVDTDRMSSSIIDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 Q+L++ D + DP N+G ++R+A A D I+ K + + +++ G++ HIP Sbjct: 103 LAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I D +H + G + ++ ALILG EG+G+ P + T Sbjct: 162 I----FDDINNYIHQFNGPVYGTALENAVSFNDIEAQANFALILGNEGEGVNPDLLKETT 217 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G ++LNV+ A ++ +Y Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244 >gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158] gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158] Length = 260 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 9/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + AT+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPELCV-ATEGALQHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +VLD V Sbjct: 65 QAIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTS--VVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + D L Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDV-APDVLA-- 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 180 GRLDVPIALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYI--TQNHFA 281 LNV+ AAAV L+ Q A Sbjct: 240 LNVAAAAAVCLFEQVRQQRRA 260 >gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] Length = 368 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 116/286 (40%), Gaps = 26/286 (9%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 ISK+ SE+ L++ H ++ D ++++ + E +YG + A N Sbjct: 94 ISKQDSEE---LENDHGGISGKSQIDPEQLRK--------QRQEETRIYGENACQAMFKN 142 Query: 64 PSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 I + T L W A + V V + ++K G E H G+ Sbjct: 143 RPDGIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDAEELEKASGTE-HHGGVCFIIK 199 Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L ++ ++ L+ V +PHN+G I+RS F G+I ES Sbjct: 200 KRGGMQAEAYLQEAADTDCVLALEDVGNPHNLGGIMRSCAHFGIQGVILQDAG-MLESGA 258 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234 ++A G EH+ I T L+K G+ + SS + + + K+ L+LG Sbjct: 259 AIRTAEGGAEHVKAIDADGFTPTLEKFRQAGYTIVTTSSHKGSQDIAKVQLPKKMVLVLG 318 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 E GL T + ++ G +++LNVS A + L + +QN Sbjct: 319 QESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 364 >gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] Length = 248 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 9/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKI 104 N +YG + V L + I ++ N +L + + + +I Sbjct: 7 NNIVYGRNAVLELLQHKPESIEKIYFQFNTSHPKLKEIVITARRLKLVSGKARLEKLSEI 66 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G HQG+ + + +L+ V ++ LL+VL ++DPHN+GAI+R+A A + Sbjct: 67 AGTTK-HQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ + +A + K+A+GAL H+ ++ +L L+ +H Q D+++ Sbjct: 126 DAVVVVEGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERN 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AL+LG EG GL P+ + ++ L M G +++LNVS A V LY Sbjct: 186 YTDVDMRQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] Length = 352 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 108 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 167 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+GA++RS Sbjct: 168 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 226 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I ++ +A+++ S G+ + SS Sbjct: 227 HFGVKGVLLQDA-ALLESGAAIRTAEGGAEHVQPITGDSVLEAIEQFRSAGYTIVTTSSH 285 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 PL + K+ L+LG E GL +A ++ G +++LNVS A V L Sbjct: 286 EGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSINGTGNVESLNVSVATGVLLAE 345 Query: 274 YITQN 278 + QN Sbjct: 346 WWRQN 350 >gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] Length = 280 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 ALN + L K+ PV T + + + G L Sbjct: 47 ALNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRR 106 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + R ++ ++V++ V D NIGAI RSA A D I+ T+ + + Sbjct: 107 RALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236 + G++ IP+ + ++ GF+T+ ++ + ++ I K+A+++G E Sbjct: 167 SMGSVFLIPWTWLDGSP---NELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTE 223 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G GL+ +T A + + M + +LNV+ A+A+A + + Sbjct: 224 GDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 299 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 23/275 (8%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 ++ SL+ RR + +SF K R + G V A+ + + + Sbjct: 27 ELTSLRSPRVTAARRLAK-----RSFRGKERR------FLVEGPQAVREAIAH----LVE 71 Query: 71 LLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + AT A AR +A PV T I ++ QG+ L SP + Sbjct: 72 VYATPEAAARHTGIVEAARASRIPVLTASDDVIAEMSDT-VTPQGIVGLCRFLDSPFEEI 130 Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 +R +L+ VL +V DP N G +LR A A D ++ T + +++ G+L H+ Sbjct: 131 LRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSLFHL 190 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPK 243 P + +A+ + + G + + ++ L++E+ + A I G E GL Sbjct: 191 PVATGVPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAPTAWIFGNEAWGLPEA 250 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ A + + + G ++LN++ AAAV LY + Sbjct: 251 TRALADEVVRVPIHGRAESLNLATAAAVCLYASAR 285 >gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1] Length = 285 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 18/242 (7%) Query: 56 TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 + AL+ + LL ++ + P+ T P + K+ G L Sbjct: 43 VIERALDAGYEPVSILLEDRHVEGQCADIIKRCGDIPIYTAPFDVLTKLTGFALTRGMLC 102 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L ++ + VL+ V +P N+GAI RSA A D ++ T S Sbjct: 103 AMRRAELPSVESVCEHAARIAVLEEVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRR 162 Query: 176 LAKSASGALEHIPYIRIS---------------NLTDALQKMHSWGFQTIGLSS--DSKK 218 A+ + G + IP+ I+ + ++HS GF+T ++ D+ Sbjct: 163 AARVSMGTVFQIPWTYITFDTLGLAHNKADHGIWPEFGMGQLHSMGFRTASMALRNDTID 222 Query: 219 PLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + E+K D++A+ILG EG+GL+ +T +++ + M + +LNV+ A+AVA + Sbjct: 223 IHDPELKQIDRLAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSLNVAAASAVAFWELG 282 Query: 278 NH 279 Sbjct: 283 RR 284 >gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 282 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 8/251 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPF 91 + ++R + ALN + LL N + D Sbjct: 20 LTEAQLRNRLEPSRGIFIAESPKVIKVALNAGYEPL-ALLCEHNHITGDAADIIKSCGDI 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV T + + + G L +L + R ++ ++V+D V D NIGAI Sbjct: 79 PVYTGSRKLLATLTGYVLTRGVLCAMRRRMLPSVEEVCREARRIVVIDGVVDTTNIGAIF 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A D ++ T+ + + + G++ +P+ + L +L ++ +GF+T Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLLPW---TWLDGSLSGLNKYGFRTAA 195 Query: 212 LS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 ++ SD ++ + K+A+++G EG GL +T A + + M + +LNV+ A Sbjct: 196 MALSDHSISIDDPVLTAEPKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAA 255 Query: 269 AAVALYITQNH 279 +AVA + + Sbjct: 256 SAVAFWQLRAQ 266 >gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 264 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 97/250 (38%), Gaps = 4/250 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K QKS Q + G + AL +P + Q+ + Sbjct: 6 SKDNKKIKYAARLKQKS-FRKQEACFLIEGKKMLEEALKHPKL-LRQIFIEAELASEYTE 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + I E G+ + + + L+ LD + D Sbjct: 64 LYQQHPEWECYVVDKRLMKHISDTETPP-GIVALCQIPSWSREEFLSQNAFLLYLDRIAD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RS A DGI+ + S + +++ G + +IP + + D L+++ Sbjct: 123 PGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFNIPLL-LDFSVDELKRLK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S +++ + L +G+E +G+RP +E + + + +L Sbjct: 182 QNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCKIPIKPGVDSL 241 Query: 264 NVSNAAAVAL 273 N + A A+ + Sbjct: 242 NAAVACAIII 251 >gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] Length = 364 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 26/287 (9%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 +SK SE++ + H + ++ D ++++ + E +YG + A N Sbjct: 91 VSKPDSEELT---NDHGGIVGKSQIDPEQLRK--------QRQEETRIYGENACQAMFKN 139 Query: 64 PSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 I + T L W A + V V + + K G E H G+ Sbjct: 140 RPDAIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDDEELSKASGTE-HHGGVCFIIK 196 Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L + ++ L+ V +PHN+G I+RS F G+I ES Sbjct: 197 KRGGMSADAYLQQAAGNDCVLALEDVGNPHNLGGIMRSCAHFGIKGVILQDAG-MLESGA 255 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234 ++A G EHI I LTD L K G+ + SS + L + K+ L+LG Sbjct: 256 AIRTAEGGAEHIKAIDADGLTDTLDKFRKAGYTIVTTSSHKGSQDLAKAKLPAKMVLVLG 315 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 E GL T + ++ G +++LNVS A + L + QN Sbjct: 316 QESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQNQ 362 >gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 239 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 12/230 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + H Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60 Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 Q +A L +L++ + + L+++LD + DP N GAI+R+A F D II Sbjct: 61 QNIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S + E+ Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKV 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +K I+G E KG+ P + A + M G +++LNV A + L Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56] Length = 209 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 101/195 (51%), Positives = 135/195 (69%), Gaps = 13/195 (6%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQ--------PENLFLYGVHTVSAAL 61 S KD+HYA LRR HRD K+ + + + R ++ P+ ++LYG+HTV AAL Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +NP RK +L T+NALARL+ D + V P IDK++G EA+HQG+ LET PL Sbjct: 76 DNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETRPL 134 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSAS Sbjct: 135 PVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSAS 194 Query: 182 GALEHIPYIRISNLT 196 GALE IPYI+I+NL Sbjct: 195 GALELIPYIQITNLA 209 >gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis M163/99/10] gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] Length = 265 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 18/276 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116 L ++ + LL +N L L + LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ P L L A+ L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G EG+GL + E A + M +LNV+ A+ Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATAS 265 >gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] Length = 246 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKIIRINTNELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 220 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 19/219 (8%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NP +I + + K +P V V +D +V HQG+ AP Sbjct: 5 ENPGTEIVEKILNK-----------IPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPS 52 Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T D ++LD + DP N+G ILR+A F II +R S + Sbjct: 53 KQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITP 112 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 V+ K ASGAL + + NL + L+ + G+ + S + + +++ +++G Sbjct: 113 VVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMG 172 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+G++ E + + + M G + +LNV+ A + L Sbjct: 173 NEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211 >gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 268 Score = 192 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I LL + L L D + Sbjct: 17 DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFEPI-SLLGVERRLLELADDLD-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA P D +++++ ++VL+ VND N+G Sbjct: 75 VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L ++ GFQ Sbjct: 135 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 194 Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + L + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERVR 265 >gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 255 Score = 192 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 10/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K+++ + R + L GVH V A + L+ ++A A + Sbjct: 6 SRDNAFFKQLKRLAESGRERRKTGQTLLDGVHLV-EAYEKAFGPLENLIVAESAAAGGEI 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142 A L V V + + +G GL P + +D +++ ++LD V Sbjct: 65 AAYLEGRQAV--VLADALMRDLGLVDTPSGLLAVAPMPQRTALVDLGKDA---VLLDGVQ 119 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+A A ++ + + S + ++ GA + ++L + Sbjct: 120 DPGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGAHFVLAIHEEADLAAFMADY 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T D L + +A I GAEG G+R + ETA + MPG +++ Sbjct: 180 RG---TTAVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVES 236 Query: 263 LNVSNAAAVALYITQNH 279 LNV AAAV L+ Sbjct: 237 LNVGAAAAVCLFEALRR 253 >gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 192 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 11/272 (4%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKN 76 YA + ++ ++++ + ++ T++ E L G V+ AL S + +L AT Sbjct: 5 RYAGVMLDNPRSPRVRAVAKLTKRTARSETGLFLLEGPQAVAEALAFRSELLVELYATPT 64 Query: 77 ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133 AL R A V+ V Q + I QG + + S Sbjct: 65 ALERHQDIAQAAAAAGTQVEFVTEQVLGTIADT-VTPQGFVAVARQFPTSVREIFAGSPA 123 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ +L+ V DP N G I+R+A + D ++ T R + + +S +G+L HIP + Sbjct: 124 LVAILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVAVGA 183 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250 +L + + + G + + + L A + G E +GL + Sbjct: 184 DLPEVVSCARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLGLVDR 243 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +++N++ AA+V LY + FA+ Sbjct: 244 AVAVPIYGRAESMNLATAASVCLYESA--FAQ 273 >gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L] gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L] Length = 259 Score = 192 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 18/272 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + S K+ ++R+ HR + Q + L G H ++ A + Sbjct: 2 LTSTKNPLVKEIRKLHR-----------VKGRRQQDLFLLEGTHLLAEACAVDYPLVTLC 50 Query: 72 LATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDA 128 ++ A +L DA++ V+ V + I +A PL L++ Sbjct: 51 YTSEWLEAHPQLSQDASVRSQ-RVEVVSQSVLKAIATTVEPDGVVATATRLPLSPKPLNS 109 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L + L+ + DP N+G I+R+AVA +G+ + ++ + +++ G +P Sbjct: 110 L---SLGLALETIQDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLP 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +L + + + G Q + D+K ++LG E GLR +TA Sbjct: 167 MAVTPHLPTLVAQAQAQGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTA 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++LNV+ AAA+ LY + Sbjct: 227 DQQVNIPLMPGVESLNVAIAAALMLYEAKRQR 258 >gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] Length = 246 Score = 192 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 +++ ++ N F+L +K + + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKIIRINANELDKIL-KNKDHRG 63 Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 64 FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243 Query: 281 A 281 Sbjct: 244 N 244 >gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 267 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S ++ ALN + L K+ P Sbjct: 20 LTEAQLRNRIESDKGLFIAESPKVINVALNAGYEPLALLCEQKHITGDAADIIERYDDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + ++ G L P + + ++ + V++ V D NIGAI R Sbjct: 80 VYTGARELLARLTGYILTRGVLCAMHRPTPKSVEEICKGARRIAVIEGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D I+ T+ + + + G++ IP+ + ++H GF+T+ + Sbjct: 140 SAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSP---NELHKLGFRTVAM 196 Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + ++ I K+A+++G EG GLR +T A + + M + +LNV+ A+ Sbjct: 197 ALTEKSISIDSPILATEPKLAIVMGTEGDGLRNETITEADYVVRIPMANGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor salsuginis DSM 16511] gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor salsuginis DSM 16511] Length = 233 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + +YG V AL ++ ++ K + L D + + + + ++ + Sbjct: 6 MIIYGKQVVLHALRRHPEQVHKIYIAKKGV--LPQDLFEKYGDKITFIENRWAQQL-SRG 62 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQGL E +L V+ ++VLD + D NIGAI+RSA A DGI+ T Sbjct: 63 GNHQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATGIG 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + SA + +++SGAL +P+ N+ D L ++ G + G S + + P+E+++ + K Sbjct: 123 QLNFSA-VTRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEGE-PIEEKLFDRK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG+E +G+ K +E + M +LNVS AAA+ ++ Sbjct: 181 RTLVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226 >gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537] Length = 257 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 25/275 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I ++ ++ + K R+ +R Y L G H V A Sbjct: 1 MDRILSNQNPRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K ++AT+ +A + ++PH P + + I G + QG+ E + Sbjct: 42 IKVKA-KFHAVMATETQMA--EHLPDVPHGVPAFEISEEVAKHIAGTNS-PQGIFAEISL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD++ DP N+G ++R+A A G++ + + S + ++ Sbjct: 98 PEKTFDPKYVHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + +L + + S G L ++ K + LI+G EG G Sbjct: 158 QGSQFHLEVLN-GDLDEWTDALISNDLPVYGSLLNEEAKSYHDVQPATQFGLIVGNEGNG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T+ ++ + G ++LNV+ A + ++ Sbjct: 217 MSAALADKTTANLYIPIQGRAESLNVAIAGGILMF 251 >gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + AL+ + + ++ + + P Sbjct: 20 LTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLSMMCEERHIVGDAADIISRCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + ++ G L +A ++ + V+D V D NIGAI R Sbjct: 80 VYTGERALLAQLTGYTLTRGVLCAMRRKPTRSVAEACADATRVCVIDGVTDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ K + + + G++ +P+ L ++ + GF+T + Sbjct: 140 SAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPWTWSEQP---LAELSALGFRTAAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + L+ ++A+++G EG GL + A + + M + +LNV+ A+ Sbjct: 197 ALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQVIAQADYVVRIPMAHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWELR 264 >gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 287 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 109/283 (38%), Gaps = 18/283 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M + K ++I SL ++ K +++ +QK ++ ++ G+ V A Sbjct: 6 MCMPKTGKVKEITSL----------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDA 54 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLAL 116 L N KI L+ +K+ ++ + H V + ++ I ++ + + Sbjct: 55 L-NLGWKIQTLIFSKSKISNTAIENTAAHTVANGGLVIKASQKVMESIARRDNPQTVIGI 113 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 S + + + + LD V DP N+G I+R+A A G+I + S Sbjct: 114 FKQQWQSLEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET 173 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGA 235 ++ G++ +P R H G +G KN + L++G Sbjct: 174 VRATMGSIFSVPLYRFDESAFLNWSTHFKGM-IVGTHLKGSIDYRTIDFKNGPVILLMGN 232 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E +GL +A + G +LN++ A A+ LY + Sbjct: 233 EKQGLPDILANCCDKLARIPQSGRADSLNLAVATAIMLYEIRR 275 >gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1] gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1] Length = 244 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 17/240 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N +L +K + + + L +K + + KI+G H+G Sbjct: 7 NSIIESIKNNKG--LELYISKTSPKAISIE-QLARQHNIKIIKINDLTKILGNN-NHRGF 62 Query: 115 ALETAPL-----------LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ L L L +N+ L+++LD + DP N GAILR+A F+ D Sbjct: 63 ALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDL 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +IT +R S ++A + +++SGA +++ + + N+ + ++ + GF + Sbjct: 123 VITNQRKSVKDNATVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINN 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I ++KIALI+G EGKG+ + + + + G I +LNVS + + ++ + Sbjct: 183 TKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly] gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly] Length = 244 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 115/240 (47%), Gaps = 17/240 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N +L +K + + + L +K + + KI+G H+G Sbjct: 7 NSIIESIKNNKG--LELYISKTSPKTISIE-QLARQHNIKIIKINDLTKILGNN-NHRGF 62 Query: 115 ALETAPL-----------LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ L L L +N+ L+++LD + DP N GAILR+A F+ D Sbjct: 63 ALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDL 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +IT +R S ++ + +++SGA +++ + + N+ + ++ + GF + Sbjct: 123 VITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINN 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I ++KIALI+G EGKG+ + + + + G I +LNVS + + ++ + Sbjct: 183 TKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi] Length = 366 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 122 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 181 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ ++ L ++ ++ L+ V +PHN+G I+RS Sbjct: 182 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 240 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 241 HFGVKGLLVNDA-AQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 299 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 300 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 359 Query: 274 YITQNH 279 + QNH Sbjct: 360 WWRQNH 365 >gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] Length = 296 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 6/251 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + + L K+ P Sbjct: 49 LTEAQLRNRIDPEKGIFIAESPKVIRVALDAGYQPLALLCEKKHIEGDAADIILRAGDIP 108 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P + R+++ + V+ V D NIGAI R Sbjct: 109 VYTGSRELLASLTGYTLTRGVLCAMRRPAPRTPEEVCRDARRVAVIHGVVDTTNIGAIFR 168 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D I+ + + + + G++ +P+ + L + + GF T L Sbjct: 169 SAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFLVPW---TWLPRPVSSLREMGFCTASL 225 Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + D P++ + ++A+++G E GL + + + + M + +LNV+ A+ Sbjct: 226 ALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAAS 285 Query: 270 AVALYITQNHF 280 AVA + + Sbjct: 286 AVAFWELRARR 296 >gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937] gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937] Length = 362 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 118 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 177 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ ++ L ++ ++ L+ V +PHN+G I+RS Sbjct: 178 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 236 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 237 HFGVKGLLVNDA-AQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 295 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 296 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 355 Query: 274 YITQNH 279 + QNH Sbjct: 356 WWRQNH 361 >gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 281 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + + I LL + L L D + Sbjct: 30 DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFQPI-SLLGVERRLLELADDLD-G 87 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA P D +++++ ++VL+ VND N+G Sbjct: 88 VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 147 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L ++ GFQ Sbjct: 148 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 207 Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + L + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 208 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 267 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 268 AAAMAFYERVR 278 >gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 362 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 118 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 177 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L + ++ L+ V +PHN+GAI+RS Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLQSAPAKDCVLALEEVGNPHNLGAIVRSCA 236 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + ES ++A G EHI I + L G+ + SS Sbjct: 237 HFGVNGVLLQDP-ALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSH 295 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 L Q K+ L+LG E GL + + G +++LNVS A + L Sbjct: 296 KGTTLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLAD 355 Query: 274 YITQNH 279 + QN Sbjct: 356 WWRQNQ 361 >gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 12/262 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKI---FQLLATKNALARLDW 83 R + + + R+ E LFL G V A + + +L T A R Sbjct: 25 RSPRVLAARRLAKRNFRGKERLFLAEGPQAVREAAAHREGPVPTLVELFTTPEAAERYAD 84 Query: 84 DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDH 140 V Q I I QGL L +P + +L+ VL H Sbjct: 85 IVGGARGAGARVHLASEQVIADI-STTVTPQGLVGVCRFLDTPFEQILAARPRLVAVLAH 143 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR A A + ++ T + +++ G+L H+P + A+ Sbjct: 144 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAIGVPVEQAVA 203 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + + + L+ E+ A + G E GL +T+ ++ + + Sbjct: 204 GLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALTDAVVRVPI 263 Query: 257 PGIIKALNVSNAAAVALYITQN 278 G ++LN++ AAAV LY + Sbjct: 264 HGKAESLNLATAAAVCLYASAR 285 >gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] Length = 292 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 30/277 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84 Y + ++R + AL + LL + L + D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV P+ + ++ G L L + R+++ + V++++ D Sbjct: 76 GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCRSARRVAVMENIVDH 135 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240 + ++ S GF T+ ++ + + E+ DK+ALI G EG GL Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGL 255 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 259 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 8/259 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R + K G + + L T+ AL + Sbjct: 3 KITSRENAKIKYACRLASSGAFRRSEGKFLAEGRKLCPELCRGAA--LETLFCTEAALEK 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP V DK+ HQG+ TLD + + L+ Sbjct: 61 CPELAGLPGEH--YLVEDHVADKLAD-VGTHQGV-FGIFRTPVHTLDEAKTGGRYLALER 116 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G +LRSA AF DG++ + + + +++ GA +P + + + A+ Sbjct: 117 VQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGAMPAAIA 176 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + + + +PL + +++G+EG+GL +T + + M Sbjct: 177 ALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSGTVRIPMTD 236 Query: 259 IIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 237 RVESLNAGIAGSILLWHFR 255 >gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 14/265 (5%) Query: 26 NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLD 82 + D ++ + + + + F+ V L ++ + LL +N LA L Sbjct: 19 DDPDDIRLSPYRSIREKDLVGRQQRFIAEGKVVLNVLFSSSARFETESLLVLENRLAGLG 78 Query: 83 WDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMV 137 LP PV +VP +D + G VH+G+ P L L A+ L++V Sbjct: 79 EQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPGLEAMLGALPAKSLVVV 137 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +++ N+G+I R+A AF D ++ + + + GA +PY N+ + Sbjct: 138 LCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGATLKVPYFHGGNIDE 197 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + F + LS S + K D+ AL+LG EG+GL P+ A + M Sbjct: 198 IIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLPPRLLGKL-QTARIPMS 256 Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282 +LNV+ A+ +AL + F+K Sbjct: 257 TAFDSLNVATASGIAL----SRFSK 277 >gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 240 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 105/253 (41%), Gaps = 18/253 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ QK ++ + + + G H + A I Q++ T + + Sbjct: 6 QNETIKEIVKLKQK-KYRDEKKMFLIEGFHLIEEA--RKKHSILQIITTLSDDFEEETL- 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V ++K+ Q + + V + Q ++LD V DP Sbjct: 62 ---------HVSQNVMNKLA-FTRSPQPIMAICRQNNHSLI--VEDGQRYLLLDRVQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A+AF D +I ++ + + ++ GAL + + NL DA+ + Sbjct: 110 NVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALFQMNVC-VMNLKDAIVFLKHQ 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G +E DK+A ++G EG+G+ + E ++ + +++LNV Sbjct: 169 GVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELCQHRLYIPIQ-TVESLNV 227 Query: 266 SNAAAVALYITQN 278 A+A+ +Y Q Sbjct: 228 GIASAITMYHFQK 240 >gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group] Length = 517 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 138/350 (39%), Gaps = 79/350 (22%) Query: 6 KKKSEKIFSLKDSHYAKLRRNH-----------------RDYKKMQSFNQKSRHTSQPEN 48 + K +KD + + R+ R + + +++ +K+ E+ Sbjct: 157 SIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKT-WKEAGES 215 Query: 49 LF-------LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHP 90 +YGV V AAL R + L + ++ L Sbjct: 216 TVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAER 275 Query: 91 FPVKTVPPQTID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVN 142 +K + D +V HQGL L+ +PL + L+ VR + + + LD V Sbjct: 276 IGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 335 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RSA F +G++ + S S V++K+++G+LE I + N+ L Sbjct: 336 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 395 Query: 203 HSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------ 255 G++ + G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 396 AENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 455 Query: 256 ----------------------MPG--IIKALNVSNAAAVALYITQNHFA 281 M +++LNVS AA V LY H A Sbjct: 456 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 501 >gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680] gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680] Length = 272 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 7/241 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY + + + G + A + LL+ K D L Sbjct: 16 RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDEL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 P PV V P+ +++ G VH+G PT D + ++ +++++ VND N Sbjct: 76 P--APVYAVSPELAEQVTGYH-VHRGALASMQRKPLPTADELLATARRVVIMESVNDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI RSA A D ++ + + K + GA+ +PY R+ L+ + G Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAG 192 Query: 207 FQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + L+ D K K L++ + D++AL+LGAEG GL + A + M + +L Sbjct: 193 FNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSL 252 Query: 264 N 264 N Sbjct: 253 N 253 >gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311] gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311] Length = 261 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 101/248 (40%), Gaps = 8/248 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++++K+Q + ++ + + G H V A+N LL +K + +W + Sbjct: 13 KEWRKLQ----QKKYRQDQKKYIVEGFHLVEEAINTNQSIESILLTSKGKMEWEEWLLD- 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + + K QG+ A + + ++LD++ DP N+ Sbjct: 68 KDFSQIIIVSEEVM-HYLSKLPTPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQDPGNV 126 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A G+I + + S +S G+ H+ + ++L L + Sbjct: 127 GTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSIL-HASLPAVLSQFQEKEI 185 Query: 208 QTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + Q L++G EG+G+ + H+ M G ++LNV+ Sbjct: 186 PVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASESLNVA 245 Query: 267 NAAAVALY 274 AA + ++ Sbjct: 246 VAAGILIF 253 >gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 267 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 6/248 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R S + AL+ + L + + P Sbjct: 20 LTEAQLRNRLESDKGIFIAESPKVIKVALDTGYEPLALLCEQNHITGDAAYIIGRCGDIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + G L P + ++++ +++++ V D NIGAI R Sbjct: 80 VYTGSRDLLTTLTGYILTRGVLCAMRRPKPQNIKEVCQDARRIVIINGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T + + + G++ +P+ I N +L + GF+T+ + Sbjct: 140 SAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFLVPWTWIDN---SLSDLCGLGFRTVAM 196 Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + ++ P++ I + K+A+I+G EG GL + A + + M + +LNV+ A+ Sbjct: 197 ALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 279 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 16/278 (5%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 I L+D +L Y M + S + AL R + Sbjct: 2 PIIHLEDLDDPRL----AAYSGMTDAQLRDCPDSANGLFIGESRKVIERALAAGVR-MRS 56 Query: 71 LLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L + L + +D + FPV + + G E LA P L Sbjct: 57 LFMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVE 116 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + +++ + VL+ V + NIGA+ RSA A D ++ T A+ + G + Sbjct: 117 DLLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQ 176 Query: 187 IPYIRISN----LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKG 239 +P+ RI + + + + S GF T L+ SD L E DK+AL+LG EG G Sbjct: 177 VPWTRIGSERAWAAEGVPLLRSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDG 236 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L P T + M + +LNV+ A+AVA + + Sbjct: 237 LAPSTIANCDYTVKIPMDHEVDSLNVAAASAVAFWELR 274 >gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 267 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 8/241 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + AL R LL K D Sbjct: 17 DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALAAGFRMRSMLLTAKWLGVMADVIEG-- 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V P +++ G VH+G E PL + + ++ + VL+ + D N Sbjct: 75 TDAPVHLVDPVLAERVTGYH-VHRGALASMERKPLPGAP-EVLAGARRVAVLEGLVDHTN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA A D ++ + + K++ GA+ +PY R+ DAL + G Sbjct: 133 LGAIFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAG 192 Query: 207 FQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 F+ + L+ + + K AL+LGAEG GL PK A + M I +LN Sbjct: 193 FELLALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLN 252 Query: 265 V 265 V Sbjct: 253 V 253 >gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 96/262 (36%), Gaps = 8/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K + ++ +H + E + G+ + A+ + +I + Sbjct: 8 SKQNEQVKNLVKLRER-KHRDRQERFLVEGLRELEHAIGSG-FEIETIYFCPELFPSAAH 65 Query: 84 DANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 A + P+ + + K +E + + S + LL+VL Sbjct: 66 QATIDQLRRDGEVPLTRMSEEAFSKAAYREGPDGIVGIGKQQAHSLHELHLPKQPLLLVL 125 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + P N+GAILRSA D II T + +S+ G + +P + ++ Sbjct: 126 EGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPNAIRSSQGLIFALPIVN-ADREAL 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + +QT+ + + + + AL G+E GL + M G Sbjct: 185 ADWLQKGRYQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNHLDQRICIPMKG 244 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +LNV+ AAAV LY + Sbjct: 245 RADSLNVAAAAAVCLYEARRQR 266 >gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] Length = 259 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106 +YG+HTV++ LN+ + + KN+ + ++ V + +D + Sbjct: 5 IIYGIHTVNSYLNDKNVVFELVYILKNSRNNRIFQIKKKLESFGVSIRLVNRRFLDHLSN 64 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + N L ++LD + D N+G+ LR+A F D Sbjct: 65 Y-ISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I +K S + ++ K + GA ++P IR +NL + ++K+ + Q +G + + + Sbjct: 124 AVIVSKNRSARINEIVEKVSCGASRYVPMIR-TNLVNCIEKLKKYDVQVLGTDEKANRSI 182 Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EI KIA+I+G E KG+R ++ + + + +LNVS A + L+ Sbjct: 183 YDLEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLFEVCRQ 242 Query: 280 F 280 Sbjct: 243 R 243 >gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 294 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 8/257 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A ++ Sbjct: 30 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 88 Query: 87 ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142 V V + + I ++ Q + P + +N+ + + LD V Sbjct: 89 ARTFAKGGLVLEVTEKIMAAITRRD-NPQMVVGVFEQQYRPLANLKPKNNDVYIALDRVR 147 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A A GII + S ++ G++ +P +++ D L Sbjct: 148 DPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPLYKVTE-ADFLNWR 206 Query: 203 HSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 +G N + L++G E +GL +T +A + G Sbjct: 207 KDISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLADTCDKLARIPQAGRAD 266 Query: 262 ALNVSNAAAVALYITQN 278 +LN++ A V LY + Sbjct: 267 SLNLAIATGVMLYEIRR 283 >gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group] Length = 427 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 138/350 (39%), Gaps = 79/350 (22%) Query: 6 KKKSEKIFSLKDSHYAKLRRNH-----------------RDYKKMQSFNQKSRHTSQPEN 48 + K +KD + + R+ R + + +++ +K+ E+ Sbjct: 67 SIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKT-WKEAGES 125 Query: 49 LF-------LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHP 90 +YGV V AAL R + L + ++ L Sbjct: 126 TVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAER 185 Query: 91 FPVKTVPPQTID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVN 142 +K + D +V HQGL L+ +PL + L+ VR + + + LD V Sbjct: 186 IGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 245 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RSA F +G++ + S S V++K+++G+LE I + N+ L Sbjct: 246 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 305 Query: 203 HSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------ 255 G++ + G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 306 AENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 365 Query: 256 ----------------------MPG--IIKALNVSNAAAVALYITQNHFA 281 M +++LNVS AA V LY H A Sbjct: 366 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 411 >gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] Length = 361 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ + ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ ES ++A G EH+ I + D L + G+ + SS Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273 + PL + K+ L+LG E GL ++ + G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354 Query: 274 YITQN 278 + QN Sbjct: 355 WWRQN 359 >gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]